{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1368,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":1368,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"0eeb850af1f5","filters":{"venue":"Applied and Environmental Microbiology"}},"results":[{"id":"W2108718991","doi":"10.1128/aem.01541-09","title":"Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21757,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of British Columbia","funders":"Alfred P. Sloan Foundation; National Science Foundation","keywords":"Laptop; Software; Pyrosequencing; Computer science; Metagenomics; Data mining; Computational biology; Biology; Software engineering; Genetics; Gene; Programming language; Operating system","authors":[{"name":"Patrick D. Schloss","is_ca":false},{"name":"Sarah L. Westcott","is_ca":false},{"name":"Thomas Ryabin","is_ca":false},{"name":"Justine R. Hall","is_ca":false},{"name":"Martin Hartmann","is_ca":true},{"name":"Emily B. Hollister","is_ca":false},{"name":"Ryan A. Lesniewski","is_ca":false},{"name":"Brian B. Oakley","is_ca":false},{"name":"Donovan H. Parks","is_ca":true},{"name":"Courtney J. Robinson","is_ca":false},{"name":"Jason W. Sahl","is_ca":false},{"name":"Blaž Stres","is_ca":false},{"name":"Gerhard Thallinger","is_ca":false},{"name":"David J. Horn","is_ca":false},{"name":"Carolyn F. Weber","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02640740679992318,"gpt":0.2161884023350541,"spread":0.1897809955351309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003680745,0.002120772,0.001294109,0.003254986,0.0008929503,0.0025255,0.003198717,0.00111928,0.004319092],"category_scores_gemma":[0.004998285,0.001079638,0.002291945,0.002014172,0.0005245908,0.002099693,0.003725023,0.002984513,0.003801187],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005575808,"about_ca_system_score_gemma":0.001147629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001625872,"about_ca_topic_score_gemma":0.002112289,"domain_scores_codex":[0.9986464,0.0002662122,0.000125714,0.0003286614,0.0005275402,0.0001054305],"domain_scores_gemma":[0.9987367,0.0003642701,0.0002029574,0.0002502681,0.0002734001,0.0001724612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009448345,0.0003929288,0.01367558,0.003591501,0.001674342,0.001118072,0.001740932,0.0107274,0.3130131,0.01198472,0.06292078,0.5782159],"study_design_scores_gemma":[0.0004008847,0.0009824877,0.02143275,0.0008928699,0.0006306983,0.006082271,0.0005328998,0.1408115,0.1569052,0.02753489,0.6426715,0.001121994],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01929592,0.001539617,0.8979265,0.000251919,0.0003539871,0.0004627825,0.005363323,0.07163616,0.003169745],"genre_scores_gemma":[0.02052444,0.0007677022,0.9611644,0.0002912835,0.00009715032,0.0005947467,0.009300779,0.00489715,0.002362453],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.004319092,"threshold_uncertainty_score":0.01946592,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971059297","doi":"10.1128/aem.68.8.3795-3801.2002","title":"Role of <i>Pseudomonas putida</i> Indoleacetic Acid in Development of the Host Plant Root System","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1794,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pseudomonas putida; Bacteria; Biology; Mutant; Auxin; Seedling; Rhizosphere; Botany; Microbiology; Biochemistry; Gene","authors":[{"name":"Cheryl L. Patten","is_ca":true},{"name":"Bernard R. Glick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006123003647498024,"gpt":0.1427698146142067,"spread":0.1366468109667087,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001016877,0.0003421998,0.0002492216,0.000202336,0.0001548849,0.0003204192,0.0001822788,0.0003214185,0.0005604265],"category_scores_gemma":[0.0001368999,0.0001378574,0.0001406167,0.00008526841,0.0001802637,0.0002066198,0.0001874155,0.0003667283,0.000408117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003314982,"about_ca_system_score_gemma":0.0002563884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00106435,"about_ca_topic_score_gemma":0.001218129,"domain_scores_codex":[0.9998806,0.00002370815,0.000006760172,0.00002594473,0.00002805201,0.0000350043],"domain_scores_gemma":[0.999779,0.0000474935,0.00005187017,0.00002109713,0.00002928826,0.00007123243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002693982,0.000006236982,0.0002069652,0.000008228829,7.473554e-7,0.00002300517,0.000003913888,0.00001359773,0.9993154,0.00001804417,0.000004371328,0.0003726685],"study_design_scores_gemma":[0.000008583045,0.0002149422,0.01980016,0.000004436853,0.000008524491,0.000293363,0.00006021459,0.0009239113,0.9779464,0.00005626369,0.0006766169,0.000006518506],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951645,0.001296987,0.001675374,0.0001067444,0.000007526828,0.00000949514,0.0001451794,0.0001109495,0.001483227],"genre_scores_gemma":[0.9978515,0.0002716479,0.0009252194,0.00001543464,0.000002677715,0.000006424264,0.0001348509,0.00001093533,0.0007812433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00106435,"threshold_uncertainty_score":0.002405167,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982035274","doi":"10.1128/aem.70.9.5373-5382.2004","title":"Biofuel Cells Select for Microbial Consortia That Self-Mediate Electron Transfer","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":1263,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Microbial fuel cell; Microbial population biology; Redox; Alcaligenes; Bacteria; Chemistry; Microbial consortium; Microbiology; Pseudomonas; Biology; Food science; Anode; Environmental chemistry; Microorganism; Electrode; Inorganic chemistry","authors":[{"name":"Korneel Rabaey","is_ca":false},{"name":"Nico Boon","is_ca":false},{"name":"Steven D. Siciliano","is_ca":true},{"name":"Marc Verhaege","is_ca":false},{"name":"Willy Verstraete","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003723184265503053,"gpt":0.1614016111093939,"spread":0.1576784268438908,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004273177,0.001147338,0.0007676054,0.0005704019,0.0003227406,0.0009742472,0.0005549745,0.0008927381,0.001184965],"category_scores_gemma":[0.0006766081,0.0002736035,0.0004735096,0.0008352546,0.0003055504,0.0007716825,0.0008721481,0.0006339367,0.001545372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001938204,"about_ca_system_score_gemma":0.0002280979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002246065,"about_ca_topic_score_gemma":0.0005752504,"domain_scores_codex":[0.9993874,0.00008802502,0.0000439244,0.000120981,0.0002606104,0.00009904606],"domain_scores_gemma":[0.9997144,0.00004991566,0.00006685597,0.00002783025,0.00006960121,0.00007134136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004676042,0.0001294281,0.002002599,0.0000919065,0.00001601867,0.00009349227,0.00002546219,0.00006436423,0.9880915,0.0002123488,0.0001926403,0.009033544],"study_design_scores_gemma":[0.00006965201,0.0006962245,0.01353801,0.00003740072,0.00005598964,0.001116293,0.0001627355,0.001734554,0.9704148,0.0007329476,0.01142037,0.0000209818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9579638,0.00669391,0.02649831,0.0006056803,0.0002299769,0.000424425,0.001350863,0.0008509265,0.005382205],"genre_scores_gemma":[0.9399949,0.00384428,0.04590398,0.0004272072,0.00009604634,0.0003211507,0.002763537,0.0001209439,0.006528056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001184965,"threshold_uncertainty_score":0.003964126,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131485875","doi":"10.1128/aem.71.9.5544-5550.2005","title":"Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":950,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"National Science Foundation","keywords":"Biology; Ascomycota; Basidiomycota; Species richness; Internal transcribed spacer; Dominance (genetics); Fungal Diversity; Soil microbiology; Relative species abundance; Phylum; Botany; Ecology; Pyrosequencing; Microbial population biology; Community structure; Ribosomal RNA; Abundance (ecology); Soil water; Gene; Genetics; Bacteria","authors":[{"name":"Heath O’Brien","is_ca":false},{"name":"Jeri Lynn Parrent","is_ca":false},{"name":"Jason A. Jackson","is_ca":false},{"name":"Jean‐Marc Moncalvo","is_ca":true},{"name":"Rytas Vilgalys","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00647921278751743,"gpt":0.1662573514073977,"spread":0.1597781386198803,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004401946,0.0004857317,0.0004601615,0.001434024,0.0005430671,0.0005776247,0.0002579454,0.0004092515,0.0006352025],"category_scores_gemma":[0.000899452,0.0001569954,0.00043729,0.001823282,0.0001779206,0.0002734556,0.0004164403,0.0004001725,0.0005328867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001403047,"about_ca_system_score_gemma":0.0003170454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001285645,"about_ca_topic_score_gemma":0.002283782,"domain_scores_codex":[0.9993316,0.00009520676,0.0000536276,0.0002289299,0.0002228491,0.00006774091],"domain_scores_gemma":[0.9993452,0.0001429151,0.0001628002,0.0000533288,0.0002221129,0.00007364732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003203717,0.0001569224,0.02901622,0.0001850004,0.00007104454,0.0001758218,0.0003110764,0.0007143645,0.9390053,0.00009271505,0.0001745,0.02977675],"study_design_scores_gemma":[0.00006823076,0.001145321,0.7515262,0.00009664631,0.0002598898,0.001203759,0.0007705073,0.0174349,0.210014,0.0006952704,0.01671752,0.00006777232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9487084,0.000766709,0.03539544,0.00003789442,0.00001985625,0.0003720974,0.0128406,0.0002555105,0.001603291],"genre_scores_gemma":[0.834271,0.0009406375,0.1331592,0.0001557504,0.00004536981,0.0007788791,0.0287935,0.0001185584,0.001737146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001434024,"threshold_uncertainty_score":0.002556384,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168104108","doi":"10.1128/aem.02772-10","title":"Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":788,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pyrosequencing; Biology; Metagenomics; Genetics; Illumina dye sequencing; 16S ribosomal RNA; Computational biology; Ribosomal RNA; DNA sequencing; Gene; Genome; Sequence assembly; Deep sequencing; Sequence analysis; Transcriptome; Gene expression","authors":[{"name":"Andrea K. Bartram","is_ca":true},{"name":"Michael D. J. Lynch","is_ca":true},{"name":"Jennifer C. Stearns","is_ca":true},{"name":"Gabriel Moreno‐Hagelsieb","is_ca":true},{"name":"Josh D. Neufeld","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07193464806363736,"gpt":0.2100395760047354,"spread":0.138104927941098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002114745,0.001414618,0.001282724,0.002009932,0.0006979423,0.00185162,0.001128008,0.0007119305,0.002524482],"category_scores_gemma":[0.002719795,0.0008839386,0.001253442,0.001627489,0.0004450532,0.0009952754,0.001428638,0.001585333,0.002395891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003248233,"about_ca_system_score_gemma":0.0007783363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004678674,"about_ca_topic_score_gemma":0.001635439,"domain_scores_codex":[0.9986714,0.0002996066,0.0001450892,0.0003262286,0.0004247898,0.0001329178],"domain_scores_gemma":[0.9988134,0.0003273533,0.0001682383,0.0002056023,0.0003211556,0.000164268],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003092235,0.0001834491,0.0009523242,0.0004129746,0.00008902843,0.00009918445,0.0001286719,0.001707554,0.9613362,0.0006479269,0.0005906682,0.03354276],"study_design_scores_gemma":[0.0001289195,0.0008135416,0.004776236,0.00004959792,0.000123956,0.0002726944,0.00008422557,0.01813281,0.9592335,0.001985849,0.01430341,0.0000953953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1774201,0.0009407123,0.8008525,0.0002156794,0.000225368,0.002357467,0.01090923,0.003637096,0.003441869],"genre_scores_gemma":[0.1106634,0.001123409,0.8573341,0.0003739847,0.0001036227,0.002012169,0.02342548,0.0007046324,0.004259113],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002524482,"threshold_uncertainty_score":0.01118398,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2493607481","doi":"10.1128/aem.01235-16","title":"The Microbiota of Breast Tissue and Its Association with Breast Cancer","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":622,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Breast cancer; Biology; Microbiome; Population; Cancer; Bacteria; Microbiology; Staphylococcus epidermidis; Genetics; Immunology; Cancer research; Staphylococcus aureus; Medicine; Environmental health","authors":[{"name":"Camilla Urbaniak","is_ca":true},{"name":"Gregory B. Gloor","is_ca":true},{"name":"Muriel Brackstone","is_ca":false},{"name":"Leslie Scott","is_ca":false},{"name":"Mark Tangney","is_ca":false},{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.001839165056310245,"gpt":0.1787838484676286,"spread":0.1769446834113184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003062635,0.0002112316,0.0001752245,0.0005829236,0.0003094191,0.0006650457,0.0002445726,0.0004977913,0.003850561],"category_scores_gemma":[0.001452818,0.00009667965,0.0001142273,0.0009078861,0.0002531513,0.0002386115,0.0004605071,0.0003296878,0.0004923095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002532703,"about_ca_system_score_gemma":0.0002077038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002072126,"about_ca_topic_score_gemma":0.001973694,"domain_scores_codex":[0.9996823,0.00009345418,0.00002546435,0.00005394233,0.0000824128,0.0000623758],"domain_scores_gemma":[0.9993162,0.0001046965,0.0003285496,0.00002394135,0.0001180347,0.0001085437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004177494,0.00007514947,0.9731106,0.0002836398,0.00005486817,0.0001188719,0.00008979944,0.00003442336,0.002385647,0.00004506864,0.001196177,0.02218802],"study_design_scores_gemma":[0.000005576633,0.0001237346,0.9959878,0.0001017708,0.00003849356,0.0007095396,0.0002940297,0.0001164778,0.0003167694,0.00006607209,0.00223556,0.000004131393],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.965506,0.02821174,0.0003494179,0.001642603,0.0001925176,0.00002084732,0.001611538,0.00002496925,0.002440311],"genre_scores_gemma":[0.9942355,0.004248793,0.0003552184,0.0001995196,0.0001220778,0.00001334138,0.0003806698,0.000004189924,0.0004408187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003850561,"threshold_uncertainty_score":0.0128814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135780060","doi":"10.1128/aem.01177-06","title":"Use of 16S rRNA and <i>rpoB</i> Genes as Molecular Markers for Microbial Ecology Studies","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":604,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"rpoB; Biology; Phylogenetic tree; 16S ribosomal RNA; Ribosomal