{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":56,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":56,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"a96593cbee77","filters":{"venue":"Animal Microbiome"}},"results":[{"id":"W3031040698","doi":"10.1186/s42523-020-00028-6","title":"Composition and co-occurrence patterns of the microbiota of different niches of the bovine mammary gland: potential associations with mastitis susceptibility, udder inflammation, and teat-end hyperkeratosis","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; McMaster University; University of Manitoba","funders":"Dairy Farmers of Manitoba","keywords":"Udder; Mastitis; Biology; Ecological niche; Dysbiosis; Microbiome; Mammary gland; Microbiology; Colonization; Zoology; Ecology; Genetics","authors":[{"name":"Hooman Derakhshani","is_ca":true},{"name":"Jan C. Plaizier","is_ca":true},{"name":"Jeroen De Buck","is_ca":true},{"name":"Herman W. Barkema","is_ca":true},{"name":"Ehsan Khafipour","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01421175075922397,"gpt":0.2053143900442258,"spread":0.1911026392850018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003783568,0.0002244818,0.0004147263,0.001331421,0.0002939126,0.0008022732,0.0001604577,0.0003253536,0.0009467044],"category_scores_gemma":[0.0007427283,0.0001513434,0.0003104687,0.0009579326,0.000249558,0.0003526181,0.0005717648,0.0002647258,0.0001481142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000254831,"about_ca_system_score_gemma":0.0001816261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0016424,"about_ca_topic_score_gemma":0.002533818,"domain_scores_codex":[0.9995426,0.00007624428,0.00003714181,0.0001576709,0.00008347046,0.0001027923],"domain_scores_gemma":[0.9991683,0.0001268543,0.000448719,0.00003583457,0.00008510485,0.0001352563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000466014,0.00004968432,0.910232,0.0001255473,0.0001619012,0.0001407485,0.000319443,0.0002092123,0.08105218,0.00005661457,0.00006618232,0.00712044],"study_design_scores_gemma":[0.000002503628,0.00006466209,0.9968124,0.00001256741,0.00004352728,0.0002653503,0.000286506,0.0008807645,0.001328205,0.00005973562,0.0002381987,0.000005491535],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987037,0.0006326138,0.0003112114,0.00001560024,0.000001780142,0.000004120994,0.0001860388,0.000004609743,0.0001403031],"genre_scores_gemma":[0.9990888,0.0001695968,0.0004367012,0.00001048402,0.000003689445,0.00000640013,0.0002114554,0.000002466658,0.00007053265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0016424,"threshold_uncertainty_score":0.003265679,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3043463474","doi":"10.1186/s42523-020-00042-8","title":"Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Chinese Government Scholarship; China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"YAK; Rumen; Key (lock); Grazing; Biology; Animal science; Food science; Ecology; Fermentation","authors":[{"name":"Wei Guo","is_ca":true},{"name":"Mi Zhou","is_ca":true},{"name":"Tao Ma","is_ca":true},{"name":"Sisi Bi","is_ca":false},{"name":"Weiwei Wang","is_ca":false},{"name":"Ying Zhang","is_ca":false},{"name":"Xiaodan Huang","is_ca":false},{"name":"Le Luo Guan","is_ca":true},{"name":"Ruijun Long","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0253642151358478,"gpt":0.2289154607929698,"spread":0.203551245657122,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002225763,0.0004242442,0.0004632068,0.0005262691,0.0004271181,0.0005126584,0.000147714,0.0002854036,0.000583596],"category_scores_gemma":[0.0002995875,0.0002005662,0.0003368627,0.0004072935,0.0002935371,0.0003627911,0.0003525387,0.0003882343,0.0002410872],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002783498,"about_ca_system_score_gemma":0.0002568416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00250378,"about_ca_topic_score_gemma":0.005661307,"domain_scores_codex":[0.999837,0.00001338207,0.00001311513,0.00006472625,0.00002962415,0.00004208064],"domain_scores_gemma":[0.9996802,0.0000329062,0.0001064997,0.0000156101,0.0000884199,0.00007640829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009332921,0.00008562376,0.3904421,0.0001687011,0.0000844367,0.0003426372,0.0007314219,0.00009417538,0.5995539,0.00003531223,0.00007859609,0.007449796],"study_design_scores_gemma":[0.000001865173,0.0002189456,0.990301,0.000009925468,0.00003347936,0.0001817831,0.0004236484,0.0001465739,0.008408302,0.00001075515,0.0002576697,0.000005985843],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998923,0.0002820682,0.0002756794,0.000005745438,0.000003605134,0.000005435751,0.0003422588,0.000004260853,0.000158068],"genre_scores_gemma":[0.9964079,0.0002975382,0.001400919,0.00002646944,0.000006674191,0.00002077178,0.001027249,0.000007542149,0.0008049223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00250378,"threshold_uncertainty_score":0.004978359,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4221096091","doi":"10.1186/s42523-022-00174-z","title":"Hydrogen and formate production and utilisation in the rumen and the human colon","year":2022,"lang":"en","type":"review","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Ministry for Primary Industries; New Zealand Government","keywords":"Rumen; Formate; Production (economics); Hydrogen; Hydrogen production; Chemistry; Animal science; Food science; Biochemistry; Biology; Fermentation; Organic chemistry; Economics; Catalysis","authors":[{"name":"William J. Kelly","is_ca":false},{"name":"Roderick I. Mackie","is_ca":false},{"name":"Graeme T. Attwood","is_ca":false},{"name":"Peter H. Janssen","is_ca":false},{"name":"Tim A. McAllister","is_ca":true},{"name":"Sinead C. Leahy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05477997161712748,"gpt":0.2782636897427594,"spread":0.223483718125632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007599012,0.0007918797,0.001464874,0.002279699,0.0001846525,0.0008991551,0.000573493,0.001205039,0.002312784],"category_scores_gemma":[0.0009690048,0.0002903451,0.0005168912,0.00175346,0.0004082201,0.0009516784,0.0005593008,0.001051865,0.001127437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004354707,"about_ca_system_score_gemma":0.001077796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00173971,"about_ca_topic_score_gemma":0.002403676,"domain_scores_codex":[0.9998063,0.00004147147,0.00003696416,0.00003603269,0.00006104236,0.00001816055],"domain_scores_gemma":[0.9995548,0.0002068305,0.00007316343,0.000009259928,0.0001191952,0.00003679345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001642465,0.00005303758,0.0003908327,0.0341648,0.0001958023,0.0002133022,0.00006378181,0.0002472998,0.001213722,0.001805159,0.01753934,0.9439486],"study_design_scores_gemma":[0.00003566311,0.0002904598,0.004177152,0.01196788,0.0004122317,0.002291752,0.0001586409,0.0001293692,0.0007592072,0.001549355,0.9781899,0.00003830222],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001008983,0.9994133,0.00003111286,0.000115757,0.0001084757,0.000001667363,0.0000118416,0.000001832545,0.0002151295],"genre_scores_gemma":[0.0006625293,0.9988798,0.00005500651,0.00007382209,0.00009805971,0.00000328104,0.0000159319,6.521695e-7,0.0002108527],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002312784,"threshold_uncertainty_score":0.007737041,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4281990273","doi":"10.1186/s42523-022-00179-8","title":"Application of 3-nitrooxypropanol and canola oil to mitigate enteric methane emissions of beef cattle results in distinctly different effects on the rumen microbial community","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"DSM Nutritional Products; Génome Québec; Agriculture and Agri-Food Canada; National Natural Science Foundation of China; McGill University","keywords":"Canola; Methane emissions; Rumen; Beef cattle; Methane; Food science; Animal science; Environmental science; Chemistry; Biology; Biotechnology; Ecology; Fermentation","authors":[{"name":"Robert J. Gruninger","is_ca":true},{"name":"Xiu Min Zhang","is_ca":false},{"name":"M. L. Smith","is_ca":false},{"name":"L. Kung","is_ca":false},{"name":"D. Vyas","is_ca":false},{"name":"S. M. McGinn","is_ca":true},{"name":"Maik Kindermann","is_ca":false},{"name":"Min Wang","is_ca":false},{"name":"Zhi Liang Tan","is_ca":false},{"name":"K. A. Beauchemin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0160213260645235,"gpt":0.2298168342553323,"spread":0.2137955081908088,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001764675,0.0003943995,0.0003801465,0.0001896803,0.0001473098,0.0003059396,0.0002247446,0.0002994333,0.000738941],"category_scores_gemma":[0.0002083897,0.0001278597,0.0003269696,0.0001654567,0.0002171791,0.0001714121,0.0002217703,0.000381071,0.0001130198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003412007,"about_ca_system_score_gemma":0.0003827196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003886084,"about_ca_topic_score_gemma":0.005887839,"domain_scores_codex":[0.9998614,0.00002474075,0.00001035794,0.00002698702,0.00003319714,0.00004321753],"domain_scores_gemma":[0.9998198,0.00003015149,0.000047253,0.000009647185,0.0000247996,0.00006847122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001641137,0.0001536556,0.0005060303,0.00005911154,0.00001874816,0.0000166221,0.00001881326,0.00008461396,0.9957278,0.000007110849,0.00001229277,0.001754075],"study_design_scores_gemma":[0.0000489095,0.006661824,0.01525575,0.00001619736,0.00009820415,0.00006144855,0.0001305155,0.0007836939,0.9758957,0.00002226835,0.001014523,0.00001100214],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992442,0.000244047,0.0002068711,0.00003172726,0.00001272149,0.00001120556,0.00009487523,0.000006353541,0.0001479225],"genre_scores_gemma":[0.9968837,0.0002977774,0.00157191,0.0000657095,0.000006641217,0.00002229668,0.0001640648,0.000006483823,0.0009813538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003886084,"threshold_uncertainty_score":0.007726908,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3120420307","doi":"10.1186/s42523-021-00092-6","title":"Metatranscriptomic analyses reveal ruminal pH regulates fiber degradation and fermentation by shifting the microbial community and gene expression of carbohydrate-active enzymes","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture; Alberta Livestock and Meat Agency; U.S. Department of Agriculture","keywords":"Rumen; Firmicutes; Biology; Fermentation; Food science; Bacteroidetes; Xylanase; Cellulase; Proteobacteria; Digestion (alchemy); Ruminococcus; Microbiology; Biochemistry; Cellulose; Enzyme; Chemistry; Gene; 16S ribosomal RNA; Gut flora","authors":[{"name":"Mengmeng Li","is_ca":false},{"name":"R.R. White","is_ca":false},{"name":"Le Luo Guan","is_ca":true},{"name":"Laura Harthan","is_ca":false},{"name":"M.D. Hanigan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0362172381027629,"gpt":0.2661922181936982,"spread":0.2299749800909353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003215711,0.0004335486,0.0004396893,0.0005956841,0.0002727214,0.0005209893,0.0002104255,0.000371999,0.000739612],"category_scores_gemma":[0.0001795218,0.0001938505,0.0005917386,0.0005215987,0.0001655388,0.0002886709,0.0002857374,0.0004636881,0.0002841197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000281997,"about_ca_system_score_gemma":0.0003054171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008807224,"about_ca_topic_score_gemma":0.001939586,"domain_scores_codex":[0.9997792,0.00001801382,0.00001202568,0.00009433139,0.00004835823,0.00004813072],"domain_scores_gemma":[0.9997942,0.00004053626,0.00006148735,0.00001514932,0.00005592292,0.00003270349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002389747,0.00003132986,0.01014056,0.00006467068,0.00003670987,0.00003410568,0.00006850828,0.0001055185,0.9859476,0.00003457283,0.00004152559,0.003255918],"study_design_scores_gemma":[0.00002805655,0.0009212133,0.6824278,0.00007145379,0.0003498126,0.0003676413,0.0008890216,0.006768172,0.3032467,0.0004685558,0.004415478,0.00004609889],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890856,0.001360669,0.00499521,0.00009253837,0.00001929459,0.00003661156,0.003743877,0.00005267179,0.0006135022],"genre_scores_gemma":[0.9847407,0.000835244,0.007100512,0.0001650319,0.0000191957,0.00008422835,0.005373005,0.00003553812,0.001646519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008807224,"threshold_uncertainty_score":0.002474248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3121897568","doi":"10.1186/s42523-020-00064-2","title":"Oregano essential oil improves piglet health and performance through maternal feeding and is associated with changes in the gut microbiota","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Lachnospiraceae; Weaning; Biology; Gut flora; Thymol; Essential oil; Butyrate; Antimicrobial; Carvacrol; Animal science; Food science; Microbiology; Immunology; Firmicutes; Bacteria; Fermentation","authors":[{"name":"Heidi Hall","is_ca":false},{"name":"Daniel Wilkinson","is_ca":false},{"name":"M. Le Bon","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01490579589758828,"gpt":0.2183360436592027,"spread":0.2034302477616144,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002696506,0.0004301926,0.0003335442,0.0003488671,0.0001626295,0.0003206557,0.0001846683,0.000409265,0.001162997],"category_scores_gemma":[0.0002945991,0.0001439512,0.0003050376,0.0001731032,0.0002647177,0.0002454982,0.0002629,0.0005821194,0.000175286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002942387,"about_ca_system_score_gemma":0.0002544032,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006651328,"about_ca_topic_score_gemma":0.001362423,"domain_scores_codex":[0.9998233,0.00003424757,0.00001083244,0.00004497325,0.00004926201,0.00003749902],"domain_scores_gemma":[0.9997186,0.00004752878,0.0001234447,0.00002362072,0.0000298034,0.0000570037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001722183,0.000290031,0.004406179,0.000160619,0.00004716703,0.0001257475,0.0000510114,0.00004374652,0.985535,0.00003271305,0.00005738145,0.007528234],"study_design_scores_gemma":[0.0001128281,0.01647681,0.3819623,0.0001700798,0.0004212502,0.0005981095,0.0002626593,0.0008995649,0.5944909,0.0002653733,0.0043053,0.00003491017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966724,0.001708092,0.0005783612,0.0001347531,0.00002916639,0.0000130561,0.0002252872,0.00003360128,0.0006053949],"genre_scores_gemma":[0.994733,0.001550244,0.001147943,0.0001309527,0.00001333401,0.00002336815,0.0003163272,0.00002016694,0.00206469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001162997,"threshold_uncertainty_score":0.003890634,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3126796699","doi":"10.1186/s42523-021-00081-9","title":"Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Agriculture Research System of China; Zhejiang University; National Natural Science Foundation of China","keywords":"Resistome; Biology; Rumen; Microbiome; Antibiotic resistance; Metagenomics; Antimicrobial; Milking; UniFrac; Biotechnology; Microbiology; Food science; Bacteria; Antibiotics; Animal science; Integron; Genetics; Gene","authors":[{"name":"Ming‐Yuan Xue","is_ca":false},{"name":"Yun‐Yi Xie","is_ca":false},{"name":"Yifan Zhong","is_ca":false},{"name":"Jianxin Liu","is_ca":false},{"name":"Le Luo Guan","is_ca":true},{"name":"Hui‐Zeng