{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1024,"total_is_capped":false,"direct_labels_cover":2,"predictions_cover":1024,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"42b60e7a324a","filters":{"venue":"Antimicrobial Agents and Chemotherapy"}},"results":[{"id":"W2099837668","doi":"10.1128/aac.00419-13","title":"The Comprehensive Antibiotic Resistance Database","year":2013,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2300,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada; McMaster University","funders":"Canadian Institutes of Health Research; Aeronautics Research and Development Board","keywords":"Antibiotic resistance; Genome; Biology; Genomics; Antibiotics; Computational biology; Bacterial genome size; Genetics; Database; Gene; Computer science","authors":[{"name":"Andrew G. McArthur","is_ca":false},{"name":"Nicholas Waglechner","is_ca":true},{"name":"Fazmin Nizam","is_ca":true},{"name":"Austin Yan","is_ca":true},{"name":"Marisa Ann Azad","is_ca":true},{"name":"Alison J. Baylay","is_ca":false},{"name":"Kirandeep Bhullar","is_ca":true},{"name":"Marc J. Canova","is_ca":true},{"name":"Gianfranco De Pascale","is_ca":true},{"name":"Linda Ejim","is_ca":true},{"name":"Lindsay Kalan","is_ca":true},{"name":"Andrew King","is_ca":true},{"name":"Kalinka Koteva","is_ca":true},{"name":"Mariya Morar","is_ca":true},{"name":"Michael R. Mulvey","is_ca":true},{"name":"J O’Brien","is_ca":true},{"name":"A Pawłowski","is_ca":true},{"name":"Laura J. V. Piddock","is_ca":false},{"name":"Peter Spanogiannopoulos","is_ca":true},{"name":"Arlene D. Sutherland","is_ca":true},{"name":"Irene Tang","is_ca":true},{"name":"Patricia L. Taylor","is_ca":true},{"name":"Maulik Thaker","is_ca":true},{"name":"Wenliang Wang","is_ca":true},{"name":"Marie Yan","is_ca":true},{"name":"Tennison Yu","is_ca":true},{"name":"Gerard D. Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009336776061689917,"gpt":0.2406568790540845,"spread":0.2313201029923946,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002251645,0.001697279,0.002247899,0.01063414,0.001165711,0.003747222,0.003338082,0.002518573,0.02803095],"category_scores_gemma":[0.008361407,0.0007364194,0.001009889,0.01015732,0.0004428821,0.003178228,0.00266547,0.001928026,0.03279558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00139971,"about_ca_system_score_gemma":0.00578701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005149065,"about_ca_topic_score_gemma":0.005904899,"domain_scores_codex":[0.9977506,0.0003095501,0.0006807055,0.0004318031,0.0006650664,0.0001622078],"domain_scores_gemma":[0.9956663,0.001059013,0.000739476,0.0008815339,0.001070029,0.0005836734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001120738,0.0003904103,0.007830316,0.00628014,0.0003361986,0.0006285458,0.0002778368,0.002564354,0.01454876,0.01620846,0.7537211,0.1960931],"study_design_scores_gemma":[0.0001807159,0.00008173259,0.004924678,0.0004627997,0.0001293287,0.0005173606,0.00007899924,0.002080061,0.003388646,0.004860174,0.9832132,0.0000821361],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.005477671,0.006238786,0.01608451,0.001272872,0.0001715968,0.0005028535,0.9234294,0.01869567,0.02812666],"genre_scores_gemma":[0.007123177,0.002729631,0.02306144,0.0006872816,0.00005767036,0.0003290416,0.9622337,0.0009433639,0.002834714],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.02803095,"threshold_uncertainty_score":0.09377289,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1951178169","doi":"10.1128/aac.01019-15","title":"Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance","year":2015,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":837,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Klebsiella pneumoniae; Microbiology; Pathogen; Human pathogen; Efflux; Plasmid; Antibiotic resistance; Biology; Bacteria; Escherichia coli; Gene; Antibiotics; Genetics","authors":[{"name":"Johann Pitout","is_ca":true},{"name":"Patrice Nordmann","is_ca":false},{"name":"Laurent Poirel","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03142116446440326,"gpt":0.3242588461390674,"spread":0.2928376816746641,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004442783,0.000714337,0.001082625,0.00199339,0.0003167085,0.001135779,0.0007440729,0.001046442,0.004009503],"category_scores_gemma":[0.0006368363,0.0002419983,0.0003827777,0.00193876,0.0005018964,0.001339952,0.0007731273,0.001563077,0.002991862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005928134,"about_ca_system_score_gemma":0.001553333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001063031,"about_ca_topic_score_gemma":0.001714545,"domain_scores_codex":[0.9997857,0.00002903061,0.00002776203,0.00003800574,0.00009186945,0.00002753827],"domain_scores_gemma":[0.999637,0.0001034884,0.00005991398,0.00001590144,0.0001208011,0.00006287182],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005256297,0.00004791594,0.0002551544,0.01181542,0.00006064715,0.0002275219,0.00005239212,0.0002282071,0.002550066,0.003368157,0.03448169,0.9468604],"study_design_scores_gemma":[0.00000675697,0.00004926819,0.0005732311,0.001587729,0.00004498489,0.0010524,0.00004223329,0.00004542314,0.0004102354,0.001237763,0.9949393,0.00001064816],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001534185,0.9980249,0.000149921,0.0003331816,0.0001756968,0.00000306809,0.0000234306,0.00001402105,0.00112237],"genre_scores_gemma":[0.0009324164,0.9978473,0.0001788694,0.0001695748,0.000114937,0.000003189078,0.00004595131,0.000002149327,0.0007054783],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004009503,"threshold_uncertainty_score":0.01341319,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105838577","doi":"10.1128/aac.00834-10","title":"Colistin Resistance in <i>Acinetobacter baumannii</i> Is Mediated by Complete Loss of Lipopolysaccharide Production","year":2010,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":792,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"National Health and Medical Research Council; Medical Research Council; Sungkyunkwan University","keywords":"Colistin; Acinetobacter baumannii; Polymyxin; Lipid A; Microbiology; Lipopolysaccharide; Bacteria; Antibiotics; Polymyxin B; Biology; Efflux; Gram-negative bacteria; Multiple drug resistance; Pseudomonas aeruginosa; Gene; Escherichia coli; Immunology; Genetics","authors":[{"name":"Jennifer H. Moffatt","is_ca":false},{"name":"Marina Harper","is_ca":false},{"name":"Paul F. Harrison","is_ca":false},{"name":"John Hale","is_ca":false},{"name":"Evgeny Vinogradov","is_ca":true},{"name":"Torsten Seemann","is_ca":false},{"name":"Rebekah Henry","is_ca":false},{"name":"Bethany Crane","is_ca":false},{"name":"Frank St. Michael","is_ca":true},{"name":"Andrew D. Cox","is_ca":true},{"name":"Ben Adler","is_ca":false},{"name":"Roger L. Nation","is_ca":false},{"name":"Jian Li","is_ca":false},{"name":"John D. Boyce","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007287593472446576,"gpt":0.2346555694797309,"spread":0.2273679760072843,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001384447,0.000314966,0.0001815202,0.0002556464,0.0001931647,0.0003644432,0.0001918121,0.0002381901,0.0004863736],"category_scores_gemma":[0.0002691076,0.0001239321,0.0002081215,0.0002531071,0.0002271425,0.0001472832,0.0001936617,0.0004134286,0.0002507365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002857235,"about_ca_system_score_gemma":0.0002683459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00136875,"about_ca_topic_score_gemma":0.001434323,"domain_scores_codex":[0.9997821,0.00004822344,0.00003041635,0.00002935541,0.00007416779,0.00003579788],"domain_scores_gemma":[0.9998834,0.00001509353,0.00004229409,0.00002232301,0.00001699719,0.00001975745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007742647,0.00004594867,0.002205135,0.00002609663,0.000006350614,0.0001595119,0.00002225162,0.0001301244,0.9951917,0.00008914188,0.00005536403,0.001990877],"study_design_scores_gemma":[0.00001290904,0.0004100244,0.01648267,0.000009735854,0.00002180479,0.003082468,0.00009139036,0.0006988126,0.9770891,0.00008558263,0.002004525,0.00001097957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974524,0.0004971733,0.001142799,0.00009178905,0.00001269403,0.00002025798,0.0002311647,0.00003952782,0.0005120977],"genre_scores_gemma":[0.9960606,0.000437406,0.002154289,0.00003266805,0.000005651392,0.00001587246,0.0006685944,0.00001878609,0.0006059918],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00136875,"threshold_uncertainty_score":0.002721608,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149571529","doi":"10.1128/aac.46.8.2668-2670.2002","title":"Chemiosmotic Mechanism of Antimicrobial Activity of Ag <sup>+</sup> in <i>Vibrio cholerae</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":741,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; American Lebanese Syrian Associated Charities; National Cancer Institute; Manitoba Health Research Council","keywords":"Vibrio cholerae; Antimicrobial; Microbiology; Vibrionaceae; Mechanism of action; Chemistry; Bacteria; Biology; Biochemistry; In vitro; Genetics","authors":[{"name":"Pavel Dibrov","is_ca":true},{"name":"Judith Dzioba","is_ca":true},{"name":"Khoosheh K. Gosink","is_ca":false},{"name":"Claudia C. Häse","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0149833420675594,"gpt":0.2449192704992495,"spread":0.2299359284316901,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008607449,0.0002424935,0.0001462379,0.00009877092,0.0001272116,0.0001817486,0.0002370096,0.0003989483,0.0008190657],"category_scores_gemma":[0.00007823597,0.0001069458,0.0001512521,0.00005104079,0.0002747455,0.0001912921,0.0001583335,0.0003672335,0.0003238771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001962958,"about_ca_system_score_gemma":0.00009026154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001849194,"about_ca_topic_score_gemma":0.0001304087,"domain_scores_codex":[0.9999579,0.000008976442,0.000003109171,0.000006083898,0.00001045001,0.00001339094],"domain_scores_gemma":[0.9999689,0.000006344545,0.000008150659,0.000004017601,0.000007000183,0.000005568231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001171193,0.00001110757,0.00009510082,0.00006885248,0.000002504211,0.00006469733,0.0000115343,0.00009969171,0.9982873,0.0003574426,0.00004498174,0.0008396825],"study_design_scores_gemma":[0.00002202116,0.0002227793,0.001712763,0.000005526021,0.000006217624,0.000223218,0.00002424452,0.000357723,0.9963545,0.0002783745,0.0007893527,0.000003494983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839961,0.005365137,0.005530487,0.0005094625,0.00006974841,0.00005924752,0.000229142,0.0001589346,0.004081775],"genre_scores_gemma":[0.9974222,0.0008517895,0.0007113439,0.00007349972,0.0000100846,0.00002101583,0.00007962584,0.000005227219,0.0008252072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008190657,"threshold_uncertainty_score":0.002740026,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019349925","doi":"10.1128/aac.00627-10","title":"Systematic Review and Meta-Analysis of the Efficacy of Appropriate Empiric Antibiotic Therapy for Sepsis","year":2010,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":724,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Rothschild Caesarea Foundation","keywords":"Medicine; Confidence interval; Odds ratio; Confounding; Meta-analysis; Internal medicine; Septic shock; Observational study; Sepsis; Covariate; Subgroup analysis; Intensive care medicine; Statistics","authors":[{"name":"Mical Paul","is_ca":false},{"name":"Vered Shani","is_ca":false},{"name":"Eli Muchtar","is_ca":false},{"name":"Galia Kariv","is_ca":false},{"name":"Eyal Robenshtok","is_ca":false},{"name":"Leonard Leibovici","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1381191258184947,"gpt":0.3968186222600314,"spread":0.2586994964415367,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02690679,0.003310358,0.0240419,0.01001513,0.0007150566,0.004067145,0.002379607,0.002636418,0.002752329],"category_scores_gemma":[0.07695816,0.001702898,0.03734217,0.00767106,0.001058339,0.002296369,0.00181301,0.002431579,0.000305505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004936709,"about_ca_system_score_gemma":0.006802266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007439262,"about_ca_topic_score_gemma":0.01347378,"domain_scores_codex":[0.9705316,0.01821083,0.006686483,0.001761191,0.002359339,0.0004506193],"domain_scores_gemma":[0.9577774,0.03317547,0.005291381,0.001034573,0.002364397,0.0003568118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001622187,0.00002227031,0.001952734,0.4298124,0.5496271,0.0001267991,0.0000696783,0.0008646067,0.0001711782,0.0002034048,0.0009408804,0.01458684],"study_design_scores_gemma":[0.0006581572,0.0001897327,0.002460119,0.03777297,0.9561036,0.0001061985,0.00003064195,0.0003317512,0.0001491494,0.0003658081,0.001806863,0.00002504609],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003249996,0.9946754,0.0005656913,0.0002427374,0.0002137095,0.0003706032,0.0004332766,0.00002818835,0.000220374],"genre_scores_gemma":[0.1388028,0.8520364,0.004425669,0.001091646,0.0003615844,0.001974616,0.0009476834,0.00004400004,0.0003156465],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02690679,"threshold_uncertainty_score":0.1422984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974883267","doi":"10.1128/aac.02176-12","title":"Meta-Analysis of Antibiotics and the Risk of Community-Associated Clostridium difficile Infection","year":2013,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":582,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Public Health Ontario; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Clindamycin; Medicine; Internal medicine; Clostridium difficile; Antibiotics; Odds ratio; Relative risk; Trimethoprim; Confidence interval; Microbiology; Biology","authors":[{"name":"Kevin A. Brown","is_ca":true},{"name":"Nagham Khanafer","is_ca":false},{"name":"Nick Daneman","is_ca":true},{"name":"David N. Fisman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1170948168252477,"gpt":0.3565604292036232,"spread":0.2394656123783755,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02042448,0.00354589,0.02091325,0.00839329,0.0006479482,0.004699099,0.002498743,0.002942294,0.002749183],"category_scores_gemma":[0.04268825,0.00192109,0.05945174,0.008143247,0.0005528313,0.001739012,0.001838102,0.002734222,0.0003642698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002383619,"about_ca_system_score_gemma":0.002683214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005628138,"about_ca_topic_score_gemma":0.006894083,"domain_scores_codex":[0.9819028,0.01108591,0.003649758,0.001501157,0.001460532,0.000399776],"domain_scores_gemma":[0.9703075,0.02330003,0.003014478,0.001341058,0.001628073,0.0004089292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001573025,0.0000175505,0.003714162,0.03933852,0.9511411,0.00009579345,0.00001829846,0.0007630907,0.00010833,0.00007626861,0.0002317332,0.002922136],"study_design_scores_gemma":[0.0002645704,0.0001067065,0.002288651,0.002523627,0.9935767,0.00005655379,0.00001262099,0.0004341405,0.00006644152,0.0001840722,0.000473097,0.00001277734],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009825683,0.987135,0.001302414,0.0002935746,0.0004216008,0.0001512085,0.0004919809,0.00005255709,0.0003260443],"genre_scores_gemma":[0.3983992,0.5919504,0.004611125,0.001257892,0.0008169189,0.0009146934,0.001326904,0.00009777329,0.000625173],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02091325,"threshold_uncertainty_score":0.1080163,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043841254","doi":"10.1128/aac.00615-10","title":"Resistance of Herpes Simplex Viruses to Nucleoside Analogues: Mechanisms, Prevalence, and