{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":12,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":12,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"38f76f48dc90","filters":{"venue":"Annual Review of Virology"}},"results":[{"id":"W2616853239","doi":"10.1146/annurev-virology-101416-041616","title":"The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs","year":2017,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":242,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"CRISPR; Biology; Trans-activating crRNA; Archaea; Plasmid; Genetics; Function (biology); Computational biology; Gene; DNA; Genome editing; RNA; Bacteriophage; Escherichia coli","authors":[{"name":"Adair L. Borges","is_ca":false},{"name":"Alan R. Davidson","is_ca":true},{"name":"Joseph Bondy‐Denomy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01671879033947082,"gpt":0.3972748609744031,"spread":0.3805560706349323,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004056462,0.0002847077,0.001260042,0.0000373964,0.00007456384,0.000007495213,0.0004490705,0.0002530343,0.000005517578],"category_scores_gemma":[0.0003182499,0.000171953,0.0006369749,0.00004244946,0.000243288,0.000004601469,0.000303793,0.0001438497,0.000002102076],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009049392,"about_ca_system_score_gemma":0.0002081573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002207735,"about_ca_topic_score_gemma":0.000003551168,"domain_scores_codex":[0.9986588,0.0001445312,0.0005758301,0.0002981294,0.0000994597,0.0002231854],"domain_scores_gemma":[0.9985076,0.00006603266,0.0005381751,0.0007513607,0.00008618351,0.0000506713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001464549,0.00004410987,0.00001119022,0.05231773,0.0007608435,0.000004020832,0.000008143853,0.00000381944,0.0006026036,0.0004444732,0.005995141,0.9397933],"study_design_scores_gemma":[0.00007540435,0.0004367812,0.0001558922,0.008352046,0.0004418617,0.0001006027,0.000003235713,8.420601e-7,0.00004094954,0.0000608403,0.9901634,0.0001681145],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00005037558,0.9985402,0.0004089934,0.00002999972,0.0001386005,0.0004017889,0.0003123157,0.000002262303,0.0001155167],"genre_scores_gemma":[0.0004514377,0.9989879,0.0001051535,0.00002549344,0.00008631707,0.00002932246,0.0001478065,0.00002657547,0.0001399779],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9841683,"threshold_uncertainty_score":0.7012039,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2883453009","doi":"10.1146/annurev-virology-092917-043356","title":"Baculovirus Entry and Egress from Insect Cells","year":2018,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":198,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Midgut; Infectivity; Phenotype; Virus; Virology; Budding; Host (biology); Cell biology; Glycoprotein; Insect; Viral replication; Viral entry; Viral envelope; Baculoviridae; DNA virus; Gene; Genetics; Recombinant DNA; Spodoptera; Genome","authors":[{"name":"Gary W. Blissard","is_ca":false},{"name":"David A. Theilmann","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01790382199867152,"gpt":0.3251803618787212,"spread":0.3072765398800497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000221048,0.0004670548,0.001612018,0.00006395337,0.00006212422,0.00001002821,0.0003786992,0.0006001504,0.0002758476],"category_scores_gemma":[0.0001730742,0.0003555207,0.0005954304,0.0001062886,0.0002974539,0.000004786629,0.0004575263,0.0002100817,0.00009501004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009714555,"about_ca_system_score_gemma":0.0001711899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005463957,"about_ca_topic_score_gemma":0.000009253436,"domain_scores_codex":[0.9975966,0.0004828497,0.0007628301,0.0007232144,0.0001370329,0.0002974943],"domain_scores_gemma":[0.9983045,0.00007512527,0.0006265802,0.0007122192,0.0001253985,0.0001562052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005271326,0.0001801598,0.00001218171,0.07871409,0.0006876548,0.00001818264,0.0000212533,8.336197e-8,0.001192818,0.00002325182,0.2033791,0.7157185],"study_design_scores_gemma":[0.0001549934,0.0005838054,0.000007651212,0.02184927,0.0006763099,0.00002867564,0.000002927457,1.167964e-7,0.0003538803,0.00003051566,0.9759929,0.0003189136],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003378091,0.9965044,0.00001422598,0.00001502302,0.000551639,0.000527344,0.001222011,0.00001004931,0.0008174477],"genre_scores_gemma":[0.00005531467,0.9968401,0.00007494048,0.001188752,0.0007255499,0.00009049245,0.0007271738,0.00005177444,0.0002458925],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7726138,"threshold_uncertainty_score":0.9998897,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2832854041","doi":"10.1146/annurev-virology-092917-043534","title":"Virus