Sun","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01716985647818385,"gpt":0.2454486045915203,"spread":0.2282787481133365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004532459,0.0004182029,0.0005893728,0.001167924,0.0004720931,0.0008875431,0.0001897064,0.0004541115,0.002177998],"category_scores_gemma":[0.0005091203,0.000188917,0.0004557123,0.0009093761,0.0002994036,0.0003141533,0.000490943,0.0005411134,0.000422554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00024188,"about_ca_system_score_gemma":0.0001607174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001504863,"about_ca_topic_score_gemma":0.001850478,"domain_scores_codex":[0.9995041,0.00006749309,0.00003107803,0.0001770441,0.00008685199,0.0001334263],"domain_scores_gemma":[0.9996625,0.00006742003,0.0001229057,0.00001683024,0.00005867768,0.00007178357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001242114,0.00009950269,0.4405702,0.0002229678,0.0003829582,0.0002392465,0.000700675,0.0002105243,0.5419644,0.0001334808,0.0002935112,0.01394045],"study_design_scores_gemma":[0.000006543273,0.0001681147,0.9916463,0.00002392252,0.00009495566,0.0002981117,0.0005011486,0.0005797948,0.005381632,0.00009809047,0.001185767,0.00001559111],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975617,0.0004953162,0.0005624946,0.00004071646,0.000007545786,0.000005716232,0.000983367,0.00001102987,0.0003322577],"genre_scores_gemma":[0.9965519,0.0002184103,0.0008498296,0.000105027,0.00001362633,0.00001915904,0.00146893,0.00001618612,0.0007570254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002177998,"threshold_uncertainty_score":0.007286072,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4297962926","doi":"10.1186/s42523-022-00204-w","title":"Influence of management practice on the microbiota of a critically endangered species: a longitudinal study of kākāpō chick faeces and associated nest litter","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Heart, Lung, and Blood Institute; Directorate for Biological Sciences; Massey University; University of Auckland; Bio-Protection Research Centre; University of British Columbia; University of Otago; Auckland Zoo; Department of Conservation, New Zealand; Dartmouth College; AgResearch","keywords":"Litter; Critically endangered; Nest (protein structural motif); Feces; Endangered species; Ecology; Biology; Zoology; Habitat","authors":[{"name":"Annie G. West","is_ca":false},{"name":"Andrew Digby","is_ca":false},{"name":"Gavin Lear","is_ca":false},{"name":"Doug P. Armstrong","is_ca":false},{"name":"Darius Armstrong‐James","is_ca":false},{"name":"Elizabeth Buckley","is_ca":false},{"name":"James Chatterton","is_ca":false},{"name":"Murray P. Cox","is_ca":false},{"name":"Robert A. Cramer","is_ca":false},{"name":"Jodie M. S. Crane","is_ca":false},{"name":"Peter K. Dearden","is_ca":false},{"name":"Daryl Eason","is_ca":false},{"name":"Matthew C. Fisher","is_ca":false},{"name":"Sara Gago","is_ca":false},{"name":"Brett D. Gartrell","is_ca":false},{"name":"Neil J. Gemmell","is_ca":false},{"name":"Travis R. Glare","is_ca":false},{"name":"Joseph Guhlin","is_ca":false},{"name":"Jason T. Howard","is_ca":false},{"name":"Donnabella C. Lacap‐Bugler","is_ca":false},{"name":"Marissa Le Lec","is_ca":false},{"name":"Xiao Xiao Lin","is_ca":false},{"name":"Lotus Lofgren","is_ca":false},{"name":"John Mackay","is_ca":false},{"name":"Jacques F. Meis","is_ca":false},{"name":"Kaesi A. Morelli","is_ca":false},{"name":"John K. Perrott","is_ca":false},{"name":"Megan Petterson","is_ca":false},{"name":"Miguel E. Quiñones‐Mateu","is_ca":false},{"name":"Johanna Rhodes","is_ca":false},{"name":"Joanna Roberts","is_ca":false},{"name":"Jason Stajich","is_ca":false},{"name":"Michael W. Taylor","is_ca":true},{"name":"Scott J. Tebbutt","is_ca":true},{"name":"Amber Truter-Meyer","is_ca":false},{"name":"Lydia Uddstrom","is_ca":false},{"name":"Lara Urban","is_ca":false},{"name":"Norman van Rhijn","is_ca":false},{"name":"Deidre Vercoe","is_ca":false},{"name":"Elisa M. Vesely","is_ca":false},{"name":"Bevan Weir","is_ca":false},{"name":"David J. Winter","is_ca":false},{"name":"Juliana H. F. Yeung","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01691010577593674,"gpt":0.2765059523047473,"spread":0.2595958465288106,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004819616,0.0002509663,0.0002768116,0.000339455,0.0005025038,0.0005132097,0.0002065065,0.0004153906,0.0009236953],"category_scores_gemma":[0.0009310645,0.0002018973,0.0002882223,0.000264227,0.0004196939,0.0003626129,0.0004445613,0.000487617,0.0001711857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005085985,"about_ca_system_score_gemma":0.0004749939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007997924,"about_ca_topic_score_gemma":0.02067523,"domain_scores_codex":[0.9997107,0.00005008346,0.00001725661,0.0001118485,0.00005243694,0.0000575889],"domain_scores_gemma":[0.9990811,0.0001027075,0.0004093666,0.00006964818,0.0001449798,0.0001922358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004350313,0.0004110877,0.9873641,0.00004867241,0.00007907073,0.0001944353,0.001410375,0.00005438594,0.006757283,0.00001907165,0.00009863719,0.003127924],"study_design_scores_gemma":[0.000001254844,0.000485142,0.9987026,0.000006691317,0.00001256515,0.00004814703,0.0004178447,0.00003733801,0.0001307598,0.000004106544,0.0001503547,0.000003186508],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996867,0.00007325241,0.00004423092,0.000008701407,0.00000169557,0.000008555523,0.0000858184,7.690679e-7,0.00009029615],"genre_scores_gemma":[0.9990045,0.00007956315,0.0002599524,0.00002296735,0.000002686053,0.00002925162,0.0002078362,0.000001354966,0.0003918501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007997924,"threshold_uncertainty_score":0.01590276,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3031385810","doi":"10.1186/s42523-020-0021-3","title":"Variation in gut bacterial composition is associated with Haemonchus contortus parasite infection of sheep","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Helminth infection and control","field":"Veterinary","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Australian Research Council; Monash University; University of Technology Sydney; Australian Society for Parasitology; University of Alberta","keywords":"Haemonchus contortus; Biology; Firmicutes; Bacteroidetes; Parasite hosting; Feces; Relative species abundance; Eggs per gram; Gut flora; Gastrointestinal tract; Intestinal parasite; Microbiome; Microbiology; Zoology; Veterinary medicine; Helminths; Abundance (ecology); Immunology; Bacteria; Ecology; 16S ribosomal RNA; Genetics","authors":[{"name":"Md. Abdullah Al Mamun","is_ca":false},{"name":"Mark Sandeman","is_ca":false},{"name":"Phil Rayment","is_ca":false},{"name":"Phillip Brook-Carter","is_ca":false},{"name":"Emily Scholes","is_ca":false},{"name":"Naga Kasinadhuni","is_ca":false},{"name":"David Piedrafita","is_ca":false},{"name":"Andrew R. Greenhill","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03388796006438899,"gpt":0.2761642964837431,"spread":0.2422763364193541,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002464875,0.000183966,0.0003251877,0.0006384063,0.0002503178,0.0004535846,0.0001264877,0.0004341508,0.0008248031],"category_scores_gemma":[0.0007292489,0.0002269784,0.0001655422,0.0003452899,0.0003699347,0.000238112,0.0002722229,0.000348589,0.0002058568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000181985,"about_ca_system_score_gemma":0.00009985306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009812093,"about_ca_topic_score_gemma":0.001826692,"domain_scores_codex":[0.9997117,0.00005126187,0.00003208308,0.00008322392,0.00006234503,0.00005943765],"domain_scores_gemma":[0.9993735,0.0001010639,0.0002817423,0.00002411162,0.00009440064,0.0001252428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001130879,0.0001400912,0.7392535,0.0001091862,0.00008575471,0.0004253413,0.000649124,0.00006631383,0.2554188,0.00002461511,0.00009046936,0.002605786],"study_design_scores_gemma":[0.000001486315,0.0001763031,0.9984484,0.000004687,0.000009019423,0.0001878602,0.0001401145,0.00004102096,0.000921422,0.000007314719,0.00006029213,0.00000199657],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996336,0.0001296603,0.00002803141,0.000006058721,0.000001218391,0.000003294698,0.0000672506,0.000001125107,0.0001297916],"genre_scores_gemma":[0.9994393,0.0001045411,0.0001032002,0.00001042973,0.000003585671,0.00001074901,0.0001680514,0.000001332201,0.0001588503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009812093,"threshold_uncertainty_score":0.002759278,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3091801165","doi":"10.1186/s42523-020-00055-3","title":"Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; McGill University","keywords":"Caterpillar; Biology; Microbiome; Firmicutes; Actinobacteria; Ecology; Host (biology); Bacteroidetes; Proteobacteria; Insect; Metagenomics; Microbial population biology; Habitat; Larva; Bacteria; 16S ribosomal RNA","authors":[{"name":"Sofia I. F. Gomes","is_ca":false},{"name":"Anna M. Kielak","is_ca":false},{"name":"S. Emilia Hannula","is_ca":false},{"name":"Robin Heinen","is_ca":false},{"name":"Renske Jongen","is_ca":false},{"name":"Ivor Keesmaat","is_ca":false},{"name":"Jonathan R. De Long","is_ca":false},{"name":"Т. Martijn Bezemer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04057687561701383,"gpt":0.234870463448775,"spread":0.1942935878317612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001590266,0.0002584464,0.0002669137,0.0007002635,0.0004294071,0.0005056122,0.00009610104,0.0002932861,0.001032752],"category_scores_gemma":[0.0002015452,0.0001479614,0.0002424135,0.00044175,0.0003104915,0.0002500508,0.0004182355,0.0001856446,0.0002715983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001392388,"about_ca_system_score_gemma":0.0001650942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001950604,"about_ca_topic_score_gemma":0.00545004,"domain_scores_codex":[0.999849,0.0000137517,0.00001005697,0.00006637221,0.00002556686,0.00003521477],"domain_scores_gemma":[0.9997849,0.00002525143,0.00007426042,0.00001723188,0.00004507887,0.00005337496],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001793672,0.00002403642,0.1575222,0.0002438496,0.00009253986,0.0001919556,0.000599211,0.00009655597,0.8333241,0.00004781404,0.0001386219,0.007539721],"study_design_scores_gemma":[0.00000292526,0.0001386482,0.9858354,0.00001838272,0.00003752876,0.0005230753,0.0005809224,0.0001395422,0.0116004,0.00004861741,0.001065914,0.000008597078],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973843,0.0004561926,0.0007138952,0.00002137218,0.000004665014,0.00001454471,0.0007216951,0.00001985351,0.0006635921],"genre_scores_gemma":[0.9965384,0.0002609672,0.001801492,0.00006585158,0.000004699116,0.00001775335,0.0008480359,0.000008692984,0.0004540272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001950604,"threshold_uncertainty_score":0.003878534,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3177579230","doi":"10.1186/s42523-021-00105-4","title":"Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo; American Society of Mammalogists; University of Windsor; University of Guelph","keywords":"Mammal; Phenotype; Host (biology); Microbiome; Biology; Urbanization; Zoology; Ecology; Evolutionary biology; Genetics; Gene","authors":[{"name":"Mason R. Stothart","is_ca":true},{"name":"Amy E. M. Newman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006747536547061396,"gpt":0.2307029817713068,"spread":0.2239554452242454,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000242353,0.0001697048,0.0001871712,0.0002325158,0.0002699165,0.000461598,0.0001149716,0.0002277454,0.001722505],"category_scores_gemma":[0.0005421307,0.0001294111,0.0002536265,0.0001732092,0.0005428334,0.0002262276,0.0004662768,0.000407831,0.0001437033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002472293,"about_ca_system_score_gemma":0.0001394107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002434324,"about_ca_topic_score_gemma":0.006887781,"domain_scores_codex":[0.9997521,0.00006648494,0.00001008373,0.00008680737,0.0000420856,0.00004237364],"domain_scores_gemma":[0.9994261,0.0001281005,0.0002041769,0.00004881378,0.00005203996,0.0001407361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003088868,0.000225426,0.7017683,0.00007181532,0.000250506,0.0002553522,0.0009015299,0.0002997901,0.2864471,0.0001405073,0.0003726028,0.006178176],"study_design_scores_gemma":[0.000002209846,0.000198091,0.9979823,0.000002544703,0.00001862968,0.00005080988,0.0002212216,0.0001012548,0.001290306,0.00002535289,0.0001036312,0.000003762586],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995747,0.00004881229,0.00007311377,0.00001798158,0.000002995489,0.000002437434,0.0001063032,0.000002896347,0.0001708011],"genre_scores_gemma":[0.9996098,0.00001795729,0.0001164767,0.00002534602,0.000002420415,0.000004457735,0.0001000079,0.000003178134,0.0001204688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002434324,"threshold_uncertainty_score":0.005762398,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4391566464","doi":"10.1186/s42523-024-00289-5","title":"An artificial intelligence approach of feature engineering and ensemble methods depicts the rumen microbiome contribution to feed efficiency in dairy cows","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Guelph","funders":"University of California, Davis; National Institute of Food and Agriculture; Ontario Agri-Food Innovation Alliance; U.S. Department of Agriculture; Genome Alberta; Genome Canada","keywords":"Feed conversion ratio; Dairy cattle; Biology; Rumen; Biotechnology; Population; Microbiome; Inefficiency; Residual feed intake; Barn; Animal science; Food science; Fermentation; Engineering; Economics; Body weight","authors":[{"name":"H.F. Monteiro","is_ca":false},{"name":"C.C. Figueiredo","is_ca":false},{"name":"B. Mion","is_ca":true},{"name":"J.E.P. Santos","is_ca":false},{"name":"R.S. Bisinotto","is_ca":false},{"name":"Francisco Peñagaricano","is_ca":false},{"name":"E.S. Ribeiro","is_ca":true},{"name":"M. Nehme Marinho","is_ca":false},{"name":"R. Zimpel","is_ca":false},{"name":"Ana Carolina da Silva","is_ca":false},{"name":"Adeoye Oyebade","is_ca":false},{"name":"Richard Roberto Lobo","is_ca":false},{"name":"W.M. Coelho","is_ca":false},{"name":"P.M. Peixoto","is_ca":false},{"name":"Maria B. Ugarte Marin","is_ca":false},{"name":"Sebastian G. Umaña-Sedó","is_ca":false},{"name":"Tomás D. G. Rojas","is_ca":false},{"name":"Modesto Elvir-Hernandez","is_ca":false},{"name":"Flávio S. Schenkel","is_ca":true},{"name":"Bart C. Weimer","is_ca":false},{"name":"C. Titus Brown","is_ca":false},{"name":"E. Kebreab","is_ca":false},{"name":"F.S. Lima","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02260520531113562,"gpt":0.2790393781454532,"spread":0.2564341728343176,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001335449,0.0005936587,0.0005068835,0.001211531,0.000414732,0.0008704325,0.0004620058,0.0005789619,0.0006327719],"category_scores_gemma":[0.002784899,0.0002010933,0.001162311,0.0006842982,0.0001937221,0.0004836791,0.0006618968,0.0007530539,0.0001487387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004150089,"about_ca_system_score_gemma":0.0003258062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00567146,"about_ca_topic_score_gemma":0.005130123,"domain_scores_codex":[0.9996908,0.0001250002,0.00001641309,0.00008751621,0.00003721185,0.00004304978],"domain_scores_gemma":[0.9990159,0.0005556981,0.0001001277,0.0001038687,0.0001773218,0.00004705305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000403586,0.0003040908,0.1564756,0.00008921096,0.0007950597,0.0002435207,0.0002975021,0.5285465,0.02086684,0.001757577,0.001998592,0.2882219],"study_design_scores_gemma":[0.000003291455,0.00004586199,0.01246423,0.000006911742,0.00003212823,0.0000208826,0.00003379701,0.9853532,0.0009014387,0.0008870888,0.0002409109,0.00001031873],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7125992,0.0005179739,0.2841187,0.0003902679,0.00006087758,0.00004014969,0.000581739,0.0005064588,0.001184594],"genre_scores_gemma":[0.9579961,0.0001243667,0.04073742,0.00006659554,0.00003741184,0.00003792575,0.0005523474,0.00002414297,0.0004235209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00567146,"threshold_uncertainty_score":0.0112769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3162105606","doi":"10.1186/s42523-021-00098-0","title":"The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Minnow