RNA; Subspecies; Genetics; Gene; Phylogenetics; Evolutionary biology; Ecology","authors":[{"name":"Rebecca J. Case","is_ca":false},{"name":"Ingela Dahllöf","is_ca":false},{"name":"Carola Holmström","is_ca":false},{"name":"W. Ford Doolittle","is_ca":true},{"name":"Staffan Kjelleberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006330270348480791,"gpt":0.1874651092974997,"spread":0.1811348389490189,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002998474,0.0008392204,0.0007746075,0.001832288,0.0003111395,0.001413364,0.0005579554,0.0005729186,0.0004332572],"category_scores_gemma":[0.003209105,0.0003042058,0.0004075184,0.002376754,0.0006992482,0.001643715,0.00083383,0.0005799411,0.0003449213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002707243,"about_ca_system_score_gemma":0.0004113602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004744706,"about_ca_topic_score_gemma":0.0005631743,"domain_scores_codex":[0.9975048,0.001024559,0.0002240608,0.0005591923,0.0005266453,0.0001608629],"domain_scores_gemma":[0.9979571,0.000720487,0.0006939076,0.000207462,0.0002973496,0.0001237649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003357696,0.0001507575,0.02967895,0.0009588409,0.0001123662,0.0001457426,0.000305018,0.001164474,0.9001318,0.0009483382,0.0001185559,0.06594941],"study_design_scores_gemma":[0.00002940891,0.00329037,0.1336776,0.0006157177,0.0004229078,0.001622061,0.001414704,0.008034608,0.8223957,0.005071413,0.02326403,0.0001614431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8611233,0.0504203,0.08156254,0.0004604878,0.0002650876,0.0002159006,0.001437989,0.0002525403,0.004261861],"genre_scores_gemma":[0.8193296,0.01968781,0.1580374,0.0001928573,0.0001183777,0.0001767764,0.001396172,0.00007562866,0.0009853698],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002998474,"threshold_uncertainty_score":0.01585764,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115338073","doi":"10.1128/aem.71.5.2303-2309.2005","title":"Contribution of <i>Archaea</i> to Total Prokaryotic Production in the Deep Atlantic Ocean","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":568,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Crenarchaeota; Euryarchaeota; Mesopelagic zone; Archaea; Bathyal zone; Thaumarchaeota; Biology; Water column; Oceanography; Ecology; Pelagic zone; Bacteria; Geology; Paleontology","authors":[{"name":"Gerhard J. Herndl","is_ca":false},{"name":"Thomas Reinthaler","is_ca":false},{"name":"Eva Teira","is_ca":false},{"name":"Hendrik van Aken","is_ca":false},{"name":"Cornelius Veth","is_ca":false},{"name":"Annelie Pernthaler","is_ca":false},{"name":"Jakob Pernthaler","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003381290299401925,"gpt":0.1753273848869095,"spread":0.1719460945875076,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009177851,0.0002425324,0.0001917559,0.0004241471,0.000266374,0.0004263401,0.0001498998,0.0001765934,0.0003819067],"category_scores_gemma":[0.0001907124,0.0002419256,0.0001867377,0.0003524369,0.0001652817,0.0001572349,0.0003946661,0.000208648,0.0001317709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003498835,"about_ca_system_score_gemma":0.0003438131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01831662,"about_ca_topic_score_gemma":0.02295188,"domain_scores_codex":[0.999936,0.000003917913,0.000006310182,0.0000192629,0.00001631107,0.00001820598],"domain_scores_gemma":[0.9998415,0.00001881002,0.00003165685,0.00000845764,0.00005374853,0.00004577724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002902181,0.00001565904,0.2908314,0.00009300743,0.00005068168,0.00009616125,0.0002267562,0.0002835013,0.6989139,0.00004739299,0.00002821164,0.009123133],"study_design_scores_gemma":[0.000005917924,0.000143778,0.980841,0.00001364358,0.0000537644,0.0001287352,0.0003380783,0.00127884,0.01660338,0.00004756684,0.0005380043,0.000007398011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993877,0.000158416,0.0001267994,0.000007981368,0.000001581418,0.000001169438,0.0001076689,0.000002512184,0.0002061577],"genre_scores_gemma":[0.9983768,0.0002825182,0.0005463599,0.00001348188,0.000004162927,0.000005808434,0.0003233186,0.000003817061,0.0004436864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01831662,"threshold_uncertainty_score":0.03642005,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016488959","doi":"10.1128/aem.00242-14","title":"Microbiota of Human Breast Tissue","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":561,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Ottawa Regional Cancer Foundation; Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research; University College Cork; London Health Sciences Centre","keywords":"Biology; Gammaproteobacteria; Citrobacter; Propionibacterium; Microbiology; Population; Klebsiella; Staphylococcus; Prevotella; Bacteria; Enterobacteriaceae; Staphylococcus aureus; 16S ribosomal RNA; Escherichia coli; Medicine; Genetics","authors":[{"name":"Camilla Urbaniak","is_ca":true},{"name":"Joanne Cummins","is_ca":false},{"name":"Muriel Brackstone","is_ca":true},{"name":"Jean M. Macklaim","is_ca":true},{"name":"Gregory B. Gloor","is_ca":true},{"name":"Chwanrow Baban","is_ca":false},{"name":"Leslie Scott","is_ca":true},{"name":"Deidre M. O'Hanlon","is_ca":false},{"name":"Jeremy P. Burton","is_ca":true},{"name":"Kevin P. Francis","is_ca":false},{"name":"Mark Tangney","is_ca":false},{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002481868169393923,"gpt":0.191679813001963,"spread":0.1891979448325691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001812039,0.0001980435,0.0002443546,0.0006666073,0.0004405114,0.0007368122,0.0001321507,0.0001909967,0.002824647],"category_scores_gemma":[0.000547934,0.0001199318,0.0001344339,0.0006306045,0.0001928355,0.0001165167,0.0004468867,0.0001684745,0.001472605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003582134,"about_ca_system_score_gemma":0.0007904472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01436773,"about_ca_topic_score_gemma":0.0132764,"domain_scores_codex":[0.9996562,0.00004975772,0.00001951585,0.00005705545,0.0001461858,0.00007127607],"domain_scores_gemma":[0.9998237,0.00001704636,0.00002293466,0.00001399196,0.00009351885,0.00002877512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007931212,0.00006468549,0.1389891,0.0008700434,0.00005524323,0.002058399,0.001829663,0.0001362641,0.6956764,0.000303348,0.004000457,0.1552232],"study_design_scores_gemma":[0.00002776416,0.0004769975,0.7812911,0.0004990548,0.0001150997,0.01187178,0.00474032,0.0004311682,0.07958763,0.0003148525,0.1206068,0.00003731469],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9481314,0.02153341,0.002315063,0.0007324921,0.000146507,0.0001938655,0.004267456,0.00009923479,0.02258056],"genre_scores_gemma":[0.9584085,0.01648847,0.004943985,0.0007484218,0.00007509681,0.00009990726,0.004503021,0.00003659636,0.01469606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01436773,"threshold_uncertainty_score":0.02856821,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118805758","doi":"10.1128/aem.00739-09","title":"Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":521,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Rumen; Bacteroidetes; Prevotella; Biology; Microbiome; Firmicutes; Acidosis; Animal science; Microbiology; Streptococcus bovis; Food science; 16S ribosomal RNA; Bacteria; Endocrinology; Fermentation; Bioinformatics","authors":[{"name":"Ehsan Khafipour","is_ca":true},{"name":"Shucong Li","is_ca":true},{"name":"Jan C. Plaizier","is_ca":true},{"name":"Denis O. Krause","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01354078141929233,"gpt":0.1993522496740056,"spread":0.1858114682547133,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003260802,0.0005039777,0.0005450602,0.0005214864,0.0003458208,0.000550037,0.0002204609,0.0005083641,0.0004877599],"category_scores_gemma":[0.0003133047,0.0002164161,0.0003729567,0.0003457985,0.0004915886,0.000323874,0.0004056161,0.0005413337,0.000109748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006766794,"about_ca_system_score_gemma":0.0003319159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002937976,"about_ca_topic_score_gemma":0.003831555,"domain_scores_codex":[0.9996257,0.00008447623,0.00002479576,0.0001071229,0.00007677284,0.00008111999],"domain_scores_gemma":[0.9996984,0.00004327185,0.00008570261,0.00002298383,0.00004524751,0.0001043588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005232519,0.0005062295,0.02355698,0.00007006687,0.00008388274,0.00009122117,0.0002132049,0.0002390317,0.9676306,0.00003421704,0.00002668035,0.002315451],"study_design_scores_gemma":[0.0001774255,0.01659374,0.6833608,0.00003459611,0.0003835231,0.0005959579,0.001417313,0.003343453,0.2923774,0.0001554081,0.001503959,0.00005636675],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998987,0.0001501282,0.0005286246,0.000008960826,0.000003776913,0.00003361123,0.0001477222,0.00000370122,0.0001364265],"genre_scores_gemma":[0.9965026,0.0003028344,0.001441017,0.00005737788,0.000006640869,0.0001388331,0.0009862934,0.000005820066,0.0005585388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002937976,"threshold_uncertainty_score":0.005841732,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100338956","doi":"10.1128/aem.68.11.5537-5548.2002","title":"Robust Hydrocarbon Degradation and Dynamics of Bacterial Communities during Nutrient-Enhanced Oil Spill Bioremediation","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":496,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Bedford Institute of Oceanography","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Microcosm; Bioremediation; Temperature gradient gel electrophoresis; Nutrient; Biology; Microbial population biology; Environmental chemistry; Biodegradation; Ecology; Bacteria; Chemistry; 16S ribosomal RNA; Contamination","authors":[{"name":"Wilfred F. M. Röling","is_ca":false},{"name":"Michael G. Milner","is_ca":false},{"name":"D. M. Jones","is_ca":false},{"name":"Kenneth Lee","is_ca":true},{"name":"Fabien Daniel","is_ca":false},{"name":"Richard Swannell","is_ca":false},{"name":"Ian M. Head","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00806162207951596,"gpt":0.1532896805108165,"spread":0.1452280584313005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002817675,0.0003413113,0.0004475229,0.0001716678,0.0001554779,0.000553464,0.0001770915,0.0003394605,0.0002362239],"category_scores_gemma":[0.0004332319,0.000204975,0.0002713033,0.0002189434,0.0002904506,0.0002346194,0.0004499648,0.0003195955,0.0001222409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002918327,"about_ca_system_score_gemma":0.0002792932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00229643,"about_ca_topic_score_gemma":0.00359534,"domain_scores_codex":[0.9995992,0.00005467111,0.00003525035,0.000122881,0.0001136133,0.00007452799],"domain_scores_gemma":[0.999757,0.00003651332,0.00006900931,0.00001660155,0.00007631716,0.00004465249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001656169,0.00002107946,0.001267583,0.00002272442,0.000004943749,0.00001824646,0.00003844026,0.00009873966,0.9974384,0.000005886297,0.000007636877,0.0009105897],"study_design_scores_gemma":[0.0000208869,0.0009396247,0.06550168,0.00001313747,0.00003085765,0.0001194178,0.0002694664,0.001990401,0.9303741,0.00003842997,0.0006805784,0.00002147926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990038,0.0001592419,0.0004496676,0.00001548348,0.000003484285,0.00001302826,0.0002032932,0.00001110191,0.0001409426],"genre_scores_gemma":[0.9958334,0.000273971,0.002437516,0.00003621034,0.00000467447,0.00005112762,0.0006252383,0.0000105327,0.0007273377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00229643,"threshold_uncertainty_score":0.004566133,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097947675","doi":"10.1128/aem.69.9.5157-5169.2003","title":"Cyanobacterial Diversity in Natural and Artificial Microbial Mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a Morphological and Molecular Approach","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":475,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Warwick; British Antarctic Survey; European Commission; Université Laval","keywords":"Phylotype; Biology; Temperature gradient gel electrophoresis; Microbial mat; Internal transcribed spacer; Cyanobacteria; 16S ribosomal RNA; Extreme environment; Phylogenetic diversity; Phylogenetics; Phylogenetic tree; Botany; Gene; Bacteria; Genetics","authors":[{"name":"Arnaud Taton","is_ca":false},{"name":"Stana Grubisic","is_ca":false},{"name":"Evelyne Brambilla","is_ca":false},{"name":"Rutger de Wit","is_ca":false},{"name":"Annick Wilmotte","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007373354549161173,"gpt":0.1811112277945049,"spread":0.1737378732453437,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001320184,0.0002950618,0.000178654,0.001234773,0.0005340687,0.000479464,0.0002514485,0.0002859331,0.0003326306],"category_scores_gemma":[0.0001962322,0.000150982,0.0001252356,0.0007373903,0.0004419966,0.0002292058,0.0003995219,0.0001360139,0.00006925115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005184003,"about_ca_system_score_gemma":0.0003148261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01636254,"about_ca_topic_score_gemma":0.0346777,"domain_scores_codex":[0.9998666,0.00001422921,0.00001084705,0.00004589402,0.00003612711,0.00002633437],"domain_scores_gemma":[0.9999081,0.00001132827,0.00003145611,0.000005267282,0.00002120829,0.00002259993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003326009,0.00004468659,0.3269264,0.0001609361,0.00006360458,0.0002292052,0.001222569,0.000183236,0.6621954,0.00004951597,0.00004104197,0.008550749],"study_design_scores_gemma":[0.000006410461,0.00009356525,0.9928921,0.000006558751,0.00001466951,0.0001939647,0.0004224492,0.0002174449,0.005751561,0.000009103172,0.0003870272,0.000005121345],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999525,0.0001494883,0.00005661535,0.000005558735,8.498962e-7,0.000005090403,0.0001356516,0.00000112524,0.0001207025],"genre_scores_gemma":[0.9983082,0.0002174877,0.000700711,0.00001746929,0.000005481281,0.00002307979,0.0005149136,0.000001732338,0.0002108872],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01636254,"threshold_uncertainty_score":0.0325346,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142176767","doi":"10.1128/aem.72.4.2765-2774.2006","title":"Quantitative PCR Targeting 16S rRNA and Reductive Dehalogenase Genes Simultaneously Monitors Multiple<i>Dehalococcoides</i>Strains","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":474,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Toronto; U.S. Department of Energy; Environmental Security Technology Certification