Management","year":2010,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":555,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Famciclovir; Penciclovir; Virology; Foscarnet; Biology; Thymidine kinase; Herpes simplex virus; Cidofovir; Nucleoside analogue; Mutant; Virus; Nucleoside; Herpesviridae; Gene; Viral disease; Genetics","authors":[{"name":"Jocelyne Piret","is_ca":true},{"name":"Guy Boivin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03317067015618014,"gpt":0.3355746104633714,"spread":0.3024039403071913,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001471761,0.0004063553,0.0005312719,0.001113047,0.0002468828,0.001133525,0.0007981004,0.0006797208,0.001623039],"category_scores_gemma":[0.003149253,0.0001709557,0.0002560792,0.001035396,0.0003957504,0.0008703952,0.0004386941,0.0007199603,0.0007894314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000698683,"about_ca_system_score_gemma":0.0005677273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00105934,"about_ca_topic_score_gemma":0.0004988216,"domain_scores_codex":[0.9990689,0.0002229152,0.0001546708,0.0001460871,0.0003260909,0.000081304],"domain_scores_gemma":[0.9988513,0.0002589666,0.000371372,0.00007652996,0.0003280558,0.0001137063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00050025,0.0002439762,0.1094645,0.001843048,0.00008238569,0.001467083,0.0005678327,0.0004726221,0.01432106,0.002135901,0.005742003,0.8631594],"study_design_scores_gemma":[0.0001292088,0.002939674,0.4115024,0.005019441,0.0006626114,0.1137445,0.00349567,0.004429343,0.04431196,0.007774646,0.4057538,0.0002367212],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.2340095,0.7402231,0.007588779,0.004117569,0.0002722411,0.0001903458,0.0006813129,0.0002707388,0.01264645],"genre_scores_gemma":[0.7357513,0.2552084,0.004362816,0.000663883,0.0005271673,0.0001105023,0.0007295518,0.0000492559,0.002597193],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001623039,"threshold_uncertainty_score":0.007783473,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110189329","doi":"10.1128/aac.00789-12","title":"High-Throughput Sequencing Reveals the Incomplete, Short-Term Recovery of Infant Gut Microbiota following Parenteral Antibiotic Treatment with Ampicillin and Gentamicin","year":2012,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":502,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Gentamicin; Bifidobacterium; Antibiotics; Biology; Ampicillin; Gut flora; Population; Microbiology; Lactobacillus; Medicine; Immunology; Bacteria","authors":[{"name":"Fiona Fouhy","is_ca":false},{"name":"Caitriona M. Guinane","is_ca":false},{"name":"Séamus Hussey","is_ca":true},{"name":"Rebecca Wall","is_ca":false},{"name":"C. Anthony Ryan","is_ca":false},{"name":"Eugene Dempsey","is_ca":false},{"name":"Brendan P. Murphy","is_ca":false},{"name":"R. Paul Ross","is_ca":false},{"name":"Gerald F. Fitzgerald","is_ca":false},{"name":"Catherine Stanton","is_ca":false},{"name":"Paul D. Cotter","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01824257394354187,"gpt":0.263209616858225,"spread":0.2449670429146831,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002593839,0.0001833827,0.0003889748,0.0002875485,0.0001637838,0.0003543414,0.0001674514,0.0003711945,0.0003550199],"category_scores_gemma":[0.001033151,0.000139042,0.000228871,0.0002679428,0.0001877199,0.0001333113,0.0002450036,0.0002908047,0.0001645958],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001340914,"about_ca_system_score_gemma":0.0001519054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001069121,"about_ca_topic_score_gemma":0.0009896721,"domain_scores_codex":[0.9996932,0.00008113413,0.00002607377,0.00004551568,0.0001062173,0.00004789083],"domain_scores_gemma":[0.9995705,0.000120383,0.0001530836,0.00003481688,0.00007288977,0.00004822293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001654407,0.00008440275,0.09058069,0.0001025039,0.00005183237,0.0006688823,0.0004123935,0.000183239,0.8938903,0.00002537964,0.00006665749,0.01227938],"study_design_scores_gemma":[0.000008265232,0.001234244,0.9091293,0.00001915046,0.00008271087,0.001449139,0.0005812414,0.0008932305,0.08607321,0.00002660254,0.0004913131,0.00001163208],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993452,0.000191201,0.0003070374,0.000009782506,0.000001844674,0.000003221799,0.0000549168,0.000005119894,0.00008170555],"genre_scores_gemma":[0.9986584,0.0001884183,0.0006689649,0.00002256523,0.00000267606,0.00001338053,0.0002207942,0.000003892419,0.0002209501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001069121,"threshold_uncertainty_score":0.0021258,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130885148","doi":"10.1128/aac.44.8.2086-2092.2000","title":"Antibacterial Action of Structurally Diverse Cationic Peptides on Gram-Positive Bacteria","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":466,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada","keywords":"Peptide; Biochemistry; Antimicrobial peptides; Bacteria; Bacterial cell structure; Biology; Amino acid; Antimicrobial; Microbiology; Staphylococcus aureus; Biophysics; Chemistry","authors":[{"name":"Carol L. Friedrich","is_ca":true},{"name":"Dianne Moyles","is_ca":true},{"name":"Terry J. Beveridge","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01372041547517682,"gpt":0.2444548600014521,"spread":0.2307344445262753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001858086,0.0003536438,0.0002382982,0.0002298794,0.0001049752,0.000172426,0.0001578837,0.0003338178,0.0004056612],"category_scores_gemma":[0.0002487852,0.00008398899,0.0001982216,0.0001448023,0.0001695179,0.0001606153,0.0001953719,0.0002372966,0.0001102501],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001285156,"about_ca_system_score_gemma":0.00007890444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001005687,"about_ca_topic_score_gemma":0.0001518712,"domain_scores_codex":[0.9998716,0.00003867485,0.000009477933,0.00002223313,0.00003111298,0.00002684921],"domain_scores_gemma":[0.9998584,0.00003836232,0.000028816,0.00001219946,0.00002008834,0.00004201841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006916991,0.00001378791,0.0001103662,0.00003948436,0.000003105442,0.00003199142,0.000005317015,0.0000884559,0.9978904,0.00001352044,0.000007620079,0.00172674],"study_design_scores_gemma":[0.00003784054,0.002769819,0.01020677,0.0000245414,0.00002657065,0.0007719879,0.00003551984,0.0006196764,0.9839441,0.00006501959,0.001488956,0.00000907837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952809,0.003261835,0.0006658151,0.00003075183,0.00001437886,0.00002131607,0.00007884364,0.00001249192,0.0006337198],"genre_scores_gemma":[0.9952041,0.001747154,0.0023947,0.00008915813,0.0000124346,0.00002286525,0.000188876,0.000004760352,0.0003360362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004056612,"threshold_uncertainty_score":0.001357079,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117064229","doi":"10.1128/aac.49.2.479-487.2005","title":"Aminoglycoside Resistance in<i>Pseudomonas aeruginosa</i>","year":2005,"lang":"he","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":461,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Aminoglycoside; Pseudomonas aeruginosa; Cystic fibrosis; Antibiotics; Microbiology; Medicine; Chemotherapy; Biology; Internal medicine; Bacteria","authors":[{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01548738558234701,"gpt":0.2821498558327731,"spread":0.2666624702504261,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004410315,0.0006619087,0.00103052,0.001201661,0.0002204361,0.0007731557,0.0006395433,0.001177739,0.001885762],"category_scores_gemma":[0.0005624257,0.0001704447,0.0002396592,0.00131182,0.0005641005,0.0008082804,0.0003788085,0.001376505,0.002780605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005305986,"about_ca_system_score_gemma":0.000697119,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001150438,"about_ca_topic_score_gemma":0.001794066,"domain_scores_codex":[0.9997864,0.00003683856,0.00003093141,0.00003932988,0.00008689964,0.00001950717],"domain_scores_gemma":[0.999761,0.00008757078,0.00005195414,0.00001015602,0.00006489197,0.00002446918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005811976,0.00003513676,0.0002020011,0.004495488,0.00002256704,0.0003970986,0.00003825202,0.0001388,0.001967381,0.002178018,0.03400179,0.9564654],"study_design_scores_gemma":[0.00001429677,0.00008577791,0.0009406232,0.001572211,0.0000425432,0.004138274,0.00003344921,0.00005464791,0.001099837,0.001166787,0.9908398,0.00001180348],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001506713,0.9972835,0.0002137199,0.0003794394,0.000258774,0.000003149218,0.00001015124,0.0000114023,0.00168917],"genre_scores_gemma":[0.001419256,0.9961141,0.0001968024,0.0003152331,0.0004427766,0.000004505302,0.00002479637,0.000002214936,0.001480333],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001885762,"threshold_uncertainty_score":0.006308556,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109328764","doi":"10.1128/aac.00064-12","title":"Inhibition of Bacterial Biofilm Formation and Swarming Motility by a Small Synthetic Cationic Peptide","year":2012,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":459,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; McMaster University; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biofilm; Microbiology; Swarming motility; Pseudomonas aeruginosa; Peptide; Quorum sensing; Biology; Bacteria; Swarming (honey bee); Antimicrobial; Chemistry; Biochemistry","authors":[{"name":"César de la Fuente‐Núñez","is_ca":true},{"name":"Victoria Korolik","is_ca":false},{"name":"Manjeet Bains","is_ca":true},{"name":"Uyen Nguyen","is_ca":true},{"name":"Elena B. M. Breidenstein","is_ca":true},{"name":"Shawn R Horsman","is_ca":true},{"name":"Shawn Lewenza","is_ca":true},{"name":"Lori L. Burrows","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01291166501272571,"gpt":0.2178130715660593,"spread":0.2049014065533336,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000156794,0.0003143564,0.0001657547,0.0001419792,0.0000711809,0.0001734981,0.000131557,0.0002411429,0.0006411948],"category_scores_gemma":[0.0001312182,0.00009470505,0.0001575095,0.0001065162,0.0001807178,0.0001062397,0.0001509797,0.0002822471,0.0001568722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001419152,"about_ca_system_score_gemma":0.0001540743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001837839,"about_ca_topic_score_gemma":0.0002741022,"domain_scores_codex":[0.9998891,0.00002644371,0.000008970621,0.00001603777,0.00003863568,0.00002085668],"domain_scores_gemma":[0.9999216,0.00002522773,0.00001911668,0.000005045474,0.00001048791,0.00001861633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003883917,0.00002291887,0.00005888357,0.00002473714,0.000001527858,0.00002404962,0.0000027487,0.00006306973,0.9985628,0.0000241376,0.00001011497,0.00116627],"study_design_scores_gemma":[0.0000286063,0.001368716,0.002482052,0.00001013154,0.000009114576,0.0002952471,0.00001522382,0.001031435,0.9930378,0.00003360349,0.001683014,0.000004964956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940438,0.002377093,0.002431992,0.00006366698,0.00001563509,0.0000368107,0.000115875,0.00002057027,0.0008946695],"genre_scores_gemma":[0.990978,0.001377308,0.005813299,0.00008221498,0.000009724424,0.00005482405,0.0003674277,0.000008704257,0.001308433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006411948,"threshold_uncertainty_score":0.002144992,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034546252","doi":"10.1128/aac.44.2.231-238.2000","title":"Correlation between the Resistance Genotype Determined by Multiplex PCR Assays and the Antibiotic Susceptibility Patterns of <i>Staphylococcus aureus</i> and <i>Staphylococcus epidermidis</i>","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":425,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Medical Research Council; Huashan Hospital; Medical Research Council Canada; Wellcome Trust","keywords":"Microbiology; Biology; Staphylococcus aureus; Staphylococcus epidermidis; Erythromycin; SCCmec; Gentamicin; Antibiotic resistance; Antibiotics; Genotype; Multiplex polymerase chain reaction; Gene; Methicillin-resistant Staphylococcus aureus; Bacteria; Polymerase chain reaction; Genetics","authors":[{"name":"Francis Martineau","is_ca":true},{"name":"François J. Picard","is_ca":true},{"name":"Nicolas Lansac","is_ca":true},{"name":"Christian Ménard","is_ca":true},{"name":"Paul H. Roy","is_ca":true},{"name":"Marc Ouellette","is_ca":true},{"name":"Michel G. Bergeron","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0107146102887817,"gpt":0.2456661652594717,"spread":0.23495155497069,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007517636,0.0003700755,0.0002815891,0.001060076,0.0001401321,0.0005674782,0.0002360602,0.0004666974,0.00156243],"category_scores_gemma":[0.004544103,0.0002766866,0.0001756283,0.0004973478,0.000220599,0.0002914028,0.0002281398,0.0004162613,0.0004104068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001506165,"about_ca_system_score_gemma":0.00009739975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004630748,"about_ca_topic_score_gemma":0.0004569933,"domain_scores_codex":[0.9984803,0.0003377911,0.0002556735,0.0004159001,0.0003648814,0.0001455026],"domain_scores_gemma":[0.9961309,0.001474634,0.001444163,0.0002441132,0.0005008149,0.0002052751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006088905,0.00009936158,0.8160256,0.00008230336,0.0001121747,0.0003536249,0.0002211487,0.000350754,0.1713093,0.00007027994,0.0002185802,0.01054796],"study_design_scores_gemma":[0.00001249614,0.0007622073,0.929271,0.00003280347,0.0001098997,0.005830661,0.0003564215,0.002623886,0.05950584,0.0001053673,0.001363616,0.00002589117],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978094,0.0003415911,0.0009394026,0.00004646514,0.00001053643,0.00001088289,0.000306233,0.00001755325,0.0005179808],"genre_scores_gemma":[0.9977115,0.0001025037,0.001494369,0.00003059521,0.000008977184,0.00001421776,0.0003736514,0.000004776726,0.0002593655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00156243,"threshold_uncertainty_score":0.005226791,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025175179","doi":"10.1128/aac.45.2.428-432.2001","title":"Cross-Resistance between Triclosan and Antibiotics in <i>Pseudomonas aeruginosa</i> Is Mediated by Multidrug Efflux Pumps: Exposure of a Susceptible Mutant Strain to Triclosan Selects <i>nfxB</i> Mutants Overexpressing MexCD-OprJ","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial agents and applications","field":"Chemistry","cited_by":421,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Efflux; Triclosan; Pseudomonas aeruginosa; Microbiology; Multiple drug resistance; Mutant; Bacteria; Ciprofloxacin; Biology; Antibacterial agent; Antibiotics; Cross-resistance; Chemistry; Biochemistry; Medicine; Gene; Genetics","authors":[{"name":"Rungtip Chuanchuen","is_ca":false},{"name":"Kerry Beinlich","is_ca":false},{"name":"Tung T. Hoang","is_ca":true},{"name":"Anna Becher","is_ca":false},{"name":"RoxAnn R. Karkhoff-Schweizer","is_ca":false},{"name":"Herbert