Environmental (Canada)","funders":"","keywords":"Probiotic; Medicine; Prebiotic; Population; Randomized controlled trial; Lactobacillus reuteri; Bifidobacterium animalis; Internal medicine; Lactobacillus fermentum; Placebo; Gastroenterology; Biology; Lactobacillus; Food science; Bifidobacterium; Bacteria","authors":[{"name":"Jirayu Tanprasertsuk","is_ca":false},{"name":"Aashish R. Jha","is_ca":false},{"name":"Justin Shmalberg","is_ca":false},{"name":"Roshonda B. Jones","is_ca":false},{"name":"LeeAnn M. Perry","is_ca":false},{"name":"Heather Maughan","is_ca":false},{"name":"Ryan W. Honaker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01192171615892202,"gpt":0.3118209464929645,"spread":0.2998992303340425,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003600899,0.00133102,0.004202399,0.000495365,0.0007226986,0.001445372,0.0009635836,0.00283796,0.005789242],"category_scores_gemma":[0.003651819,0.0006712363,0.002104595,0.0005559291,0.001572286,0.001389387,0.0007349282,0.00220525,0.0006513582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008248562,"about_ca_system_score_gemma":0.0013811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005478165,"about_ca_topic_score_gemma":0.001213989,"domain_scores_codex":[0.997785,0.001141837,0.0002167647,0.0004124481,0.0001805408,0.0002634495],"domain_scores_gemma":[0.9975261,0.0005315976,0.0008404999,0.0002324862,0.0002341254,0.0006351327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.9869735,0.004931477,0.0005883527,0.0006420062,0.0009649877,0.00001899766,0.00003395168,0.00006161161,0.0009153186,0.00003672996,0.0002529267,0.004579975],"study_design_scores_gemma":[0.8971419,0.09791932,0.0030262,0.00009553377,0.000755779,0.00001621588,0.00003594803,0.0001723421,0.0002215912,0.00009326459,0.0005081641,0.00001363365],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817547,0.005753519,0.0007754872,0.0009461212,0.0009786178,0.007567631,0.0008093638,0.0001165515,0.001297941],"genre_scores_gemma":[0.9751257,0.002414027,0.002735124,0.001232019,0.0006304804,0.01519917,0.0006581981,0.00002040426,0.001984827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005789242,"threshold_uncertainty_score":0.01936698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4206650014","doi":"10.1186/s42523-021-00157-6","title":"Performance of distinct microbial based solutions in a Campylobacter infection challenge model in poultry","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; University of Guelph; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; Ministry of Agriculture, Food and Rural Affairs; Alberta Livestock and Meat Agency; Ontario Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Campylobacter jejuni; Biology; Campylobacter; Microbiology; Pediococcus acidilactici; Microbiome; Clostridium perfringens; Saccharomyces boulardii; Gut flora; Salmonella enterica; Arcobacter; Bacitracin; Lactobacillus salivarius; Antibiotics; Lactobacillus; Food science; Salmonella; Bacteria; Probiotic; Immunology","authors":[{"name":"Maxine Ty","is_ca":true},{"name":"Khaled Taha-Abdelaziz","is_ca":false},{"name":"Vanessa Demey","is_ca":false},{"name":"Mathieu Castex","is_ca":false},{"name":"Shayan Sharif","is_ca":true},{"name":"John Parkinson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02713401792056703,"gpt":0.2124826591928644,"spread":0.1853486412722974,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004321399,0.0008807346,0.0008654139,0.000404875,0.0003177729,0.0005267602,0.0006313186,0.001159951,0.001570293],"category_scores_gemma":[0.0003243054,0.0002620029,0.0005427111,0.0001673606,0.0005143262,0.0004437105,0.0004587296,0.001533561,0.0003450923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005406,"about_ca_system_score_gemma":0.000800042,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002041451,"about_ca_topic_score_gemma":0.003514894,"domain_scores_codex":[0.9994113,0.00007731487,0.00005102429,0.0001678446,0.0001463594,0.0001461822],"domain_scores_gemma":[0.9994982,0.00007087178,0.0001004568,0.00003471424,0.0000914759,0.0002042006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006365869,0.004458382,0.000695295,0.000341494,0.00003790598,0.0001010045,0.0001302318,0.000528738,0.9830406,0.00005577529,0.0001510792,0.004093602],"study_design_scores_gemma":[0.0003465723,0.0932113,0.00692344,0.00007603889,0.0001528488,0.0001497652,0.0003239336,0.002506222,0.8942739,0.0001205567,0.001868104,0.00004738151],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963409,0.0005669274,0.001160303,0.0001639674,0.0001132332,0.0002886496,0.0003873435,0.00003670726,0.0009420071],"genre_scores_gemma":[0.9882072,0.0009039643,0.005065763,0.0002059706,0.00003182082,0.0006480096,0.0006412824,0.00002032363,0.00427583],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002041451,"threshold_uncertainty_score":0.005253136,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4206077042","doi":"10.1186/s42523-022-00162-3","title":"Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Ontario Ministry of Agriculture, Food and Rural Affairs; Swine Innovation Porc; Compute Canada","keywords":"Streptococcus suis; Biology; Tonsil; Microbiome; Streptococcus; Microbiology; Disease; Serotype; Immunology; Bacteria; Pathology; Medicine; Genetics; Virulence","authors":[{"name":"Maysa Niazy","is_ca":true},{"name":"Sarah C. Hill","is_ca":true},{"name":"Khurram Nadeem","is_ca":true},{"name":"Nicole Ricker","is_ca":true},{"name":"Abdolvahab Farzan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02185739324754778,"gpt":0.2785646663050997,"spread":0.2567072730575519,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003338327,0.0002151452,0.000248151,0.0006707518,0.0008557751,0.0005410797,0.0002433208,0.0002771853,0.0007220395],"category_scores_gemma":[0.0003723238,0.0002216063,0.000271113,0.0006370798,0.0005217315,0.0001882772,0.0003707584,0.000202083,0.000159685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002821473,"about_ca_system_score_gemma":0.001821789,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1989153,"about_ca_topic_score_gemma":0.441651,"domain_scores_codex":[0.999765,0.00002248174,0.00001110565,0.00006744108,0.00005891849,0.00007515758],"domain_scores_gemma":[0.9996704,0.00003036078,0.0001125266,0.00001287457,0.0001081227,0.00006578142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004090317,0.00004547128,0.9728837,0.00005069733,0.00002908445,0.0006023809,0.001269925,0.00007458119,0.0209096,0.00002037082,0.00008740938,0.003617625],"study_design_scores_gemma":[0.000001815508,0.00009451186,0.9982263,0.000004499119,0.00001046269,0.0001284975,0.000882347,0.0001151747,0.0003548423,0.000006144754,0.000172908,0.000002458432],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995192,0.00004173603,0.00006011134,0.000009415737,0.000001205011,0.00000687884,0.0001293435,0.000001262736,0.000230828],"genre_scores_gemma":[0.9990512,0.00008548376,0.0001652952,0.00001578965,0.000001489753,0.000008613815,0.0002698822,0.000001477486,0.0004007325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8010848,"threshold_uncertainty_score":0.3955149,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4291178371","doi":"10.1186/s42523-022-00197-6","title":"Does swab type matter? Comparing methods for Mannheimia haemolytica recovery and upper respiratory microbiome characterization in feedlot cattle","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Texas A and M University","keywords":"Bovine respiratory disease; Biology; Veterinary medicine; McNemar's test; Microbiology; 16S ribosomal RNA; Concordance; Microbiome; Medicine; Bacteria; Bioinformatics","authors":[{"name":"William B. Crosby","is_ca":false},{"name":"Lee J. Pinnell","is_ca":false},{"name":"John T Richeson","is_ca":false},{"name":"Cory Wolfe","is_ca":false},{"name":"Jake Castle","is_ca":false},{"name":"John Dustin Loy","is_ca":false},{"name":"Sheryl Gow","is_ca":true},{"name":"Keun Seok Seo","is_ca":false},{"name":"Sarah F. Capik","is_ca":false},{"name":"Amelia R. Woolums","is_ca":false},{"name":"Paul S. Morley","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03133093191217245,"gpt":0.3330294989150029,"spread":0.3016985670028305,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02379777,0.0008068879,0.001126371,0.001210602,0.0004547512,0.002223505,0.0007815679,0.00126579,0.001120747],"category_scores_gemma":[0.03435845,0.0004961979,0.0008953106,0.001006462,0.001080118,0.001280614,0.000737844,0.0005962782,0.000707069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006908061,"about_ca_system_score_gemma":0.0006690642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001788088,"about_ca_topic_score_gemma":0.005438834,"domain_scores_codex":[0.9798851,0.01139632,0.001807438,0.001988575,0.004170709,0.0007518238],"domain_scores_gemma":[0.9724097,0.01606639,0.00440891,0.001118821,0.00529769,0.0006984915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.02263662,0.001254799,0.6575727,0.00459529,0.002794625,0.0002025333,0.003553487,0.0007323146,0.1417664,0.0001775278,0.002035183,0.1626786],"study_design_scores_gemma":[0.0002498375,0.02681135,0.8952683,0.001806667,0.00234311,0.0007628605,0.005545569,0.003866164,0.05341556,0.000512774,0.009259051,0.0001587319],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9755042,0.01312195,0.007213225,0.0008291262,0.0006225745,0.0003263579,0.0007433256,0.00006720269,0.00157215],"genre_scores_gemma":[0.9725094,0.005079207,0.01839525,0.0009465948,0.0002769637,0.0003896475,0.001475416,0.00007212754,0.0008553275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02379777,"threshold_uncertainty_score":0.1258562,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4281876890","doi":"10.1186/s42523-022-00189-6","title":"Expressions of resistome is linked to the key functions and stability of active rumen microbiome","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Alberta","funders":"Agricultural Science and Technology Innovation Program; Natural Sciences and Engineering Research Council of Canada; Alberta Agriculture and Forestry; Ministry of Agriculture, Forestry and Fisheries; Genome Alberta; Chinese Academy of Agricultural Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Resistome; Metagenomics; Microbiome; Biology; Rumen; Ruminococcus; Microbiology; Microbial ecology; Bacteria; Genetics; Food science; Gene; Antibiotic resistance; Fermentation","authors":[{"name":"Tao Ma","is_ca":true},{"name":"Rahat Zaheer","is_ca":true},{"name":"Tim A. McAllister","is_ca":true},{"name":"Wei Guo","is_ca":true},{"name":"Fuyong Li","is_ca":true},{"name":"Yan Tu","is_ca":false},{"name":"Qiyu Diao","is_ca":false},{"name":"Le Luo Guan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02559680171600858,"gpt":0.2626001475579606,"spread":0.237003345841952,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003305499,0.0003019912,0.0003495924,0.0007524485,0.0002254529,0.0007519578,0.0001042491,0.0003043912,0.001181925],"category_scores_gemma":[0.0004396115,0.0001304768,0.0002175836,0.0005698231,0.000303642,0.000303657,0.0004483156,0.000304337,0.0002337803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001894876,"about_ca_system_score_gemma":0.0001318223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006444498,"about_ca_topic_score_gemma":0.0006182504,"domain_scores_codex":[0.9997283,0.00003255618,0.00002136977,0.00009702088,0.00006102002,0.00005978765],"domain_scores_gemma":[0.9993907,0.0001013706,0.0003185803,0.00002553317,0.00008136797,0.00008239764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005751812,0.00005451476,0.2403192,0.0001853849,0.0001079915,0.00009542469,0.0002574002,0.000153584,0.7505488,0.00008241073,0.0000785258,0.007541623],"study_design_scores_gemma":[0.000003842576,0.0001543057,0.9775868,0.00001757976,0.00005040196,0.0002383256,0.0002707355,0.0004631988,0.02043987,0.0001055351,0.0006604461,0.000008888418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981909,0.0004269652,0.0005362678,0.00002298715,0.000003302798,0.0000046184,0.000531377,0.000009789544,0.000273858],"genre_scores_gemma":[0.997932,0.0002188037,0.0007584422,0.00002438762,0.000007555127,0.00001181495,0.0007698292,0.000005594503,0.0002714189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001181925,"threshold_uncertainty_score":0.003953934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3113596786","doi":"10.1186/s42523-020-00063-3","title":"The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Colonisation; Microbiome; Ecology; Beta diversity; Perch; Zoology; Species richness; Colonization; Fishery","authors":[{"name":"Bachar Cheaib","is_ca":true},{"name":"Hamza Seghouani","is_ca":true},{"name":"Martin Llewellyn","is_ca":false},{"name":"Katherine Vandal-Lenghan","is_ca":true},{"name":"Pierre-Luc Mercier","is_ca":true},{"name":"Nicolas Derôme","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008372835786269003,"gpt":0.2392876113246886,"spread":0.2309147755384196,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001366759,0.0001482883,0.0001907617,0.0001310303,0.0001505179,0.0002693314,0.0001083499,0.0001806057,0.000394061],"category_scores_gemma":[0.0002205166,0.0001146382,0.0001947584,0.00008090497,0.0002023055,0.0001265939,0.0003107136,0.0002084869,0.00006412161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001539775,"about_ca_system_score_gemma":0.0001391114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001638673,"about_ca_topic_score_gemma":0.002759662,"domain_scores_codex":[0.9998914,0.00001619461,0.000008914593,0.0000462239,0.00002069304,0.00001647934],"domain_scores_gemma":[0.9998447,0.00002850356,0.0000555882,0.00001668815,0.00002552409,0.00002910124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001301508,0.00001607989,0.02263351,0.00003613327,0.000017093,0.00005252939,0.00008150449,0.000709481,0.974609,0.00003773097,0.00002210059,0.001654664],"study_design_scores_gemma":[0.00001439734,0.0008443377,0.7891525,0.00001260672,0.00004636038,0.0003138548,0.0007138027,0.01790359,0.1897866,0.0002273737,0.000958881,0.00002567366],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992575,0.00002808666,0.0005269901,0.0000105611,0.000001307324,0.000002522636,0.0000945029,0.000005511998,0.00007300599],"genre_scores_gemma":[0.9990445,0.00002585571,0.0005156127,0.00001197317,8.275554e-7,0.000008609701,0.0001220022,0.000002722236,0.0002678192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001638673,"threshold_uncertainty_score":0.003258228,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200385935","doi":"10.1186/s42523-021-00151-y","title":"Impact of zinc oxide, benzoic acid and probiotics on the performance and cecal microbiota of piglets","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"DSM Nutritional Products","keywords":"Firmicutes; Weaning; Bacteroidetes; Probiotic; Food science; Bacillus licheniformis; Benzoic acid; Diarrhea; Feed conversion ratio; Zinc; Caecum; Biology; Bacteria; Chemistry; Animal science; Bacillus