Program; National Science Foundation","keywords":"Dehalococcoides; Biology; Dehalogenase; 16S ribosomal RNA; Gene; Microbiology; Ribosomal RNA; Computational biology; Genetics; Chemistry","authors":[{"name":"Kirsti M. Ritalahti","is_ca":false},{"name":"Benjamin K. Amos","is_ca":false},{"name":"Youlboong Sung","is_ca":false},{"name":"Qingzhong Wu","is_ca":false},{"name":"Stephen S. Koenigsberg","is_ca":false},{"name":"Frank E. Löffler","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005327945064705403,"gpt":0.1823404234369279,"spread":0.1770124783722225,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002223382,0.001932762,0.001190544,0.0009892347,0.000313979,0.001079316,0.000980628,0.0009264108,0.001236284],"category_scores_gemma":[0.002146846,0.0007750627,0.001004923,0.0009688419,0.0008529546,0.0006514743,0.0006388632,0.001186316,0.0007120757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007643274,"about_ca_system_score_gemma":0.0007929406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000968923,"about_ca_topic_score_gemma":0.001780661,"domain_scores_codex":[0.9963294,0.0005671396,0.0003125645,0.001479738,0.0009648437,0.0003462297],"domain_scores_gemma":[0.9981543,0.0004963246,0.000521019,0.0001772083,0.000558332,0.00009277717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004633655,0.00003170649,0.0006380723,0.00005769329,0.000006902404,0.000008352842,0.00002838993,0.0001230011,0.9971323,0.00006508331,0.00002457541,0.001837434],"study_design_scores_gemma":[0.000007039074,0.0001666296,0.001983834,0.00001090006,0.00003372204,0.0000393645,0.0000336933,0.001377027,0.9954412,0.00006012774,0.0008346967,0.00001183634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6700349,0.001951183,0.313103,0.0003098867,0.0002050414,0.001168916,0.006245536,0.00194641,0.005035198],"genre_scores_gemma":[0.6006438,0.002664774,0.3791374,0.0003711774,0.00008181468,0.002543269,0.006239301,0.0004054996,0.007912939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002223382,"threshold_uncertainty_score":0.01175857,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089719624","doi":"10.1128/aem.02250-06","title":"Biochemical and Ecological Control of Geosmin and 2-Methylisoborneol in Source Waters","year":2007,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":457,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Geosmin; Odor; Water source; Ecology; Environmental science; Taste; Environmental chemistry; Biology; Chemistry; Food science; Water resource management","authors":[{"name":"Friedrich Jüttner","is_ca":false},{"name":"Susan B. Watson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007908369491712232,"gpt":0.2130865605321305,"spread":0.2051781910404182,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002012961,0.0002776416,0.0001857473,0.0003825307,0.0001908095,0.0008533555,0.0001904798,0.0003197652,0.0003915622],"category_scores_gemma":[0.0003129233,0.0001038539,0.000192343,0.000318471,0.000388268,0.000467202,0.0004600971,0.000234407,0.0001748123],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005941387,"about_ca_system_score_gemma":0.0005221661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003020526,"about_ca_topic_score_gemma":0.003208732,"domain_scores_codex":[0.9997665,0.00003822114,0.00001769922,0.00005143441,0.00008054851,0.00004551013],"domain_scores_gemma":[0.9998247,0.00003158585,0.0000692302,0.000007692141,0.00003803083,0.00002880362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001157262,0.00003370077,0.004364825,0.0002213934,0.000008678382,0.0002292085,0.0002331222,0.0003175972,0.9860385,0.0006553162,0.0001111005,0.007670725],"study_design_scores_gemma":[0.000010252,0.0006637123,0.1348061,0.00009087306,0.00003561811,0.0007752549,0.002826053,0.0020691,0.842366,0.001503514,0.01479931,0.00005429996],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.9847193,0.009807459,0.001296402,0.0004143118,0.00004440098,0.00002533649,0.0003820476,0.00003910388,0.003271748],"genre_scores_gemma":[0.9913247,0.006225918,0.0009946034,0.00007687645,0.00002661369,0.00001218062,0.0002375557,0.000009637681,0.001091879],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.003020526,"threshold_uncertainty_score":0.006005883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996834987","doi":"10.1128/aem.70.4.1999-2012.2004","title":"Evolution of the Core Genome of <i>Pseudomonassyringae</i> , a Highly Clonal, Endemic PlantPathogen","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":456,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetics; Multilocus sequence typing; Phylogenetic tree; Population; Pseudomonas syringae; Genome; Genetic variation; Housekeeping gene; Evolutionary biology; Gene; Genotype","authors":[{"name":"Sara F. Sarkar","is_ca":true},{"name":"David S. Guttman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007263848878670805,"gpt":0.1493765331676343,"spread":0.1421126842889635,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001923138,0.0001551425,0.0001756256,0.0005133853,0.0002070406,0.0003019624,0.0001548917,0.000180137,0.0003567934],"category_scores_gemma":[0.0005884054,0.0001218106,0.0001720694,0.0003229109,0.0001749374,0.0002070234,0.0002850601,0.0003266475,0.0001470674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002922564,"about_ca_system_score_gemma":0.0001598945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001931645,"about_ca_topic_score_gemma":0.001754128,"domain_scores_codex":[0.9998792,0.00001603689,0.000006074816,0.00004343067,0.00003046691,0.00002472246],"domain_scores_gemma":[0.9995938,0.0001035747,0.0001262263,0.00002893864,0.00006741423,0.00008009021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002791384,0.00005701437,0.09613029,0.00004550101,0.0000336542,0.0001434163,0.0004068003,0.0007146354,0.8881979,0.0001779212,0.00006502656,0.01374881],"study_design_scores_gemma":[0.00001394777,0.0003347317,0.9538212,0.00001506906,0.00005084926,0.001137872,0.0002629489,0.006547104,0.0359718,0.0002627563,0.001562511,0.00001912039],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993522,0.00005052872,0.0003638171,0.000008033477,6.754677e-7,0.000002490709,0.0000754231,0.000005812789,0.0001410882],"genre_scores_gemma":[0.9984742,0.00006254599,0.0008003419,0.00001536329,0.000002787981,0.000003567733,0.0005032741,0.000008054667,0.0001299809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001931645,"threshold_uncertainty_score":0.003840864,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002110057","doi":"10.1128/aem.01682-13","title":"Impact of Manure Fertilization on the Abundance of Antibiotic-Resistant Bacteria and Frequency of Detection of Antibiotic Resistance Genes in Soil and on Vegetables at Harvest","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":453,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Manure; Bacteria; Antibiotic resistance; Biology; Antibiotics; Fertilizer; Biotechnology; Agronomy; Food science; Veterinary medicine; Microbiology; Medicine","authors":[{"name":"Romain Marti","is_ca":true},{"name":"Andrew Scott","is_ca":true},{"name":"Yuan-Ching Tien","is_ca":true},{"name":"Roger Murray","is_ca":true},{"name":"Lyne Sabourin","is_ca":true},{"name":"Yun Zhang","is_ca":true},{"name":"Edward Topp","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00860825209269922,"gpt":0.2090504641914946,"spread":0.2004422120987954,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001997688,0.0003029359,0.0003681054,0.0002850694,0.0002231111,0.0005521196,0.0002328488,0.0003334924,0.001242081],"category_scores_gemma":[0.000675191,0.0001805091,0.0002306927,0.0001963973,0.0002626697,0.0002627233,0.0002874709,0.0002871116,0.0002337348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000394702,"about_ca_system_score_gemma":0.0003645822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003175673,"about_ca_topic_score_gemma":0.006212881,"domain_scores_codex":[0.9995926,0.00008473792,0.00002936535,0.0001243217,0.00008513889,0.00008394805],"domain_scores_gemma":[0.9991097,0.0003702225,0.000209441,0.00004216222,0.0001202435,0.0001482472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001114022,0.0001381558,0.03466897,0.0001028613,0.00002628686,0.0002447151,0.0001227949,0.00009203846,0.9598696,0.00001849091,0.00002772841,0.003574296],"study_design_scores_gemma":[0.00001756964,0.004960266,0.7560667,0.00004340764,0.00008877023,0.0003733566,0.001161481,0.0005957726,0.2354098,0.00007374332,0.001183089,0.00002609275],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991305,0.0001539003,0.0001334289,0.00001377428,0.00000544483,0.000007698069,0.0001879346,0.000006032466,0.000361269],"genre_scores_gemma":[0.9982498,0.0001589264,0.0004360861,0.00003121271,0.00000370632,0.00001258869,0.0002938087,0.000006922825,0.0008068156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003175673,"threshold_uncertainty_score":0.006314397,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103183006","doi":"10.1128/aem.69.6.3085-3092.2003","title":"Characterization of Hydrocarbon-Degrading Microbial Populations in Contaminated and Pristine Alpine Soils","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":451,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"","keywords":"AlkB; Pseudomonas putida; Rhodococcus; Acinetobacter; Biology; Bacteria; Soil contamination; Microbiology; Microorganism; Contamination; Environmental chemistry; Chemistry; Gene; Ecology; Biochemistry","authors":[{"name":"Rosa Margesin","is_ca":false},{"name":"Diane Labbé","is_ca":true},{"name":"Franz Schinner","is_ca":false},{"name":"Charles W. Greer","is_ca":true},{"name":"Lyle G. Whyte","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008118963309509576,"gpt":0.1846102678683763,"spread":0.1764913045588667,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001584092,0.0003846421,0.0002759942,0.0007903697,0.0002311906,0.0006013721,0.0001511617,0.000320451,0.0003919766],"category_scores_gemma":[0.0004158393,0.0001616668,0.0001561001,0.0004259755,0.0002925815,0.0002207135,0.0003429168,0.0001571804,0.0001198237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001090814,"about_ca_system_score_gemma":0.00009502937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001587457,"about_ca_topic_score_gemma":0.001510627,"domain_scores_codex":[0.9997144,0.00003450547,0.00002913555,0.00008783962,0.00008364028,0.00005048619],"domain_scores_gemma":[0.9996932,0.00004778909,0.0001088646,0.00001272966,0.00007111039,0.00006623207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004246172,0.00006247182,0.1870297,0.00009688336,0.00005943075,0.0002211252,0.0006980596,0.0002089897,0.8047134,0.00002779514,0.00001038494,0.006447245],"study_design_scores_gemma":[0.00001037474,0.0004566686,0.9517534,0.00001124603,0.00004213764,0.0006519908,0.0007531024,0.0006243474,0.04513814,0.0000279605,0.0005202272,0.00001042928],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997003,0.00007152784,0.00008746215,0.000002154263,5.584188e-7,0.00000210011,0.00006687849,0.000001471851,0.0000675169],"genre_scores_gemma":[0.9990088,0.0001517622,0.0002932886,0.000007499127,0.000004616281,0.000007856815,0.0003179542,0.0000015844,0.000206522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001587457,"threshold_uncertainty_score":0.003156424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995400078","doi":"10.1128/aem.68.2.485-495.2002","title":"Molecular Analysis of <i>Dehalococcoides</i> 16S Ribosomal DNA from Chloroethene-Contaminated Sites throughout North America and Europe","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":450,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Toronto; McMaster University","keywords":"Dehalococcoides; 16S ribosomal RNA; Biology; Phylotype; Reductive dechlorination; Bioremediation; Phylogenetic tree; Environmental DNA; Ribosomal DNA; Ribosomal RNA; Genetics; Microbiology; Gene; Bacteria; Contamination; Ecology; Chemistry; Biodiversity","authors":[{"name":"Edwin R. Hendrickson","is_ca":false},{"name":"Jo Ann Payne","is_ca":false},{"name":"Roslyn M. Young","is_ca":false},{"name":"Mark G. Starr","is_ca":false},{"name":"M. P. Perry","is_ca":false},{"name":"Stephen R. Fahnestock","is_ca":false},{"name":"D.E. Ellis","is_ca":false},{"name":"Richard C. Ebersole","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004996966476312783,"gpt":0.1672638565825381,"spread":0.1622668901062253,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001874918,0.0003176699,0.0002203972,0.001000775,0.0003110431,0.0004774732,0.0001547268,0.0002564009,0.000329565],"category_scores_gemma":[0.0003777078,0.000141654,0.0001862038,0.000724438,0.0001977838,0.0001372914,0.0002298902,0.0001580664,0.0001261161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002277345,"about_ca_system_score_gemma":0.0002745552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008134363,"about_ca_topic_score_gemma":0.00972612,"domain_scores_codex":[0.9997428,0.00001759163,0.00001818954,0.0001177904,0.0000629213,0.00004059979],"domain_scores_gemma":[0.9996058,0.0000449135,0.0001506308,0.00001566576,0.0001305204,0.00005248157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001451628,0.00004402832,0.1409985,0.0000980925,0.00005202469,0.0001494845,0.0005186627,0.0001867131,0.8484465,0.00003836437,0.0000393159,0.009283178],"study_design_scores_gemma":[0.000007963368,0.0001691255,0.9671274,0.00002504002,0.00003774035,0.0004761484,0.0005144377,0.0002258512,0.02889187,0.00002176753,0.002494907,0.000007709607],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984353,0.00024117,0.0003654943,0.00001125286,0.00000256006,0.00001459354,0.0004254358,0.000004346959,0.0004997668],"genre_scores_gemma":[0.9923172,0.0007341329,0.00289639,0.00005503632,0.000007512561,0.00003256232,0.003068459,0.000008329028,0.0008802965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008134363,"threshold_uncertainty_score":0.01617402,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2177704324","doi":"10.1128/aem.70.1.52-60.2004","title":"Structural and Spectral Features of Selenium Nanospheres Produced by Se-Respiring Bacteria","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":442,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Selenium; Selenate; Extracellular; Electron acceptor; Chemistry; Bacteria; Raman spectroscopy; Intracellular; Electron donor; Biophysics; Biochemistry; Biology; Organic chemistry; Catalysis","authors":[{"name":"Ronald S. Oremland","is_ca":false},{"name":"Mitchell J. Herbel","is_ca":false},{"name":"Jodi Switzer Blum","is_ca":false},{"name":"S. Langley","is_ca":true},{"name":"Terry J. Beveridge","is_ca":true},{"name":"Pulickel M. Ajayan","is_ca":false},{"name":"Thomas E. Sutto","is_ca":false},{"name":"Amanda Ellis","is_ca":false},{"name":"Seamus