P. Schweizer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01091858233866755,"gpt":0.2611134135010341,"spread":0.2501948311623666,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001600483,0.0003757657,0.0003729858,0.0002670321,0.0001423295,0.00030794,0.0002887873,0.0002921971,0.001040939],"category_scores_gemma":[0.0002677719,0.0002386309,0.0003412028,0.0003063643,0.0001712422,0.0001825385,0.0003361136,0.0004203275,0.0003638406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003817229,"about_ca_system_score_gemma":0.0001664071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001464327,"about_ca_topic_score_gemma":0.00137257,"domain_scores_codex":[0.9995395,0.00008197339,0.00005620152,0.00008011512,0.0001530355,0.00008922498],"domain_scores_gemma":[0.9997638,0.00003905461,0.00007174684,0.00004501777,0.00004170298,0.00003867116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004725718,0.00003187151,0.0002575945,0.00001517175,0.000005330512,0.00004566693,0.00001190655,0.00001694083,0.9988399,0.00002409294,0.00002348059,0.0006807232],"study_design_scores_gemma":[0.000008129661,0.0004259667,0.008208946,0.000005728011,0.00001673339,0.0006900591,0.00004502397,0.0003424716,0.9893932,0.0000205843,0.0008359509,0.000007243965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976991,0.0004114972,0.0007755121,0.00007012115,0.00001265398,0.00002290852,0.0002058064,0.00003311157,0.0007693582],"genre_scores_gemma":[0.9949898,0.0004040363,0.001550416,0.00005896355,0.000007073302,0.00003445006,0.0008361778,0.00003106106,0.002087984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001464327,"threshold_uncertainty_score":0.003482282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127806652","doi":"10.1128/aac.46.4.1032-1037.2002","title":"Antifungal Activities of Posaconazole, Ravuconazole, and Voriconazole Compared to Those of Itraconazole and Amphotericin B against 239 Clinical Isolates of <i>Aspergillus</i> spp. and Other Filamentous Fungi: Report from SENTRY Antimicrobial Surveillance Program, 2000","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":402,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Pfizer Pharmaceuticals; Strong; University of Louisville; University of Alberta; Bristol-Myers Squibb; University of Washington; Pfizer","keywords":"Posaconazole; Voriconazole; Microbiology; Amphotericin B; Aspergillus terreus; Itraconazole; Broth microdilution; Aspergillus flavus; Biology; Aspergillus versicolor; Aspergillus; Aspergillus fumigatus; Aspergillus niger; Fusarium; Rhizopus; Mucor; Antimicrobial; Minimum inhibitory concentration; Botany; Antifungal; Food science","authors":[{"name":"Michael A. Pfaller","is_ca":false},{"name":"S. A. Messer","is_ca":false},{"name":"R. J. Hollis","is_ca":false},{"name":"Ronald N. Jones","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02644777505410591,"gpt":0.3006878265014094,"spread":0.2742400514473035,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004242111,0.0003615983,0.0003486894,0.0003380236,0.0001877101,0.0003173638,0.0002645186,0.0003511707,0.0004700063],"category_scores_gemma":[0.0008773429,0.0001366327,0.0002673551,0.0004437363,0.0002414157,0.0001575089,0.00009779874,0.0003182009,0.000149015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004698379,"about_ca_system_score_gemma":0.0004494381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003669398,"about_ca_topic_score_gemma":0.006098432,"domain_scores_codex":[0.9993449,0.0001516002,0.00009306819,0.00007944958,0.0002770055,0.00005402269],"domain_scores_gemma":[0.9995396,0.000135461,0.0001233568,0.00001704177,0.0000955589,0.00008905413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01132825,0.001915289,0.1314396,0.001032291,0.0005344697,0.001574362,0.0006500548,0.001369769,0.710335,0.0001082821,0.002217102,0.1374955],"study_design_scores_gemma":[0.001003192,0.04770256,0.6100855,0.0001127851,0.000835588,0.0109264,0.0004319236,0.002631423,0.3167532,0.00006843915,0.009385356,0.00006349719],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936528,0.005552876,0.0001053976,0.00006506783,0.000010011,0.00001422188,0.0001806091,0.000008886431,0.0004099695],"genre_scores_gemma":[0.994848,0.003210748,0.0004477326,0.00006804735,0.00002280536,0.0000101702,0.001006851,0.000002551658,0.0003831603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003669398,"threshold_uncertainty_score":0.007296085,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100137309","doi":"10.1128/aac.48.10.3758-3764.2004","title":"Complete Nucleotide Sequence of a 92-Kilobase Plasmid Harboring the CTX-M-15 Extended-Spectrum Beta-Lactamase Involved in an Outbreak in Long-Term-Care Facilities in Toronto, Canada","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":384,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University Health Network; Vancouver General Hospital; Health Canada","funders":"","keywords":"Plasmid; Transposable element; Biology; Insertion sequence; Escherichia coli; Tetracycline; Gene; Beta-lactamase; Point mutation; Nucleic acid sequence; Outbreak; Transposition (logic); Genetics; Virology; Mutation; Genome; Antibiotics","authors":[{"name":"David A. Boyd","is_ca":true},{"name":"Shaun Tyler","is_ca":true},{"name":"Sara Christianson","is_ca":true},{"name":"Allison McGeer","is_ca":false},{"name":"Matthew Muller","is_ca":false},{"name":"Barbara Willey","is_ca":false},{"name":"Elizabeth Bryce","is_ca":true},{"name":"Michael Gardam","is_ca":true},{"name":"Patrice Nordmann","is_ca":false},{"name":"Michael R. Mulvey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01282471187842423,"gpt":0.2507708408021581,"spread":0.2379461289237339,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007409722,0.0005562331,0.0004395493,0.0009116412,0.0007491072,0.0004532907,0.0005454019,0.0003960319,0.003063091],"category_scores_gemma":[0.0003595229,0.0002388756,0.000410264,0.001580059,0.0003536304,0.0001224816,0.0001820407,0.0005794256,0.001506213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003247565,"about_ca_system_score_gemma":0.003316895,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.3307266,"about_ca_topic_score_gemma":0.3974745,"domain_scores_codex":[0.9998494,0.000008155284,0.00001503613,0.00002943824,0.00006772774,0.00003022938],"domain_scores_gemma":[0.9996194,0.00003631654,0.00006815205,0.00001554326,0.0001381796,0.0001223596],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001565341,0.0003882522,0.02910974,0.0009593906,0.00007778069,0.003637573,0.001694362,0.001238175,0.927376,0.0009763657,0.005126308,0.02785074],"study_design_scores_gemma":[0.0002872508,0.0009961288,0.7977574,0.0004283443,0.0002339457,0.002497967,0.001522117,0.002537758,0.08682478,0.0002033065,0.106577,0.0001339191],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8714359,0.002157514,0.007161241,0.0004921415,0.0002559714,0.001116879,0.1042535,0.0002495554,0.01287727],"genre_scores_gemma":[0.8111611,0.001486507,0.0137134,0.0002775727,0.00004889807,0.000228729,0.1626365,0.00008567567,0.01036154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6692734,"threshold_uncertainty_score":0.6576031,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984156594","doi":"10.1128/aac.44.3.747-751.2000","title":"Bloodstream Infections Due to <i>Candida</i> Species: SENTRY Antimicrobial Surveillance Program in North America and Latin America, 1997-1998","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":377,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Latin Americans; Itraconazole; Fungemia; Fluconazole; Candida glabrata; Corpus albicans; Candida albicans; Medicine; Candida krusei; Candida parapsilosis; Microbiology; Biology; Antifungal","authors":[{"name":"Michael A. Pfaller","is_ca":false},{"name":"Ronald N. Jones","is_ca":false},{"name":"Gary V. Doern","is_ca":false},{"name":"Hélio S. Sader","is_ca":false},{"name":"S. A. Messer","is_ca":false},{"name":"A. Houston","is_ca":false},{"name":"Stacy L. Coffman","is_ca":false},{"name":"R. J. Hollis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007527494857301025,"gpt":0.2371647798849499,"spread":0.2296372850276489,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007638686,0.0002550341,0.0001597729,0.0009735178,0.0002824127,0.0004993991,0.0004374937,0.0001794042,0.0005383447],"category_scores_gemma":[0.001626619,0.0001545594,0.0001653954,0.001467777,0.0002311143,0.0002979752,0.0004288206,0.000298067,0.0001088546],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002102927,"about_ca_system_score_gemma":0.001730875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.233644,"about_ca_topic_score_gemma":0.2580749,"domain_scores_codex":[0.9995741,0.00006774933,0.00004293713,0.00006998491,0.0001526091,0.00009258876],"domain_scores_gemma":[0.9981208,0.0001185861,0.0006597298,0.00004506671,0.0007844016,0.00027139],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007790148,0.0000289553,0.9879863,0.00003570619,0.00002926551,0.00007302049,0.0003247097,0.0000574581,0.0004134586,0.00001820384,0.001236546,0.009718616],"study_design_scores_gemma":[0.000008213404,0.00003218111,0.9978493,0.00002761164,0.00001482541,0.0001265934,0.0003843835,0.00008496893,0.000153934,0.000004665596,0.001311233,0.000002119912],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878817,0.002385436,0.0003222598,0.0006108056,0.0000234455,0.00008199046,0.003268872,0.00005649661,0.005369011],"genre_scores_gemma":[0.9912378,0.00204816,0.0008466333,0.0003940813,0.00002882372,0.00007497596,0.004520393,0.00001069949,0.0008384152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.233644,"threshold_uncertainty_score":0.4645681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2008827129","doi":"10.1128/aac.44.9.2233-2241.2000","title":"Efflux-Mediated Resistance to Fluoroquinolones in Gram-Negative Bacteria","year":2000,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":370,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Gram-negative bacteria; Respiratory tract infections; Medicine; Microbiology; Urinary system; Efflux; Antibiotics; Respiratory tract; Biology; Internal medicine; Respiratory system; Escherichia coli","authors":[{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01573338953934058,"gpt":0.2880681839353971,"spread":0.2723347943960566,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008055223,0.001092617,0.001652246,0.001769323,0.0003131408,0.001215808,0.001089297,0.001507436,0.001755602],"category_scores_gemma":[0.0008949648,0.0003468577,0.0003727157,0.002097583,0.0007972965,0.001900324,0.0005672454,0.001589039,0.00205668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007547745,"about_ca_system_score_gemma":0.0007930645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001046852,"about_ca_topic_score_gemma":0.00170766,"domain_scores_codex":[0.9997569,0.00004031966,0.00003892995,0.00004657111,0.00009486779,0.00002240607],"domain_scores_gemma":[0.999582,0.0001781993,0.00006191339,0.00001718627,0.000126235,0.00003451443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007835694,0.00007053125,0.0002204283,0.009107119,0.00005309825,0.0004793467,0.00006179604,0.0003821842,0.003565061,0.002455898,0.03152075,0.9520054],"study_design_scores_gemma":[0.00002706416,0.000110952,0.0008856512,0.002145444,0.00007817827,0.002920483,0.00005960168,0.0001339767,0.001199026,0.00143739,0.9909814,0.00002071322],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001373739,0.9979432,0.0003449807,0.0002129107,0.0003637683,0.000003959257,0.000009394841,0.00001209451,0.0009724046],"genre_scores_gemma":[0.000618793,0.9976748,0.0003195196,0.0001972278,0.0002723944,0.000004740803,0.00001918715,0.000001876125,0.0008914844],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001769323,"threshold_uncertainty_score":0.005873024,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3047492649","doi":"10.1128/aac.01148-20","title":"Emerging Antimicrobial-Resistant High-Risk Klebsiella pneumoniae Clones ST307 and ST147","year":2020,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":354,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Klebsiella pneumoniae; Antimicrobial; Microbiology; Klebsiella infections; Biology; Klebsiella; Virology; Escherichia coli; Gene; Genetics","authors":[{"name":"Gisele Peirano","is_ca":true},{"name":"Liang Chen","is_ca":false},{"name":"Barry N. Kreiswirth","is_ca":false},{"name":"Johann Pitout","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01131331823205254,"gpt":0.2697395353827064,"spread":0.2584262171506538,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004958485,0.000731745,0.001155224,0.0021717,0.0002085299,0.001067524,0.0007496622,0.001062288,0.003502725],"category_scores_gemma":[0.0007879952,0.0002733229,0.0004983874,0.00180789,0.0003922558,0.001129032,0.0006314896,0.001419398,0.0024157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005624713,"about_ca_system_score_gemma":0.001154326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001196449,"about_ca_topic_score_gemma":0.002097229,"domain_scores_codex":[0.9997733,0.00003755125,0.00003778648,0.00004148846,0.00008334256,0.00002655023],"domain_scores_gemma":[0.9996326,0.000146637,0.00006041519,0.000009928181,0.0001143716,0.00003598199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00007994643,0.00003533548,0.0002709184,0.01692079,0.00006687314,0.0002001618,0.00004564311,0.000210147,0.001216055,0.001981593,0.03362972,0.9453427],"study_design_scores_gemma":[0.00001458002,0.00007517536,0.001417327,0.00473382,0.0001066471,0.002106999,0.00005332226,0.00007959046,0.000408522,0.00101479,0.9899688,0.00002033958],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001133743,0.9985505,0.00008504809,0.0002184909,0.0001657521,0.00000339347,0.00002422336,0.000007140629,0.0008320812],"genre_scores_gemma":[0.0006286288,0.9984035,0.0001063163,0.000179965,0.0001157853,0.000004412423,0.00005522132,0.000001453541,0.0005047627],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003502725,"threshold_uncertainty_score":0.0117178,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149623513","doi":"10.1128/aac.44.12.3317-3321.2000","title":"Interactions of Bacterial Cationic Peptide Antibiotics with Outer and Cytoplasmic Membranes of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":344,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Polymyxin; Pseudomonas aeruginosa; Polymyxin B; Gramicidin S; Gramicidin; Bacterial outer membrane; Depolarization; Cytoplasm; Peptide; Lipopolysaccharide; Microbiology; Biology; Biochemistry; Membrane; Bacteria; Chemistry; Antibiotics; Biophysics; Escherichia coli; Immunology","authors":[{"name":"Lijuan Zhang","is_ca":true},{"name":"Pawandeep Dhillon","is_ca":true},{"name":"Hong Yan","is_ca":true},{"name":"Susan Walker Farmer","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007555936655136642,"gpt":0.214991635100486,"spread":0.2074356984453493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001254682,0.0002198821,0.0001523824,0.0000671286,0.0001291861,0.0002388977,0.0001325609,0.0002508548,0.0006491421],"category_scores_gemma":[0.0002740854,0.00008702086,0.0001096009,0.00008693279,0.0001903347,0.0001952514,0.0001931179,0.0003442808,0.0002402444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002446957,"about_ca_system_score_gemma":0.0001412311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003893363,"about_ca_topic_score_gemma":0.0003499358,"domain_scores_codex":[0.999822,0.00005538321,0.000007779401,0.00001718769,0.00004615386,0.00005157441],"domain_scores_gemma":[0.99985,0.00006239155,0.00003384938,0.000008433397,0.00002041204,0.0000248963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009498742,0.000009687938,0.000138943,0.0000267782,0.000002566603,0.00003410593,0.00001446859,0.00003113824,0.9986861,0.00005032529,0.00002137785,0.0008894817],"study_design_scores_gemma":[0.00001839309,0.000492989,0.006067463,0.0000152943,0.000008105128,0.0003371565,0.00009363257,0.0005505139,0.9907084,0.00005993216,0.001641509,0.000006624525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972542,0.0007590436,0.0005894343,0.00005459969,0.0000105777,0.00001060713,0.00005523334,0.000008217356,0.001258183],"genre_scores_gemma":[0.9977527,0.0005073887,0.0009646044,0.00006196764,0.000005465515,0.00001453372,0.0001559696,0.000005686874,0.000531654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006491421,"threshold_uncertainty_score":0.002171636,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2096559689","doi":"10.1128/aac.46.3.605-614.2002","title":"Sublethal