subtilis; Biochemistry; Medicine; Gastroenterology; Body weight; Internal medicine; 16S ribosomal RNA","authors":[{"name":"Caio Abércio da Silva","is_ca":false},{"name":"Leonardo Aparecido Teixeira Bentin","is_ca":true},{"name":"Cleandro Pazinato Dias","is_ca":false},{"name":"Marco Aurélio Callegari","is_ca":false},{"name":"Vitor Barbosa Facina","is_ca":false},{"name":"Francine Taniguchi Falleiros Dias","is_ca":false},{"name":"Adsos Passos","is_ca":false},{"name":"Claudia Cassimira da Silva","is_ca":false},{"name":"Márcio Costa","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01649822318210351,"gpt":0.2236371991471328,"spread":0.2071389759650293,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002853141,0.0003277911,0.0003914568,0.0001857648,0.0001611463,0.0003125279,0.0001653662,0.0003478757,0.0008046707],"category_scores_gemma":[0.0002481208,0.0001593085,0.0002386361,0.00007995584,0.0002662074,0.0001774916,0.0002147433,0.0003249175,0.0001845669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000263271,"about_ca_system_score_gemma":0.0002577018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001182662,"about_ca_topic_score_gemma":0.00198745,"domain_scores_codex":[0.999742,0.00004770927,0.00001958997,0.00007659016,0.00006334808,0.00005081217],"domain_scores_gemma":[0.999756,0.0000272546,0.00007644748,0.00001348668,0.00003392446,0.00009289644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004261441,0.0004657891,0.01199705,0.0001010149,0.00003349602,0.000116479,0.00006775798,0.00004912804,0.9787794,0.000008981247,0.00003190652,0.004087502],"study_design_scores_gemma":[0.0002496785,0.0542573,0.5322406,0.00005442598,0.0002524203,0.0004803917,0.0005642627,0.0006687851,0.4088713,0.00005359604,0.002272699,0.00003448408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994372,0.0002482204,0.00008496595,0.00002096203,0.000008882189,0.00001222626,0.00006158374,0.000003016151,0.0001229493],"genre_scores_gemma":[0.9975712,0.0003638995,0.0004972533,0.0000738457,0.000009067577,0.00002877962,0.0001913593,0.000003804582,0.001260729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001182662,"threshold_uncertainty_score":0.002691865,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4224234097","doi":"10.1186/s42523-022-00183-y","title":"Ileal microbial composition in genetically distinct chicken lines reared under normal or high ambient temperatures","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Broiler; Biology; 16S ribosomal RNA; Host (biology); Animal science; Veterinary medicine; Food science; Zoology; Bacteria; Ecology; Genetics","authors":[{"name":"Nima K. Emami","is_ca":false},{"name":"Lori L. Schreier","is_ca":false},{"name":"Elizabeth Greene","is_ca":false},{"name":"Travis Tabler","is_ca":false},{"name":"Sara Orlowski","is_ca":false},{"name":"Nicholas B. Anthony","is_ca":false},{"name":"Monika Proszkowiec‐Weglarz","is_ca":false},{"name":"Sami Dridi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01430617108256138,"gpt":0.2203086040986421,"spread":0.2060024330160808,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000130397,0.0002611754,0.0002282262,0.0005764788,0.0002487418,0.0003246175,0.0001268692,0.0002708523,0.0007580579],"category_scores_gemma":[0.0002420142,0.0001820372,0.0002109714,0.0001957674,0.0002953429,0.000134443,0.0002371747,0.0003164219,0.0001646889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003112395,"about_ca_system_score_gemma":0.0001423857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004007289,"about_ca_topic_score_gemma":0.007865242,"domain_scores_codex":[0.9997765,0.00002168111,0.00001683484,0.00009898488,0.00004288223,0.00004304851],"domain_scores_gemma":[0.9997367,0.00002876612,0.000086026,0.00001833289,0.00006016635,0.00006991997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00120214,0.0001080651,0.05369477,0.00006323796,0.00004743821,0.0001535781,0.0004235869,0.00005961939,0.9418423,0.00002689636,0.00007668215,0.002301603],"study_design_scores_gemma":[0.000009981914,0.0008825936,0.9664667,0.00001626496,0.00006754652,0.0002753955,0.0005135088,0.0002313523,0.03093012,0.00001772467,0.0005728563,0.00001605783],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990939,0.0001080235,0.0001628196,0.000007438351,0.0000046768,0.000009019283,0.0003937316,0.000004826054,0.0002155802],"genre_scores_gemma":[0.9973812,0.0000960034,0.0006098002,0.00004463627,0.000003264114,0.00004002414,0.0008845652,0.00001389984,0.0009266637],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004007289,"threshold_uncertainty_score":0.007967889,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4310045830","doi":"10.1186/s42523-022-00211-x","title":"A longitudinal census of the bacterial community in raw milk correlated with Staphylococcus aureus clinical mastitis infections in dairy cattle","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; McGill University; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Mastitis; Staphylococcus aureus; Udder; Microbiome; Biology; Microbiology; Dairy cattle; Staphylococcal infections; Staphylococcus epidermidis; Staphylococcus; Somatic cell count; Veterinary medicine; Lactation; Bacteria; Ice calving; Medicine; Animal science; Pregnancy; Bioinformatics","authors":[{"name":"So-Youn Park","is_ca":true},{"name":"Dongyun Jung","is_ca":true},{"name":"Ianina Altshuler","is_ca":true},{"name":"Daryna Kurban","is_ca":true},{"name":"Simon Dufour","is_ca":true},{"name":"Jennifer Ronholm","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04339110574913259,"gpt":0.267133586358333,"spread":0.2237424806092004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005371609,0.0001388989,0.0002247689,0.0007114894,0.0003175751,0.0005651641,0.0002278103,0.0003780761,0.0007006934],"category_scores_gemma":[0.001121892,0.000163362,0.000191001,0.0006650165,0.000251395,0.0002778585,0.0003443977,0.0002826799,0.0001425445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004615874,"about_ca_system_score_gemma":0.0002010241,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004771711,"about_ca_topic_score_gemma":0.006962279,"domain_scores_codex":[0.9995841,0.00008314572,0.0000227481,0.0001230297,0.00008363098,0.0001032416],"domain_scores_gemma":[0.9990422,0.0001474662,0.0004259404,0.00005271912,0.0001811148,0.0001504966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001306357,0.00001751948,0.9959066,0.000005692496,0.00002087468,0.00001818469,0.00005962076,0.0000342728,0.002900072,0.000004660094,0.00003052018,0.0008712937],"study_design_scores_gemma":[7.22923e-7,0.00004759465,0.9995844,0.000001586426,0.000005397541,0.00003562489,0.00009255687,0.00009206177,0.0000959415,0.000004977282,0.00003818554,9.255828e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996095,0.00006924567,0.0000555792,0.000007066628,8.901458e-7,0.000001766003,0.0001901663,0.000001517498,0.00006429365],"genre_scores_gemma":[0.9993439,0.00004737003,0.0001128037,0.00001166613,0.000002125271,0.000006341359,0.0003852968,8.520915e-7,0.00008956897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004771711,"threshold_uncertainty_score":0.009487867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3138403870","doi":"10.1186/s42523-021-00111-6","title":"Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Graduate School, University of Colorado Boulder; University of Colorado Boulder; Colorado Mountain Club Foundation","keywords":"Biology; Microbiome; Ecology; Phylum; Zoology; Snail; Gut flora; Bacteria; Genetics","authors":[{"name":"Bridget Chalifour","is_ca":false},{"name":"Jingchun Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009576547606477633,"gpt":0.1915776706446509,"spread":0.1820011230381733,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001422816,0.0001897,0.0001963988,0.0004761257,0.0004869082,0.0003136586,0.0001422067,0.0002423361,0.0004145941],"category_scores_gemma":[0.0001953237,0.0001479386,0.0001700842,0.0002327035,0.0003670556,0.0002016034,0.0003098598,0.0002186159,0.0001170102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001939452,"about_ca_system_score_gemma":0.0003011683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005088491,"about_ca_topic_score_gemma":0.01713912,"domain_scores_codex":[0.9999051,0.000008670096,0.000007349463,0.00004069963,0.00001905162,0.00001904953],"domain_scores_gemma":[0.99978,0.00002090195,0.00008445463,0.0000125499,0.00005515956,0.00004683108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002704466,0.000107629,0.4954044,0.000113945,0.00004804014,0.00023542,0.001016881,0.0001258357,0.4978977,0.00003507794,0.00005540831,0.00468924],"study_design_scores_gemma":[0.000003429362,0.0002154103,0.9938501,0.00001012689,0.00001593875,0.000254509,0.0006321833,0.0001632346,0.004554149,0.00001403711,0.0002835149,0.000003324575],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995881,0.00004541092,0.0001275803,0.000003628174,5.79412e-7,0.000005970192,0.00011675,0.000001792014,0.0001101703],"genre_scores_gemma":[0.9978315,0.00008046317,0.00116876,0.00003113985,0.000001461742,0.00002527182,0.0005650374,0.000004199741,0.0002921606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005088491,"threshold_uncertainty_score":0.01011771,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4281808333","doi":"10.1186/s42523-022-00178-9","title":"Effect of antimicrobial administration on fecal microbiota of critically ill dogs: dynamics of antimicrobial resistance over time","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"U.S. Food and Drug Administration; WALTHAM Foundation","keywords":"Antibiotic resistance; Feces; Antimicrobial; Medicine; Multiple drug resistance; Microbiology; Drug resistance; Peritonitis; Pneumonia; Antibiotics; Ciprofloxacin; Internal medicine; Biology; Veterinary medicine","authors":[{"name":"Julie Ménard","is_ca":true},{"name":"Robert Goggs","is_ca":false},{"name":"Patrick K. Mitchell","is_ca":false},{"name":"Yufan Yang","is_ca":false},{"name":"Sarah Robbins","is_ca":false},{"name":"Rebecca Franklin‐Guild","is_ca":false},{"name":"Anil Thachil","is_ca":false},{"name":"Craig Altier","is_ca":false},{"name":"Renee Anderson","is_ca":false},{"name":"Gregory Putzel","is_ca":false},{"name":"Holly McQueary","is_ca":false},{"name":"Laura B. Goodman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008053627717207554,"gpt":0.2834783713574279,"spread":0.2754247436402203,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000298341,0.0001673115,0.0004681603,0.0002254737,0.0001350055,0.0003678376,0.000102972,0.0002862258,0.0006480557],"category_scores_gemma":[0.0007348022,0.000121414,0.000247846,0.0001615024,0.0002647038,0.0002383655,0.00023184,0.0004236484,0.0001119616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002417709,"about_ca_system_score_gemma":0.0001827797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004041223,"about_ca_topic_score_gemma":0.0007774964,"domain_scores_codex":[0.9997126,0.00007067988,0.00002193716,0.00006041686,0.00005323081,0.00008104508],"domain_scores_gemma":[0.9993702,0.0001557871,0.000181716,0.00003548425,0.00008290158,0.0001739795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.03317958,0.003729427,0.3950286,0.0003719726,0.0002858192,0.0006498293,0.0008815468,0.0005241501,0.5161016,0.00006552443,0.0005945061,0.04858737],"study_design_scores_gemma":[0.00007398636,0.03523891,0.9188315,0.00002218628,0.0001374278,0.0004695395,0.0004517701,0.0007152556,0.04303931,0.00003767522,0.0009629785,0.00001936321],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996124,0.0001883927,0.00004044765,0.00001619551,0.0000032545,0.000005095273,0.00004922148,0.000001800182,0.00008330697],"genre_scores_gemma":[0.999429,0.0001109482,0.0001358434,0.00003159949,0.000006077654,0.000008405667,0.0001575456,0.000001066457,0.0001194137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006480557,"threshold_uncertainty_score":0.00216794,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3134232995","doi":"10.1186/s42523-021-00123-2","title":"Effect of maternal separation and transportation stress on the bovine upper respiratory tract microbiome and the immune response to resident opportunistic pathogens","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Saskatchewan Health Authority; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Weaning; Microbiome; Bovine respiratory disease; Biology; Respiratory tract; Immune system; Respiratory system; Immunology; Antibody; Physiology; Microbiology; Animal science","authors":[{"name":"Nilusha Malmuthuge","is_ca":true},{"name":"Angela Howell","is_ca":true},{"name":"Natasa Arsic","is_ca":true},{"name":"Tracy Prysliak","is_ca":true},{"name":"José Perez‐Casal","is_ca":true},{"name":"Philip Griebel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008746888229860448,"gpt":0.2733684328816612,"spread":0.2646215446518007,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003666509,0.0003703227,0.0003857774,0.0001855662,0.0002930435,0.0004978654,0.0002225504,0.0002942732,0.001065112],"category_scores_gemma":[0.0004505054,0.0001548899,0.0003042238,0.0001529454,0.0003562598,0.0002283146,0.0003723343,0.0007077637,0.00008592598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009544952,"about_ca_system_score_gemma":0.0005394117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005044459,"about_ca_topic_score_gemma":0.01103671,"domain_scores_codex":[0.9995733,0.00009318183,0.00002163486,0.0001074644,0.00008987809,0.0001145574],"domain_scores_gemma":[0.9993049,0.0001385594,0.0002358863,0.00002892288,0.00007765422,0.0002140361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01065066,0.001074508,0.1137107,0.0002630238,0.000206252,0.0002719205,0.0008945363,0.0001796623,0.8607166,0.00006537123,0.0001722984,0.01179448],"study_design_scores_gemma":[0.00004958872,0.01410384,0.9209708,0.00004732014,0.0002018147,0.0001975433,0.001168831,0.0005076573,0.06176008,0.00005912982,0.0009057571,0.00002771118],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999334,0.0002732841,0.0001365981,0.00002908444,0.000008226455,0.00000624093,0.0001017892,0.000002129017,0.0001086239],"genre_scores_gemma":[0.9985856,0.0002225587,0.0003476983,0.00007459335,0.00000780986,0.00002986038,0.000225425,0.000002582982,0.000503817],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005044459,"threshold_uncertainty_score":0.01003021,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4226124876","doi":"10.1186/s42523-022-00163-2","title":"Metaproteomic profiling of fungal gut colonization in gnotobiotic mice","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Cumming School of Medicine, University of Calgary; Canadian Institutes of Health Research; Norges Forskningsråd; Natural Sciences and Engineering Research Council of Canada; Sick Kids Foundation","keywords":"Biology; Microbiology; Metabolome; Proteome; Feces; Colonisation; Colonization; Antimicrobial; Gut flora; Microbiome; Host (biology); Innate immune system; Immune system; Immunology; Metabolite; Biochemistry; Ecology","authors":[{"name":"Veronika Kuchařová Pettersen","is_ca":true},{"name":"Antoine Dufour","is_ca":true},{"name":"Marie‐Claire