DNA Replication and the Host DNA Damage Response","year":2018,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":190,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Genome; DNA replication; Viral replication; DNA; DNA damage; DNA virus; DNA re-replication; DNA repair; Genetics; Control of chromosome duplication; Virus; Cell biology; Gene","authors":[{"name":"Matthew D. Weitzman","is_ca":false},{"name":"Amélie Fradet‐Turcotte","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02441861167844748,"gpt":0.3743660274768942,"spread":0.3499474157984467,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002332806,0.0003663785,0.002684678,0.0001302607,0.00008518305,0.000005801988,0.000290418,0.0004308843,0.0001663487],"category_scores_gemma":[0.003197114,0.0001865257,0.0006433735,0.0002971944,0.00113264,0.00004512333,0.0001796952,0.000406,0.0002156073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000308085,"about_ca_system_score_gemma":0.0003717333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000237794,"about_ca_topic_score_gemma":0.000001721275,"domain_scores_codex":[0.9964429,0.001466741,0.001056861,0.0005619569,0.0002073224,0.0002642361],"domain_scores_gemma":[0.9963043,0.0009591373,0.0008512253,0.001559654,0.00016354,0.0001621177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00184169,0.0002316124,0.000002033715,0.1545221,0.0008467052,0.00007703362,0.0001140178,1.446198e-9,0.00005130858,0.001025367,0.03143676,0.8098514],"study_design_scores_gemma":[0.0006197275,0.0004295552,0.0001679696,0.06170768,0.005069758,0.0003133413,0.000005676871,3.591128e-7,0.000004588805,0.0000287729,0.931506,0.0001466175],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002207078,0.9947523,0.0000013839,0.00166971,0.0001228822,0.001843182,0.0002966494,0.0000281559,0.001064974],"genre_scores_gemma":[0.00001728625,0.9951777,0.00001761591,0.003474717,0.0001959081,0.0001632423,0.0001428634,0.0000433692,0.0007672727],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9000692,"threshold_uncertainty_score":0.7606298,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2339092147","doi":"10.1146/annurev-virology-100114-055014","title":"A Cap-to-Tail Guide to mRNA Translation Strategies in Virus-Infected Cells","year":2016,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Ribosome; Translation (biology); Messenger RNA; Cell biology; Virus; Protein biosynthesis; Computational biology; RNA; Virology; Genetics; Gene","authors":[{"name":"Eric Jan","is_ca":true},{"name":"Ian Mohr","is_ca":false},{"name":"Derek Walsh","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02612936233538331,"gpt":0.3880516184925394,"spread":0.3619222561571561,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001193684,0.0005389307,0.001969355,0.0003546993,0.00003091642,0.00001177487,0.0007682903,0.0005619019,0.0002239541],"category_scores_gemma":[0.0002372459,0.000413199,0.0005172752,0.0005424758,0.0001133335,0.000009155056,0.000180589,0.0002862273,0.000403098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005546035,"about_ca_system_score_gemma":0.0008633713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005497567,"about_ca_topic_score_gemma":0.0006891761,"domain_scores_codex":[0.9959141,0.001083895,0.001287064,0.0008217779,0.0002760824,0.000617054],"domain_scores_gemma":[0.9981632,0.0001161022,0.000336935,0.00092956,0.0002426805,0.0002115814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000250058,0.00008232016,6.140289e-7,0.01863649,0.0001441366,0.00001198356,0.00003658842,0.000003364394,0.03523806,0.00001792372,0.007452842,0.9381256],"study_design_scores_gemma":[0.0002668631,0.003035441,0.000002587976,0.01689491,0.0001082241,0.00001217214,0.000006644506,1.460531e-7,0.002786732,0.0000128073,0.9764899,0.0003835775],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003328091,0.9956024,0.0001908433,0.0002879107,0.0001236145,0.002097942,0.0004944649,0.00001215336,0.0008578697],"genre_scores_gemma":[0.00003745261,0.9972669,0.0002292134,0.001213948,0.00020498,0.0003852767,0.0002648275,0.00008267997,0.0003147013],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9690371,"threshold_uncertainty_score":0.999832,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142367884","doi":"10.1146/annurev-virology-031413-085540","title":"Biogeography