Concentrations of Pleurocidin-Derived Antimicrobial Peptides Inhibit Macromolecular Synthesis in <i>Escherichia coli</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":341,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Peptide; Escherichia coli; Biochemistry; Antimicrobial peptides; Lysis; Minimum inhibitory concentration; Liposome; Biology; Chemistry; Membrane; Thymidine; Antibiotics; In vitro","authors":[{"name":"Aleksander Patrzykat","is_ca":true},{"name":"Carol L. Friedrich","is_ca":true},{"name":"Lijuan Zhang","is_ca":true},{"name":"Valentina Mendoza","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0143419356794911,"gpt":0.2156175684570431,"spread":0.201275632777552,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001113915,0.0003058186,0.0001835944,0.00007344993,0.00005405132,0.0001758219,0.0001392442,0.0002644657,0.0005118162],"category_scores_gemma":[0.0001340711,0.00008739876,0.0001120501,0.00006228402,0.0001423013,0.0001284529,0.0001179551,0.0003375225,0.0001728065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001265546,"about_ca_system_score_gemma":0.00007545328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002734285,"about_ca_topic_score_gemma":0.0003463663,"domain_scores_codex":[0.9999069,0.00002402043,0.000009245126,0.00001722901,0.00002252709,0.00001996265],"domain_scores_gemma":[0.9998863,0.00004389033,0.00003010922,0.00001000584,0.00001217613,0.00001746016],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000495698,0.00001592388,0.00006623185,0.00001581867,0.000001760423,0.000008545464,0.000004361225,0.0000325867,0.9994316,0.000009044593,0.00000534867,0.0003592465],"study_design_scores_gemma":[0.000003660126,0.0003907978,0.001315821,0.000001679191,0.000002667752,0.00003205342,0.000005136198,0.0002266656,0.9978071,0.000004677124,0.0002088359,9.070616e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973538,0.0007386973,0.001163805,0.00002556018,0.000006904603,0.00001880453,0.00008666464,0.00002540833,0.00058032],"genre_scores_gemma":[0.9958971,0.0004470697,0.002314191,0.00005437075,0.000007490469,0.00002721776,0.0002586937,0.000009899129,0.0009840254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005118162,"threshold_uncertainty_score":0.001712203,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109147515","doi":"10.1128/aac.44.6.1568-1574.2000","title":"Antibiotic Resistance in the ECOR Collection: Integrons and Identification of a Novel <i>aad</i> Gene","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":335,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Integron; Biology; Tetracycline; Gene cassette; Antibiotic resistance; Genetics; Microbiology; Streptomycin; Gene; Vibrio cholerae; Ampicillin; Escherichia coli; Antibiotics; Bacteria","authors":[{"name":"Didier Mazel","is_ca":false},{"name":"Broderick Dychinco","is_ca":true},{"name":"Vera Webb","is_ca":true},{"name":"Julian Davies","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008613234392377597,"gpt":0.2390970056463306,"spread":0.230483771253953,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003357598,0.0006235074,0.0005646217,0.0007734089,0.0004840289,0.0009120344,0.0004578588,0.0005013269,0.001023767],"category_scores_gemma":[0.0008231649,0.0003189243,0.000436124,0.0007338575,0.0003417551,0.0003809822,0.0005517672,0.001006503,0.0006763831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004898898,"about_ca_system_score_gemma":0.0003770683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002010378,"about_ca_topic_score_gemma":0.002408995,"domain_scores_codex":[0.9994099,0.0000595574,0.00008366547,0.0001237373,0.0001899872,0.0001331749],"domain_scores_gemma":[0.9992273,0.00008195654,0.0002325307,0.0001442372,0.0001499005,0.0001641018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003722435,0.000155936,0.01764246,0.00007144569,0.0000286739,0.0006701082,0.0002194728,0.00005298478,0.9732994,0.000114342,0.0002170901,0.007155849],"study_design_scores_gemma":[0.0001109091,0.001311152,0.3852963,0.00009647035,0.0002609371,0.02539961,0.000615767,0.001134647,0.571368,0.0001514842,0.01414955,0.0001051877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952584,0.0005507433,0.001899772,0.0001346636,0.00002768935,0.00006547543,0.00111726,0.00004454658,0.0009015815],"genre_scores_gemma":[0.9836382,0.0006227348,0.008344971,0.0001950326,0.00006230395,0.00005691405,0.004789788,0.00006680217,0.002223384],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002010378,"threshold_uncertainty_score":0.003997386,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164903312","doi":"10.1128/aac.45.10.2733-2739.2001","title":"Phase I/II Trial of the Pharmacokinetics, Safety, and Antiretroviral Activity of Tenofovir Disoproxil Fumarate in Human Immunodeficiency Virus-Infected Adults","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":333,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Gilead Sciences (Canada)","funders":"National Institutes of Health; National Center for Research Resources; National Institute of Mental Health; Johns Hopkins University; University of Washington; Gilead Sciences","keywords":"Pharmacokinetics; Medicine; Placebo; Adverse effect; Dosing; Reverse-transcriptase inhibitor; Pharmacology; Discontinuation; Internal medicine; Virus; Gastroenterology; Sida; Virology; Viral disease; Pathology","authors":[{"name":"Patricia Barditch‐Crovo","is_ca":false},{"name":"Steven G. Deeks","is_ca":false},{"name":"Ann Collier","is_ca":false},{"name":"Sharon Safrin","is_ca":false},{"name":"Dion F. Coakley","is_ca":true},{"name":"Michael D. Miller","is_ca":true},{"name":"Brian P. Kearney","is_ca":true},{"name":"Rebecca Coleman","is_ca":true},{"name":"Patrick D. Lamy","is_ca":true},{"name":"James O. Kahn","is_ca":false},{"name":"Ian McGowan","is_ca":true},{"name":"Paul S. Lietman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01141155838644725,"gpt":0.2844821790997805,"spread":0.2730706207133333,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00113141,0.001789008,0.001756007,0.0003655097,0.0003970662,0.0007044194,0.0006444864,0.001550524,0.003883523],"category_scores_gemma":[0.001502182,0.000579096,0.0008627192,0.0003140305,0.001160288,0.0008129865,0.0002216561,0.002584878,0.0008040188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006363586,"about_ca_system_score_gemma":0.0008421274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007889772,"about_ca_topic_score_gemma":0.001399507,"domain_scores_codex":[0.9996326,0.0001741216,0.00002002856,0.00006235491,0.00003448738,0.00007648398],"domain_scores_gemma":[0.9992208,0.0001632882,0.0001440873,0.00006476351,0.00004314061,0.0003638797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.9155777,0.02656326,0.001679454,0.0003338493,0.0004849309,0.0001234051,0.0001383789,0.0005788392,0.01382623,0.000235019,0.001845082,0.03861391],"study_design_scores_gemma":[0.8258169,0.1685664,0.002396677,0.00001650025,0.000160103,0.00007959461,0.00002170116,0.0004663676,0.001486859,0.0001595208,0.0008176893,0.00001167511],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907199,0.002595204,0.0006750476,0.0006633979,0.0002163991,0.002447769,0.0007728896,0.0001209164,0.001788423],"genre_scores_gemma":[0.9900832,0.001668111,0.001557063,0.000870854,0.0002122975,0.002009381,0.001184142,0.0000241129,0.002390786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003883523,"threshold_uncertainty_score":0.01299167,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163581302","doi":"10.1128/aac.50.1.55-61.2006","title":"Multiple Combination Bactericidal Testing of Staphylococcal Biofilms from Implant-Associated Infections","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":329,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Fusidic acid; Microbiology; Staphylococcus aureus; Biofilm; Antibiotics; Staphylococcus epidermidis; Antimicrobial; Vancomycin; Staphylococcal infections; Antibiotic resistance; Biology; Minimum inhibitory concentration; Bacteria; Medicine","authors":[{"name":"Raphael Saginur","is_ca":true},{"name":"Melissa StDenis","is_ca":true},{"name":"Wendy Ferris","is_ca":true},{"name":"Shawn D. Aaron","is_ca":true},{"name":"Francis Chan","is_ca":true},{"name":"Craig R. Lee","is_ca":true},{"name":"Karam Ramotar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01086158625011469,"gpt":0.226483948219368,"spread":0.2156223619692533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007754759,0.0005708454,0.0008761028,0.0007716909,0.0002398114,0.0003901621,0.000267286,0.0004227103,0.00156646],"category_scores_gemma":[0.001963852,0.0002250914,0.0003587893,0.0004450307,0.0002369109,0.0003784824,0.0003545088,0.0004771774,0.0002831619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001329798,"about_ca_system_score_gemma":0.0002112121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000364004,"about_ca_topic_score_gemma":0.0007822851,"domain_scores_codex":[0.9986166,0.000357088,0.000190804,0.000147582,0.0005999171,0.00008808935],"domain_scores_gemma":[0.999037,0.0003094471,0.0001979644,0.00009171631,0.0002466321,0.0001172248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006287008,0.0002018966,0.01395848,0.00019925,0.00006969152,0.0001575844,0.00008453827,0.0000982598,0.9689137,0.00002464118,0.0000754392,0.0155878],"study_design_scores_gemma":[0.0001107578,0.01365959,0.1195315,0.00006043178,0.0003443143,0.002935258,0.0002490973,0.00195543,0.8588254,0.00009713795,0.002189452,0.00004159746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926409,0.00372834,0.002388016,0.00007121965,0.00004463817,0.00008390709,0.0001849555,0.00004764373,0.0008102911],"genre_scores_gemma":[0.9924423,0.001474752,0.004902456,0.00004099918,0.00002660302,0.00007805249,0.0005018848,0.00001398698,0.0005190183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00156646,"threshold_uncertainty_score":0.005240381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141135082","doi":"10.1128/aac.45.2.433-438.2001","title":"Mutant Prevention Concentrations of Fluoroquinolones for Clinical Isolates of <i>Streptococcus pneumoniae</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":314,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Bayer","keywords":"Gatifloxacin; Moxifloxacin; Streptococcus pneumoniae; Levofloxacin; Trovafloxacin; Microbiology; Sparfloxacin; Mutant; Minimum inhibitory concentration; Medicine; Antibiotics; Pharmacology; Ciprofloxacin; Biology; Ofloxacin","authors":[{"name":"Joseph M. Blondeau","is_ca":true},{"name":"Xilin Zhao","is_ca":false},{"name":"Glen Hansen","is_ca":true},{"name":"Karl Drlica","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04553598527869962,"gpt":0.35835780988177,"spread":0.3128218246030704,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007536501,0.0003175209,0.0004461448,0.0004220297,0.0001493088,0.0006226467,0.0002321156,0.0005862092,0.0006700031],"category_scores_gemma":[0.004069106,0.0002234451,0.0002611087,0.0003065445,0.0002074532,0.0002998015,0.0002080824,0.0005795161,0.0002435784],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004113076,"about_ca_system_score_gemma":0.0003570647,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001300996,"about_ca_topic_score_gemma":0.001205375,"domain_scores_codex":[0.9987977,0.0003321669,0.0001889865,0.0001460068,0.0003910077,0.0001441262],"domain_scores_gemma":[0.9974818,0.0008791142,0.0008770471,0.0001941383,0.0003525401,0.0002153127],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006815754,0.0004254006,0.05596554,0.0004279183,0.0001334694,0.0002598921,0.0002541132,0.003723973,0.875926,0.0005718059,0.0009934052,0.0545028],"study_design_scores_gemma":[0.00007612696,0.007944263,0.07059858,0.00003160987,0.0001230655,0.0009562366,0.00007876672,0.003215132,0.9139594,0.0002161554,0.00276313,0.00003744244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918969,0.002999342,0.002865235,0.0001771008,0.00002804978,0.00004283556,0.0005569704,0.0001520778,0.001281506],"genre_scores_gemma":[0.9967197,0.0002943106,0.002174705,0.00004718058,0.00001148404,0.00001859564,0.0004378012,0.0000125325,0.0002837581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001300996,"threshold_uncertainty_score":0.003985763,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149168973","doi":"10.1128/aac.49.5.1727-1732.2005","title":"Immunomodulatory Activities of Small Host Defense Peptides","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":312,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Inimex Pharmaceuticals (Canada); University of British Columbia","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Cathelicidin; Lipopolysaccharide; Biology; Chemokine; Antimicrobial peptides; Tumor necrosis factor alpha; Innate immune system; Monocyte; Interleukin 8; Proinflammatory cytokine; Chemotaxis; Cell culture; Cytokine; Secretion; Microbiology; In vitro; Cell biology; Peptide; Biochemistry; Immune system; Inflammation; Immunology; Receptor","authors":[{"name":"Dawn M. E. Bowdish","is_ca":true},{"name":"Donald J. Davidson","is_ca":false},{"name":"Monisha G. Scott","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01176822518590607,"gpt":0.2200420647538059,"spread":0.2082738395678998,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001604424,0.0002992715,0.0001970711,0.0001833439,0.00007961727,0.0002482604,0.0001163425,0.000187835,0.00129449],"category_scores_gemma":[0.0001959641,0.0000641495,0.0001392849,0.0001051102,0.0001807771,0.000191845,0.000166469,0.0002919504,0.0001599228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001094089,"about_ca_system_score_gemma":0.0000873501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007090328,"about_ca_topic_score_gemma":0.00006020791,"domain_scores_codex":[0.9999044,0.00002559114,0.000006359036,0.00001741704,0.00002167501,0.00002454583],"domain_scores_gemma":[0.9998772,0.00003551435,0.00002441324,0.00001071177,0.00001557765,0.00003644048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003537652,0.00003628559,0.0002433762,0.00007553218,0.000005603236,0.0000822589,0.000008833736,0.00009394808,0.9923768,0.00005048163,0.00001680388,0.006656347],"study_design_scores_gemma":[0.0001213082,0.006117722,0.01104382,0.00002929143,0.00003936304,0.001126147,0.00004384536,0.0008233155,0.9728782,0.0001759831,0.007588656,0.00001240676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898778,0.007760082,0.0007690522,0.00004360929,0.00002779633,0.00002789645,0.00008873543,0.00001786531,0.001387273],"genre_scores_gemma":[0.996046,0.001779409,0.00127176,0.00006057303,0.00004145521,0.00002728752,0.0001411042,0.000003464765,0.0006289991],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00129449,"threshold_uncertainty_score":0.004330516,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139382674","doi":"10.1128/aac.00242-10","title":"Adaptive Resistance to the “Last Hope” Antibiotics Polymyxin B and Colistin in <i>Pseudomonas aeruginosa</i> Is Mediated by the Novel Two-Component Regulatory System ParR-ParS","year":2010,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":305,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Polymyxin; Colistin; Pseudomonas aeruginosa; Polymyxin B; Microbiology; Biology; Antimicrobial; Lipid A; Antibiotics; Antimicrobial peptides; Antibiotic resistance; Operon; Bacteria; Biochemistry; Gene; Genetics; Escherichia coli","authors":[{"name":"Lucía Fernández","is_ca":true},{"name":"W. James Gooderham","is_ca":true},{"name":"Manjeet Bains","is_ca":true},{"name":"Joseph B. McPhee","is_ca":true},{"name":"Irith