Arrieta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008973137837923728,"gpt":0.2444940846775331,"spread":0.2355209468396094,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001985564,0.0005108684,0.0003386235,0.0009124402,0.000190093,0.0003546556,0.0001891319,0.0003561896,0.0007247726],"category_scores_gemma":[0.0001651043,0.0001762139,0.0004051246,0.0004281609,0.0002433704,0.0002000199,0.0002779634,0.000537472,0.0002077012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002186597,"about_ca_system_score_gemma":0.0001527463,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000396213,"about_ca_topic_score_gemma":0.000652383,"domain_scores_codex":[0.9998031,0.00001842953,0.00001107126,0.00006835265,0.0000643009,0.00003465516],"domain_scores_gemma":[0.9997734,0.00002060409,0.00009337415,0.00001463145,0.00003711501,0.00006089848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002584856,0.00001360957,0.002174461,0.00002843115,0.000017688,0.00003363996,0.00001250841,0.00001923192,0.9965862,0.00001208671,0.00001939139,0.0008242168],"study_design_scores_gemma":[0.00002747614,0.0009521598,0.293859,0.00003380854,0.0001679739,0.001004027,0.0001376982,0.001447264,0.6995687,0.0001558956,0.002623006,0.00002304287],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924663,0.001423262,0.002827923,0.00006206206,0.00001772541,0.00003129492,0.002576803,0.00007007541,0.0005246249],"genre_scores_gemma":[0.9834746,0.001782365,0.007652038,0.0002766948,0.0000190613,0.00009790965,0.004756785,0.00009249007,0.001848047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009124402,"threshold_uncertainty_score":0.002424598,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4391843710","doi":"10.1186/s42523-024-00293-9","title":"Dynamic effects of black soldier fly larvae meal on the cecal bacterial microbiota and prevalence of selected antimicrobial resistant determinants in broiler chickens","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Insect Utilization and Effects","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; University of Guelph; Queen's University; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"Ontario Agri-Food Innovation Alliance; Canada First Research Excellence Fund; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; Broiler; Virginiamycin; Hermetia illucens; Bacitracin; Clostridia; Meal; Animal science; Litter; 16S ribosomal RNA; Food science; Veterinary medicine; Microbiology; Antibiotics; Bacteria; Larva; Ecology","authors":[{"name":"Calvin Ho‐Fung Lau","is_ca":true},{"name":"Sabrina Capitani","is_ca":true},{"name":"Yuan-Ching Tien","is_ca":true},{"name":"Lou Ann Verellen","is_ca":true},{"name":"Munene Kithama","is_ca":true},{"name":"Hellen Kang","is_ca":true},{"name":"Elijah G. Kiarie","is_ca":true},{"name":"Edward Topp","is_ca":true},{"name":"Moussa S. Diarra","is_ca":true},{"name":"Michael Fruci","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006648185570178442,"gpt":0.2076950472116783,"spread":0.2010468616414999,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000139739,0.0003143106,0.0002573885,0.0002602919,0.0001558939,0.0003313102,0.0001433618,0.0003075539,0.0005933645],"category_scores_gemma":[0.0001944283,0.0001822237,0.0001894461,0.0001031471,0.000248514,0.00016782,0.0001914956,0.0003967323,0.0001516933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004173464,"about_ca_system_score_gemma":0.0001797171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003247886,"about_ca_topic_score_gemma":0.008334241,"domain_scores_codex":[0.9998172,0.00002954022,0.00001263147,0.0000545446,0.00004554643,0.00004059615],"domain_scores_gemma":[0.9997851,0.00002810449,0.00007537084,0.000007451707,0.00003184504,0.00007219899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001245137,0.00009525137,0.007852773,0.000049204,0.00001834942,0.00004238059,0.00005588437,0.00005210477,0.9894636,0.000007585006,0.00002474661,0.00109295],"study_design_scores_gemma":[0.00003953291,0.004947086,0.5646123,0.00003566858,0.0001104474,0.0001934787,0.0006851258,0.0008824166,0.4274377,0.00002764816,0.001000717,0.00002787954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995695,0.0001297237,0.00006240481,0.00001340605,0.000002435874,0.000004408103,0.0001019485,0.000003172755,0.0001131361],"genre_scores_gemma":[0.998349,0.0001329532,0.0004072156,0.00005495437,0.000002598398,0.00001525008,0.0002308475,0.000004774766,0.0008024724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003247886,"threshold_uncertainty_score":0.006457984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4396685075","doi":"10.1186/s42523-024-00308-5","title":"Exploring the complexities of poultry respiratory microbiota: colonization, composition, and impact on health","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Ontario Agri-Food Innovation Alliance","keywords":"Biology; Disease; Medicine","authors":[{"name":"Samson Oladokun","is_ca":true},{"name":"Shayan Sharif","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05510910415498647,"gpt":0.3164605821228842,"spread":0.2613514779678977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006883834,0.0005031675,0.0007873549,0.0007667267,0.0002657631,0.001238927,0.0002869613,0.0007972392,0.001285429],"category_scores_gemma":[0.0007734251,0.0001773539,0.0006291224,0.0005674195,0.0003901527,0.0009147039,0.0006932274,0.0007912242,0.0003201978],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004325531,"about_ca_system_score_gemma":0.001112849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002574316,"about_ca_topic_score_gemma":0.003973589,"domain_scores_codex":[0.9996009,0.0001235382,0.00003962101,0.0000814813,0.0001015651,0.00005295925],"domain_scores_gemma":[0.9996736,0.0001358207,0.00007096727,0.00001295551,0.00007834234,0.00002831762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0004423076,0.00009352099,0.01484891,0.02451246,0.0006214734,0.00119205,0.001096512,0.002205376,0.2004951,0.00646089,0.006608872,0.7414225],"study_design_scores_gemma":[0.00004447746,0.001512527,0.138274,0.01596237,0.001723507,0.008270405,0.004291638,0.003166939,0.05852374,0.01625859,0.7517648,0.0002071299],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.03593505,0.9501835,0.005721517,0.002471471,0.0005584878,0.00002458342,0.0002563802,0.00003386597,0.00481527],"genre_scores_gemma":[0.08857897,0.9021628,0.005292329,0.0009228718,0.000460641,0.00002455476,0.0003599161,0.00001180238,0.002186131],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002574316,"threshold_uncertainty_score":0.005118668,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389832338","doi":"10.1186/s42523-023-00286-0","title":"Noninvasive sampling of the small intestinal chyme for microbiome, metabolome and antimicrobial resistance genes in dogs, a proof of concept","year":2023,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Cumming School of Medicine, University of Calgary; Canterbury Medical Research Foundation; International Microbiome Centre, University of Calgary; Animal Welfare Institute","keywords":"Metabolome; UniFrac; Microbiome; Feces; Beagle; Biology; Gastrointestinal tract; Gastroenterology; Metabolomics; Microbiology; Medicine; Bioinformatics; 16S ribosomal RNA; Bacteria; Genetics; Biochemistry","authors":[{"name":"Julie Ménard","is_ca":true},{"name":"Sahar Bagheri","is_ca":true},{"name":"Sharanya Menon","is_ca":false},{"name":"Y. Tina Yu","is_ca":false},{"name":"Laura B. Goodman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02712065950535234,"gpt":0.2744901765140266,"spread":0.2473695170086743,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001275007,0.0005199778,0.0005112862,0.0004111332,0.0001735691,0.0004785763,0.0004740542,0.0007261976,0.001111638],"category_scores_gemma":[0.0009876682,0.0003438691,0.0004343346,0.0001665665,0.0004752672,0.0005369062,0.0004686751,0.0005741176,0.0003717967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002315289,"about_ca_system_score_gemma":0.0004924656,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005034061,"about_ca_topic_score_gemma":0.0008107206,"domain_scores_codex":[0.9994393,0.0001333758,0.00002610947,0.0001599268,0.0001905791,0.00005071465],"domain_scores_gemma":[0.9994661,0.00009060061,0.0001450996,0.0000621203,0.0001295207,0.0001065599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001206702,0.0004363099,0.01366817,0.0004805367,0.0001082394,0.0002598422,0.0001264277,0.0004911213,0.9550843,0.0002611427,0.001460548,0.02641645],"study_design_scores_gemma":[0.0004988977,0.02803822,0.1247885,0.0002043809,0.0006586069,0.006205902,0.0005640852,0.0171948,0.7857748,0.0009535747,0.03496141,0.0001568107],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8207561,0.004357412,0.1666541,0.001151224,0.000312381,0.001167079,0.002961484,0.0008424876,0.001797668],"genre_scores_gemma":[0.8550993,0.003181862,0.1324915,0.0008566643,0.0001383219,0.001557041,0.003809264,0.00009958716,0.002766459],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001275007,"threshold_uncertainty_score":0.006742954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4391090535","doi":"10.1186/s42523-023-00277-1","title":"Characterization of the hoof bacterial communities in feedlot cattle affected with digital dermatitis, foot rot or both using a surface swab technique","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Behavior and Welfare Studies","field":"Veterinary","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Calgary; Olds College; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Beef Cattle Research Council","keywords":"Hoof; Foot (prosody); Veterinary medicine; Foot rot; Feedlot; Biology; Medicine; Animal science; Ecology; Art","authors":[{"name":"Nicholas S. T. Wong","is_ca":true},{"name":"Nilusha Malmuthge","is_ca":true},{"name":"Désirée Gellatly","is_ca":true},{"name":"Wiolene Montanari Nordi","is_ca":true},{"name":"Trevor W. Alexander","is_ca":true},{"name":"Rodrigo Ortega Polo","is_ca":true},{"name":"Eugene Janzen","is_ca":true},{"name":"K. S. Schwartzkopf-Genswein","is_ca":true},{"name":"Murray Jelinski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03687900391101601,"gpt":0.2853221764216405,"spread":0.2484431725106245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002277487,0.0003731156,0.0003794862,0.001102854,0.0005022673,0.0008189104,0.0001955695,0.0003485755,0.000459522],"category_scores_gemma":[0.0003434174,0.0001860742,0.0002042524,0.000968852,0.0003409762,0.0002322225,0.0002588158,0.0001907573,0.0001673416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004451166,"about_ca_system_score_gemma":0.0004408445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02886683,"about_ca_topic_score_gemma":0.04466008,"domain_scores_codex":[0.9996634,0.00002188776,0.0000193869,0.00008217752,0.0001227776,0.00009042848],"domain_scores_gemma":[0.9997038,0.00004152876,0.00007747776,0.000008353589,0.0001090795,0.00005980455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008926877,0.0002591653,0.5152482,0.0002289557,0.00006149095,0.000497244,0.001878044,0.0001557405,0.4702934,0.00002441988,0.0000667604,0.01039378],"study_design_scores_gemma":[0.000005366179,0.0004856729,0.9892132,0.00001234125,0.00003000119,0.0002827522,0.001154988,0.0001870827,0.008386963,0.000007803308,0.0002290336,0.000004903125],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993531,0.00009384274,0.0001528133,0.000004424056,0.000001803119,0.00001553586,0.0001826133,0.000002600173,0.0001932045],"genre_scores_gemma":[0.9974028,0.0002566541,0.001007759,0.00002085926,0.000004584654,0.00002101191,0.00072904,0.000002745486,0.0005544718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02886683,"threshold_uncertainty_score":0.0573976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3032072823","doi":"10.1186/s42523-020-00025-9","title":"Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Marine Biology and Ecology Research","field":"Earth and Planetary Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Metagenomics; Ciona intestinalis; Symbiosis; Evolutionary biology; Gene; Ecology; Bacteria; Genetics","authors":[{"name":"Bonita McCuaig","is_ca":true},{"name":"Lourdes Peña‐Castillo","is_ca":true},{"name":"Suzanne C. Dufour","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01503272289545445,"gpt":0.2212100096041532,"spread":0.2061772867086987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001610085,0.000468131,0.0003272528,0.001609271,0.0004151968,0.0005898443,0.000187299,0.0004024453,0.001030573],"category_scores_gemma":[0.0002916977,0.0001860385,0.0004867152,0.000938901,0.0002191295,0.0003580299,0.0006545207,0.0003119846,0.0002962755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002054687,"about_ca_system_score_gemma":0.0002267829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00109008,"about_ca_topic_score_gemma":0.001996679,"domain_scores_codex":[0.999817,0.000009955394,0.00001496977,0.0000858701,0.00003508683,0.000037161],"domain_scores_gemma":[0.9997556,0.00004224334,0.00006560696,0.00002430286,0.00005549394,0.00005676477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002571607,0.00003279874,0.04777782,0.0001624376,0.00005954846,0.0001209793,0.0002877117,0.0001356349,0.9444621,0.00007229654,0.00005613882,0.006575492],"study_design_scores_gemma":[0.00001454552,0.0003839568,0.9305236,0.00005335857,0.0002716406,0.001063204,0.0007061255,0.001207074,0.06227208,0.0002774646,0.003196499,0.00003045108],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940284,0.0007483856,0.001114822,0.00004144299,0.000004693753,0.00001848127,0.003291495,0.00003030944,0.0007218525],"genre_scores_gemma":[0.9907956,0.0003434031,0.002374677,0.00006305174,0.000007316331,0.00003491565,0.005830818,0.00001872018,0.0005316122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001609271,"threshold_uncertainty_score":0.003447592,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4391466977","doi":"10.1186/s42523-024-00292-w","title":"Monomodular and multifunctional processive endocellulases: implications for swine nutrition and gut microbiome","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Food composition and properties","field":"Nursing","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Food Inspection Agency; University of Guelph","funders":"China Scholarship Council; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Swine Innovation Porc","keywords":"Cellulase; Nutrient; Biology; Biotechnology; Food science; Cellulose; Biochemistry; Ecology","authors":[{"name":"Ming Fan","is_ca":true},{"name":"Laurence E. Cheng","is_ca":true},{"name":"Min Wang","is_ca":true},{"name":"Jiali Chen","is_ca":true},{"name":"Wenyi Fan","is_ca":true},{"name":"Fatmira Jashari","is_ca":true},{"name":"Weijun Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02071905875905825,"gpt":0.2671919964745472,"spread":0.246472937715489,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004745253,0.0002957991,0.0002225373,0.0002752243,0.0001709592,0.0009708942,0.0001517435,0.0005270768,0.0006250681],"category_scores_gemma":[0.0002798177,0.00009818756,0.0002533288,0.0003086463,0.0003834625,0.0006526196,0.000412475,0.0004516353,0.0001522821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003156538,"about_ca_system_score_gemma":0.0006037516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009357121,"about_ca_topic_score_gemma":0.00137096,"domain_scores_codex":[0.9998361,0.00003133783,0.000009272505,0.00005491705,0.00002357061,0.00004471453],"domain_scores_gemma":[0.9998118,0.00002655523,0.00006914537,0.00001090998,0.00004034468,0.00004128626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003932954,0.00009838813,0.05590398,0.001313107,0.0001387015,0.0005364806,0.0005000509,0.0006338839,0.8186044,0.003154668,0.001316338,0.1174068],"study_design_scores_gemma":[0.00004378076,0.00225833,0.594974,0.0007319193,0.0004751967,0.002638046,0.003905549,0.006272608,0.1871171,0.01397369,0.1874551,0.0001546642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8919325,0.08549652,0.01168471,0.003759325,0.0002141365,0.00004307282,0.001382155,0.00008921211,0.005398327],"genre_scores_gemma":[0.9495883,0.03676978,0.009378345,0.001022988,0.00009535428,0.00004081729,0.0009804262,0.00001774424,0.002106272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009708942,"threshold_uncertainty_score":0.002509594,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402347799","doi":"10.1186/s42523-024-00328-1","title":"In