A. Curran","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005606092655820396,"gpt":0.1917972589286539,"spread":0.1861911662728335,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008270101,0.0001688706,0.00009509237,0.0002481577,0.0001139463,0.0001427508,0.0001509443,0.0002156282,0.0003425868],"category_scores_gemma":[0.0002148668,0.0001354355,0.0001354455,0.0001136485,0.0001901921,0.0001203126,0.0001295561,0.0001492962,0.0001076635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001216299,"about_ca_system_score_gemma":0.00007073506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000561101,"about_ca_topic_score_gemma":0.0004247818,"domain_scores_codex":[0.9999419,0.000007255182,0.000003164532,0.00001287432,0.00002470436,0.00001007176],"domain_scores_gemma":[0.9998626,0.00003537125,0.00003316221,0.000009785162,0.0000367638,0.00002248124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001824984,0.000004191128,0.0005339205,0.000007548997,0.000002336713,0.00002167479,0.00001849907,0.00003494498,0.9990288,0.00001520256,0.000005740537,0.0003088229],"study_design_scores_gemma":[0.000008067063,0.000195353,0.06541213,0.000005483419,0.00001459545,0.0003867579,0.0001939009,0.001426393,0.9317126,0.00005400664,0.0005819888,0.000008807486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991968,0.00009667787,0.0003975515,0.000008166136,0.000001380525,0.000002517878,0.00004827958,0.00001143535,0.0002371403],"genre_scores_gemma":[0.9983847,0.00008657281,0.0008735713,0.00001117913,0.0000019811,0.000005912635,0.0002017192,0.00001185744,0.0004223394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000561101,"threshold_uncertainty_score":0.001146019,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135642891","doi":"10.1128/aem.70.10.5750-5755.2004","title":"Mechanisms of Bactericidal Action of Cinnamaldehyde against <i>Listeria monocytogenes</i> and of Eugenol against <i>L. monocytogenes</i> and <i>Lactobacillus sakei</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Essential Oils and Antimicrobial Activity","field":"Agricultural and Biological Sciences","cited_by":431,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Eugenol; Cinnamaldehyde; Lactobacillus sakei; Listeria monocytogenes; Chemistry; Extracellular; Microbiology; Biochemistry; Bacteria; Lactobacillus; Biology; Organic chemistry; Fermentation","authors":[{"name":"Alexander Gill","is_ca":true},{"name":"Richard A. Holley","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01183410003005163,"gpt":0.1812741075688684,"spread":0.1694400075388167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001655962,0.0008406875,0.0002444038,0.0002306043,0.0001316348,0.0003437071,0.0004199931,0.0004475822,0.001369711],"category_scores_gemma":[0.0001210789,0.0002213904,0.0005198816,0.0001146058,0.0003202882,0.0002572994,0.0002349769,0.0003421944,0.0002686027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005640185,"about_ca_system_score_gemma":0.0002761832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001297572,"about_ca_topic_score_gemma":0.0008701585,"domain_scores_codex":[0.9998754,0.00002050612,0.000009347541,0.00001880922,0.00002951383,0.00004635378],"domain_scores_gemma":[0.9998891,0.00001695756,0.00004074927,0.00001021852,0.00002250758,0.00002043838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003578813,0.00002008454,0.0001782931,0.0001204319,0.000008670053,0.00006623712,0.00002037912,0.0001147975,0.9971632,0.0002061499,0.00002745074,0.001716391],"study_design_scores_gemma":[0.00002892784,0.0004160716,0.005083361,0.00001293984,0.00002193188,0.0001554899,0.00003305116,0.0003674566,0.9928631,0.00008085247,0.0009284233,0.000008548241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9797266,0.01101157,0.005190113,0.0001992684,0.00006113874,0.0001034963,0.0005511377,0.0001571465,0.002999586],"genre_scores_gemma":[0.9926739,0.002866108,0.001830882,0.0001094203,0.000009560749,0.00006272835,0.0004174429,0.00001094747,0.002018927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001369711,"threshold_uncertainty_score":0.004582167,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1968289569","doi":"10.1128/aem.71.12.8201-8206.2005","title":"Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":428,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Betaproteobacteria; Actinobacteria; Verrucomicrobia; Ecology; Taxon; Proteobacteria; Biology; Environmental science; Bacteria","authors":[{"name":"Eva S. Lindström","is_ca":true},{"name":"Miranda P. Kamst‐van Agterveld","is_ca":false},{"name":"Gabriël Zwart","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002928004983571202,"gpt":0.1503245137742725,"spread":0.1473965087907013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002889043,0.000155547,0.0003045349,0.0007486238,0.0002194787,0.0004194415,0.00008426664,0.0002396142,0.0006379307],"category_scores_gemma":[0.0006755702,0.0002008731,0.0001446927,0.0004695403,0.0002773892,0.0002691105,0.000322526,0.0001054951,0.0001249674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001495493,"about_ca_system_score_gemma":0.00009920001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001292029,"about_ca_topic_score_gemma":0.001903157,"domain_scores_codex":[0.9997962,0.00003408838,0.0000214374,0.00006920816,0.0000292283,0.00004983004],"domain_scores_gemma":[0.9994422,0.0001384236,0.0002136708,0.00002559143,0.00008413666,0.00009606481],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005615929,0.00003006112,0.8709407,0.00004451202,0.00008519515,0.00009163435,0.0004375169,0.000235123,0.1214618,0.00004464939,0.00003400338,0.006033103],"study_design_scores_gemma":[0.000002742177,0.00009804002,0.9975743,0.000002127728,0.0000125165,0.0001028973,0.000140773,0.0001478079,0.001822294,0.00002474355,0.00006788386,0.000003813927],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997509,0.0000544892,0.00007698234,0.000001831254,2.41159e-7,8.677258e-7,0.00003466036,0.000002329199,0.00007775537],"genre_scores_gemma":[0.9996045,0.00003326986,0.0001522826,0.000003222463,7.444349e-7,0.000002757399,0.0001115031,0.000001318586,0.00009042462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001292029,"threshold_uncertainty_score":0.002569079,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168454395","doi":"10.1128/aem.67.3.1076-1084.2001","title":"Chromate Reduction by a Pseudomonad Isolated from a Site Contaminated with Chromated Copper Arsenate","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":397,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chromate conversion coating; Arsenate; Chemistry; Chromated copper arsenate; Anaerobic exercise; Nuclear chemistry; Copper; Metal; Chromium; Inorganic chemistry; Arsenic; Biology; Organic chemistry","authors":[{"name":"J. K. McLean","is_ca":true},{"name":"Terry J. Beveridge","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.001777823952678146,"gpt":0.150161287899186,"spread":0.1483834639465078,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001315327,0.0007174887,0.0003218441,0.0003199165,0.0002936253,0.0006650235,0.0002971069,0.0004451112,0.0004524332],"category_scores_gemma":[0.0003098383,0.000214497,0.0003292334,0.0003241326,0.0002746858,0.0002677474,0.0004472741,0.0003392785,0.0004084023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002743212,"about_ca_system_score_gemma":0.0003665815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008757036,"about_ca_topic_score_gemma":0.004459404,"domain_scores_codex":[0.9996738,0.00004797905,0.00001617574,0.00008052822,0.0001082187,0.00007321194],"domain_scores_gemma":[0.9998096,0.00002495265,0.00003888162,0.00002095616,0.00005115173,0.00005455126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001254762,0.00003882704,0.002357152,0.00005766159,0.00001109109,0.0001287611,0.00007352375,0.00003841984,0.9951769,0.00003205919,0.00004478116,0.001915347],"study_design_scores_gemma":[0.00006534142,0.002604833,0.1276745,0.00003133675,0.0001101704,0.002927426,0.0009735426,0.001978634,0.8585464,0.0000964283,0.004942324,0.00004909806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981303,0.0002832174,0.0007640102,0.00005044182,0.00001690395,0.00001610106,0.0001627428,0.00003595058,0.000540274],"genre_scores_gemma":[0.995027,0.0003614885,0.001922984,0.00004923776,0.00001063996,0.00001202197,0.0008811906,0.00002383568,0.001711569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008757036,"threshold_uncertainty_score":0.01741213,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166618055","doi":"10.1128/aem.69.12.7343-7353.2003","title":"Concomitant Induction of Systemic Resistance to <i>Pseudomonas syringae</i> pv. <i>lachrymans</i> in Cucumber by <i>Trichoderma asperellum</i> (T-203) and Accumulation ofPhytoalexins","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":389,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"United States - Israel Binational Agricultural Research and Development Fund","keywords":"Pseudomonas syringae; Phenylalanine ammonia-lyase; Biology; Phenylpropanoid; Pseudomonas; Rhizobacteria; Microbiology; Systemic acquired resistance; Botany; Rhizosphere; Bacteria; Biochemistry; Phenylalanine; Enzyme; Gene; Biosynthesis; Pathogen","authors":[{"name":"Iris Yedidia","is_ca":false},{"name":"Michal Shoresh","is_ca":false},{"name":"Zohar Kerem","is_ca":false},{"name":"Nicole Benhamou","is_ca":true},{"name":"Yoram Kapulnik","is_ca":false},{"name":"I. Chet","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01058042699554276,"gpt":0.1953850438486802,"spread":0.1848046168531374,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001135597,0.0006609594,0.0003361781,0.0001671441,0.0001211357,0.000252193,0.0001691928,0.0002465831,0.001108338],"category_scores_gemma":[0.0001186617,0.0001629524,0.0002983658,0.0001108147,0.000205242,0.0001880813,0.0002455967,0.0005288125,0.0002935152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003163395,"about_ca_system_score_gemma":0.0002172157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001268638,"about_ca_topic_score_gemma":0.001387179,"domain_scores_codex":[0.9998515,0.00001839396,0.00001474168,0.00004119406,0.00003190957,0.00004222169],"domain_scores_gemma":[0.999768,0.00003911214,0.00007000897,0.00002768339,0.00002465525,0.00007057211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002117546,0.000004969461,0.00006726923,0.00001452739,0.00000164439,0.00002265123,0.000007018464,0.000008742771,0.9997084,0.00000595287,0.000003127852,0.0001344686],"study_design_scores_gemma":[0.00001028513,0.0006129857,0.007888868,0.000003307344,0.00001479381,0.0002329656,0.00003559472,0.0003045285,0.990396,0.00001511348,0.0004794727,0.0000061658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968268,0.0005170623,0.001473147,0.00005019213,0.00001805415,0.00003651733,0.0003387431,0.0001208756,0.0006185038],"genre_scores_gemma":[0.9965443,0.0002348469,0.001001092,0.0000272538,0.00000842488,0.00002553727,0.0005778556,0.00002661467,0.001554155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001268638,"threshold_uncertainty_score":0.003707767,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120918440","doi":"10.1128/aem.66.8.3214-3220.2000","title":"Microbial Life beneath a High Arctic Glacier","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":384,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Glacier; Arctic; Psychrophile; Geology; Snow; Permafrost; Oceanography; Environmental chemistry; Ecology; Biology; Chemistry; Geomorphology; Paleontology; Bacteria","authors":[{"name":"Mark Skidmore","is_ca":true},{"name":"Julia M. Foght","is_ca":true},{"name":"Martin Sharp","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003235427721422394,"gpt":0.1653007000066201,"spread":0.1620652722851977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001071272,0.0003245596,0.0002026801,0.0004118438,0.000929411,0.0007837841,0.0001574484,0.0002704603,0.0006693086],"category_scores_gemma":[0.0001539754,0.0001360777,0.0001350463,0.000348616,0.0002930796,0.0001896843,0.0003842194,0.0001932941,0.0001749155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004891241,"about_ca_system_score_gemma":0.0004708603,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01342094,"about_ca_topic_score_gemma":0.0202515,"domain_scores_codex":[0.9999111,0.00001083094,0.000004137687,0.00002191449,0.00001977562,0.00003226045],"domain_scores_gemma":[0.9998958,0.00001114245,0.0000243439,0.000005846069,0.00002769971,0.00003526875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004267232,0.00005290711,0.2323501,0.0001589448,0.00005811574,0.001020888,0.00142503,0.0008004995,0.7506993,0.0001869731,0.0001986066,0.0126221],"study_design_scores_gemma":[0.00001070242,0.0003869619,0.9633766,0.00002694007,0.00006207889,0.0007673448,0.002057539,0.0008346043,0.02936052,0.0001149513,0.002988121,0.00001360795],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998996,0.0002488928,0.00006587926,0.00001240896,0.000002740256,0.000002746131,0.00007765539,0.000005842468,0.0005879249],"genre_scores_gemma":[0.9984475,0.0002636772,0.0003616317,0.00002380791,0.000007664137,0.000003287937,0.0003727321,0.000002430266,0.000517389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01342094,"threshold_uncertainty_score":0.02668566,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157683553","doi":"10.1128/aem.69.9.5178-5185.2003","title":"Real-Time PCR for Quantification of <i>Giardia</i> and <i>Cryptosporidium</i> in Environmental Water Samples and Sewage","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":383,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Alberta","keywords":"Cryptosporidium; Giardia; Sewage; Biology; Environmental science; Environmental chemistry; Microbiology; Feces; Environmental engineering; Chemistry","authors":[{"name":"Rebecca A. Guy","is_ca":true},{"name":"Pierre Payment","is_ca":true},{"name":"Ulrich J. Krull","is_ca":true},{"name":"Paul A. Horgen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006383649498178403,"gpt":0.1863802744050994,"spread":0.1799966249069209,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00239415,0.001277625,0.001142329,0.001327273,0.0004193921,0.001187958,0.001120029,0.001188388,0.002288136],"category_scores_gemma":[0.002621561,0.0009548762,0.001573459,0.001182084,0.001003387,0.0009136678,0.0007711933,0.001880111,0.001305677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006690048,"about_ca_system_score_gemma":0.001191413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005477525,"about_ca_topic_score_gemma":0.001208332,"domain_scores_codex":[0.9959462,0.0008641124,0.0003340434,0.001619203,0.0009508012,0.0002856555],"domain_scores_gemma":[0.9984395,0.0006963934,0.0002984487,0.0001576815,0.000342934,0.0000651008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001483627,0.0001183678,0.001371927,0.0003561906,0.00003123116,0.00006534373,0.0002062181,0.0005560084,0.9882422,0.0004758241,0.0003160119,0.008112368],"study_design_scores_gemma":[0.00005624638,0.0009060102,0.005529893,0.000168784,0.0001531894,0.0003571009,0.0001320648,0.01325602,0.9613758,0.0005866239,0.01739554,0.0000826148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2909322,0.004451037,0.6834776,0.000594756,0.0006639404,0.001836897,0.006647361,0.003249765,0.00814646],"genre_scores_gemma":[0.2536012,0.003036993,0.7158497,0.0008196986,0.0001313282,0.004835276,0.008515428,0.00038286,0.01282762],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00239415,"threshold_uncertainty_score":0.01266164,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137106589","doi":"10.1128/aem.01982-07","title":"Role