Wiegand","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006449319674204221,"gpt":0.2207550613859993,"spread":0.214305741711795,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001768094,0.0004084002,0.000303803,0.0001619014,0.0001553038,0.0003691797,0.0002014168,0.0002939,0.0006324105],"category_scores_gemma":[0.000206863,0.0001406106,0.0002845993,0.0000939727,0.0002575844,0.0002138239,0.0002789036,0.0007598219,0.0003825646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003106668,"about_ca_system_score_gemma":0.0002546609,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006575251,"about_ca_topic_score_gemma":0.0007308822,"domain_scores_codex":[0.9997606,0.00004232081,0.00001537809,0.00005017569,0.00008467662,0.00004697523],"domain_scores_gemma":[0.9998456,0.00004093906,0.00005283392,0.00001981508,0.00001577491,0.00002506969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002523354,0.00001254089,0.0001723964,0.000007440498,0.000001134482,0.00003603418,0.000009494695,0.00001922805,0.9991003,0.00002982442,0.00001377211,0.0005724716],"study_design_scores_gemma":[0.000009247431,0.0002266743,0.00779769,0.000003768899,0.000009463984,0.0006250338,0.00004726526,0.001141615,0.9887946,0.00005315139,0.001281341,0.00001034863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922902,0.0005177398,0.00577679,0.0002543627,0.00002135977,0.00005041011,0.0002590335,0.0001706498,0.0006593075],"genre_scores_gemma":[0.9916585,0.0003532454,0.005595023,0.0001112031,0.00001850647,0.00003956223,0.0005906753,0.00003720393,0.001595974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006575251,"threshold_uncertainty_score":0.002254009,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135964866","doi":"10.1128/aac.00530-10","title":"Cationic Amphiphiles, a New Generation of Antimicrobials Inspired by the Natural Antimicrobial Peptide Scaffold","year":2010,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":297,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Amphiphile; Antimicrobial; Antimicrobial peptides; Bacteria; Cationic polymerization; Antibacterial activity; Combinatorial chemistry; Biology; Antibacterial agent; Peptide; Chemistry; Computational biology; Biochemistry; Microbiology; Antibiotics; Organic chemistry","authors":[{"name":"Brandon Findlay","is_ca":true},{"name":"George G. Zhanel","is_ca":true},{"name":"Frank Schweizer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03026463541778584,"gpt":0.2757909325457954,"spread":0.2455262971280096,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002635944,0.000839986,0.000697559,0.00112403,0.0002193412,0.0006020307,0.0004732907,0.0008046696,0.0008846089],"category_scores_gemma":[0.000206142,0.0002036769,0.0002031651,0.0008861552,0.000477643,0.001114724,0.0004621787,0.001053572,0.001118739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003595078,"about_ca_system_score_gemma":0.0003668911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000251286,"about_ca_topic_score_gemma":0.0003888964,"domain_scores_codex":[0.9999033,0.00001407523,0.000008917455,0.00002103331,0.00004062943,0.00001199991],"domain_scores_gemma":[0.9999396,0.0000178615,0.00001341447,0.000002477528,0.00001449743,0.00001208959],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001043476,0.0001322844,0.0002170207,0.005886339,0.00004723653,0.0006136034,0.00009381303,0.0007592394,0.09621581,0.008960611,0.009905107,0.8770646],"study_design_scores_gemma":[0.00003672866,0.0002841482,0.0006441046,0.0004557578,0.00003547825,0.002781448,0.00005196483,0.0003468486,0.02200126,0.001856393,0.9714738,0.00003205383],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001915919,0.9931456,0.001801536,0.0002169024,0.0002448835,0.0000155128,0.00002009812,0.00003526892,0.00260433],"genre_scores_gemma":[0.009460257,0.9834234,0.002740565,0.0002950977,0.0002089007,0.00004696168,0.00007264389,0.000006717645,0.003745547],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00112403,"threshold_uncertainty_score":0.002959371,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106753350","doi":"10.1128/aac.47.10.3214-3221.2003","title":"Antimicrobial Resistance Genes in Enterotoxigenic <i>Escherichia coli</i> O149:K91 Isolates Obtained over a 23-Year Period from Pigs","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":294,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université Laval; Biotechnology Research Institute; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Integron; Biology; Tetracycline; Microbiology; Cefotaxime; Antibiotic resistance; Antimicrobial; Trimethoprim; Genotype; Ceftiofur; Escherichia coli; Antibiotics; Gene; Genetics","authors":[{"name":"Christine Maynard","is_ca":true},{"name":"John M. Fairbrother","is_ca":true},{"name":"Sadjia Békal","is_ca":true},{"name":"François Sanschagrin","is_ca":true},{"name":"Roger C. Lévesque","is_ca":true},{"name":"Roland Brousseau","is_ca":true},{"name":"Luke Masson","is_ca":true},{"name":"Serge Larivière","is_ca":true},{"name":"Josée Harel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006003805438300575,"gpt":0.2241130108404357,"spread":0.2181092054021351,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002058917,0.0002443842,0.0002200364,0.0006979769,0.0002818843,0.0003816747,0.0001904315,0.0003182082,0.0004843675],"category_scores_gemma":[0.0004678259,0.0001412397,0.0001557241,0.0007621239,0.000275112,0.0001399009,0.0001344176,0.0001854491,0.0002131658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007265945,"about_ca_system_score_gemma":0.0003535532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04565352,"about_ca_topic_score_gemma":0.0699614,"domain_scores_codex":[0.999788,0.00001483229,0.00001649924,0.00006220162,0.00004864618,0.0000699513],"domain_scores_gemma":[0.9994998,0.00006271708,0.0001979693,0.00001869869,0.0001534781,0.00006726655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005491685,0.0001339362,0.6341526,0.0001184537,0.00005057814,0.001447317,0.0006463304,0.0002695167,0.3528074,0.00002072416,0.0002002151,0.009603745],"study_design_scores_gemma":[0.000003974399,0.0001696561,0.9954315,0.00000604257,0.00001086795,0.0006154564,0.0001619893,0.00005669676,0.003218453,0.000001995759,0.0003190579,0.00000424324],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991193,0.00009080821,0.0000675434,0.00001188516,0.00000171825,0.00001255353,0.0004513211,0.000002566017,0.00024235],"genre_scores_gemma":[0.9964144,0.0001614548,0.0003542335,0.00004099045,0.000004998618,0.00001750075,0.00253169,0.000002915107,0.0004717484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04565352,"threshold_uncertainty_score":0.09077555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139663729","doi":"10.1128/aac.45.6.1761-1770.2001","title":"Multidrug Efflux Pumps: Expression Patterns and Contribution to Antibiotic Resistance in <i>Pseudomonas aeruginosa</i> Biofilms","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":292,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Alberta Heritage Foundation for Medical Research","keywords":"Efflux; Biofilm; Pseudomonas aeruginosa; Microbiology; Biology; Multiple drug resistance; Antimicrobial; Antibiotic resistance; Antibiotics; Bacteria; Biochemistry; Genetics","authors":[{"name":"Teresa R. de Kievit","is_ca":false},{"name":"Michael D. Parkins","is_ca":true},{"name":"Richard J. Gillis","is_ca":false},{"name":"Ramakrishnan Srikumar","is_ca":true},{"name":"Howard Ceri","is_ca":true},{"name":"Keith Poole","is_ca":true},{"name":"Barbara H. Iglewski","is_ca":false},{"name":"Douglas G. Storey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006329822858172979,"gpt":0.2398491927063643,"spread":0.2335193698481914,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001507478,0.0001361372,0.0001411476,0.0002933166,0.0001805628,0.0003788847,0.0001054392,0.0003114393,0.0004950825],"category_scores_gemma":[0.0003387867,0.0001341821,0.0001144465,0.000199227,0.000157409,0.0002675333,0.0002113629,0.0003726846,0.0001990857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002217398,"about_ca_system_score_gemma":0.0001964949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001148838,"about_ca_topic_score_gemma":0.001267732,"domain_scores_codex":[0.9998702,0.00001900396,0.000009275492,0.00003155395,0.0000412142,0.00002869969],"domain_scores_gemma":[0.9998597,0.00003155931,0.00004024516,0.000008432828,0.00003560973,0.00002437301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003794703,0.000008490705,0.002358255,0.00001864423,0.000001572736,0.00003773137,0.00004900759,0.000027136,0.9957557,0.00003529073,0.00002598034,0.001644247],"study_design_scores_gemma":[0.00001650372,0.0004142134,0.3551926,0.00005088164,0.00004474025,0.001442133,0.0006428241,0.002412741,0.6345485,0.0002942023,0.004904331,0.00003631873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959409,0.001675887,0.001281074,0.0001169375,0.000004046359,0.00001162453,0.0001994684,0.00002134771,0.000748851],"genre_scores_gemma":[0.9956464,0.001259509,0.00158685,0.0000415822,0.000006544722,0.00002644613,0.0003069082,0.00001134959,0.001114337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001148838,"threshold_uncertainty_score":0.002284288,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109697080","doi":"10.1128/aac.00688-09","title":"Complete Nucleotide Sequences of Plasmids pEK204, pEK499, and pEK516, Encoding CTX-M Enzymes in Three Major <i>Escherichia coli</i> Lineages from the United Kingdom, All Belonging to the International O25:H4-ST131 Clone","year":2009,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":286,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"AstraZeneca","keywords":"Plasmid; Biology; Escherichia coli; Integron; Genetics; Gene; clone (Java method); Microbiology","authors":[{"name":"Neil Woodford","is_ca":false},{"name":"Alessandra Carattoli","is_ca":false},{"name":"E. Karisik","is_ca":false},{"name":"Anthony Underwood","is_ca":false},{"name":"Matthew J. Ellington","is_ca":false},{"name":"David M. Livermore","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01996378335883875,"gpt":0.261102639463363,"spread":0.2411388561045243,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002417379,0.0008186966,0.0006625582,0.001043606,0.0004005645,0.0005515263,0.0005708886,0.0006176441,0.003265845],"category_scores_gemma":[0.001044073,0.0005178205,0.0006719339,0.001851611,0.0004268126,0.0003735377,0.0003531695,0.0009818152,0.003939628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007846368,"about_ca_system_score_gemma":0.0007023076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004747686,"about_ca_topic_score_gemma":0.006811811,"domain_scores_codex":[0.9995961,0.00006294279,0.0000817786,0.0000915428,0.00009887486,0.00006887585],"domain_scores_gemma":[0.9992058,0.0002138113,0.0002068083,0.0001030177,0.0001655712,0.0001051068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001235631,0.0002010228,0.004370829,0.0006936443,0.0000297488,0.00051426,0.000570085,0.0005100649,0.97447,0.0007146334,0.001316463,0.01537365],"study_design_scores_gemma":[0.0009131305,0.002869656,0.3109679,0.0005438203,0.0005595529,0.003891118,0.001075232,0.00245555,0.4901778,0.0009312705,0.1853753,0.0002396458],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8309277,0.00288613,0.02223541,0.0004449393,0.0001880434,0.001363293,0.1329029,0.0003317054,0.008719805],"genre_scores_gemma":[0.5027501,0.001711838,0.04004584,0.0002606829,0.00004764751,0.00091704,0.4445215,0.0002292465,0.009516139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004747686,"threshold_uncertainty_score":0.01092541,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101217433","doi":"10.1128/aac.03163-14","title":"A Broad-Spectrum Antibiofilm Peptide Enhances Antibiotic Action against Bacterial Biofilms","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":285,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Microbiology; Biofilm; Acinetobacter baumannii; Pseudomonas aeruginosa; Ciprofloxacin; Tobramycin; Klebsiella pneumoniae; Antibiotics; Enterococcus faecium; Imipenem; Staphylococcus aureus; Salmonella enterica; Ceftazidime; Biology; Chemistry; Antibiotic resistance; Bacteria; Escherichia coli; Salmonella; Gentamicin; Biochemistry","authors":[{"name":"Fany Reffuveille","is_ca":true},{"name":"César de la Fuente‐Núñez","is_ca":true},{"name":"Sarah Mansour","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0121180738964305,"gpt":0.2354893941523673,"spread":0.2233713202559368,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001480714,0.0004201336,0.0002292893,0.0001279297,0.00008051752,0.0002043147,0.0001395273,0.0002955077,0.0007816122],"category_scores_gemma":[0.0001522042,0.0001344868,0.0001908097,0.00007292203,0.0001374842,0.0001894784,0.000263276,0.0004118928,0.0002379997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008320791,"about_ca_system_score_gemma":0.00009051417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006250291,"about_ca_topic_score_gemma":0.00009995271,"domain_scores_codex":[0.9998639,0.00003574268,0.00001020525,0.00002501767,0.00004157706,0.00002352595],"domain_scores_gemma":[0.9999118,0.00002501307,0.00001855528,0.000006348891,0.00001153978,0.00002669422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004250413,0.00002415725,0.0000444447,0.00002548618,0.000001901474,0.00002241567,0.000002478952,0.00003998926,0.9984183,0.000008597275,0.00001132006,0.001358459],"study_design_scores_gemma":[0.00002831959,0.002077677,0.004305421,0.00001288666,0.00001881263,0.0006561138,0.00001398792,0.0008157257,0.9897585,0.00002368658,0.002282644,0.000006304027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929692,0.003309521,0.002165732,0.00007924525,0.00003101815,0.00003458903,0.00006364584,0.00003474067,0.001312269],"genre_scores_gemma":[0.9926659,0.001721534,0.004302629,0.00008057933,0.00002258191,0.00003208432,0.0001372666,0.000009886,0.001027412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007816122,"threshold_uncertainty_score":0.002614796,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2133740160","doi":"10.1128/aac.03954-14","title":"The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":279,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Resistome; Pseudomonas aeruginosa; Amikacin; Biology; Microbiology; Antibiotic resistance; Meropenem; Multiple drug resistance; Whole genome sequencing; Integron; Genetics; Antibiotics; Genome; Bacteria; Gene","authors":[{"name":"Veronica N. Kos","is_ca":false},{"name":"Maxime Déraspe","is_ca":true},{"name":"Robert E. McLaughlin","is_ca":false},{"name":"James Whiteaker","is_ca":false},{"name":"Paul H. Roy","is_ca":true},{"name":"Richard A. Alm","is_ca":false},{"name":"Jacques Corbeil","is_ca":true},{"name":"Humphrey Gardner","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009600759810308926,"gpt":0.2521932180265166,"spread":0.2425924582162076,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001829649,0.0001829485,0.0002424856,0.0009775027,0.0001944691,0.0005955654,0.0001339765,0.0004044612,0.001868293],"category_scores_gemma":[0.001362238,0.000121176,0.0001064818,0.0004933263,0.0002607032,0.00032268,0.0004215512,0.0004039497,0.0004071017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001592095,"about_ca_system_score_gemma":0.00009329652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006507192,"about_ca_topic_score_gemma":0.0004256431,"domain_scores_codex":[0.9997831,0.00003576454,0.0000130939,0.00005343822,0.00005763625,0.00005695451],"domain_scores_gemma":[0.9993477,0.0001698609,0.0002407471,0.00003434055,0.0001051067,0.0001022193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009088294,0.0001345036,0.3571434,0.00006998042,0.00006626965,0.0006884851,0.0007367193,0.0003405281,0.6224331,0.0003910747,0.0002921446,0.01679501],"study_design_scores_gemma":[0.000007045212,0.0002221834,0.9873047,0.00001028181,0.0000178579,0.001662162,0.0004545297,0.0008266931,0.007950124,0.0004996324,0.001029244,0.00001544073],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989347,0.0002250743,0.0001395357,0.00008184312,0.000001781396,0.000003366819,0.0001154474,0.000005450193,0.0004928634],"genre_scores_gemma":[0.9991254,0.0001441256,0.0001158469,0.00004064064,0.00000900992,0.000007149833,0.0001793635,0.00000437558,0.0003739778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001868293,"threshold_uncertainty_score":0.006250083,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149529467","doi":"10.1128/aac.01664-10","title":"Effect