vitro and ex vivo metabolism of chemically diverse fructans by bovine rumen Bifidobacterium and Lactobacillus species","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary; University of Lethbridge","funders":"Beef Cattle Research Council; Deutsche Forschungsgemeinschaft; University of Lethbridge","keywords":"Fructan; Inulin; Prebiotic; Rumen; Food science; Bifidobacterium; Biology; Lactobacillus; Fermentation; Chemistry; Microbiology; Sucrose","authors":[{"name":"Marissa L. King","is_ca":true},{"name":"Xiaohui Xing","is_ca":true},{"name":"Greta Reintjes","is_ca":false},{"name":"Leeann Klassen","is_ca":true},{"name":"Kristin E. Low","is_ca":true},{"name":"Trevor W. Alexander","is_ca":true},{"name":"Matthew Waldner","is_ca":true},{"name":"Trushar R. Patel","is_ca":true},{"name":"D. Wade Abbott","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007010059020206291,"gpt":0.2231046101894737,"spread":0.2160945511692674,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005269656,0.0005376398,0.0004091259,0.0002240542,0.0002240852,0.0004497958,0.0002902001,0.0004204889,0.0004981644],"category_scores_gemma":[0.0002807329,0.0002192862,0.0003808255,0.0002470015,0.0001802068,0.0003117664,0.0002936034,0.0004189293,0.0002108587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003932158,"about_ca_system_score_gemma":0.0002467224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003663754,"about_ca_topic_score_gemma":0.002681803,"domain_scores_codex":[0.9996107,0.0001171115,0.00003754436,0.0000669582,0.00006496103,0.0001027632],"domain_scores_gemma":[0.9997945,0.00005736531,0.0000413376,0.00002465677,0.00003466822,0.00004745661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007346092,0.0001255146,0.0009046655,0.00005306693,0.00001378082,0.00002357347,0.00004677426,0.0001010467,0.9967641,0.00002799553,0.00002313132,0.001181779],"study_design_scores_gemma":[0.00006422774,0.004969861,0.03648957,0.00004887974,0.0001039349,0.0002453279,0.0002966478,0.002860551,0.9531371,0.0000658899,0.00169609,0.00002192388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964473,0.001602702,0.0006993802,0.00003941444,0.00001930629,0.00001910773,0.0003771008,0.000008778662,0.0007869626],"genre_scores_gemma":[0.9940383,0.0008087244,0.002182599,0.00006863839,0.00001657046,0.0000294393,0.001425979,0.0000125456,0.001417221],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003663754,"threshold_uncertainty_score":0.00728482,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4400130553","doi":"10.1186/s42523-024-00325-4","title":"Metataxonomic and metabolomic profiling revealed Pinus koraiensis cone essential oil reduced methane emission through affecting ruminal microbial interactions and host-microbial metabolism","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; University of British Columbia","funders":"National Institute of Animal Science; Rural Development Administration; Gyeongsang National University","keywords":"Pinus koraiensis; Metabolomics; Methane; Chemistry; Biology; Botany; Ecology; Chromatography","authors":[{"name":"Young Hae Choi","is_ca":true},{"name":"S. J. Lee","is_ca":false},{"name":"H. S. Kim","is_ca":false},{"name":"Jun Sik Eom","is_ca":false},{"name":"Seong Uk Jo","is_ca":false},{"name":"Le Luo Guan","is_ca":true},{"name":"S. S. Lee","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02048513107112024,"gpt":0.2604813534679362,"spread":0.239996222396816,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001131458,0.0003984844,0.0003538076,0.0005141366,0.0001615795,0.0002697413,0.000117518,0.0001722907,0.0006117232],"category_scores_gemma":[0.0000884699,0.0001133638,0.0003564158,0.0002852423,0.0001430147,0.0002034405,0.0002317209,0.0002279418,0.00009667752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001346902,"about_ca_system_score_gemma":0.0002053258,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001482027,"about_ca_topic_score_gemma":0.002160951,"domain_scores_codex":[0.9999026,0.00001158697,0.000006479846,0.00003133337,0.00002302936,0.00002503912],"domain_scores_gemma":[0.9999254,0.00001037447,0.00002203903,0.000004000868,0.00001794998,0.00002016441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003526602,0.00003103819,0.004085329,0.00006027364,0.00001560624,0.00004194804,0.00002584805,0.00004884978,0.9938155,0.00001537886,0.00001591547,0.001491512],"study_design_scores_gemma":[0.00002659394,0.00136481,0.4080729,0.00003221367,0.0001920057,0.0002904613,0.0005862242,0.002964179,0.5841281,0.0001418594,0.002171481,0.00002908345],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981919,0.0003101919,0.0005996643,0.0000221657,0.000005050845,0.00001363398,0.0005909865,0.00001266719,0.0002538482],"genre_scores_gemma":[0.9961292,0.0003007673,0.001442451,0.00003235947,0.000003972026,0.00003731236,0.0008979403,0.000008746282,0.00114734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001482027,"threshold_uncertainty_score":0.002946794,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3199927716","doi":"10.1186/s42523-021-00124-1","title":"High royal jelly production does not impact the gut microbiome of honey bees","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Division of Environmental Biology; National Science Foundation","keywords":"Royal jelly; Apiary; Honey bee; Biology; Pollination; Propolis; Microbiome; Gut flora; Honey Bees; Swarming (honey bee); Varroa sensitive hygiene; Worker bee; Gut microbiome; Beekeeping; Zoology; Botany; Pollen; Immunology; Bioinformatics","authors":[{"name":"Megan E. Damico","is_ca":false},{"name":"Olav Rueppell","is_ca":true},{"name":"Zack Shaffer","is_ca":false},{"name":"Bin Han","is_ca":false},{"name":"Kasie Raymann","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01619970790855225,"gpt":0.2480600688654752,"spread":0.2318603609569229,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002244343,0.0002530034,0.0002662836,0.0001901073,0.0002886557,0.0005353877,0.0002019788,0.0003753246,0.001817646],"category_scores_gemma":[0.0006060206,0.0001296366,0.0003846553,0.000174581,0.0004801501,0.0003399528,0.0004097816,0.0005257758,0.0001983392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003525577,"about_ca_system_score_gemma":0.0002951422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001696007,"about_ca_topic_score_gemma":0.002521634,"domain_scores_codex":[0.9997009,0.00004839255,0.00001692264,0.00009357632,0.00006407536,0.00007612012],"domain_scores_gemma":[0.9994857,0.00006779609,0.000202294,0.00005484265,0.00004629689,0.0001429215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001010247,0.0001538258,0.1470704,0.0001720276,0.0001298342,0.0002749529,0.0003855327,0.00008921486,0.8435361,0.0001036671,0.0002889505,0.006785271],"study_design_scores_gemma":[0.00002084914,0.0005677963,0.9817677,0.0000146051,0.00008024776,0.0001675179,0.0004526932,0.0002553829,0.01556491,0.00008146492,0.001016539,0.00001032776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991535,0.0001908468,0.00009801204,0.00005946347,0.000009653,0.000006327261,0.0001306077,0.000004205609,0.0003474467],"genre_scores_gemma":[0.99906,0.00008735921,0.0001390289,0.0001284748,0.000004976598,0.00001453625,0.0001680543,0.000006074123,0.0003915941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001817646,"threshold_uncertainty_score":0.006080627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410284352","doi":"10.1186/s42523-025-00407-x","title":"Temporal microbial colonization on different forages is driven by the rumen environmental conditions","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Zhejiang University; National Natural Science Foundation of China; Københavns Universitet; University of Alberta","keywords":"Rumen; Hay; Incubation; Animal science; Fermentation; Propionate; Forage; Corn stover; Digestion (alchemy); Dry matter; Biology; Food science; Fibrobacter succinogenes; Ruminant; Agronomy; Chemistry; Biochemistry; Pasture; Chromatography","authors":[{"name":"Xiao Xie","is_ca":true},{"name":"J. K. Wang","is_ca":false},{"name":"J. X. Liu","is_ca":false},{"name":"Lorelei Guan","is_ca":true},{"name":"A. L. A. Neves","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008708802498487381,"gpt":0.2178249918780191,"spread":0.2091161893795317,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002529629,0.0002522952,0.0004101858,0.0002323971,0.0002850161,0.0005972773,0.0001667415,0.0003394336,0.0006309111],"category_scores_gemma":[0.0002270247,0.0001695727,0.0003055274,0.0002164258,0.0003009751,0.0002780718,0.0003828806,0.000421048,0.0001274014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002690951,"about_ca_system_score_gemma":0.0002136719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001395859,"about_ca_topic_score_gemma":0.002765976,"domain_scores_codex":[0.9996859,0.00005438308,0.00001990096,0.0000994014,0.00006905608,0.00007148043],"domain_scores_gemma":[0.9997827,0.0000327829,0.00007615235,0.00001647488,0.00004645675,0.00004533071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004200923,0.00003337453,0.009821733,0.00005209864,0.00002681038,0.00006437527,0.0001122777,0.00003760434,0.9880894,0.00001914402,0.0000182821,0.00130491],"study_design_scores_gemma":[0.00001379328,0.001264451,0.7475224,0.00002515935,0.00009002644,0.0002668988,0.001331594,0.0008203661,0.2471039,0.0001002985,0.001432795,0.00002830424],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986503,0.0003835586,0.0003475537,0.00001842466,0.000004950949,0.00001164668,0.0001463783,0.000003971384,0.0004331863],"genre_scores_gemma":[0.9978855,0.0003160093,0.0008299319,0.00005251214,0.000006478911,0.00002878897,0.0003406509,0.000005766151,0.0005345199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001395859,"threshold_uncertainty_score":0.00277549,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4392751741","doi":"10.1186/s42523-024-00297-5","title":"Dietary carbohydrate sources differently prime the microbial ecosystem but not the epithelial gene expression profile along the complete gut of young calves","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Agriculture and Agri-Food Canada; Veterinärmedizinische Universität Wien; Bundesministerium für Land- und Forstwirtschaft, Umwelt und Wasserwirtschaft; Deutsche Forschungsgemeinschaft","keywords":"Gene expression; Biology; Carbohydrate; Prime (order theory); Microbiology; Gene; Gut microflora; Ecosystem; Food science; Ecology; Biochemistry; Genetics; Bacteria; Mathematics","authors":[{"name":"Thomas Hartinger","is_ca":false},{"name":"Cátia Pacífico","is_ca":false},{"name":"Arife Sener-Aydemir","is_ca":false},{"name":"Gregor Poier","is_ca":false},{"name":"Susanne Kreuzer-Redmer","is_ca":false},{"name":"Georg Terler","is_ca":false},{"name":"Fenja Klevenhusen","is_ca":false},{"name":"Qendrim Zebeli","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02376503578523064,"gpt":0.2200685285075036,"spread":0.1963034927222729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001540158,0.0002076054,0.0002954578,0.0003251028,0.0001651479,0.000555664,0.0001095897,0.0002483118,0.0006687773],"category_scores_gemma":[0.0002147132,0.0001610963,0.000178797,0.0002342037,0.0002253448,0.0002204981,0.0001912633,0.0003393992,0.0001197184],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003143307,"about_ca_system_score_gemma":0.0002533759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002890205,"about_ca_topic_score_gemma":0.005253698,"domain_scores_codex":[0.9997867,0.00002018216,0.0000115504,0.00006776278,0.0000494152,0.00006432283],"domain_scores_gemma":[0.9998204,0.00003155674,0.00005322,0.000008563174,0.00003673558,0.00004947402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002883307,0.00001216346,0.006175862,0.00003399873,0.00001142086,0.00001911947,0.00004326414,0.00002497169,0.9924933,0.00000797726,0.00001001608,0.0008795296],"study_design_scores_gemma":[0.000009688862,0.0007222763,0.8576906,0.00002352769,0.00008005579,0.0001309682,0.0005182057,0.0003715323,0.1397012,0.0000418146,0.0006960248,0.0000141669],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987959,0.0003904473,0.0003355638,0.00001423413,0.000003236706,0.000005294402,0.0002813167,0.000004250425,0.0001698445],"genre_scores_gemma":[0.9970696,0.0005080689,0.0008035839,0.00008789981,0.000005831191,0.00002317512,0.0006586674,0.00001190995,0.0008312911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002890205,"threshold_uncertainty_score":0.005746841,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412496844","doi":"10.1186/s42523-025-00440-w","title":"Fecal microbiota transplantation in pigs: current status and future perspective","year":2025,"lang":"en","type":"review","venue":"Animal Microbiome","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency","keywords":"Fecal bacteriotherapy; Perspective (graphical); Feces; Transplantation; Current (fluid); Biology; Medicine; Immunology; Internal medicine; Microbiology; Clostridium difficile; Engineering; Computer science; Artificial intelligence; Antibiotics","authors":[{"name":"Rajibur Rahman","is_ca":true},{"name":"Camila Schultz Marcolla","is_ca":true},{"name":"Benjamin P. Willing","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02888356533865851,"gpt":0.368913262210409,"spread":0.3400296968717506,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001682802,0.0006724127,0.001507981,0.001442814,0.0002018919,0.001518331,0.0007966389,0.001722814,0.004676512],"category_scores_gemma":[0.002092255,0.000244044,0.0009810999,0.001343886,0.0005404611,0.00156452,0.000623451,0.001555502,0.001198098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004904636,"about_ca_system_score_gemma":0.001839273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008475694,"about_ca_topic_score_gemma":0.001482348,"domain_scores_codex":[0.9996716,0.00008440521,0.00006019365,0.00005989828,0.000090594,0.00003333886],"domain_scores_gemma":[0.9984378,0.0009750791,0.000185525,0.00003110397,0.0002914571,0.00007894179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000176449,0.00008640344,0.0002240635,0.0400346,0.0001358953,0.0001289614,0.00005484914,0.0002384468,0.001310491,0.0022547,0.01408439,0.9412708],"study_design_scores_gemma":[0.00005122028,0.0004743767,0.001735623,0.0275181,0.0005724073,0.001303389,0.0001671093,0.0001738115,0.000735339,0.003003177,0.9642276,0.00003778108],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001025141,0.9988733,0.00007549805,0.0003816285,0.0001897127,0.000003034698,0.00001252403,0.000004568534,0.0003572858],"genre_scores_gemma":[0.0005781663,0.9987656,0.0001230606,0.0002185258,0.0001560866,0.000004941026,0.00001453312,0.000001142698,0.0001380013],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004676512,"threshold_uncertainty_score":0.01564455,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410909727","doi":"10.1186/s42523-025-00421-z","title":"Novel insight into the impact of black soldier fly larvae meal and protease on cecal microbiome, SCFAs, and excreta composition in laying hens","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Insect Utilization and Effects","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Dalhousie University","funders":"Dalhousie University; Egg Farmers of Canada; Department of Agriculture, Nova Scotia","keywords":"Gut microbiome; Larva; Microbiome; Meal; Protease; Composition (language); Biology; Zoology; Food