of Migratory Birds in Introduction and Range Expansion of <i>Ixodes scapularis</i> Ticks and of <i>Borrelia burgdorferi</i> and <i>Anaplasma phagocytophilum</i> in Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":378,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Queen's University; Birds Canada; International Development Research Centre; University of Guelph; Université de Montréal; Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Natural Resources Canada; National Institutes of Health","keywords":"Ixodes scapularis; Anaplasma phagocytophilum; Borrelia burgdorferi; Biology; Anaplasmosis; Lyme disease; Nymph; Tick; Anaplasma; Borrelia; Veterinary medicine; Ixodidae; Virology; Zoology; Immunology; Medicine","authors":[{"name":"Nicholas H. Ogden","is_ca":true},{"name":"L. Robbin Lindsay","is_ca":true},{"name":"Klára Hanincová","is_ca":false},{"name":"Ian K. Barker","is_ca":true},{"name":"M. Bigras-Poulin","is_ca":true},{"name":"Dominique Charron","is_ca":true},{"name":"Audrey E. Heagy","is_ca":true},{"name":"Charles M. Francis","is_ca":false},{"name":"Christopher J. O’Callaghan","is_ca":true},{"name":"I. Schwartz","is_ca":false},{"name":"R. Alex Thompson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002486259325721165,"gpt":0.1468855682173325,"spread":0.1443993088916113,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003807621,0.0001645331,0.0001365171,0.0004736486,0.001029681,0.0008549768,0.0004180992,0.0002417393,0.0006923833],"category_scores_gemma":[0.0008061148,0.0002166424,0.0002145542,0.0004628642,0.0005772098,0.0002272225,0.0004064638,0.0002816179,0.00006406416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006315412,"about_ca_system_score_gemma":0.004686204,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9496651,"about_ca_topic_score_gemma":0.9777274,"domain_scores_codex":[0.9997365,0.00003694244,0.00001399289,0.00005377005,0.00006007294,0.00009880051],"domain_scores_gemma":[0.9990498,0.00009561661,0.0002823809,0.00002786718,0.0002340253,0.0003102874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007223069,0.00001455847,0.9949725,0.00001419239,0.0000282416,0.00006707255,0.0005057102,0.0001177914,0.0005675862,0.00004225774,0.0001955273,0.003402445],"study_design_scores_gemma":[0.000001374908,0.000008481308,0.9991744,0.000007697357,0.000006725148,0.00003019592,0.0004255123,0.0001269178,0.00003548018,0.000004942892,0.0001762527,0.000001962582],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988846,0.0003387047,0.00002656668,0.00006828672,0.000002353394,0.000005731252,0.0001619685,0.000001850546,0.0005099378],"genre_scores_gemma":[0.999314,0.0002498107,0.00005527737,0.00002161557,0.000001754635,0.00000195563,0.0001418627,7.440724e-7,0.0002130333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05033493,"threshold_uncertainty_score":0.1012627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146477624","doi":"10.1128/aem.67.6.2469-2475.2001","title":"Selection of Specific Endophytic Bacterial Genotypes by Plants in Response to Soil Contamination","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant responses to water stress","field":"Agricultural and Biological Sciences","cited_by":371,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"CARE Canada; National Research Council Canada; Biotechnology Research Institute; Fisheries and Oceans Canada","funders":"","keywords":"AlkB; Rhizosphere; Biology; Bacteria; Bioremediation; Contamination; Soil contamination; Phytoremediation; Botany; Soil microbiology; Monooxygenase; Environmental chemistry; Chemistry; Gene; Ecology; Escherichia coli; Cytochrome P450","authors":[{"name":"Steven D. Siciliano","is_ca":true},{"name":"Nathalie Fortin","is_ca":true},{"name":"Anca Mihoc","is_ca":true},{"name":"Gesine Wisse","is_ca":true},{"name":"Suzanne Labelle","is_ca":true},{"name":"Danielle Beaumier","is_ca":true},{"name":"Danielle Ouellette","is_ca":true},{"name":"Réal Roy","is_ca":true},{"name":"Lyle G. Whyte","is_ca":true},{"name":"M.K. Banks","is_ca":false},{"name":"A. P. Schwab","is_ca":false},{"name":"Ken Lee","is_ca":true},{"name":"Charles W. Greer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0047188205477427,"gpt":0.1551412683097839,"spread":0.1504224477620412,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003403377,0.0004864969,0.0005120428,0.0003439752,0.0001655186,0.0004446918,0.0002622516,0.0005080788,0.000572054],"category_scores_gemma":[0.0003057081,0.0003344236,0.0002912353,0.0001882526,0.0002806222,0.0002537266,0.0005900973,0.0007598524,0.0001663814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002686669,"about_ca_system_score_gemma":0.0001862629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004180643,"about_ca_topic_score_gemma":0.0006041926,"domain_scores_codex":[0.9996442,0.00007205207,0.00002742289,0.0001086215,0.00005798155,0.00008973629],"domain_scores_gemma":[0.9994963,0.0001483271,0.00009287825,0.0000644641,0.00005495124,0.0001430137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006428931,0.00001807426,0.0009509853,0.00001095782,0.000005481461,0.00002289114,0.00001475223,0.00001765259,0.9983637,0.000009741921,0.000003243869,0.0005182305],"study_design_scores_gemma":[0.00005592344,0.002510501,0.2505106,0.00001579502,0.000096911,0.0009845084,0.0003387381,0.002172851,0.741416,0.0001734609,0.001685797,0.00003892538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989838,0.0001161527,0.0005737745,0.00002038569,0.000003491693,0.00001626506,0.00007063307,0.00002546336,0.0001900448],"genre_scores_gemma":[0.9970445,0.0001209657,0.001605239,0.00004694833,0.000004749566,0.0000445231,0.000261153,0.00001977041,0.0008520965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000572054,"threshold_uncertainty_score":0.00194931,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2143303915","doi":"10.1128/aem.69.9.5543-5554.2003","title":"Scanning Transmission X-Ray, Laser Scanning, and Transmission Electron Microscopy Mapping of the Exopolymeric Matrix of Microbial Biofilms","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":360,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Brockhouse Institute for Materials Research","funders":"","keywords":"Biofilm; Microscopy; Macromolecule; Correlative; Transmission electron microscopy; Chemical imaging; Confocal; Nucleic acid; Materials science; Chemistry; Biophysics; Nanotechnology; Biology; Bacteria; Optics; Biochemistry; Remote sensing; Physics","authors":[{"name":"John R. Lawrence","is_ca":false},{"name":"G. D. W. Swerhone","is_ca":false},{"name":"Gary G. Leppard","is_ca":false},{"name":"Tohru Araki","is_ca":true},{"name":"X. Zhang","is_ca":true},{"name":"Marcia West","is_ca":true},{"name":"Adam P. Hitchcock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003477454002709028,"gpt":0.1955811655200738,"spread":0.1921037115173648,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003613831,0.0003388452,0.0001582807,0.0006510213,0.0003621358,0.0002749237,0.0002620586,0.0002681396,0.001123316],"category_scores_gemma":[0.0002936093,0.0002742517,0.000176381,0.0002862929,0.0002033639,0.0004181798,0.0002770472,0.0003386122,0.0003305253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002201439,"about_ca_system_score_gemma":0.0002746093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009219759,"about_ca_topic_score_gemma":0.001756432,"domain_scores_codex":[0.9998899,0.00001553611,0.000008151601,0.0000112809,0.00006061977,0.00001457274],"domain_scores_gemma":[0.9998323,0.00004055764,0.00002338819,0.00001502608,0.00006123916,0.00002750894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001480186,0.000006741533,0.0001638582,0.00002685457,0.000002567176,0.00003298459,0.00001278083,0.00007811628,0.9975193,0.00009333347,0.00002705978,0.002021522],"study_design_scores_gemma":[0.00001369986,0.0001456764,0.0104331,0.00001937474,0.00001514113,0.000751487,0.00007404621,0.004786022,0.9804648,0.0002946033,0.002989913,0.0000121524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9276413,0.003936283,0.06224649,0.0002495651,0.00003167157,0.0001264708,0.0007426499,0.0002624956,0.00476313],"genre_scores_gemma":[0.8868142,0.004444941,0.1026202,0.00008451175,0.00001947466,0.0001322958,0.0007927562,0.00007599861,0.005015636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001123316,"threshold_uncertainty_score":0.003757834,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2591278429","doi":"10.1128/aem.00061-17","title":"Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":359,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Biology; Lachnospiraceae; Rumen; Firmicutes; Microbiome; Ruminococcus; Bacteroidetes; Metagenomics; Proteobacteria; Euryarchaeota; Bacterial phyla; Microbiology; Beef cattle; 16S ribosomal RNA; Food science; Bacteria; Biochemistry; Animal science; Fermentation; Genetics; Gene","authors":[{"name":"Fuyong Li","is_ca":true},{"name":"Le Luo Guan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01286870580730646,"gpt":0.2080274396097305,"spread":0.195158733802424,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004740696,0.0003206591,0.0003554997,0.0009481026,0.0002599008,0.0006579041,0.000132703,0.0003051842,0.0003638439],"category_scores_gemma":[0.0003459837,0.0002371294,0.0002483522,0.0004954587,0.0002232826,0.0002378828,0.0002409978,0.0002704789,0.00007424597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002383989,"about_ca_system_score_gemma":0.0001745683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002838952,"about_ca_topic_score_gemma":0.003438645,"domain_scores_codex":[0.9997112,0.00006087646,0.00001653345,0.00007586928,0.0000675528,0.00006782521],"domain_scores_gemma":[0.9997173,0.00005441145,0.0001028273,0.00001343412,0.00005878681,0.00005328591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007953998,0.00006181791,0.1945953,0.00009218909,0.0001683128,0.00006138131,0.0002505534,0.0001808671,0.7967384,0.00003516623,0.00003434804,0.00698626],"study_design_scores_gemma":[0.00000592514,0.0002777052,0.9750622,0.00001308133,0.00008825507,0.0001365163,0.0003562996,0.001084899,0.02257939,0.00005187422,0.0003348071,0.000009216618],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999043,0.0003077034,0.0003835095,0.000008283916,0.000001516041,0.000002799713,0.0001832303,0.000002223614,0.0000676919],"genre_scores_gemma":[0.9985877,0.0001907299,0.0006430936,0.00002585155,0.000004609875,0.00000741511,0.0003541973,0.000002631133,0.000183654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002838952,"threshold_uncertainty_score":0.005644917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148686392","doi":"10.1128/aem.02815-08","title":"Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":341,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rumen; Biology; 16S ribosomal RNA; Strain (injury); Population; Microbial ecology; Genotype; Animal science; Methanogenesis; Ecology; Bacteria; Veterinary medicine; Microbiology; Food science; Methane; Gene; Fermentation; Genetics","authors":[{"name":"Mi Zhou","is_ca":false},{"name":"Emma Hernandez‐Sanabria","is_ca":false},{"name":"Le Luo Guan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005761621224787914,"gpt":0.1826183180866755,"spread":0.1768566968618876,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006614011,0.0003967352,0.0005609532,0.001099352,0.0003536201,0.000738133,0.0001607778,0.0004491261,0.0003249491],"category_scores_gemma":[0.0007647382,0.0002756476,0.0002792442,0.0006289599,0.0004045792,0.0003816967,0.0003810265,0.0003332638,0.0001279041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002533747,"about_ca_system_score_gemma":0.0001620744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001588235,"about_ca_topic_score_gemma":0.002172529,"domain_scores_codex":[0.9994878,0.0001216459,0.00005716625,0.0001153717,0.0001015292,0.0001165295],"domain_scores_gemma":[0.9994235,0.000115516,0.0002146318,0.00002810467,0.00009918424,0.0001190617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001893518,0.0001490795,0.3907287,0.0001259293,0.0001795484,0.0001152512,0.0006707211,0.0001251231,0.5997794,0.0000336646,0.00001417447,0.006184848],"study_design_scores_gemma":[0.000006230573,0.0004862052,0.9849592,0.000006677872,0.00007489871,0.000169316,0.0004230995,0.0001789616,0.01355686,0.0000161095,0.0001154593,0.000007010915],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996562,0.0001093531,0.0001298574,0.000002353712,6.131094e-7,0.000002378134,0.0000459087,7.553575e-7,0.00005260874],"genre_scores_gemma":[0.9986853,0.0001788319,0.0005666554,0.00001601156,0.000004790261,0.00001063639,0.0003467852,0.000002618651,0.0001883235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001588235,"threshold_uncertainty_score":0.003497899,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084599172","doi":"10.1128/aem.71.11.6753-6761.2005","title":"Antimicrobial Resistance and Virulence Genes of <i>Escherichia coli</i> Isolates from Swine in Ontario","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":337,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Virulence; Microbiology; Escherichia coli; Biology; Tetracycline; Antibiotic resistance; Enterotoxigenic Escherichia coli; Antimicrobial; Streptomycin; Pathogenic Escherichia coli; Plasmid; Gene; Antibiotics; Enterotoxin; Genetics","authors":[{"name":"Patrick Boerlin","is_ca":true},{"name":"Rebeccah Travis","is_ca":true},{"name":"Carlton Gyles","is_ca":true},{"name":"Richard J. Reid‐Smith","is_ca":true},{"name":"Nicol Janecko","is_ca":true},{"name":"Vivian M. Nicholson","is_ca":true},{"name":"Scott A. McEwen","is_ca":true},{"name":"Robert Friendship","is_ca":true},{"name":"Marie