of Antibiotic Treatment on the Intestinal Metabolome","year":2011,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":275,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Foreign Affairs and International Trade Canada; University of British Columbia; Crohn's and Colitis Foundation of Canada; Genome British Columbia; Crohn's and Colitis Foundation; Canadian Institutes of Health Research; Genome Canada; Howard Hughes Medical Institute","keywords":"Metabolome; Biology; Metabolomics; Gut flora; Host (biology); Antibiotics; Homeostasis; Computational biology; Bioinformatics; Microbiology; Cell biology; Genetics; Immunology","authors":[{"name":"L. Caetano M. Antunes","is_ca":true},{"name":"Jun Han","is_ca":true},{"name":"Rosana B. R. Ferreira","is_ca":true},{"name":"Petra Lolić","is_ca":true},{"name":"Christoph H. Borchers","is_ca":true},{"name":"B. Brett Finlay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01832513649009476,"gpt":0.2636554613654566,"spread":0.2453303248753618,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001854231,0.0002826502,0.0006578862,0.0002437496,0.0001568942,0.0003811126,0.0001115068,0.000424159,0.001781927],"category_scores_gemma":[0.0004863681,0.0001227253,0.0002221182,0.0002572406,0.0002212292,0.0001866453,0.0001770597,0.0004934036,0.0002446019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001797575,"about_ca_system_score_gemma":0.000227717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000675071,"about_ca_topic_score_gemma":0.001019083,"domain_scores_codex":[0.9997283,0.00009127088,0.00002174929,0.00004827523,0.00004427391,0.00006624892],"domain_scores_gemma":[0.9996427,0.0001387391,0.00006331781,0.00003540471,0.00004323986,0.0000765681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.008765844,0.000309616,0.001981105,0.00009843918,0.00006087968,0.00009166506,0.00002712412,0.0001241752,0.9778956,0.00003020084,0.0002325126,0.01038286],"study_design_scores_gemma":[0.000176929,0.006775814,0.06487823,0.00002102542,0.0001446844,0.0003456393,0.0001251361,0.001627579,0.9209937,0.00009569305,0.004788863,0.00002651371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937602,0.003084551,0.0004364917,0.0003666215,0.000125948,0.0000347301,0.0008096663,0.00004773946,0.001334194],"genre_scores_gemma":[0.9959412,0.001147321,0.0007875796,0.0002178599,0.00002816063,0.00002476567,0.0007157009,0.00001961674,0.001117927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001781927,"threshold_uncertainty_score":0.00596118,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125825231","doi":"10.1128/aac.00256-11","title":"The <i>pmrCAB</i> Operon Mediates Polymyxin Resistance in <i>Acinetobacter baumannii</i> ATCC 17978 and Clinical Isolates through Phosphoethanolamine Modification of Lipid A","year":2011,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":273,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Universidad de Sevilla","keywords":"Acinetobacter baumannii; Polymyxin; Microbiology; Operon; Lipid A; Acinetobacter; Polymyxin B; Biology; Bacteria; Drug resistance; Antibiotics; Pseudomonas aeruginosa; Gene; Genetics; Escherichia coli","authors":[{"name":"Luis Alberto Rodríguez Arroyo","is_ca":true},{"name":"Carmen M. Herrera","is_ca":false},{"name":"Lucía Fernández","is_ca":true},{"name":"Jessica V. Hankins","is_ca":false},{"name":"M. Stephen Trent","is_ca":false},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02191931336177355,"gpt":0.2754867470809508,"spread":0.2535674337191773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001266639,0.0004524299,0.0002678677,0.0002138725,0.0001340859,0.0003167783,0.0002525671,0.0002110074,0.000636133],"category_scores_gemma":[0.0002469158,0.0001480177,0.0002979181,0.0002113712,0.0001786509,0.0001473799,0.0002525501,0.0004138754,0.0003710286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003677233,"about_ca_system_score_gemma":0.0003208361,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002306829,"about_ca_topic_score_gemma":0.00142537,"domain_scores_codex":[0.9997248,0.00004029434,0.00003007305,0.00005628135,0.00009085536,0.00005774342],"domain_scores_gemma":[0.9998292,0.00001726238,0.0000745182,0.00002054961,0.00002482432,0.00003372758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004122223,0.00001917379,0.0008682284,0.00001370199,0.000003310065,0.00003654446,0.00001198348,0.00004132512,0.9985009,0.00002512905,0.00002564606,0.0004128215],"study_design_scores_gemma":[0.00001627022,0.0002049038,0.02836962,0.000009865403,0.00003070019,0.0007905679,0.0001011796,0.001309652,0.9676183,0.00004577902,0.001492703,0.00001050139],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976109,0.000206132,0.001143079,0.00009716624,0.00000968848,0.00002217261,0.00041287,0.00005286223,0.0004451353],"genre_scores_gemma":[0.9950166,0.0001838586,0.002736351,0.0000485269,0.000008422272,0.00003922281,0.00124406,0.00002791834,0.000695105],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002306829,"threshold_uncertainty_score":0.004586756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970698892","doi":"10.1128/aac.01538-07","title":"Antimicrobial-Resistant Pathogens in Intensive Care Units in Canada: Results of the Canadian National Intensive Care Unit (CAN-ICU) Study, 2005-2006","year":2008,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":271,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Microbiology; Linezolid; Tigecycline; Enterococcus faecium; Clindamycin; Enterococcus; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Medicine; Streptococcus pneumoniae; Vancomycin; Biology; Antimicrobial; Antibiotics; Bacteria","authors":[{"name":"George G. Zhanel","is_ca":true},{"name":"Mel DeCorby","is_ca":true},{"name":"Nancy M. Laing","is_ca":true},{"name":"Barb Weshnoweski","is_ca":true},{"name":"Ravi Vashisht","is_ca":true},{"name":"Franil Tailor","is_ca":true},{"name":"Kim Nichol","is_ca":true},{"name":"Aleksandra Wierzbowski","is_ca":true},{"name":"Patricia J. Baudry","is_ca":true},{"name":"James A. Karlowsky","is_ca":true},{"name":"Philippe Lagacé‐Wiens","is_ca":true},{"name":"Andrew Walkty","is_ca":true},{"name":"Melissa McCracken","is_ca":false},{"name":"Michael R. Mulvey","is_ca":false},{"name":"Jack Johnson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02756523067184191,"gpt":0.2572934818786312,"spread":0.2297282512067892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006962479,0.0005504935,0.0005306193,0.001633688,0.002506585,0.001467276,0.001037679,0.000534882,0.001359607],"category_scores_gemma":[0.002260876,0.0004492647,0.0006104533,0.004763514,0.000542331,0.0004624001,0.0008220945,0.000767106,0.000218428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.03515054,"about_ca_system_score_gemma":0.02975075,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9936284,"about_ca_topic_score_gemma":0.9970318,"domain_scores_codex":[0.9983602,0.00006658025,0.0001109504,0.0002087057,0.000865099,0.0003884981],"domain_scores_gemma":[0.9967486,0.00006508805,0.000625709,0.00005112495,0.001834752,0.0006747972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001173814,0.00004392824,0.9924206,0.00007906691,0.00006354471,0.0001043617,0.0003256614,0.0001226543,0.0002039033,0.00004485342,0.001883164,0.004590781],"study_design_scores_gemma":[0.000009901833,0.00002656943,0.9978378,0.00004397976,0.00002984639,0.00008150578,0.0004014818,0.0001782475,0.00007825137,0.000006929002,0.001297295,0.000008221537],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9708124,0.003487988,0.0002553657,0.0006113124,0.00005279594,0.0001916441,0.01900227,0.00003679187,0.005549394],"genre_scores_gemma":[0.9899161,0.001454592,0.0005520305,0.0003884214,0.00002499584,0.00003949573,0.006064604,0.00001059687,0.001549106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03515054,"threshold_uncertainty_score":0.2550362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126990727","doi":"10.1128/aac.00297-09","title":"Epidemic Clonal Groups of <i>Escherichia coli</i> as a Cause of Antimicrobial-Resistant Urinary Tract Infections in Canada, 2002 to 2004","year":2009,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":270,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"Office of Research and Development; Pfizer; Procter and Gamble; U.S. Department of Veterans Affairs","keywords":"Escherichia coli; Biology; Microbiology; Virulence; Genotype; Antibiotic resistance; Cephalosporin; Antimicrobial; Trimethoprim; Drug resistance; Sulfamethoxazole; Antibiotics; Genetics; Gene","authors":[{"name":"James R. Johnson","is_ca":false},{"name":"Megan Menard","is_ca":false},{"name":"Brian Johnston","is_ca":false},{"name":"Michael A. Kuskowski","is_ca":false},{"name":"Kim Nichol","is_ca":true},{"name":"George G. Zhanel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0102595334808525,"gpt":0.2631250339669323,"spread":0.2528655004860798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005879651,0.0003169429,0.0003035589,0.001503623,0.002052597,0.001409078,0.001004759,0.0004143789,0.0008372387],"category_scores_gemma":[0.002163921,0.0002618079,0.0002689948,0.002721745,0.0006490722,0.0003217201,0.0007126126,0.0006781071,0.00007858314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02112148,"about_ca_system_score_gemma":0.02660706,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9895561,"about_ca_topic_score_gemma":0.9932962,"domain_scores_codex":[0.9991813,0.00004529083,0.00004089852,0.0001278252,0.0003550204,0.0002495542],"domain_scores_gemma":[0.9977078,0.00007204169,0.0003602583,0.00006712566,0.001346713,0.0004460482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001573328,0.00003279765,0.9768795,0.00004112045,0.00004468655,0.0003617753,0.001156653,0.0002594012,0.001228016,0.0001665022,0.00148343,0.01818888],"study_design_scores_gemma":[0.000005493961,0.00002170601,0.9965815,0.00001630024,0.0000209402,0.0002079525,0.0008432509,0.0003521846,0.0002249039,0.00002311893,0.00169323,0.000009356592],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947234,0.001045757,0.0002393487,0.000352964,0.00001239651,0.00005436513,0.001646072,0.00002387518,0.001901777],"genre_scores_gemma":[0.9968628,0.0007049345,0.0003573981,0.0001715216,0.00001131813,0.000008626299,0.001087513,0.000006060175,0.0007899271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02112148,"threshold_uncertainty_score":0.1532478,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2158299121","doi":"10.1128/aac.45.5.1558-1560.2001","title":"Synergistic Interactions between Mammalian Antimicrobial Defense Peptides","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":261,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Antimicrobial peptides; Antimicrobial; Lysozyme; Peptide; Computational biology; Cationic polymerization; Biology; Chemistry; Biochemistry; Microbiology","authors":[{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0195557521389166,"gpt":0.2565656699018202,"spread":0.2370099177629036,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004220689,0.0004001044,0.0003720268,0.0002048189,0.0001378939,0.0003228847,0.0001769956,0.0003644697,0.001320551],"category_scores_gemma":[0.0003127512,0.0001493651,0.0003517637,0.0001680275,0.0002488626,0.0003036744,0.0007032479,0.0005045533,0.0003611512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001340312,"about_ca_system_score_gemma":0.00009347391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002685673,"about_ca_topic_score_gemma":0.00009530925,"domain_scores_codex":[0.9994872,0.0001985762,0.00002333674,0.00007181041,0.0001309603,0.00008811865],"domain_scores_gemma":[0.9996762,0.0001421019,0.0000567251,0.00003713604,0.00002805893,0.00005986224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001280079,0.00001541886,0.000286289,0.00005015435,0.00001065935,0.00006850202,0.00001109573,0.00006723988,0.9973453,0.00008659739,0.00002410111,0.001906613],"study_design_scores_gemma":[0.00001984688,0.001156522,0.00342717,0.00001476691,0.00004402412,0.001036001,0.00004604805,0.0005569325,0.9897318,0.0001458244,0.003815073,0.000005934302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880649,0.006118349,0.002868894,0.00009338176,0.00002943343,0.00002809519,0.00005785573,0.00002257224,0.002716493],"genre_scores_gemma":[0.9924163,0.001448108,0.004733182,0.0001082534,0.00002749791,0.00003486729,0.0001221503,0.000008441386,0.001101201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001320551,"threshold_uncertainty_score":0.004417658,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2133063356","doi":"10.1128/aac.44.4.827-834.2000","title":"Multiparameter Flow Cytometric Analysis of Antibiotic Effects on Membrane Potential, Membrane Permeability, and Bacterial Counts of <i>Staphylococcus aureus</i> and <i>Micrococcus luteus</i>","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":258,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Tetracycline; Micrococcus luteus; Staphylococcus aureus; Membrane permeability; Microbiology; Chloramphenicol; Bacteria; Biology; Antibacterial agent; Flow cytometry; Population; Amoxicillin; Antibiotics; Chemistry; Molecular biology; Biochemistry; Membrane; Medicine","authors":[{"name":"David Novo","is_ca":true},{"name":"Nancy G. Perlmutter","is_ca":false},{"name":"Richard H. Hunt","is_ca":true},{"name":"Howard M. Shapiro","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004893783448527022,"gpt":0.2171806976599891,"spread":0.212286914211462,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005083578,0.0005596891,0.0005807475,0.0005186569,0.0002181994,0.0004437742,0.000335494,0.0005442353,0.000906555],"category_scores_gemma":[0.0005286991,0.0001292411,0.0002495516,0.0005314635,0.0002989398,0.0004622216,0.0002476559,0.0008095881,0.0003450512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005168582,"about_ca_system_score_gemma":0.0001565719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002999782,"about_ca_topic_score_gemma":0.000337998,"domain_scores_codex":[0.9994313,0.0001057373,0.00005525402,0.0001760809,0.0001659925,0.00006556429],"domain_scores_gemma":[0.9992936,0.0002212707,0.0001900548,0.00005142872,0.0001825458,0.00006126153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006017677,0.00002141082,0.0001843099,0.00002237795,0.00000315541,0.000007194153,0.00001743531,0.00005130465,0.9985966,0.0000394243,0.00002691816,0.0009695843],"study_design_scores_gemma":[0.000008664343,0.0002620644,0.004123637,0.000005516139,0.00001410655,0.000111442,0.00002717286,0.003253026,0.9913908,0.0001071035,0.000683167,0.00001342175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9269768,0.001891128,0.06640591,0.0002182239,0.00007883882,0.0002374848,0.001462179,0.0005344908,0.002195054],"genre_scores_gemma":[0.8998356,0.001437919,0.09245484,0.0002760417,0.00008014071,0.0007172941,0.001864847,0.0001417668,0.003191448],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000906555,"threshold_uncertainty_score":0.003750086,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163423447","doi":"10.1128/aac.44.12.3395-3401.2000","title":"Two