science; Animal science; Ecology; Biochemistry; Bioinformatics; Enzyme","authors":[{"name":"Jing Lu","is_ca":true},{"name":"Renée M. Petri","is_ca":true},{"name":"Janice MacIsaac","is_ca":true},{"name":"Stephanie A. Collins","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01337865145509622,"gpt":0.2467873809294014,"spread":0.2334087294743052,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001576224,0.0002960722,0.0002497735,0.0002610342,0.0001153564,0.00027777,0.000100579,0.0002601316,0.0009374209],"category_scores_gemma":[0.00008919636,0.0001064315,0.0002156424,0.0001271646,0.0001922512,0.0002576104,0.0001630362,0.0002127603,0.0001033173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001481893,"about_ca_system_score_gemma":0.0001634753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006681169,"about_ca_topic_score_gemma":0.001482209,"domain_scores_codex":[0.9999462,0.00000852069,0.000003416977,0.00001747467,0.00001048994,0.00001387445],"domain_scores_gemma":[0.9999299,0.000009411176,0.00002150321,0.000003645976,0.0000143692,0.00002118506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007589445,0.00008804204,0.01169153,0.0001335944,0.0000235906,0.00006772773,0.00007000164,0.00005226416,0.983076,0.00002240453,0.00003620267,0.003979779],"study_design_scores_gemma":[0.00003391244,0.004003292,0.7318203,0.0000695718,0.0001657433,0.000510355,0.001240486,0.001235356,0.258651,0.0001439279,0.002103043,0.00002299774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983012,0.0008699621,0.0003777846,0.00003708493,0.000004683476,0.00000875907,0.0002038948,0.000005044879,0.0001915604],"genre_scores_gemma":[0.9967456,0.0007637911,0.001298868,0.00008561196,0.000007317993,0.00001672449,0.0003766177,0.000003421703,0.0007020063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009374209,"threshold_uncertainty_score":0.003136039,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411418099","doi":"10.1186/s42523-025-00404-0","title":"Host traits and environmental variation shape gut microbiota diversity in wild threespine stickleback","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"University of California, San Diego; Deutsche Forschungsgemeinschaft","keywords":"Biology; Stickleback; Gut flora; Host (biology); Ecology; Evolutionary ecology; Niche; Evolutionary biology; Trophic level; Environmental change; Beta diversity; Zoology; Biodiversity; Climate change; Fish <Actinopterygii>","authors":[{"name":"Andreas Härer","is_ca":false},{"name":"Emma Kurstjens","is_ca":false},{"name":"Diana J. Rennison","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007414667511007734,"gpt":0.2252943241879889,"spread":0.2178796566769811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000199909,0.0001803446,0.0002160833,0.0005135341,0.0004755348,0.00048335,0.0001748127,0.0002435262,0.001160446],"category_scores_gemma":[0.000491878,0.0001133274,0.000193855,0.0003409082,0.0005974606,0.0001718029,0.0004088292,0.0002127214,0.00009642167],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006059937,"about_ca_system_score_gemma":0.000521777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04840384,"about_ca_topic_score_gemma":0.1411161,"domain_scores_codex":[0.9998524,0.00001949547,0.000008085317,0.00005477542,0.00003579801,0.00002941234],"domain_scores_gemma":[0.9996891,0.00004509071,0.0001153913,0.00002172389,0.000055482,0.00007318653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002720175,0.00001718766,0.9487064,0.00003179508,0.00009967932,0.000122334,0.0005625904,0.0001641407,0.04621733,0.00005235657,0.00008822521,0.003665989],"study_design_scores_gemma":[0.00000139448,0.00002163017,0.9992404,0.000003862849,0.00001248739,0.00003368754,0.0002616642,0.000104745,0.0002386658,0.00002233141,0.00005660878,0.000002577528],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997004,0.00004066158,0.00007370891,0.000006980154,0.000001002015,0.000001464633,0.00007196575,0.000001924168,0.0001020543],"genre_scores_gemma":[0.9995959,0.00002325357,0.0001540661,0.00001672797,9.033351e-7,0.000002938751,0.000096574,0.000001882604,0.0001077334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04840384,"threshold_uncertainty_score":0.09624416,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408925128","doi":"10.1186/s42523-025-00395-y","title":"Deep culturing the fecal microbiota of healthy laying hens","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Egg Farmers of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Feces; Laying; Biology; Microbiology; Engineering","authors":[{"name":"Natalia Lorenc","is_ca":true},{"name":"Bridget C. OʼBrien","is_ca":true},{"name":"Zhiwei Li","is_ca":true},{"name":"Dongyun Jung","is_ca":true},{"name":"Jennifer Ronholm","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007216988570040366,"gpt":0.2726977279536844,"spread":0.265480739383644,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004567892,0.0006711096,0.0003332483,0.0003592803,0.0003314783,0.0004621122,0.0002879806,0.0003765399,0.0004663733],"category_scores_gemma":[0.0005500037,0.0002095192,0.0004148598,0.0002210791,0.0003021879,0.0003640163,0.0006793688,0.0004259819,0.0003516087],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000195844,"about_ca_system_score_gemma":0.0002506251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002284181,"about_ca_topic_score_gemma":0.003741903,"domain_scores_codex":[0.9996555,0.00003793077,0.00003975114,0.0001195858,0.00008223191,0.00006493755],"domain_scores_gemma":[0.9996129,0.0000822673,0.00006751807,0.00005535526,0.0001163729,0.00006551445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009323008,0.00005707645,0.007054007,0.0000505925,0.00001328292,0.00005487953,0.00009120678,0.0002315572,0.9883886,0.00001361324,0.00003011285,0.003921829],"study_design_scores_gemma":[0.00002295705,0.002660923,0.1780232,0.00005106545,0.0001445534,0.0006277401,0.0005176626,0.002877002,0.8129176,0.0001347955,0.001990019,0.00003242623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914083,0.0002408174,0.0064903,0.00007196247,0.00002230952,0.0001362902,0.0008167196,0.00004752212,0.0007656702],"genre_scores_gemma":[0.9510729,0.0006018186,0.0424347,0.0002195791,0.00003082285,0.0001739893,0.003373105,0.00004969281,0.002043382],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002284181,"threshold_uncertainty_score":0.004541755,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411428744","doi":"10.1186/s42523-025-00432-w","title":"Genomic characterization of antimicrobial resistance and mobile genetic elements in swine gut bacteria isolated from a Canadian research farm","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McMaster University; Population Health Research Institute; University of Guelph; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mobile genetic elements; Biology; Resistome; Metagenomics; Microbiome; Antibiotic resistance; Gut flora; Genome; Genetics; Gene; Bacteria; Immunology","authors":[{"name":"Taylor M McCullough","is_ca":true},{"name":"Daniel Flores Orozco","is_ca":true},{"name":"Sean Walkowiak","is_ca":true},{"name":"Abdolvahab Farzan","is_ca":true},{"name":"Shahrokh Shekarriz","is_ca":true},{"name":"Michael G. Surette","is_ca":true},{"name":"Nazim Çiçek","is_ca":true},{"name":"Hooman Derakhshani","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01481519775000485,"gpt":0.2794423652536704,"spread":0.2646271675036656,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003068981,0.0004150484,0.000390705,0.001629074,0.001130291,0.0005778364,0.0004048565,0.000423927,0.0006921986],"category_scores_gemma":[0.0006473381,0.000210238,0.0005702165,0.002182641,0.0004922921,0.0001281001,0.0004760167,0.0002863983,0.0002399146],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002349127,"about_ca_system_score_gemma":0.004973526,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5454949,"about_ca_topic_score_gemma":0.6759641,"domain_scores_codex":[0.9994792,0.00001524869,0.00003026745,0.0001372212,0.0002073354,0.0001307426],"domain_scores_gemma":[0.9994074,0.00005084359,0.0001156731,0.00002770932,0.0002933541,0.0001050206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005197978,0.0001756707,0.4939497,0.0002986504,0.0001212393,0.002431978,0.002343087,0.000586745,0.4793491,0.0001582634,0.0006265885,0.01943917],"study_design_scores_gemma":[0.00001295098,0.0002434418,0.9852201,0.00002658926,0.00007001322,0.000879848,0.001182588,0.0004266771,0.008996094,0.00001531518,0.002913235,0.00001320314],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926512,0.0001693714,0.0006688886,0.00006280808,0.000007425178,0.0001099358,0.005376673,0.00001308411,0.0009405803],"genre_scores_gemma":[0.974277,0.0005367829,0.006139702,0.0001814068,0.00001346087,0.00009358598,0.01674964,0.00001916612,0.001989321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4545051,"threshold_uncertainty_score":0.9143636,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389817942","doi":"10.1186/s42523-023-00280-6","title":"Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest","year":2023,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; University of Calgary","funders":"Fundación Bancaria Caixa d'Estalvis i Pensions de Barcelona; Canada Research Chairs; H2020 Marie Skłodowska-Curie Actions; “la Caixa” Foundation","keywords":"Tropical forest; Biology; Flexibility (engineering); Ecology; Atlantic forest; Zoology; Mathematics; Statistics","authors":[{"name":"Shasta E. Webb","is_ca":true},{"name":"Joseph D. Orkin","is_ca":true},{"name":"Rachel E. Williamson","is_ca":true},{"name":"Amanda Melin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01708489810437167,"gpt":0.2965499243577902,"spread":0.2794650262534185,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002793694,0.0002609598,0.0003002334,0.0007817217,0.0005828045,0.0005251745,0.0002378839,0.000293823,0.0007837789],"category_scores_gemma":[0.000650615,0.0001763638,0.0002036074,0.0005165928,0.0005042057,0.0002861796,0.0003446148,0.0002077622,0.0001432998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003279636,"about_ca_system_score_gemma":0.000145856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009071384,"about_ca_topic_score_gemma":0.0341556,"domain_scores_codex":[0.9998572,0.0000314475,0.000008801128,0.00005349017,0.00001440814,0.00003456323],"domain_scores_gemma":[0.9996392,0.00005046924,0.0001417598,0.00002909942,0.00004457711,0.00009484107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001254856,0.00003486019,0.993568,0.0000155178,0.00007268474,0.0001094133,0.0005675165,0.00004749212,0.003457766,0.000008542725,0.00006146769,0.001931245],"study_design_scores_gemma":[6.970434e-7,0.00002390461,0.9996036,0.000001590021,0.000007889657,0.00005992255,0.0001672388,0.00006050557,0.0000311697,0.000005882575,0.00003660024,0.00000111234],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997483,0.00005743507,0.0000239942,0.000005816402,5.933448e-7,0.000001443167,0.00009107985,0.000001238604,0.00007010224],"genre_scores_gemma":[0.9995843,0.00003015155,0.00008832199,0.00001293558,0.00000282633,0.000006564926,0.0002053854,0.000001637768,0.0000678927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009071384,"threshold_uncertainty_score":0.01803714,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402005076","doi":"10.1186/s42523-024-00335-2","title":"Effects of dietary restriction and one-carbon metabolite supplementation during the first 63 days of gestation on the maternal gut, vaginal, and blood microbiota in cattle","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"North Dakota Agricultural Experiment Station; North Dakota State University; U.S. Department of Agriculture","keywords":"Metabolite; Gestation; Gut flora; Physiology; Biology; Pregnancy; Endocrinology; Microbiology; Internal medicine; Medicine; Immunology","authors":[{"name":"Sarah M. Luecke","is_ca":false},{"name":"Godson Aryee","is_ca":false},{"name":"Devin B. Holman","is_ca":true},{"name":"Kaycie N. Schmidt","is_ca":false},{"name":"Layla E King","is_ca":false},{"name":"Matthew S Crouse","is_ca":false},{"name":"Alison K Ward","is_ca":false},{"name":"Carl R Dahlen","is_ca":false},{"name":"Joel S Caton","is_ca":false},{"name":"Samat Amat","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006897682551322065,"gpt":0.235089914922665,"spread":0.228192232371343,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000311031,0.0003012053,0.0005186234,0.0002365969,0.0002894999,0.0004215888,0.0002345143,0.0003490679,0.0006936296],"category_scores_gemma":[0.0003201707,0.0002191514,0.0002396252,0.0001632622,0.000421563,0.0001788683,0.0002908122,0.0005136753,0.0001265546],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007765426,"about_ca_system_score_gemma":0.0005090728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006448958,"about_ca_topic_score_gemma":0.01628369,"domain_scores_codex":[0.9996716,0.00005957902,0.00002256027,0.00009964029,0.00006446809,0.00008225574],"domain_scores_gemma":[0.999568,0.00008223279,0.0001379521,0.00002866509,0.00004159799,0.0001414276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01172341,0.0005181649,0.01577943,0.0001287442,0.00005542085,0.00009599216,0.0002551592,0.0001078806,0.9646131,0.00002033793,0.00004798151,0.006654385],"study_design_scores_gemma":[0.0002116999,0.02599983,0.6729617,0.00005818573,0.0002867033,0.0003514915,0.0007954633,0.0008928741,0.2960608,0.00008708171,0.00225047,0.00004371317],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994016,0.0003065956,0.00008665462,0.0000127016,0.000003360759,0.000005532464,0.00008795595,0.000002693404,0.00009292198],"genre_scores_gemma":[0.997535,0.0004432336,0.0006688952,0.00005991796,0.000005420418,0.00003840012,0.0003271315,0.000005506008,0.000916476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006448958,"threshold_uncertainty_score":0.01282281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404312854","doi":"10.1186/s42523-024-00355-y","title":"Changes in social environment impact primate gut microbiota composition","year":2024,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Queen's University","keywords":"Primate; Gut flora; Composition (language); Biology; Ecology; Immunology","authors":[{"name":"Danielle L. Bukovsky","is_ca":true},{"name":"Katya Douchant","is_ca":true},{"name":"Abhay Katoch","is_ca":true},{"name":"Jill Greenlaw","is_ca":true},{"name":"Daniel J. Gale","is_ca":true},{"name":"Joseph Y. Nashed","is_ca":true},{"name":"Don Brien","is_ca":true},{"name":"Valerie A. Kuhlmeier","is_ca":true},{"name":"Mark A. Sabbagh","is_ca":true},{"name":"Gunnar Blohm","is_ca":true},{"name":"Fernanda G. De Felice","is_ca":true},{"name":"Martin Paré","is_ca":true},{"name":"Douglas J. Cook","is_ca":true},{"name":"Stephen H. Scott","is_ca":true},{"name":"Douglas P. Munoz","is_ca":true},{"name":"Calvin Sjaarda","is_ca":true},{"name":"Anita Tusche","is_ca":true},{"name":"Prameet M. Sheth","is_ca":true},{"name":"Andrew Winterborn","is_ca":true},{"name":"Susan E. Boehnke","is_ca":true},{"name":"Jason