of Viruses in the Sea","year":2015,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":148,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Biogeography; Metacommunity; Ecology; Macroecology; Evolutionary biology; Microbial ecology; Taxon; Community; Host (biology); Ecosystem; Genetics; Biological dispersal","authors":[{"name":"Cheryl‐Emiliane T. Chow","is_ca":false},{"name":"Curtis A. Suttle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03816472779456101,"gpt":0.3678925671552486,"spread":0.3297278393606876,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008098112,0.0002032669,0.001337588,0.00007727675,0.00001587371,0.000002514343,0.0006027078,0.0001473748,0.001028425],"category_scores_gemma":[0.00008471007,0.0001183119,0.0004673471,0.0005312005,0.000323176,0.00008021221,0.0001858305,0.000256679,0.0002575048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002630711,"about_ca_system_score_gemma":0.00003127965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004874852,"about_ca_topic_score_gemma":0.00009661735,"domain_scores_codex":[0.9981756,0.0005398598,0.0007549737,0.0002219582,0.0001308596,0.0001768166],"domain_scores_gemma":[0.9988236,0.0001638851,0.0005442168,0.0004174502,0.00001859354,0.00003226438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000297975,0.0001537247,0.00003663764,0.01986443,0.00004277681,0.000006334806,0.00008463889,9.333369e-8,0.00002577428,0.00003508064,0.01930496,0.9604425],"study_design_scores_gemma":[0.00003364608,0.0001152536,0.0002078188,0.01084662,0.0002605949,0.0000459923,0.00001105703,2.232979e-8,0.000001302998,0.00001829248,0.9883697,0.00008968617],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00005515369,0.9957393,0.000001053386,0.00008058309,0.0001100029,0.0005398183,0.000319952,0.000003392053,0.003150727],"genre_scores_gemma":[0.00002159282,0.9986617,0.00004562662,0.001126459,0.0000218677,0.00004772687,0.00004283293,0.00001154125,0.00002066025],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9690648,"threshold_uncertainty_score":0.9998848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2588754019","doi":"10.1146/annurev-virology-101416-041624","title":"The Distribution, Evolution, and Roles of Gene Transfer Agents in Prokaryotic Genetic Exchange","year":2017,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":120,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Memorial University of Newfoundland","funders":"Canadian Institutes of Health Research","keywords":"Biology; Horizontal gene transfer; Gene; Genome; Rhodobacter; Genetics; Organism; Bacteriophage; Evolutionary biology; Escherichia coli","authors":[{"name":"Andrew S. Lang","is_ca":true},{"name":"Alexander B. Westbye","is_ca":true},{"name":"J. Thomas Beatty","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03085296540843419,"gpt":0.3335984544937367,"spread":0.3027454890853025,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003813475,0.0002087356,0.001005697,0.00002559402,0.0001028004,0.000006819461,0.0004061423,0.0001469641,0.0002545407],"category_scores_gemma":[0.0001095807,0.0001362262,0.0002164972,0.0001039832,0.0005013852,0.00008280479,0.0001449207,0.0001857374,0.0000431262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007663975,"about_ca_system_score_gemma":0.00003665598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001751177,"about_ca_topic_score_gemma":0.0003605008,"domain_scores_codex":[0.9983822,0.0002819368,0.0007497499,0.000273499,0.00009394559,0.0002186897],"domain_scores_gemma":[0.9990745,0.00008081815,0.0003552915,0.0004217405,0.00002301854,0.00004462496],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004151588,0.00006224687,0.00004780918,0.01578131,0.0000412394,0.000004079808,0.00005157659,2.958132e-7,0.00003290388,0.0000266908,0.001437282,0.9825104],"study_design_scores_gemma":[0.000067111,0.00008163177,0.01189755,0.00918232,0.00028128,0.0000624569,0.000003851309,7.788822e-7,0.000001995803,0.00001676757,0.978299,0.0001052204],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003294949,0.9980366,0.00005498273,0.000119978,0.0001128467,0.0007964533,0.0004168734,0.00000279242,0.0001300351],"genre_scores_gemma":[0.0004997585,0.9990579,0.00002016195,0.00005122661,0.00002481511,0.00008851891,0.00007604048,0.00001268953,0.0001688513],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9824052,"threshold_uncertainty_score":0.5555142,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119948288","doi":"10.1146/annurev-virology-031413-085532","title":"Viral