Archambault","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003356540200404485,"gpt":0.1680335911111431,"spread":0.1646770509107386,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001339152,0.0002430805,0.0002354539,0.000738279,0.001032226,0.000563951,0.0002760981,0.0002502068,0.0006088243],"category_scores_gemma":[0.000520514,0.0002772186,0.0002084857,0.001064558,0.0004266087,0.0001254108,0.0003129579,0.0001682258,0.000124221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004257089,"about_ca_system_score_gemma":0.00349002,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.762312,"about_ca_topic_score_gemma":0.8884844,"domain_scores_codex":[0.9996561,0.00001377076,0.00002337044,0.00005377158,0.0001332671,0.0001197736],"domain_scores_gemma":[0.9992753,0.00004283772,0.0002221357,0.0000198198,0.000313463,0.0001264964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001188843,0.00001726786,0.9792336,0.00004803154,0.00001573522,0.0006610368,0.0009183479,0.00007315468,0.01477286,0.00001434787,0.000278595,0.003848095],"study_design_scores_gemma":[0.000002458829,0.00003151112,0.9980904,0.000006451801,0.000006116475,0.0001913593,0.0004322116,0.00003954956,0.0004841559,0.000002583603,0.0007107257,0.000002392475],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985504,0.00009361163,0.00004381384,0.00002789906,0.000001938857,0.00001451957,0.0005460933,0.00000350147,0.0007182383],"genre_scores_gemma":[0.9966198,0.0002675341,0.0002264847,0.0000614712,0.00000404147,0.0000140549,0.001921394,0.000003861934,0.0008812941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.762312,"threshold_uncertainty_score":0.4781756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009594480","doi":"10.1128/aem.01665-12","title":"Bioremediation and Tolerance of Humans to Heavy Metals through Microbial Processes: a Potential Role for Probiotics?","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Heavy metals in environment","field":"Environmental Science","cited_by":324,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Bioremediation; Heavy metals; Biology; Biotechnology; Microbiology; Bacteria; Biochemical engineering; Environmental chemistry; Chemistry; Genetics; Engineering","authors":[{"name":"Marc Monachese","is_ca":true},{"name":"Jeremy P. Burton","is_ca":true},{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00712311785864432,"gpt":0.2079283485845212,"spread":0.2008052307258769,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005194462,0.0004345648,0.0007458772,0.000261633,0.000149073,0.001093228,0.0003645246,0.001388168,0.002210064],"category_scores_gemma":[0.0005473621,0.0001230588,0.0003305474,0.0002437155,0.0007859647,0.001016241,0.0005579306,0.0007686412,0.0005375415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001732614,"about_ca_system_score_gemma":0.0003923235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000349615,"about_ca_topic_score_gemma":0.0005400971,"domain_scores_codex":[0.9998327,0.0000659435,0.000007868372,0.0000212991,0.00002912727,0.000043057],"domain_scores_gemma":[0.999824,0.00004602487,0.0000389404,0.00001173675,0.00003966411,0.00003965968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001240599,0.0005788978,0.00883225,0.007500137,0.0002645276,0.001349706,0.001054214,0.0004954768,0.206237,0.0177237,0.01220125,0.7425222],"study_design_scores_gemma":[0.0003522658,0.01011571,0.06789359,0.007669642,0.0008153379,0.008344041,0.008063706,0.00262111,0.08373055,0.06374592,0.746422,0.0002261813],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05786439,0.8940276,0.002955956,0.03931917,0.001069045,0.00002439345,0.00006527732,0.00004645147,0.004627717],"genre_scores_gemma":[0.2688443,0.7152827,0.004171845,0.005627397,0.0008869921,0.00004391055,0.0000619739,0.00001470882,0.005066061],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002210064,"threshold_uncertainty_score":0.00739336,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142796911","doi":"10.1128/aem.02332-06","title":"Oil Field Souring Control by Nitrate-Reducing <i>Sulfurospirillum</i> spp. That Outcompete Sulfate-Reducing Bacteria for Organic Electron Donors","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":316,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Alberta; ConocoPhillips","keywords":"Nitrate; Desulfovibrio; Sulfate; Nitrite; Sulfate-reducing bacteria; Chemistry; Bioreactor; Sulfide; Bacteria; Environmental chemistry; Microbiology; Nitrification; Sulfur; Food science; Biology; Nitrogen; Organic chemistry","authors":[{"name":"Casey R. J. Hubert","is_ca":true},{"name":"Gerrit Voordouw","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003465917645174579,"gpt":0.1848558968166648,"spread":0.1813899791714902,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003187395,0.0007465894,0.0006381338,0.0002240358,0.0002117636,0.0004731876,0.0004048098,0.0002791875,0.0006705316],"category_scores_gemma":[0.0003377782,0.0002192563,0.0004402622,0.0002106248,0.000219706,0.0002361824,0.0003902663,0.0004384377,0.0002401146],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004663128,"about_ca_system_score_gemma":0.0006649342,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00330278,"about_ca_topic_score_gemma":0.006093754,"domain_scores_codex":[0.9996182,0.00005311838,0.00004232928,0.00009336962,0.0001147605,0.00007824683],"domain_scores_gemma":[0.9996448,0.00007181481,0.00008881005,0.00003005407,0.00007326121,0.00009129425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007563961,0.00003954856,0.0002769182,0.00001658555,0.000002463819,0.00001753854,0.000007876636,0.00002177983,0.9988775,0.000007916965,0.00001286124,0.0006433572],"study_design_scores_gemma":[0.00001695331,0.0006480277,0.004776111,0.000005751715,0.0000187927,0.00006876288,0.0000443006,0.0008190463,0.9930899,0.0000160846,0.0004906511,0.000005747274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975096,0.0001843394,0.001412143,0.00007037356,0.00002302423,0.00005090515,0.0001529722,0.00007986547,0.0005166948],"genre_scores_gemma":[0.9831005,0.0003491957,0.01279904,0.0001461975,0.00002508485,0.0001089512,0.0008204126,0.00006826989,0.002582418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00330278,"threshold_uncertainty_score":0.006567121,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170944238","doi":"10.1128/aem.07759-11","title":"Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":315,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Rumen; Biology; Fibrobacter succinogenes; Prevotella; Temperature gradient gel electrophoresis; Ruminococcus; Forage; Population; Animal science; Beef cattle; Microbial population biology; Animal feed; Food science; Fermentation; Agronomy; Microbiology; Bacteria; Feces","authors":[{"name":"Ciara A. Carberry","is_ca":false},{"name":"D.A. Kenny","is_ca":false},{"name":"Sukkyan Han","is_ca":true},{"name":"Matthew S. McCabe","is_ca":false},{"name":"Sinéad M. Waters","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01953850362116747,"gpt":0.1952549108320832,"spread":0.1757164072109157,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004467619,0.0002446868,0.0003692628,0.0003847798,0.00020557,0.0004601284,0.0001435377,0.000244346,0.0005312109],"category_scores_gemma":[0.0006313433,0.0001780496,0.0001953323,0.0002408336,0.0003740177,0.000169326,0.0002852894,0.0003250569,0.00008884898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003414783,"about_ca_system_score_gemma":0.0001517153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002060437,"about_ca_topic_score_gemma":0.003784753,"domain_scores_codex":[0.999626,0.0001214022,0.00003182455,0.00009310671,0.00006142603,0.00006626635],"domain_scores_gemma":[0.9992377,0.0002104466,0.0001994717,0.00005801703,0.00005914022,0.000235306],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01070371,0.0005207493,0.3177453,0.0001018887,0.0004556045,0.0001246616,0.0003256991,0.0004159079,0.6596573,0.00004112586,0.00006504249,0.009842942],"study_design_scores_gemma":[0.000008922945,0.0008931831,0.9929338,0.000002769987,0.00003820809,0.00005673,0.00008204857,0.0002741308,0.005621751,0.00001272095,0.00007123535,0.000004572292],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998441,0.00004688288,0.00003620113,0.000003347191,4.410308e-7,6.393553e-7,0.00003657017,9.39907e-7,0.00003070186],"genre_scores_gemma":[0.999524,0.00003011697,0.0001676472,0.00001356077,0.000001364442,0.000003380684,0.0001306795,0.000002506283,0.0001268142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002060437,"threshold_uncertainty_score":0.004096866,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026563404","doi":"10.1128/aem.69.1.483-489.2003","title":"Changes in Microbial Community Composition and Function during a Polyaromatic Hydrocarbon Phytoremediation Field Trial","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":315,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; Biotechnology Research Institute","funders":"","keywords":"Rhizosphere; Phytoremediation; Mineralization (soil science); Bulk soil; Microbial population biology; Environmental chemistry; Soil microbiology; Biology; Microbial biodegradation; Soil contamination; Sphingomonas; Phenanthrene; Chemistry; Botany; Agronomy; Pseudomonas; Soil water; Microorganism; Bacteria; Ecology","authors":[{"name":"Steven D. Siciliano","is_ca":true},{"name":"James J. Germida","is_ca":true},{"name":"Kathy Banks","is_ca":false},{"name":"Charles W. Greer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005723349028446794,"gpt":0.1731320588906234,"spread":0.1674087098621766,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005461726,0.0003956201,0.0006521198,0.0002176268,0.000441295,0.0004819333,0.0002673859,0.0004590542,0.0006684329],"category_scores_gemma":[0.0007130023,0.0001822585,0.0002261101,0.0001766358,0.0002115053,0.0002962473,0.0002757956,0.0005239072,0.0001886479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004992225,"about_ca_system_score_gemma":0.0004645997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002695788,"about_ca_topic_score_gemma":0.005520171,"domain_scores_codex":[0.9996346,0.00006134178,0.00001930836,0.0001408125,0.00008022619,0.00006372511],"domain_scores_gemma":[0.9992582,0.0001311782,0.0001460031,0.0000551989,0.0002318628,0.0001775058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002372311,0.0009104536,0.006164895,0.00004312216,0.00003022134,0.00006807705,0.000137819,0.0001055103,0.9839279,0.00001185722,0.00004718263,0.00618073],"study_design_scores_gemma":[0.0002217735,0.03652364,0.1962029,0.00001819663,0.0001812429,0.0002603701,0.0004600836,0.001534961,0.7625059,0.00008559179,0.001952999,0.00005222798],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992909,0.00006139021,0.0003150007,0.0000156761,0.000004948733,0.00004792432,0.0001413274,0.00001024355,0.0001125025],"genre_scores_gemma":[0.9954021,0.0001034622,0.001651679,0.0000853798,0.000008873807,0.0001309642,0.000772925,0.00001017775,0.001834383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002695788,"threshold_uncertainty_score":0.005360186,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132954220","doi":"10.1128/aem.00246-08","title":"Microencapsulation of Bacteriophage Felix O1 into Chitosan-Alginate Microspheres for Oral Delivery","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":306,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; China Scholarship Council","keywords":"Bacteriophage; Incubation; Chitosan; Incubation period; Microsphere; Trehalose; Chemistry; Microbiology; In vitro; Pepsin; Bacteria; Chromatography; Biology; Biochemistry; Chemical engineering; Escherichia coli","authors":[{"name":"Yongsheng Ma","is_ca":true},{"name":"Jennifer C. Pacan","is_ca":true},{"name":"Qi Wang","is_ca":true},{"name":"Yongping Xu","is_ca":false},{"name":"Xiaoqing Huang","is_ca":true},{"name":"Anton Korenevsky","is_ca":true},{"name":"Parviz M. Sabour","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005669271400525169,"gpt":0.187417213754233,"spread":0.1817479423537078,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001661091,0.0004301276,0.0003776023,0.0001859133,0.0001308345,0.0002963914,0.0001969597,0.0004048713,0.0003501816],"category_scores_gemma":[0.0001590254,0.0001757876,0.0003630828,0.0001092277,0.0001618319,0.0002791968,0.0002497933,0.000308274,0.0001141867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000334899,"about_ca_system_score_gemma":0.000218717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001173887,"about_ca_topic_score_gemma":0.001738325,"domain_scores_codex":[0.9998729,0.00001016381,0.000009285801,0.00003149469,0.00004981044,0.00002630873],"domain_scores_gemma":[0.9999164,0.00001742157,0.0000316247,0.000005045126,0.00001511286,0.00001434459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003363839,0.00001084921,0.00007753823,0.00005347834,0.000004054185,0.00002701513,0.00001234538,0.00008014739,0.9967412,0.00001601093,0.00001083505,0.00293282],"study_design_scores_gemma":[0.00001157062,0.0004837683,0.001482124,0.000007264005,0.00002846944,0.000155375,0.00001403034,0.0007417894,0.9956926,0.000009576963,0.001364861,0.00000870189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828854,0.00472399,0.01128385,0.00007582656,0.0000512786,0.0000759806,0.00007236194,0.00009448133,0.0007368111],"genre_scores_gemma":[0.9812614,0.003058474,0.0131313,0.00004573387,0.00002937107,0.00005475382,0.00009028464,0.0000327212,0.002295999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001173887,"threshold_uncertainty_score":0.002429903,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117664027","doi":"10.1128/aem.01821-08","title":"Antimicrobial Resistance in <i>Escherichia coli</i> Isolates from Swine and Wild Small Mammals in the Proximity of Swine Farms and in Natural Environments in Ontario, Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":306,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Biology; Antimicrobial; Escherichia coli; Antibiotic resistance; Tetracycline; Livestock; Salmonella; Microbiology; Feces; Veterinary medicine; Bacteria; Antibiotics; Ecology; Gene","authors":[{"name":"Gosia K. Kozak","is_ca":true},{"name":"Patrick Boerlin","is_ca":true},{"name":"Nicol Janecko","is_ca":true},{"name":"Richard J. Reid‐Smith","is_ca":true},{"name":"Claire M. Jardine","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008516133624456653,"gpt":0.1776291473316527,"spread":0.1691130137071961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002792594,0.0002118231,0.0002568577,0.0009254933,0.001356809,0.0007517081,0.0004061162,0.0002415596,0.0006218813],"category_scores_gemma":[0.000652805,0.000207045,0.0002598921,0.001196167,0.0007102993,0.0001570243,0.0003640134,0.0002210363,0.000112141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004542876,"about_ca_system_score_gemma":0.003881512,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8858323,"about_ca_topic_score_gemma":0.9612986,"domain_scores_codex":[0.9994161,0.00004556977,0.00004017256,0.0001222804,0.0002331966,0.0001427191],"domain_scores_gemma":[0.999318,0.0000493171,0.0001801508,0.00001919131,0.0002812593,0.0001520572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009921036,0.00002867309,0.9862852,0.00003565009,0.00002599059,0.000470646,0.0009346588,0.00006290866,0.009498535,0.00002453843,0.0001409362,0.002393018],"study_design_scores_gemma":[0.000002112902,0.00004074187,0.9982919,0.000006023444,0.000006773852,0.0001719498,0.0008277253,0.00003859471,0.0003141454,0.000002946604,0.0002948828,0.00000228486],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988494,0.0001158515,0.00006626388,0.00002455838,0.000002659417,0.00001665136,0.0003197994,0.000001777074,0.0006030747],"genre_scores_gemma":[0.9980021,0.0002200869,0.0002863494,0.00005293418,0.000003300888,0.00001028445,0.0008199044,0.00000208395,0.0006028154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1141677,"threshold_uncertainty_score":0.2296801,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162046720","doi":"10.1128/aem.68.5.2148-2154.2002","title":"<i>Tri13</i> and <i>Tri7</i> Determine Deoxynivalenol- and Nivalenol-Producing Chemotypes of <i>Gibberella zeae</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":299,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Saskatchewan","keywords":"Chemotype; Trichothecene; Gibberella zeae; Gibberella; Biology; Vomitoxin; Gene; Mycotoxin; Microbiology; Fusarium; Genetics; Botany; Zearalenone","authors":[{"name":"Theresa Lee","is_ca":false},{"name":"You‐Kyoung Han","is_ca":false},{"name":"Kook‐Hyung Kim","is_ca":false},{"name":"Sung‐Hwan Yun","is_ca":false},{"name":"Yin‐Won Lee","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007194147209524751,"gpt":0.1373614112929061,"spread":0.1301672640833814,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007115898,0.0004886043,0.000226391,0.0003451495,0.0001235897,0.0002484806,0.0002061562,0.0002266277,0.000738412],"category_scores_gemma":[0.0001474779,0.0002786246,0.0003272756,0.000270432,0.0002180108,0.0001306254,0.0002766831,0.0003681654,0.0004395466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000428934,"about_ca_system_score_gemma":0.0002359976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002301859,"about_ca_topic_score_gemma":0.004062114,"domain_scores_codex":[0.9998217,0.0000176324,0.00001957567,0.00004175324,0.00004781675,0.00005154986],"domain_scores_gemma":[0.9997575,0.00002174198,0.0001120055,0.00002625431,0.00002428414,0.00005820665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003766438,0.000004442269,0.0003574604,0.000004391022,9.822477e-7,0.00002154601,0.0000101922,0.000009395239,0.9993455,0.00001539724,0.000005102562,0.0001879976],"study_design_scores_gemma":[0.00002030109,0.0001706356,0.06575065,0.000006352869,0.00002158963,0.0005077579,0.0001067571,0.0004514105,0.9312214,0.00004217031,0.001685979,0.0000150499],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973273,0.0001017735,0.0009478313,0.00002633069,0.000005759651,0.00002541052,0.0008365523,0.00004635264,0.0006826195],"genre_scores_gemma":[0.9901687,0.0001748006,0.002775122,0.00006353465,0.000004835921,0.00005096873,0.004500603,0.00007459344,0.00218687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002301859,"threshold_uncertainty_score":0.004576921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130468058","doi":"10.1128/aem.71.9.5182-5191.2005","title":"Phylogenetic Characterization of Virulence and Resistance Phenotypes of <i>Pseudomonas syringae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":297,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Virulence; Multilocus sequence typing; Microbiology; Pseudomonas syringae; Antibiotic resistance; Phylogenetics; Horizontal gene transfer; Genetics; Pathogen; Gene; Antibiotics; Genotype","authors":[{"name":"Michael S. Hwang","is_ca":true},{"name":"Robyn L. Morgan","is_ca":true},{"name":"Sara F. Sarkar","is_ca":true},{"name":"Pauline W. Wang","is_ca":true},{"name":"David S. Guttman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004361806912671298,"gpt":0.1456845647641066,"spread":0.1413227578514353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004206773,0.0002813825,0.0002995238,0.001176201,0.0003074472,0.0003961554,0.0002338406,0.0002428366,0.0004723974],"category_scores_gemma":[0.0008154243,0.0001517227,0.0002681485,0.0006902418,0.0002245904,0.000255337,0.0004053048,0.0004594913,0.0002177748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001813579,"about_ca_system_score_gemma":0.0001712088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001347374,"about_ca_topic_score_gemma":0.001043117,"domain_scores_codex":[0.9995449,0.00008220227,0.00005113761,0.0001459756,0.00008384036,0.00009185336],"domain_scores_gemma":[0.9991277,0.0001774383,0.0003212986,0.00008221922,0.00014647,0.0001447699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002922183,0.0001365606,0.1795839,0.00007219852,0.00006562575,0.0002029973,0.0004634669,0.0003262497,0.8113908,0.0001158514,0.00006704377,0.007283167],"study_design_scores_gemma":[0.00001548257,0.0006212429,0.9583528,0.00001844716,0.00008317154,0.002283249,0.0007619812,0.00185388,0.0344683,0.0001295333,0.001386716,0.00002513596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987803,0.0001019327,0.0005437416,0.00002270988,0.000001832261,0.000008892654,0.0002338749,0.00000669111,0.0003000457],"genre_scores_gemma":[0.9977563,0.00008724879,0.0009426402,0.00002071588,0.000004212849,0.00001050026,0.001040529,0.000009261285,0.000128749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001347374,"threshold_uncertainty_score":0.00267905,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1870558638","doi":"10.1128/aem.01248-15","title":"Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":282,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; University of Waterloo","funders":"","keywords":"Recombineering; CRISPR; Cas9; Biology; Genome editing; Genetics; Plasmid; Homologous recombination; Escherichia coli; Gene; DNA","authors":[{"name":"Michael E. Pyne","is_ca":true},{"name":"Murray Moo‐Young","is_ca":true},{"name":"Duane A. Chung","is_ca":true},{"name":"C. Perry Chou","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005467233457581778,"gpt":0.1992563040222078,"spread":0.193789070564626,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003913096,0.0004449075,0.0003875493,0.0002600657,0.0002448133,0.0006113756,0.000437888,0.0004770233,0.0006141973],"category_scores_gemma":[0.0003960525,0.0002594228,0.0003484353,0.0002184528,0.0003759762,0.0002061155,0.0005010045,0.0009750103,0.0006055378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003460757,"about_ca_system_score_gemma":0.0004386489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001059206,"about_ca_topic_score_gemma":0.001359754,"domain_scores_codex":[0.9994797,0.00008266922,0.0000603532,0.000117807,0.0001942557,0.00006525221],"domain_scores_gemma":[0.9997532,0.00005300379,0.00006411783,0.00006189931,0.00003006579,0.00003771084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002323061,0.00001434709,0.0001056025,0.00002327001,0.000003583165,0.00006053301,0.00001111717,0.0001833074,0.9976992,0.0002316823,0.0000237467,0.001620398],"study_design_scores_gemma":[0.000003795285,0.00007059835,0.000494166,0.000003591138,0.00000771321,0.0001635902,0.00001146698,0.001219591,0.9958444,0.00005598083,0.002117466,0.000007660568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8079019,0.0007892037,0.1857482,0.0002246323,0.00008585318,0.000218306,0.0006060647,0.001029709,0.003396288],"genre_scores_gemma":[0.8902121,0.0006128366,0.1042751,0.0001012655,0.00000687247,0.00008175839,0.0006922271,0.0001303441,0.003887468],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001059206,"threshold_uncertainty_score":0.002510965,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163125517","doi":"10.1128/aem.71.11.6986-6997.2005","title":"Comparison of Microbial Community Compositions of Two Subglacial Environments Reveals a Possible Role for Microbes in Chemical Weathering Processes","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":279,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Alberta","funders":"Jet Propulsion Laboratory","keywords":"Glacier; Betaproteobacteria; Microbial population biology; Population; Geology; Biology; 16S ribosomal RNA; Paleontology; Bacteria","authors":[{"name":"Mark Skidmore","is_ca":false},{"name":"Suzanne P. Anderson","is_ca":false},{"name":"Martin Sharp","is_ca":true},{"name":"Julia M. Foght","is_ca":true},{"name":"Brian Lanoil","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01242402660485962,"gpt":0.2678328976943352,"spread":0.2554088710894755,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000178315,0.0003219555,0.0002573583,0.0007652091,0.0003758073,0.0005174579,0.0001201153,0.0003542599,0.0003801794],"category_scores_gemma":[0.000318119,0.0001467441,0.0001625033,0.000367879,0.0002650177,0.000273026,0.0003396243,0.0001785355,0.00008778281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002347566,"about_ca_system_score_gemma":0.000239026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003071177,"about_ca_topic_score_gemma":0.005166001,"domain_scores_codex":[0.9998739,0.00001460871,0.000008014416,0.00004071322,0.00002479182,0.00003799413],"domain_scores_gemma":[0.9998147,0.00003685022,0.00004716146,0.0000118428,0.00003377624,0.00005572601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003131452,0.00007761672,0.2063205,0.00006038896,0.000049167,0.0001096699,0.0006844189,0.0001304914,0.7837887,0.00005096398,0.00002139961,0.008393593],"study_design_scores_gemma":[0.000007225615,0.0003339553,0.9801189,0.000005736744,0.0000316476,0.0001813441,0.0006497772,0.0003423672,0.017998,0.00006710168,0.0002577923,0.000006278124],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999624,0.0001001494,0.0001339687,0.000006719261,7.567903e-7,0.000002725338,0.00004634252,0.000003390406,0.00008192906],"genre_scores_gemma":[0.9988386,0.0001059329,0.0006110044,0.0000138933,0.000002912361,0.00000660558,0.0002826119,0.00000165406,0.0001368591],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003071177,"threshold_uncertainty_score":0.006106615,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038871965","doi":"10.1128/aem.72.5.3085-3095.2006","title":"Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":278,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Université Laval","funders":"","keywords":"Arctic; Oceanography; Canada Basin; Ecology; Biology; Halocline; Biodiversity; Water column; Arctic ecology; Mesopelagic zone; Pelagic zone; Geology","authors":[{"name":"Connie Lovejoy","is_ca":true},{"name":"Ramón Massana","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003908924242617744,"gpt":0.153010859837631,"spread":0.1491019355950133,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002070278,0.0001887991,0.0001787842,0.001324651,0.0005292027,0.0005393423,0.00009529525,0.0001805534,0.000249285],"category_scores_gemma":[0.0003577899,0.0001430495,0.0001246914,0.0006642991,0.0002253877,0.0001741905,0.000253083,0.0001394765,0.0001038966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003363747,"about_ca_system_score_gemma":0.0002645507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01887359,"about_ca_topic_score_gemma":0.03451069,"domain_scores_codex":[0.9998192,0.00002458059,0.00001218497,0.00004566369,0.00004188678,0.00005658008],"domain_scores_gemma":[0.9997365,0.00003972787,0.00006632817,0.00001187839,0.00007537659,0.00007021028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004558514,0.00004604436,0.880123,0.00004065757,0.00007497153,0.0002030252,0.001141776,0.0002335023,0.1042996,0.0000704514,0.00004906354,0.01326202],"study_design_scores_gemma":[0.000002193144,0.00005900117,0.9978698,0.000004060185,0.00001137038,0.0001470385,0.0002738138,0.0001349762,0.001226237,0.00001449926,0.0002543032,0.000002685421],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996063,0.0001490464,0.00004102379,0.000003083861,5.265956e-7,7.638509e-7,0.00006816734,6.505497e-7,0.0001304518],"genre_scores_gemma":[0.9988773,0.0002814029,0.0002271762,0.000007778421,0.000003905968,0.000002337406,0.0004309706,0.000001189334,0.0001678804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01887359,"threshold_uncertainty_score":0.0375275,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063754943","doi":"10.1128/aem.69.8.4396-4402.2003","title":"<i>Rhizobium leguminosarum</i> Biovar viciae 1-Aminocyclopropane-1-Carboxylate Deaminase Promotes Nodulation of Pea Plants","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":275,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizobium leguminosarum; Pisum; Biology; Sativum; Ethylene; Rhizobiaceae; Mutant; Rhizobium; Rhizobia; Nitrogen fixation; Microbiology; Biochemistry; Gene; Botany; Symbiosis; Bacteria; Genetics","authors":[{"name":"Wenbo Ma","is_ca":true},{"name":"Frédérique C. Guinel","is_ca":true},{"name":"Bernard R. Glick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00537285993411022,"gpt":0.1543679495053163,"spread":0.1489950895712061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000130972,0.0003949732,0.0002009505,0.0001665463,0.00008639981,0.0002317657,0.0001511468,0.0001386244,0.0006722714],"category_scores_gemma":[0.0001332589,0.0001026522,0.0001568262,0.00008026814,0.00009237514,0.0001142549,0.000204958,0.0002634377,0.0003205295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002974135,"about_ca_system_score_gemma":0.0001319549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00146626,"about_ca_topic_score_gemma":0.001976394,"domain_scores_codex":[0.9998661,0.00003013794,0.00001079029,0.00002468845,0.00002918491,0.00003897043],"domain_scores_gemma":[0.9998736,0.00002515325,0.00003455246,0.00001469708,0.00001348623,0.00003847154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002041847,0.000008184044,0.0001457357,0.000007058397,0.000001219578,0.00001125577,0.000003175746,0.000009588871,0.9995828,0.000008584168,0.000006652312,0.0001952934],"study_design_scores_gemma":[0.00001778648,0.0004192705,0.01945638,0.000008702732,0.00002132746,0.0004207688,0.00004161855,0.00122749,0.9762195,0.00003541882,0.002126677,0.000005132222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972703,0.000460621,0.0007644581,0.00003997224,0.000007495749,0.00001003247,0.0001304808,0.00008883575,0.001227856],"genre_scores_gemma":[0.9969466,0.0001559609,0.000884211,0.000025422,0.000003231631,0.000007148182,0.0005444682,0.00002821106,0.001404751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00146626,"threshold_uncertainty_score":0.002915502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2096403945","doi":"10.1128/aem.02677-10","title":"The Swarming Motility of Pseudomonas aeruginosa Is Blocked by Cranberry Proanthocyanidins and Other Tannin-Containing Materials","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":274,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Cranberry