P. Gallivan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.010252162093144,"gpt":0.2913917247866639,"spread":0.2811395626935199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002786487,0.0002790324,0.0002997257,0.0005314078,0.0006667331,0.000612123,0.0002391315,0.0003998954,0.00150261],"category_scores_gemma":[0.0005529752,0.0001746084,0.0002333742,0.0002225165,0.0005861142,0.0002667761,0.0006504671,0.0004655362,0.0001899178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004062858,"about_ca_system_score_gemma":0.0003004021,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003127845,"about_ca_topic_score_gemma":0.008792181,"domain_scores_codex":[0.9997496,0.00006092363,0.00001084458,0.00007698157,0.00004486828,0.00005681816],"domain_scores_gemma":[0.9995942,0.00005359511,0.0001365655,0.00003883936,0.00006891652,0.0001080419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001011277,0.0003749072,0.613979,0.0001221779,0.0001896509,0.0005972415,0.001971778,0.0002253846,0.3635677,0.0001156042,0.0002718804,0.01757338],"study_design_scores_gemma":[0.000002336775,0.000424034,0.996016,0.00001120173,0.00002697782,0.0001557758,0.0004451369,0.0001586298,0.002394013,0.00005050933,0.000308913,0.000006365415],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994076,0.0001683112,0.00007650178,0.00001727074,0.000001964574,0.000005676416,0.00007287282,0.000003455159,0.0002464301],"genre_scores_gemma":[0.9990066,0.0001459395,0.0003227752,0.00004381075,0.000006067106,0.00002866747,0.0001940435,0.000004605213,0.0002475195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003127845,"threshold_uncertainty_score":0.006219268,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4413110826","doi":"10.1186/s42523-025-00452-6","title":"The influence of glutathione metabolism on alkaline adaptation of Amur ide (Leuciscus waleckii) and potential role of gut microbiota","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of Agriculture","funders":"Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences; National Natural Science Foundation of China","keywords":"Ecotype; Glutathione; Alkalinity; Glutathione peroxidase; Biology; Biochemistry; Antioxidant; Gut flora; Chemistry; Enzyme; Ecology","authors":[{"name":"Zou Yuting","is_ca":true},{"name":"Chenghao Li","is_ca":true},{"name":"Jing Huang","is_ca":true},{"name":"Haochen Yang","is_ca":true},{"name":"Liang Luo","is_ca":true},{"name":"Liew Honjung","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003720911474440377,"gpt":0.2087463755306263,"spread":0.205025464056186,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001185251,0.0004636335,0.0004471178,0.00042701,0.0003978242,0.0003992574,0.0001692417,0.000296329,0.000403027],"category_scores_gemma":[0.0001053356,0.0001436616,0.0003172767,0.0002464027,0.0002225956,0.0003346194,0.0005561901,0.0003636015,0.00009453308],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002365985,"about_ca_system_score_gemma":0.000234755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002050827,"about_ca_topic_score_gemma":0.004358451,"domain_scores_codex":[0.9998722,0.00001514488,0.00001032572,0.00004573279,0.00002456112,0.00003195649],"domain_scores_gemma":[0.9999225,0.000007734295,0.00002497106,0.000003562996,0.00001563034,0.00002570507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001062411,0.00001556718,0.004223314,0.00004460096,0.00001057072,0.00006176293,0.00008960235,0.00001934716,0.9945261,0.00001710076,0.00001117815,0.00087466],"study_design_scores_gemma":[0.00002055954,0.001106962,0.8100606,0.00002937288,0.0001075996,0.000373152,0.002028604,0.0009978001,0.1823063,0.0001791597,0.002744426,0.00004546958],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986946,0.0003709963,0.0002827645,0.00004175659,0.000006024236,0.00001130388,0.0002802073,0.00000865955,0.0003035808],"genre_scores_gemma":[0.9971896,0.0002976019,0.0007758239,0.0001010453,0.000005955583,0.00003076782,0.000615069,0.000007724499,0.0009764823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002050827,"threshold_uncertainty_score":0.004077733,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411509588","doi":"10.1186/s42523-025-00436-6","title":"Eukaryotic composition across seasons and social groups in the gut microbiota of wild baboons","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"Max-Planck-Institut für demografische Forschung; National Institute on Aging; University of Notre Dame; Princeton University; Leakey Foundation; National Geographic Society; National Institutes of Health; National Science Foundation","keywords":"Biology; Metagenomics; Gut flora; Zoology; Microbiome; Host (biology); Pyrosequencing; Feces; DNA sequencing; Shotgun sequencing; Ecology; Genetics; Gene; Immunology","authors":[{"name":"Mary Chege","is_ca":false},{"name":"Pamela Ferretti","is_ca":false},{"name":"Shasta E. Webb","is_ca":false},{"name":"Rosaline W. Macharia","is_ca":false},{"name":"George Obiero","is_ca":false},{"name":"Joseph Kamau","is_ca":false},{"name":"Susan C. Alberts","is_ca":false},{"name":"Jenny Tung","is_ca":true},{"name":"Mercy Y. Akinyi","is_ca":false},{"name":"Elizabeth A. Archie","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008623449470207031,"gpt":0.2828888484078227,"spread":0.2742653989376156,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003983011,0.0003165187,0.0002817535,0.0009460516,0.0006342681,0.0006833232,0.0001246433,0.0002599142,0.001031317],"category_scores_gemma":[0.0005832557,0.000256893,0.0001774107,0.00068349,0.0006162986,0.0003576543,0.0005617943,0.0002181884,0.0001986272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002879081,"about_ca_system_score_gemma":0.0002179732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0059819,"about_ca_topic_score_gemma":0.0129165,"domain_scores_codex":[0.9997242,0.00006953056,0.00002293529,0.00008091812,0.00003528147,0.00006712431],"domain_scores_gemma":[0.9995506,0.00004975162,0.0001928732,0.00001681513,0.00008284904,0.0001070997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002196564,0.00003135393,0.9774826,0.00003402977,0.00006376122,0.000139046,0.0008783267,0.0000440912,0.01832287,0.00001938164,0.00004199892,0.002722932],"study_design_scores_gemma":[0.000001186747,0.0000676475,0.9983735,0.000007832739,0.00001637049,0.000127624,0.0009222492,0.00006745572,0.0003023412,0.00001226353,0.00009879105,0.000002669256],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999568,0.0001425672,0.00005826536,0.000006469763,0.00000131159,0.000002590549,0.0001042068,0.00000118285,0.000115379],"genre_scores_gemma":[0.9992079,0.0001654456,0.000227718,0.00002530328,0.000003484103,0.00000846615,0.0002590522,0.000002078109,0.0001005605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0059819,"threshold_uncertainty_score":0.01189417,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407032154","doi":"10.1186/s42523-024-00369-6","title":"Environmental enrichment with nylon gnaw sticks introduces variation in Sprague Dawley rat immune and lower gastrointestinal parameters with differences between sexes","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Animal Behavior and Welfare Studies","field":"Veterinary","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Health Canada; Ontario Tech University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Health Canada","keywords":"Immune system; Variation (astronomy); Biology; Immunology; Physics","authors":[{"name":"Mark Wulczynski","is_ca":true},{"name":"Stephen P. J. Brooks","is_ca":true},{"name":"Judy Green","is_ca":true},{"name":"Fernando Matias","is_ca":true},{"name":"Martin Kalmokoff","is_ca":true},{"name":"Julia M. Green-Johnson","is_ca":true},{"name":"Sandra T. Clarke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01464484341401019,"gpt":0.24808715490231,"spread":0.2334423114882998,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003011209,0.000567486,0.0003144763,0.0005831457,0.000215106,0.0003520863,0.0002179958,0.0003451013,0.00226369],"category_scores_gemma":[0.0003919364,0.0002283695,0.0003657833,0.0001933431,0.0004650286,0.0002624749,0.0003579775,0.0007124922,0.0003474468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002466831,"about_ca_system_score_gemma":0.0003244368,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000941629,"about_ca_topic_score_gemma":0.003093623,"domain_scores_codex":[0.9995035,0.00006118459,0.00003587846,0.0001646221,0.0001556719,0.00007911474],"domain_scores_gemma":[0.9994094,0.00006282383,0.0002139622,0.00006445499,0.00009419881,0.000155043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002767087,0.0005693213,0.01355293,0.0001028207,0.00007214019,0.0001404754,0.0001208205,0.00006106061,0.9752204,0.0000976254,0.0001290426,0.007166218],"study_design_scores_gemma":[0.0001023976,0.01542957,0.4420567,0.0000940383,0.0003546391,0.0007468141,0.001161849,0.0006516086,0.5335218,0.0004235493,0.005376118,0.00008088686],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967403,0.0003706999,0.00164784,0.00005770527,0.00004514702,0.0000329617,0.0004006145,0.00004583205,0.0006588204],"genre_scores_gemma":[0.9882708,0.0006793227,0.004932702,0.0002241493,0.00002448998,0.0002067909,0.0007870709,0.00006153006,0.004813266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00226369,"threshold_uncertainty_score":0.00757283,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408893502","doi":"10.1186/s42523-026-00587-0","title":"The Bovine Ocular Microbiome: A Multi-Approach Study of Composition and Antimicrobial Activity","year":2025,"lang":"en","type":"preprint","venue":"Animal Microbiome","topic":"Ocular Infections and Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"North Dakota Agricultural Experiment Station","keywords":"Microbiome; Antimicrobial; Composition (language); Microbiology; Biology; Computational biology; Genetics; Art; Literature","authors":[{"name":"Samat Amat","is_ca":false},{"name":"Devin B. Holman","is_ca":true},{"name":"Sarah M. Luecke","is_ca":false},{"name":"Katherine E. Gzyl","is_ca":true},{"name":"Muhammad Anas","is_ca":false},{"name":"Gerald L. Stokka","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02063487880907805,"gpt":0.2983764413099401,"spread":0.2777415625008621,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006148583,0.0003412224,0.0005194049,0.0008839205,0.0006189676,0.0009897697,0.000209499,0.000556197,0.0006291215],"category_scores_gemma":[0.0004524502,0.0002057571,0.0003823433,0.0007640152,0.0003244402,0.0003278627,0.0006637204,0.0003497195,0.0001929543],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006958748,"about_ca_system_score_gemma":0.0004087624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005332271,"about_ca_topic_score_gemma":0.009927064,"domain_scores_codex":[0.9994001,0.0001093466,0.00002428317,0.0001739768,0.0001560386,0.0001361554],"domain_scores_gemma":[0.99968,0.00005240393,0.000109462,0.00002390482,0.00006995796,0.00006415719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006768709,0.0001872518,0.2584233,0.0002545019,0.0001706658,0.000155078,0.0009501683,0.0002489798,0.7152153,0.00007740136,0.0001621708,0.02347832],"study_design_scores_gemma":[0.000009431534,0.0007232488,0.9787284,0.00005741642,0.0001302674,0.0004959236,0.001121497,0.001077264,0.01535058,0.0000728701,0.002216663,0.00001646958],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953468,0.002395453,0.001027765,0.00005066537,0.000007781502,0.00002711174,0.0005570449,0.000009285223,0.0005779325],"genre_scores_gemma":[0.9931322,0.001153496,0.003900397,0.0001285388,0.00001054672,0.00003320237,0.001091979,0.000009256597,0.0005404121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005332271,"threshold_uncertainty_score":0.01060247,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4406964442","doi":"10.1186/s42523-024-00367-8","title":"Uropygial gland microbiota of nearctic−neotropical migrants vary with season and migration distance","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Indigenous Studies and Ecology","field":"Health Professions","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Nearctic ecozone; Biology; Zoology; Ecology; Winter season; Geography; Geology; Taxonomy (biology); Climatology","authors":[{"name":"Leanne A. Grieves","is_ca":true},{"name":"Gregory B. Gloor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0106908872554767,"gpt":0.3117651938652354,"spread":0.3010743066097588,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001992063,0.000177679,0.0001905276,0.0003474773,0.00037853,0.0004110352,0.00008740085,0.000185321,0.001651609],"category_scores_gemma":[0.0004253825,0.0001046357,0.0001708076,0.0002308043,0.0002848273,0.000184847,0.0003003468,0.0001823463,0.0001973603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001906253,"about_ca_system_score_gemma":0.0002035709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005557481,"about_ca_topic_score_gemma":0.01613045,"domain_scores_codex":[0.9998765,0.00003259269,0.000006203416,0.00004129552,0.00001670977,0.00002670483],"domain_scores_gemma":[0.9997509,0.00003154823,0.00009913189,0.00001566923,0.00003453847,0.00006814211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003207358,0.00003949346,0.9250175,0.00004453707,0.00005543245,0.0001182192,0.001472183,0.00004042031,0.06253186,0.00003426944,0.00009496376,0.01023042],"study_design_scores_gemma":[6.784401e-7,0.00008058405,0.9988835,0.000003489629,0.000005889032,0.00006073459,0.0005372856,0.0000211821,0.0002581115,0.000006403784,0.0001407384,0.000001293794],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996393,0.0001022208,0.00005962774,0.00001004704,0.000001691768,0.000002069438,0.00005136366,0.000001352835,0.0001323748],"genre_scores_gemma":[0.999099,0.0001240438,0.0002317792,0.00002173446,0.000002578844,0.000004539881,0.00008846545,0.000002176768,0.000425648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005557481,"threshold_uncertainty_score":0.01105028,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4413398247","doi":"10.1186/s42523-025-00451-7","title":"Subspecific variation in gut microbiota of North American bison in a sympatric setting reveals differentially abundant taxa","year":2025,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Trent University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Sympatric speciation; Taxon; Biology; Variation (astronomy); Zoology; Ecology","authors":[{"name":"Renée M. Petri","is_ca":true},{"name":"Tristan M. Baecklund","is_ca":true},{"name":"Gregory Wilson","is_ca":false},{"name":"Christopher J. Kyle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00507948235008109,"gpt":0.2465223826701929,"spread":0.2414429003201118,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001970442,0.0002512366,0.0002646246,0.0007790467,0.0006851243,0.0005060739,0.0001812922,0.0002256066,0.001012798],"category_scores_gemma":[0.0003488962,0.0001213211,0.0001595968,0.0006732162,0.0003333957,0.0002142337,0.0005606335,0.000267404,0.000136369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003190831,"about_ca_system_score_gemma":0.0002220724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01866469,"about_ca_topic_score_gemma":0.06856025,"domain_scores_codex":[0.9997453,0.00004873126,0.00001028959,0.0001232979,0.00003613282,0.00003625377],"domain_scores_gemma":[0.9997472,0.00003233802,0.00006913168,0.00002225043,0.00005015561,0.00007886837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005854483,0.0001078564,0.9010944,0.00004663799,0.0002678811,0.0001628531,0.001589789,0.0001258606,0.08518793,0.00008664648,0.0002388875,0.01050573],"study_design_scores_gemma":[0.000001343223,0.00002031839,0.9990643,0.000003257142,0.00001474597,0.00007872473,0.0003657883,0.00008419038,0.0001729748,0.00001547015,0.0001766349,0.000002391536],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997119,0.00005149502,0.00005179348,0.000005124094,0.000001087308,0.00000109594,0.00008077596,0.000001398085,0.00009530831],"genre_scores_gemma":[0.9989889,0.00005043059,0.0002672451,0.00002889056,0.000001929739,0.000006278107,0.0004578978,0.0000048576,0.0001935108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01866469,"threshold_uncertainty_score":0.03711212,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}