Manipulation of Plant Host Membranes","year":2014,"lang":"en","type":"article","venue":"Annual Review of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Plasmodesma; Cell biology; Intracellular; Viral replication; RNA; Virus; Viral protein; Movement protein; Plant virus; Viral structural protein; Viral entry; Virology; Biochemistry; Gene; Coat protein; Cytoplasm","authors":[{"name":"Jean‐François Laliberté","is_ca":true},{"name":"Huanquan Zheng","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02746292968025106,"gpt":0.2826840085308608,"spread":0.2552210788506098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004474215,0.00007432308,0.0003364682,0.000009786185,0.00003646682,0.000001482436,0.0001758164,0.00004531407,0.0001490555],"category_scores_gemma":[0.0003477068,0.00002568312,0.00007170714,0.00009914969,0.0001054286,0.00005215819,0.00007602313,0.00005616118,0.00002356921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003125861,"about_ca_system_score_gemma":0.000002889984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001369059,"about_ca_topic_score_gemma":0.0001133922,"domain_scores_codex":[0.9991152,0.0001785306,0.0002652613,0.0001259047,0.0001616703,0.0001534195],"domain_scores_gemma":[0.999358,0.0003483333,0.000140356,0.00004483182,0.00007798449,0.00003051328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001042058,0.000132748,0.00216215,0.002677686,0.00005517768,0.000003544866,0.00008245432,0.000001304332,0.9250307,0.003380531,0.00751268,0.05885679],"study_design_scores_gemma":[0.0002158713,0.001947532,0.3186755,0.001397674,0.00005577461,0.00002179638,0.00007639315,0.00006454148,0.01847367,0.0006616849,0.6581731,0.0002364462],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9655477,0.02867834,0.000003016437,0.002612305,0.00006680332,0.0002975769,0.0009226452,0.0000181329,0.001853501],"genre_scores_gemma":[0.9395512,0.05940784,0.00002234003,0.00073114,0.00008233491,0.000009914889,0.0001420317,4.833676e-7,0.00005268386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9065571,"threshold_uncertainty_score":0.1632054,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2957622437","doi":"10.1146/annurev-virology-092818-015843","title":"The Biological Impact of the Hypervariable N-Terminal Region of Potyviral Genomes","year":2019,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Biology; Genome; Genetics; Hypervariable region; Picornaviridae; Picornavirus; Virology; Open reading frame; Frameshift mutation; RNA; Genomic organization; Polyproteins; Gene; Peptide sequence; Mutation","authors":[{"name":"Hongguang Cui","is_ca":false},{"name":"Aiming Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1044006197700728,"gpt":0.3714065678635664,"spread":0.2670059480934937,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001065685,0.0003125586,0.002360288,0.00001687204,0.0001225339,0.000005167097,0.001444636,0.0002727871,0.00009952521],"category_scores_gemma":[0.0008319446,0.00006323113,0.001438403,0.0004600585,0.0007554681,0.00004233725,0.0006624504,0.0003647081,0.00002728841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003259963,"about_ca_system_score_gemma":0.0001135359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000158428,"about_ca_topic_score_gemma":0.00001908088,"domain_scores_codex":[0.9967955,0.001219078,0.0009780206,0.0003100175,0.0002885281,0.0004088524],"domain_scores_gemma":[0.9961106,0.002191187,0.00118785,0.0002682533,0.0001958874,0.00004626816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003069163,0.00006995175,0.0001010072,0.01299047,0.0002785791,0.00000663852,0.00000955206,8.848048e-8,0.0003353533,0.0001774598,0.005591283,0.9804089],"study_design_scores_gemma":[0.00003451959,0.001022135,0.001205613,0.0102965,0.0002387012,0.0001326862,0.00001089313,2.151673e-7,0.000004291056,0.00005992914,0.9868749,0.000119651],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001596802,0.9955233,5.251166e-8,0.0001983085,0.00009159557,0.0009494641,0.001233786,0.000005006203,0.0004016816],"genre_scores_gemma":[0.0004044213,0.9991081,0.000003311302,0.00007176199,0.0000881621,0.00003779146,0.00006972244,0.000001670325,0.0002150666],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9812836,"threshold_uncertainty_score":0.2783554,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2956367114","doi":"10.1146/annurev-virology-092818-015523","title":"Fusogenic