New Mechanisms of Macrolide Resistance in Clinical Strains of <i>Streptococcus pneumoniae</i> from Eastern Europe and North America","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":255,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Pfizer","keywords":"23S ribosomal RNA; Biology; Lincosamides; Microbiology; Ketolide; Ribosomal RNA; Streptococcus pneumoniae; Telithromycin; Genetics; Gene; Erythromycin; Antibiotics; Ribosome","authors":[{"name":"Amelia Tait‐Kamradt","is_ca":false},{"name":"Todd A. Davies","is_ca":false},{"name":"Peter C. Appelbaum","is_ca":false},{"name":"Florence Depardieu","is_ca":false},{"name":"Patrice Courvalin","is_ca":false},{"name":"J.W. Petitpas","is_ca":false},{"name":"L Wondrack","is_ca":false},{"name":"ANDRE WALKER","is_ca":false},{"name":"Michael R. Jacobs","is_ca":false},{"name":"Joyce A. Sutcliffe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01878964406926076,"gpt":0.2863808391584133,"spread":0.2675911950891525,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003827523,0.0003549442,0.0002853149,0.001084237,0.00032398,0.0008234352,0.0004483908,0.0005027532,0.0006436706],"category_scores_gemma":[0.000767939,0.000323463,0.0003134703,0.000410763,0.0006788106,0.0003323349,0.000469178,0.0002916293,0.0001345861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005296057,"about_ca_system_score_gemma":0.0002755546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002667208,"about_ca_topic_score_gemma":0.003101205,"domain_scores_codex":[0.9995705,0.00005885772,0.00006515118,0.0001003062,0.00009997496,0.0001051731],"domain_scores_gemma":[0.9991195,0.0001034853,0.0004683562,0.0000709996,0.0001485706,0.00008925913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006758475,0.000182718,0.7952347,0.0001256213,0.00009148905,0.002717292,0.001263869,0.0002513295,0.1767209,0.0005532892,0.000252679,0.02193027],"study_design_scores_gemma":[0.00005230835,0.0004060752,0.9760418,0.00003493424,0.00005975904,0.009914958,0.0005596779,0.0005722876,0.01052045,0.0001854948,0.001627385,0.00002487526],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983901,0.0007833575,0.000248502,0.00004608319,0.000002538405,0.00001437711,0.00003079361,0.000009031436,0.0004752239],"genre_scores_gemma":[0.9983188,0.0004060637,0.0007581727,0.00008332574,0.00001298919,0.00001806523,0.0001687864,0.000004095933,0.0002298037],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002667208,"threshold_uncertainty_score":0.005303323,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141917952","doi":"10.1128/aac.00878-13","title":"Evaluation of the Carba NP Test for Rapid Detection of Carbapenemase-Producing Enterobacteriaceae and Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":248,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Science Centre for Human and Animal Health; Public Health Ontario; Toronto Public Health","funders":"Association of Medical Microbiology and Infectious Disease Canada","keywords":"Enterobacteriaceae; Pseudomonas aeruginosa; Microbiology; Predictive value; Biology; Pseudomonadaceae; Enterobacteriaceae Infections; Pseudomonas; Bacterial protein; Bacteria; Escherichia coli; Medicine; Gene; Biochemistry; Genetics; Internal medicine","authors":[{"name":"Nathalie Tijet","is_ca":true},{"name":"David A. Boyd","is_ca":true},{"name":"Samir N. Patel","is_ca":true},{"name":"Michael R. Mulvey","is_ca":true},{"name":"Roberto G. Melano","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01241660464239857,"gpt":0.2427723539329479,"spread":0.2303557492905493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003028139,0.0009635161,0.0007188411,0.002274315,0.0002869203,0.0005407499,0.0009683375,0.001210214,0.0009983521],"category_scores_gemma":[0.005809598,0.0004637895,0.0004532062,0.0008634227,0.0008061063,0.0006145826,0.0005207589,0.0005915632,0.0005131963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002515796,"about_ca_system_score_gemma":0.000454356,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001628879,"about_ca_topic_score_gemma":0.001868756,"domain_scores_codex":[0.9934713,0.002575152,0.0003141369,0.0008922254,0.002499393,0.0002479636],"domain_scores_gemma":[0.994965,0.002742099,0.0004239586,0.0002591871,0.001255758,0.00035404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002736793,0.001168593,0.1040028,0.0004428485,0.0002020396,0.001161767,0.0002367233,0.0007987755,0.8448362,0.000148578,0.0003900384,0.04387492],"study_design_scores_gemma":[0.0004772313,0.0213231,0.2918441,0.0001720149,0.0005337572,0.02234741,0.0004233746,0.02142735,0.6343532,0.0003146569,0.006613967,0.0001699473],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733616,0.004298349,0.01688944,0.0003001151,0.0001135553,0.0003524364,0.0004948415,0.0001920196,0.003997565],"genre_scores_gemma":[0.9804989,0.0009334469,0.01664807,0.0001447455,0.00004636564,0.0001272937,0.0006198722,0.00001838729,0.0009628903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003028139,"threshold_uncertainty_score":0.01601452,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121969999","doi":"10.1128/aac.01115-12","title":"Cryptococcus neoformans-Cryptococcus gattii Species Complex: an International Study of Wild-Type Susceptibility Endpoint Distributions and Epidemiological Cutoff Values for Fluconazole, Itraconazole, Posaconazole, and Voriconazole","year":2012,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":247,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Institut National de Santé Publique du Québec; University of Alberta","funders":"","keywords":"Cryptococcus gattii; Cryptococcus neoformans; Itraconazole; Posaconazole; Voriconazole; Fluconazole; Cryptococcosis; Cryptococcus; Microbiology; Biology; Population; Veterinary medicine; Antifungal; Medicine","authors":[{"name":"Ana Espinel‐Ingroff","is_ca":false},{"name":"Ana Isabel Aller","is_ca":false},{"name":"Rafael Cantón","is_ca":false},{"name":"Laura Rosío Castañón-Olivares","is_ca":false},{"name":"Anuradha Chowdhary","is_ca":false},{"name":"Susana Córdoba","is_ca":false},{"name":"Manuel Cuenca‐Estrella","is_ca":false},{"name":"Annette W. Fothergill","is_ca":false},{"name":"Jeffrey Fuller","is_ca":true},{"name":"Nelesh P. Govender","is_ca":false},{"name":"Ferry Hagen","is_ca":false},{"name":"María Teresa Illnait Zaragozí","is_ca":false},{"name":"Elizabeth M. Johnson","is_ca":false},{"name":"Sarah Kidd","is_ca":false},{"name":"Cornelia Lass‐Flörl","is_ca":false},{"name":"Shawn R. Lockhart","is_ca":false},{"name":"M. A. Martins","is_ca":false},{"name":"Jacques F. Meis","is_ca":false},{"name":"Márcia de Souza Carvalho Melhem","is_ca":false},{"name":"Luis Ostrosky‐Zeichner","is_ca":false},{"name":"Teresa Peláez","is_ca":false},{"name":"Michael A. Pfaller","is_ca":false},{"name":"Wiley A. Schell","is_ca":false},{"name":"G. St‐Germain","is_ca":true},{"name":"Luciana Trilles","is_ca":false},{"name":"John Turnidge","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06192596582894144,"gpt":0.3469717096070367,"spread":0.2850457437780952,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002373204,0.0009258911,0.0004726708,0.00116971,0.0003544369,0.0005171963,0.0003765321,0.000532278,0.001101317],"category_scores_gemma":[0.002022955,0.0003313901,0.0004025069,0.001093621,0.0007029759,0.0006463613,0.0005767505,0.0006669902,0.0003162961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006472984,"about_ca_system_score_gemma":0.0004110828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004805064,"about_ca_topic_score_gemma":0.002946195,"domain_scores_codex":[0.998767,0.0004863065,0.0001208685,0.0003650041,0.000138536,0.000122212],"domain_scores_gemma":[0.9973929,0.0005280063,0.0007329921,0.0004081085,0.0003954094,0.0005424773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005332003,0.003747548,0.9224029,0.0001896402,0.0003819412,0.0006856556,0.0014139,0.0006292457,0.03505409,0.000536868,0.0008017158,0.02882449],"study_design_scores_gemma":[0.0001469131,0.0034574,0.986998,0.0000253138,0.0001354801,0.002238101,0.0005998994,0.0009739354,0.003580923,0.00005850691,0.001763943,0.00002154789],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979548,0.0001840592,0.000507161,0.00002896049,0.000004779946,0.00005838865,0.0003196301,0.00000587759,0.000936231],"genre_scores_gemma":[0.9980268,0.000140102,0.0008159573,0.00006232015,0.000008109253,0.00003014002,0.0006640075,0.000007489341,0.0002451171],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004805064,"threshold_uncertainty_score":0.01255083,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160454557","doi":"10.1128/aac.01159-06","title":"Antiparasitic Drug Nitazoxanide Inhibits the Pyruvate Oxidoreductases of <i>Helicobacter pylori</i> , Selected Anaerobic Bacteria and Parasites, and <i>Campylobacter jejuni</i>","year":2006,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":242,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Health Canada","keywords":"Thiamine pyrophosphate; Anaerobic bacteria; Campylobacter jejuni; Cofactor; Nitazoxanide; Entamoeba histolytica; Biochemistry; Biology; Microbiology; Pyruvate decarboxylation; Chemistry; Pyruvate dehydrogenase complex; Bacteria; Enzyme","authors":[{"name":"Paul S. Hoffman","is_ca":true},{"name":"Gary Sisson","is_ca":false},{"name":"Matthew A. Croxen","is_ca":false},{"name":"Kevin D. Welch","is_ca":false},{"name":"W. Dean Harman","is_ca":false},{"name":"Nunilo Cremades","is_ca":false},{"name":"Michael G. Morash","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007081957431604919,"gpt":0.2256319066722463,"spread":0.2185499492406414,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004998502,0.0002682451,0.0001856588,0.00008158691,0.00006984972,0.0001204773,0.0001584846,0.0001623503,0.0006853235],"category_scores_gemma":[0.00006331511,0.00008294766,0.00009753192,0.00008452281,0.0001164345,0.00009914186,0.00008144015,0.0002517406,0.0001918302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002655825,"about_ca_system_score_gemma":0.0000979504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006514833,"about_ca_topic_score_gemma":0.001620314,"domain_scores_codex":[0.9999475,0.000009141492,0.000003689008,0.000009082063,0.00001390576,0.00001655102],"domain_scores_gemma":[0.9999633,0.000005536175,0.00001393108,0.000002003812,0.000005186689,0.000009996593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001898649,0.00001556612,0.0002606759,0.00004010455,0.000006601238,0.00003316301,0.000005725025,0.00002551024,0.9961858,0.00002767722,0.00006281126,0.003146391],"study_design_scores_gemma":[0.00004675614,0.001160354,0.01091174,0.000006371209,0.0000425229,0.0007309543,0.00002445581,0.0007328438,0.9795955,0.00003215964,0.006711694,0.000004679493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848474,0.01024247,0.001769209,0.0001926441,0.00004707689,0.00002084533,0.0002081383,0.0001086364,0.002563599],"genre_scores_gemma":[0.9932341,0.003769461,0.001019457,0.00005923782,0.00001468811,0.000009066714,0.0004157831,0.00001234297,0.00146578],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006853235,"threshold_uncertainty_score":0.002292693,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127080406","doi":"10.1128/aac.49.5.1745-1752.2005","title":"<i>Candida albicans</i> Zinc Cluster Protein Upc2p Confers Resistance to Antifungal Drugs and Is an Activator of Ergosterol Biosynthetic Genes","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":242,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Clinical Research Institute; McGill University; Royal Victoria Hospital","funders":"Pfizer Canada","keywords":"Ergosterol; Biology; Ketoconazole; Candida albicans; Azole; Microbiology; Antifungal drug; Gene; Corpus albicans; Fluconazole; Biochemistry","authors":[{"name":"Sarah MacPherson","is_ca":true},{"name":"Bassel Akache","is_ca":false},{"name":"Sandra Weber","is_ca":true},{"name":"Xavier De Deken","is_ca":true},{"name":"Martine Raymond","is_ca":true},{"name":"Bernard Turcotte","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01163096900063498,"gpt":0.263765547723296,"spread":0.252134578722661,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006807656,0.0005027576,0.0002228167,0.0004040826,0.0002384332,0.0003330152,0.0003228869,0.0002075233,0.00258251],"category_scores_gemma":[0.0001133371,0.0001078546,0.0002564031,0.0003397209,0.0002036488,0.0001027849,0.0004141151,0.0004691603,0.0007486077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005442361,"about_ca_system_score_gemma":0.0002538159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002761404,"about_ca_topic_score_gemma":0.002085674,"domain_scores_codex":[0.9998444,0.0000116633,0.000009616521,0.00003262197,0.00006449203,0.00003716915],"domain_scores_gemma":[0.9999223,0.000007860362,0.00001807739,0.000008988723,0.00001429569,0.00002843124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009216438,0.00002351415,0.0004001332,0.00002789467,0.000004762105,0.0001116381,0.000006588774,0.00005574582,0.9971775,0.0000948442,0.0002806576,0.001724635],"study_design_scores_gemma":[0.00001587189,0.00007561201,0.01842809,0.00001302012,0.00002328931,0.0009823168,0.00003899499,0.001525556,0.9693484,0.00009839157,0.009438225,0.00001225013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801111,0.00223025,0.007256433,0.000386816,0.00008678532,0.00003512271,0.004451318,0.0006650715,0.004777052],"genre_scores_gemma":[0.9834158,0.0007076926,0.003378676,0.0001294832,0.00001875536,0.0000395313,0.005887889,0.0001053091,0.006316843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002761404,"threshold_uncertainty_score":0.008639395,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2107494940","doi":"10.1128/aac.48.10.4012-4015.2004","title":"Prevalence of Mutations within the Quinolone Resistance-Determining Region of <i>gyrA</i> , <i>gyrB</i> , <i>parC</i> , and <i>parE</i> and Association with Antibiotic Resistance in Quinolone-Resistant <i>Salmonella enterica</i>","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":242,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Quinolone; DNA gyrase; Ciprofloxacin; Mutation; Biology; Genetics; Salmonella enterica; Virology; Microbiology; Salmonella; Antibiotics; Gene; Escherichia coli; Bacteria","authors":[{"name":"Deborah J. Eaves","is_ca":true},{"name":"Luke Randall","is_ca":false},{"name":"Douglas Gray","is_ca":true},{"name":"Anthony M. Buckley","is_ca":true},{"name":"Martin J. Woodward","is_ca":false},{"name":"Allan P. White","is_ca":false},{"name":"Laura J. V. Piddock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007682010317924821,"gpt":0.2228781143278855,"spread":0.2151961040099607,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002563564,0.0001332687,0.0001698122,0.0006343938,0.0001458695,0.0002408607,0.0001389575,0.0004128873,0.001320576],"category_scores_gemma":[0.0009158904,0.000201312,0.0001283694,0.0003380629,0.0002821823,0.0002061408,0.0001296242,0.0002044215,0.0002823976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001492501,"about_ca_system_score_gemma":0.00008728748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001674469,"about_ca_topic_score_gemma":0.002968073,"domain_scores_codex":[0.9997482,0.00005517159,0.00002663025,0.00008305111,0.00003641132,0.00005056561],"domain_scores_gemma":[0.9989791,0.0002072421,0.000519584,0.00005352567,0.00009963453,0.0001409203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002649299,0.00004605539,0.9867907,0.00001185524,0.00003000067,0.0001984173,0.0001021054,0.00002838668,0.01089058,0.000010711,0.00007244778,0.001553839],"study_design_scores_gemma":[0.000004542561,0.0001812092,0.9981912,0.00000223164,0.0000106653,0.0008569174,0.00009058753,0.00004561482,0.0005301347,0.000006180793,0.00007815994,0.000002596333],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997367,0.00004346293,0.0000185009,0.00000791296,5.42376e-7,9.618177e-7,0.00007021613,0.00000109396,0.0001206611],"genre_scores_gemma":[0.9996717,0.00003616878,0.00004986737,0.000006939479,0.000002045389,0.00000168941,0.0001188432,8.256163e-7,0.0001118817],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001674469,"threshold_uncertainty_score":0.004417777,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131310300","doi":"10.1128/aac.48.7.2415-2423.2004","title":"Efflux