Reoviruses and Their Fusion-Associated Small Transmembrane (FAST) Proteins","year":2019,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Fusion mechanism; Transmembrane protein; Lipid bilayer fusion; Membrane protein; Viral envelope; Cell biology; Transmembrane domain; Viral entry; Effector; Fusion protein; Viral replication; Virus; Virology; Genetics; Membrane; Gene","authors":[{"name":"Roy Duncan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06415007368323987,"gpt":0.3708444840075896,"spread":0.3066944103243497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001586433,0.0006464636,0.006954877,0.0002651971,0.00005094115,0.000004705966,0.0003857291,0.0006826477,0.0003594805],"category_scores_gemma":[0.001985418,0.000411223,0.001191302,0.0003289738,0.0004175986,0.00005409444,0.0002263284,0.001040887,0.0001364593],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006524449,"about_ca_system_score_gemma":0.0004775324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006800477,"about_ca_topic_score_gemma":0.00004586078,"domain_scores_codex":[0.9948575,0.001689969,0.00166628,0.0007564222,0.0002032452,0.0008265304],"domain_scores_gemma":[0.9976436,0.0003259012,0.000768339,0.0007072738,0.000233699,0.000321221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008141077,0.0001495426,0.00002016954,0.2247164,0.0005082811,0.00004464406,0.00002516771,9.151591e-9,0.00003935688,0.00001798255,0.001408131,0.7729889],"study_design_scores_gemma":[0.0006292436,0.002831395,0.00006542428,0.1226326,0.001091713,0.0006199557,0.000009563752,0.000001017068,0.000001580485,0.00001909523,0.8718933,0.0002051188],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002086332,0.9940424,0.00002289204,0.0008910133,0.0001177451,0.003598669,0.0006790509,0.00003845079,0.0004011495],"genre_scores_gemma":[0.00004321362,0.995649,0.0001214302,0.002677705,0.0001283684,0.0002743548,0.0005845116,0.00007820725,0.0004431933],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8704852,"threshold_uncertainty_score":0.9998339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2323926712","doi":"10.1146/annurev-virology-110615-042409","title":"Unraveling the Mysterious Interactions Between Hepatitis C Virus RNA and Liver-Specific MicroRNA-122","year":2016,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; microRNA; Virology; RNA; Hepatitis C virus; Virus; Genetics; Computational biology; Evolutionary biology; Gene","authors":[{"name":"Peter Sarnow","is_ca":false},{"name":"Selena M. Sagan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02090297914127793,"gpt":0.3170082781431596,"spread":0.2961052990018816,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004147323,0.0003936228,0.001264138,0.0000804443,0.0000940269,0.00001414819,0.0004296729,0.0003152085,0.00004593777],"category_scores_gemma":[0.0001712005,0.0002519323,0.0004792153,0.000110093,0.0002895796,0.000008478184,0.0003522297,0.0002225041,0.00009481536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003649689,"about_ca_system_score_gemma":0.0001319114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003405601,"about_ca_topic_score_gemma":0.00002195602,"domain_scores_codex":[0.997568,0.0005986163,0.0009077044,0.0005345925,0.0001186948,0.00027242],"domain_scores_gemma":[0.9980245,0.0001750159,0.0008273922,0.000712671,0.0001724809,0.00008797429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007026773,0.00003148718,0.000008293898,0.0177372,0.0002914766,0.000005454592,0.00001758713,1.726663e-8,0.00175631,0.0000345212,0.005114281,0.9749963],"study_design_scores_gemma":[0.0001273076,0.000117659,0.00009991321,0.02267507,0.0005367007,0.0001198251,0.000002148847,1.125396e-7,0.000202771,0.00001357351,0.9758672,0.0002377032],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004674567,0.9970829,0.0002861233,0.0001471361,0.0002146308,0.0008136556,0.000902931,0.00001622676,0.00006889096],"genre_scores_gemma":[0.0002762275,0.9981394,0.00008556894,0.0002781645,0.0005532788,0.00009143974,0.0003910399,0.00008461972,0.0001002617],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9747586,"threshold_uncertainty_score":0.9999933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4400179445","doi":"10.1146/annurev-virology-100422-125123","title":"Diverse Antiphage Defenses Are Widespread Among Prophages and Mobile Genetic Elements","year":2024,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Prophage; Biology; Lysogenic cycle; Genome; Temperateness; Mobile genetic elements; Genetics; Bacterial genome size; Host (biology); Bacteriophage; Evolutionary biology; Gene; Escherichia coli","authors":[{"name":"Landon J. Getz","is_ca":true},{"name":"Karen L. Maxwell","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01413613482219867,"gpt":0.3215100141627824,"spread":0.3073738793405837,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002268497,0.0004234901,0.001548196,0.00007538864,0.00007632661,0.00002016165,0.000326055,0.0002062069,0.002059663],"category_scores_gemma":[0.00006814163,0.000306487,0.000398514,0.000228268,0.0004502257,0.0001581135,0.0007927524,0.0003398756,0.0009624358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006134149,"about_ca_system_score_gemma":0.0000212117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001224771,"about_ca_topic_score_gemma":0.00005759807,"domain_scores_codex":[0.9978405,0.0002334207,0.0008340854,0.0006071748,0.0001331092,0.0003517403],"domain_scores_gemma":[0.9988032,0.00008592744,0.0006068401,0.0003849136,0.00001740752,0.0001016916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002134253,0.0000725996,0.00007147351,0.06145331,0.0001389818,0.0001090942,0.00006501775,1.448997e-7,0.00008934428,0.000002119599,0.01243995,0.9255558],"study_design_scores_gemma":[0.00004714544,0.0001815891,0.001109158,0.03663192,0.001771345,0.0001498084,0.00002820373,3.731544e-7,0.000004225635,0.000004977775,0.9598354,0.0002359302],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002968492,0.99461,0.000002702106,0.00001651976,0.0003241272,0.001271726,0.0004844868,0.0000259451,0.000295975],"genre_scores_gemma":[0.000283009,0.9979997,0.0001700433,0.0002503454,0.00005128661,0.0002059475,0.00005089073,0.00004339655,0.0009453972],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9473954,"threshold_uncertainty_score":0.9999387,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411642213","doi":"10.1146/annurev-virology-092623-111016","title":"CRISPR-Cas in the Cheese Industry","year":2025,"lang":"en","type":"review","venue":"Annual Review of Virology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"CRISPR; Biology; Streptococcus thermophilus; Cas9; Dairy industry; Genome editing; Function (biology); Computational biology; Bacteria; Biotechnology; Microbiology; Genetics; Gene; Lactic acid; Food science","authors":[{"name":"Audrey Leprince","is_ca":true},{"name":"Sylvain Moineau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01354223700719929,"gpt":0.4108074305440037,"spread":0.3972651935368044,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006789146,0.0003133792,0.001225529,0.00009465665,0.00001852202,0.000003790919,0.0006741009,0.0007951882,0.0000351977],"category_scores_gemma":[0.0005118938,0.0002115619,0.0004260569,0.0003057081,0.00008068814,0.000001476535,0.0002061514,0.0006401751,0.00001121034],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001013459,"about_ca_system_score_gemma":0.0002261031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009975237,"about_ca_topic_score_gemma":0.0000122006,"domain_scores_codex":[0.998216,0.0003476214,0.000690792,0.0003682386,0.0001112124,0.0002661688],"domain_scores_gemma":[0.9989209,0.00007769455,0.000198413,0.0007141084,0.00005439857,0.00003452785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004227534,0.00006880822,0.000006833227,0.1422548,0.0001090515,0.00001585275,0.00003545074,0.000001733707,0.00003235477,0.0001136351,0.01848399,0.8388733],"study_design_scores_gemma":[0.00007282665,0.0001169956,0.0000372845,0.02407115,0.0002882574,0.00005419491,0.000018188,1.261362e-7,0.00002260846,0.000007720248,0.9751465,0.0001641139],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001473969,0.9970872,0.00006351002,0.0001769492,0.0001550274,0.0006286402,0.00008404146,0.00000360887,0.001786328],"genre_scores_gemma":[0.00005578451,0.9977655,0.00004163309,0.001315333,0.0001631391,0.0001561253,0.0001965626,0.00001951296,0.0002864283],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9566625,"threshold_uncertainty_score":0.8627243,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}