Pump-Mediated Intrinsic Drug Resistance in <i>Mycobacterium smegmatis</i>","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":241,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Universidad de Zaragoza; University of Toronto","keywords":"Acriflavine; Ethidium bromide; Mycobacterium smegmatis; Efflux; TetR; Biology; Mutant; Gene; Microbiology; Antibacterial agent; Molecular biology; Mycobacterium tuberculosis; Repressor; Genetics; Gene expression; Antibiotics; DNA; Tuberculosis","authors":[{"name":"Xian-Zhi Li","is_ca":false},{"name":"Li Zhang","is_ca":false},{"name":"Hiroshi Nikaido","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01148528597798478,"gpt":0.273075468045651,"spread":0.2615901820676663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001593021,0.0002475586,0.0003020937,0.0001504964,0.0001023159,0.0002832502,0.0001590732,0.0002286828,0.0007406817],"category_scores_gemma":[0.0002258139,0.0001266888,0.0003409559,0.0001312824,0.0001647591,0.0001852823,0.0001685892,0.0004273368,0.0004026675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004570262,"about_ca_system_score_gemma":0.0001853254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001247872,"about_ca_topic_score_gemma":0.001239156,"domain_scores_codex":[0.9998041,0.00003383349,0.00002705745,0.00003850998,0.00006135867,0.000035108],"domain_scores_gemma":[0.9998821,0.00002133689,0.00003957607,0.0000200473,0.00002443949,0.00001246903],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002672506,0.000007753634,0.0004082412,0.00002980313,0.000002685763,0.00003640624,0.000009001606,0.00003287292,0.9987109,0.00003523737,0.00002239687,0.0006780247],"study_design_scores_gemma":[0.000009273427,0.0001818575,0.008441295,0.000008336321,0.00001696124,0.0005593166,0.00002371165,0.0007801272,0.98783,0.00003852845,0.002104303,0.000006316237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923954,0.0011181,0.004596875,0.0001476224,0.00002665921,0.00002788101,0.0008387085,0.0001288496,0.0007200197],"genre_scores_gemma":[0.9916229,0.0004938129,0.00422139,0.00006635267,0.00001153325,0.00002641467,0.001667383,0.00004541226,0.001844794],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001247872,"threshold_uncertainty_score":0.003316045,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167239617","doi":"10.1128/aac.01650-15","title":"Extracellular DNA Acidifies Biofilms and Induces Aminoglycoside Resistance in Pseudomonas aeruginosa","year":2015,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Athabasca University; University of Calgary","funders":"","keywords":"Biofilm; Pseudomonas aeruginosa; Microbiology; Biology; Aminoglycoside; Bacteria; Extracellular; DNA; Extracellular polymeric substance; Pseudomonadaceae; Biochemistry; Antibiotics; Genetics","authors":[{"name":"Mike Wilton","is_ca":true},{"name":"Laetitia Charron‐Mazenod","is_ca":true},{"name":"Richard A. Moore","is_ca":true},{"name":"Shawn Lewenza","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01703929659609766,"gpt":0.2369929977377103,"spread":0.2199537011416127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001288539,0.0002763433,0.0002148826,0.0002089168,0.0001293969,0.0002307867,0.0001351377,0.0003031219,0.000818208],"category_scores_gemma":[0.0003309273,0.0001551739,0.0001429797,0.0001270732,0.0001737841,0.000167492,0.0003484436,0.0004123633,0.0002233237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002355374,"about_ca_system_score_gemma":0.0001690972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009495337,"about_ca_topic_score_gemma":0.001459253,"domain_scores_codex":[0.999774,0.00005241136,0.00001655257,0.00002682574,0.00008635374,0.00004373107],"domain_scores_gemma":[0.999846,0.00004419457,0.00003436931,0.00001568126,0.00002508984,0.0000346786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001579656,0.000009034748,0.00006695623,0.000008915288,9.731182e-7,0.00002913431,0.000009650238,0.00001406985,0.999526,0.000009894966,0.000005681962,0.0003038558],"study_design_scores_gemma":[0.00001456177,0.0005550392,0.01055825,0.000009540067,0.00001002005,0.0002711412,0.00009396092,0.0007736462,0.9865012,0.0000818214,0.00112313,0.000007781017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978122,0.00053603,0.0006605769,0.00008440914,0.00001353168,0.00001611985,0.00006039317,0.00002392867,0.0007927936],"genre_scores_gemma":[0.9965324,0.0004104461,0.001275623,0.00005841245,0.0000104309,0.00002375977,0.0001716767,0.00001000634,0.001507201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009495337,"threshold_uncertainty_score":0.002737224,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114146849","doi":"10.1128/aac.49.11.4536-4545.2005","title":"Pharmacokinetics, Safety, and Tolerability of Caspofungin in Children and Adolescents","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Georgetown Hospital","funders":"Merck","keywords":"Caspofungin; Regimen; Pharmacokinetics; Tolerability; Dosing; Medicine; Neutropenia; Adverse effect; Area under the curve; Body surface area; Internal medicine; Toxicity; Pharmacology; Gastroenterology; Antifungal; Voriconazole","authors":[{"name":"Thomas J. Walsh","is_ca":false},{"name":"Peter C. Adamson","is_ca":false},{"name":"Nita L. Seibel","is_ca":false},{"name":"Patricia M. Flynn","is_ca":false},{"name":"Michael Neely","is_ca":false},{"name":"Cindy L. Schwartz","is_ca":false},{"name":"Aziza Shad","is_ca":true},{"name":"Sheldon L. Kaplan","is_ca":false},{"name":"Maureen Roden","is_ca":false},{"name":"Julie A. Stone","is_ca":false},{"name":"Alisha Miller","is_ca":false},{"name":"Susan K. Bradshaw","is_ca":false},{"name":"Susan X. Li","is_ca":false},{"name":"Carole A. Sable","is_ca":false},{"name":"Nicholas A. Kartsonis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006843523792836222,"gpt":0.2608551712062994,"spread":0.2540116474134632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002496661,0.0001493802,0.0002985121,0.0001115758,0.0001284011,0.0003211765,0.00007610741,0.0001782077,0.0004585143],"category_scores_gemma":[0.0009493098,0.0001138989,0.000203285,0.0001500483,0.0002027889,0.0001772187,0.0001021426,0.0004604819,0.0001327967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003742572,"about_ca_system_score_gemma":0.0003304642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001422646,"about_ca_topic_score_gemma":0.001240435,"domain_scores_codex":[0.99986,0.00003559565,0.00001170228,0.00002145994,0.00004084808,0.00003031244],"domain_scores_gemma":[0.9994741,0.0001224931,0.0002015726,0.00001573202,0.00006454978,0.000121495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"nonrandomized_trial","study_design_scores_codex":[0.005683284,0.0003448105,0.9255363,0.00009554441,0.00009327507,0.00100916,0.0005105092,0.0008169413,0.02075348,0.0001758764,0.001001896,0.04397885],"study_design_scores_gemma":[0.0001880057,0.007304135,0.9817309,0.0000326642,0.0001026398,0.002081791,0.0003708203,0.0005709516,0.004912422,0.00007238745,0.002622374,0.00001080793],"study_design_candidate":"nonrandomized_trial","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988641,0.0006762948,0.00007098722,0.00003380851,0.000002871874,0.000005650681,0.00007900525,0.000003125195,0.0002641996],"genre_scores_gemma":[0.9989637,0.0005012839,0.0001332873,0.00005932135,0.000007687972,0.00001449313,0.000175265,0.000002700514,0.0001421342],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001422646,"threshold_uncertainty_score":0.002828717,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2345358595","doi":"10.1128/aac.00209-16","title":"Systematic Review of Factors Associated with Antibiotic Prescribing for Respiratory Tract Infections","year":2016,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Use and Resistance","field":"Immunology and Microbiology","cited_by":235,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Medicine; Antibiotics; Respiratory tract infections; Medical prescription; Odds ratio; Intensive care medicine; MEDLINE; Bronchitis; Antimicrobial stewardship; Pharyngitis; Antibiotic resistance; Internal medicine; Respiratory system","authors":[{"name":"Rachel McKay","is_ca":true},{"name":"Allison Mah","is_ca":true},{"name":"Michael R. Law","is_ca":true},{"name":"Kimberlyn McGrail","is_ca":true},{"name":"David M. Patrick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03785555060714753,"gpt":0.2954599307727326,"spread":0.2576043801655851,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00742335,0.001612258,0.009361672,0.01343916,0.000643371,0.002394437,0.001963975,0.001466015,0.005544014],"category_scores_gemma":[0.03988239,0.001105886,0.006575861,0.01979459,0.0007905049,0.001915111,0.001330378,0.0009569132,0.0005113342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003492256,"about_ca_system_score_gemma":0.01246296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01312095,"about_ca_topic_score_gemma":0.03736596,"domain_scores_codex":[0.9904844,0.002701011,0.004624179,0.0005527528,0.001448625,0.0001891085],"domain_scores_gemma":[0.9604933,0.02666372,0.00888468,0.0004032066,0.003150773,0.0004043383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00009666088,0.000009668738,0.0009604436,0.9776571,0.007235473,0.0001053207,0.0001140098,0.00004815173,0.00008015976,0.00006220158,0.001080487,0.01255038],"study_design_scores_gemma":[0.0001994316,0.0002403868,0.01170134,0.8812913,0.08779399,0.0005563032,0.0003138532,0.00009299354,0.0001710563,0.0001643659,0.01742852,0.00004654595],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001976562,0.995445,0.0001445092,0.0002032387,0.000101724,0.0003795667,0.001407105,0.00001263213,0.000329683],"genre_scores_gemma":[0.01506014,0.9821914,0.000799307,0.0003431141,0.00008004043,0.0006143322,0.0007470795,0.000009507343,0.0001549931],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01343916,"threshold_uncertainty_score":0.03925896,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2770431582","doi":"10.1128/aac.01968-17","title":"<i>In Vitro</i> Activity of the Siderophore Cephalosporin, Cefiderocol, against Carbapenem-Nonsusceptible and Multidrug-Resistant Isolates of Gram-Negative Bacilli Collected Worldwide in 2014 to 2016","year":2017,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":234,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Stenotrophomonas maltophilia; Microbiology; Acinetobacter baumannii; Cephalosporin; Pseudomonas aeruginosa; Biology; Siderophore; Carbapenem; Broth microdilution; Multiple drug resistance; Bacilli; Enterobacteriaceae; Antimicrobial; Minimum inhibitory concentration; Antibiotics; Bacteria; Escherichia coli","authors":[{"name":"Meredith Hackel","is_ca":false},{"name":"Masakatsu Tsuji","is_ca":false},{"name":"Yoshinori Yamano","is_ca":false},{"name":"Roger Echols","is_ca":false},{"name":"James A. Karlowsky","is_ca":true},{"name":"Daniel F. Sahm","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006885970573342143,"gpt":0.2429337964842426,"spread":0.2360478259109005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007831417,0.0005614707,0.0004095027,0.0006921276,0.0001786041,0.0005339442,0.0003012372,0.0002947084,0.001092099],"category_scores_gemma":[0.0009771688,0.0001743579,0.0006782741,0.0009674167,0.0002545648,0.0002797729,0.0002830483,0.0003194304,0.0003679015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004018316,"about_ca_system_score_gemma":0.0004514827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004693173,"about_ca_topic_score_gemma":0.00567694,"domain_scores_codex":[0.9988148,0.0002687316,0.0002796944,0.0002533694,0.0002704304,0.0001130554],"domain_scores_gemma":[0.9989887,0.0001441303,0.0002952302,0.00009209496,0.0004161964,0.00006367677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001509493,0.0004723106,0.1011482,0.0004222936,0.0002258536,0.0001883115,0.0001254795,0.0009284862,0.8846166,0.00007624358,0.0007716487,0.009514991],"study_design_scores_gemma":[0.00005970514,0.008230031,0.2487386,0.00007076947,0.0001947164,0.0008612103,0.0002014649,0.000941967,0.73624,0.00003144794,0.004401518,0.00002847171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991655,0.001003685,0.0005219594,0.00005832558,0.00002718531,0.0000934517,0.004949905,0.00001843414,0.00167201],"genre_scores_gemma":[0.9776014,0.0009302657,0.002832317,0.00009844234,0.00003534982,0.00007396202,0.01686148,0.00001154171,0.001555244],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004693173,"threshold_uncertainty_score":0.009331703,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050134681","doi":"10.1128/aac.45.2.563-570.2001","title":"Antibiotic Activity and Characterization of BB-3497, a Novel Peptide Deformylase Inhibitor","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":233,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"NAEJA-RGM Pharmaceuticals (Canada)","funders":"","keywords":"Antibacterial agent; Enterococcus faecalis; Microbiology; Biology; Hydroxylamine; Antibiotics; Escherichia coli; Biochemistry","authors":[{"name":"John M. Clements","is_ca":false},{"name":"R. Paul Beckett","is_ca":false},{"name":"Anthony Brown","is_ca":false},{"name":"Graham Catlin","is_ca":false},{"name":"Mario Lobell","is_ca":false},{"name":"Shilpa Palan","is_ca":false},{"name":"Wayne Thomas","is_ca":false},{"name":"Mark Whittaker","is_ca":false},{"name":"Stephen Wood","is_ca":false},{"name":"Sameeh M. Salama","is_ca":true},{"name":"Patrick J. Baker","is_ca":false},{"name":"H. Fiona Rodgers","is_ca":false},{"name":"V.V. Barynin","is_ca":false},{"name":"David W. Rice","is_ca":false},{"name":"Michael Hunter","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01361048068782115,"gpt":0.2510736900806514,"spread":0.2374632093928303,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001087137,0.000275666,0.0004699713,0.0002608936,0.0001036744,0.0002653998,0.0002833993,0.0002477577,0.0006631858],"category_scores_gemma":[0.0002300217,0.000128973,0.0002050395,0.0002583567,0.0001152309,0.0001058852,0.0001037634,0.0003576686,0.0003902532],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002503485,"about_ca_system_score_gemma":0.0002006911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008695695,"about_ca_topic_score_gemma":0.0007437883,"domain_scores_codex":[0.9998572,0.0000200268,0.00001605532,0.00002040221,0.00006333068,0.00002298064],"domain_scores_gemma":[0.9999038,0.00002145631,0.00001767003,0.000009897752,0.00002091643,0.00002637179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001647526,0.00008124863,0.0003100312,0.00003233309,0.000007434603,0.00007437904,0.000008640837,0.0003694883,0.9948643,0.00003459877,0.00005604271,0.003996689],"study_design_scores_gemma":[0.00008860375,0.0009868888,0.005801142,0.000007328279,0.00003155103,0.00077405,0.00001303183,0.002497907,0.9857786,0.00002444572,0.003987948,0.000008650128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900424,0.002921951,0.003574107,0.000108778,0.00001502443,0.0001027712,0.000927065,0.00006088919,0.002247031],"genre_scores_gemma":[0.98918,0.001695851,0.003541756,0.00006440313,0.0000129684,0.00005815388,0.003432052,0.0000244258,0.001990526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008695695,"threshold_uncertainty_score":0.002218604,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}