Institute; Yale University","keywords":"Swarming motility; Swarming (honey bee); Bacteria; Rhamnolipid; Biofilm; Motility; Pseudomonas aeruginosa; Microbiology; Flagellum; Tannin; Pilus; Biology; Proanthocyanidin; Hydrolyzable Tannin; Polyphenol; Chemistry; Food science; Biochemistry; Escherichia coli; Quorum sensing; Cell biology","authors":[{"name":"C O'May","is_ca":true},{"name":"Nathalie Tufenkji","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007652079301097257,"gpt":0.1819408263281456,"spread":0.1742887470270484,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001069525,0.0003882624,0.0002966548,0.0001438029,0.0001147412,0.0001979272,0.0001865617,0.0002667542,0.0005966375],"category_scores_gemma":[0.0002066458,0.0001633528,0.0002541024,0.00009762785,0.0002028343,0.0001669733,0.0002087925,0.0004365463,0.0001593121],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001567933,"about_ca_system_score_gemma":0.0002382605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00119008,"about_ca_topic_score_gemma":0.001223609,"domain_scores_codex":[0.9998515,0.00002841635,0.00001533018,0.00002066724,0.00004666906,0.00003730855],"domain_scores_gemma":[0.9998348,0.00003713417,0.00005434472,0.00001893245,0.00001674693,0.00003800369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000859271,0.0000242584,0.00008301704,0.00002146517,0.000003201381,0.00002536776,0.000006814993,0.00002016254,0.9993648,0.00001123377,0.000005417507,0.0003483056],"study_design_scores_gemma":[0.00001270095,0.0005376743,0.004769899,0.000004815268,0.000009595621,0.0001087023,0.00001565193,0.0004407174,0.993508,0.000009865807,0.000579148,0.00000336706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986262,0.0005083976,0.0004089523,0.00003797872,0.000007353676,0.00001233731,0.00004981874,0.00002056082,0.0003283343],"genre_scores_gemma":[0.9976019,0.000422869,0.0008518423,0.00003122379,0.000004760821,0.00001936953,0.0001490866,0.00001004509,0.0009087903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00119008,"threshold_uncertainty_score":0.002366304,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154360269","doi":"10.1128/aem.66.6.2491-2501.2000","title":"Isolation and Characterization of Strains CVO and FWKO B, Two Novel Nitrate-Reducing, Sulfide-Oxidizing Bacteria Isolated from Oil Field Brine","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":267,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Calgary","funders":"","keywords":"Sulfur; Thiosulfate; Sulfide; Hydrogen sulfide; Nitrate; Nitrite; Sulfate; Chemistry; Inorganic chemistry; Sulfur cycle; Energy source; Tetrathionate; Sulfate-reducing bacteria; Organic chemistry; Coal","authors":[{"name":"D. Gevertz","is_ca":false},{"name":"Anita J. Telang","is_ca":true},{"name":"Gerrit Voordouw","is_ca":true},{"name":"G. E. Jenneman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004179148612785177,"gpt":0.1820621091342003,"spread":0.1778829605214151,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000174165,0.0006801601,0.000484905,0.0007610773,0.000354532,0.0007659675,0.0003704399,0.0005352665,0.0002806687],"category_scores_gemma":[0.0008938581,0.0002564168,0.0003057769,0.0006831032,0.0003425727,0.0004057362,0.0006959341,0.0004253873,0.0002572742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003175969,"about_ca_system_score_gemma":0.0005734871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008621415,"about_ca_topic_score_gemma":0.01047944,"domain_scores_codex":[0.9995269,0.00002888807,0.00006236378,0.0001455016,0.0001541121,0.00008242655],"domain_scores_gemma":[0.9994065,0.00007465047,0.0001422889,0.00005049466,0.0001989597,0.0001272393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001246945,0.00008321126,0.01884108,0.0000823506,0.00001023545,0.0001597226,0.0001559033,0.00007675261,0.9770373,0.0000370031,0.00005499509,0.003336682],"study_design_scores_gemma":[0.0001116981,0.001293832,0.651045,0.0001357276,0.0001255894,0.0044914,0.002651445,0.001683762,0.3261794,0.0001515611,0.01206821,0.00006242864],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973603,0.0002539429,0.0008605095,0.00005411673,0.00002312036,0.00006025923,0.0007502942,0.000008186915,0.0006292656],"genre_scores_gemma":[0.9797277,0.001120806,0.008232862,0.0001638714,0.0000306874,0.0001999121,0.007924805,0.00003337936,0.002565961],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008621415,"threshold_uncertainty_score":0.01714247,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130479858","doi":"10.1128/aem.00068-13","title":"Mountain Pine Beetles Colonizing Historical and Naïve Host Trees Are Associated with a Bacterial Community Highly Enriched in Genes Contributing to Terpene Metabolism","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":264,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Alberta","funders":"University of Wisconsin-Madison; U.S. Department of Agriculture","keywords":"Dendroctonus; Mountain pine beetle; Biology; Bark beetle; Pinus contorta; Host (biology); Ecology; Terpene; Insect; Herbivore; Bark (sound)","authors":[{"name":"Aaron S. Adams","is_ca":false},{"name":"Frank O. Aylward","is_ca":false},{"name":"Sandye M. Adams","is_ca":false},{"name":"Nadir Erbilgin","is_ca":true},{"name":"Brian H. Aukema","is_ca":false},{"name":"Cameron R. Currie","is_ca":false},{"name":"Garret Suen","is_ca":false},{"name":"Kenneth F. Raffa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004960381497740754,"gpt":0.1637885676073392,"spread":0.1588281861095985,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005238089,0.0002551433,0.0001754986,0.0004867577,0.0004054027,0.000543074,0.0001039189,0.0002688768,0.0005355472],"category_scores_gemma":[0.0001082921,0.0001080783,0.0001773955,0.0002980065,0.0001780147,0.0002145587,0.0003443543,0.0001822597,0.0001700304],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009235541,"about_ca_system_score_gemma":0.0001521373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002592994,"about_ca_topic_score_gemma":0.005046286,"domain_scores_codex":[0.9998677,0.00000797409,0.000008876546,0.00005222068,0.00002963211,0.00003362918],"domain_scores_gemma":[0.9999006,0.00001204762,0.00003757305,0.000006886244,0.00001816354,0.00002482851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008683814,0.00005315446,0.07295112,0.00009680752,0.00002466141,0.0001422544,0.0004336964,0.0000381181,0.9201506,0.00003482961,0.00003503806,0.005952751],"study_design_scores_gemma":[0.000004258443,0.0002231845,0.9490336,0.00001593667,0.00003991008,0.0007147203,0.001042626,0.0003321911,0.04710023,0.00005131539,0.00143123,0.00001069741],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980507,0.0004310347,0.0003676372,0.00002030637,0.000004358445,0.00001001086,0.0005616454,0.000008947699,0.0005452797],"genre_scores_gemma":[0.995564,0.0006032704,0.001392271,0.00005832909,0.00001278609,0.0000171086,0.001466355,0.000004831031,0.0008810706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002592994,"threshold_uncertainty_score":0.005155802,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117426427","doi":"10.1128/aem.67.3.1335-1342.2001","title":"Habitat Association in Two Genetic Groups of the Insect-Pathogenic Fungus<i>Metarhizium anisopliae</i>: Uncovering Cryptic Species?","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":264,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Trent University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Metarhizium anisopliae; Species complex; Pathogenic fungus; Population; Insect; Metarhizium; Host (biology); Ecology; Habitat; Zoology; Population genetics; Entomology; Fungus; Biological pest control; Genetics; Botany; Phylogenetic tree; Gene","authors":[{"name":"Michael Bidochka","is_ca":true},{"name":"Andrena M. Kamp","is_ca":true},{"name":"Thomas Michael Lavender","is_ca":true},{"name":"J.N. Amritha De Croos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004832352946960238,"gpt":0.1594125363547125,"spread":0.1545801834077523,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000123402,0.0001668635,0.0002635374,0.0006538529,0.0004859459,0.0004103927,0.0002196087,0.0002301066,0.0006738748],"category_scores_gemma":[0.0002838877,0.0001204641,0.000157172,0.0004414258,0.0004582013,0.0001263156,0.0003920311,0.0002717252,0.0001179856],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000885672,"about_ca_system_score_gemma":0.0006294487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03793523,"about_ca_topic_score_gemma":0.1023528,"domain_scores_codex":[0.9997821,0.00001598902,0.00001405087,0.00009132386,0.00004352754,0.00005294148],"domain_scores_gemma":[0.9996459,0.00002901416,0.0001401221,0.00002956695,0.00007371938,0.00008152663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003251206,0.0000629059,0.6037246,0.0000600774,0.00007659668,0.0002290555,0.001487919,0.00009745872,0.3806485,0.0001963006,0.0000865457,0.01300498],"study_design_scores_gemma":[0.000003968059,0.0000349227,0.9975992,0.000002982217,0.00001188598,0.0001744594,0.0003681188,0.0001537547,0.001416826,0.00002939544,0.0002000915,0.000004399045],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993825,0.00007358618,0.0002091096,0.000008976786,9.519026e-7,0.000006832392,0.00006792841,0.000003623493,0.0002464336],"genre_scores_gemma":[0.9992703,0.00003250668,0.0003836749,0.00001026279,8.442259e-7,0.00000302258,0.0001510771,0.0000019712,0.0001464127],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03793523,"threshold_uncertainty_score":0.07542884,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2012445035","doi":"10.1128/aem.01451-14","title":"Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":261,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Canadian Institutes of Health Research","keywords":"Amplicon; Pooling; Biology; Amplicon sequencing; Metagenomics; Illumina dye sequencing; 16S ribosomal RNA; Massive parallel sequencing; Computational biology; Genetics; DNA sequencing; Deep sequencing; Polymerase chain reaction; Gene; Genome; Computer science; Artificial intelligence","authors":[{"name":"Katherine M. Kennedy","is_ca":true},{"name":"Michael Hall","is_ca":true},{"name":"Michael D. J. Lynch","is_ca":true},{"name":"Gabriel Moreno‐Hagelsieb","is_ca":true},{"name":"Josh D. Neufeld","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01909809877181859,"gpt":0.2235709644622311,"spread":0.2044728656904125,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.02835854,0.00185392,0.001447094,0.002132094,0.001196731,0.002302874,0.001192685,0.001653251,0.0008370716],"category_scores_gemma":[0.05863761,0.001249527,0.001287772,0.002091369,0.001599522,0.001037656,0.001774054,0.001198736,0.0007101183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001028066,"about_ca_system_score_gemma":0.001221402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003199101,"about_ca_topic_score_gemma":0.005302748,"domain_scores_codex":[0.9605832,0.0145921,0.00446588,0.006888426,0.01219038,0.001279934],"domain_scores_gemma":[0.9610912,0.02056184,0.005255106,0.004427933,0.008264014,0.0003998913],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001340574,0.0003227789,0.1462545,0.001115253,0.001148815,0.0002840945,0.001919088,0.00703466,0.7903472,0.00125916,0.00066766,0.04830619],"study_design_scores_gemma":[0.00005132099,0.001052288,0.1180664,0.0001676119,0.0005367692,0.0006543101,0.0004069191,0.02662141,0.842962,0.002067362,0.007234845,0.000178665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6942575,0.003739328,0.2944238,0.000322569,0.0004130295,0.0008963463,0.001619368,0.001267793,0.003060191],"genre_scores_gemma":[0.7328788,0.001550696,0.2567834,0.0008416991,0.00008648203,0.001341964,0.003669987,0.00110565,0.001741259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9716415,"threshold_uncertainty_score":0.1499761,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099586826","doi":"10.1128/aem.69.1.275-284.2003","title":"Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":260,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Science Council","keywords":"Biodegradation; Phenanthrene; Environmental chemistry; Enrichment culture; Chemistry; Pyrene; Polycyclic aromatic hydrocarbon; Biology; Organic chemistry; Bacteria","authors":[{"name":"Mikael Eriksson","is_ca":true},{"name":"Erik Södersten","is_ca":true},{"name":"Zhongtang Yu","is_ca":true},{"name":"Gunnel Dalhammar","is_ca":false},{"name":"William W. Mohn","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003927279768828506,"gpt":0.1814784252354655,"spread":0.177551145466637,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002326775,0.0005866904,0.00051699,0.0001706811,0.0002718878,0.0005220671,0.0002258701,0.0002253209,0.0002391947],"category_scores_gemma":[0.0003460902,0.0001999166,0.0003042354,0.0002408993,0.0002566815,0.0002460142,0.0003401599,0.0002748734,0.0003569795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004426611,"about_ca_system_score_gemma":0.0005500648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00858137,"about_ca_topic_score_gemma":0.008204574,"domain_scores_codex":[0.9997067,0.00005179597,0.00002857157,0.00006962921,0.00008436391,0.00005883774],"domain_scores_gemma":[0.9997976,0.00004290048,0.0000410561,0.00001553727,0.00006203503,0.00004095951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001170633,0.00002843648,0.001840074,0.00004757421,0.000007831749,0.00002894562,0.00007464785,0.0001757844,0.9963861,0.00001287143,0.00001255862,0.001268084],"study_design_scores_gemma":[0.00001681188,0.0008575686,0.04665982,0.00002830134,0.00007606499,0.0003874876,0.0003248283,0.001876403,0.9484064,0.00008785572,0.001247704,0.00003069818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979055,0.0003697437,0.0007895026,0.00002615848,0.000008506886,0.00001800092,0.0003388331,0.00001467638,0.000528963],"genre_scores_gemma":[0.9883034,0.001149513,0.006291244,0.00003472713,0.00001778583,0.00005994442,0.001975171,0.00002232538,0.002145905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00858137,"threshold_uncertainty_score":0.01706284,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1966390029","doi":"10.1128/aem.02517-05","title":"Biodiversity and Classification of Lactococcal Phages","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":256,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Lactococcus lactis; Lactococcus; Biology; Bacteria; Bacteriophage; Microbiology; Metagenomics; Genome; Siphoviridae; Computational biology; Genetics; Gene; Escherichia coli; Lactic acid","authors":[{"name":"Hélène Deveau","is_ca":true},{"name":"Simon J. Labrie","is_ca":true},{"name":"Marie‐Christine Chopin","is_ca":false},{"name":"Sylvain Moineau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004789283944480025,"gpt":0.1725174089619271,"spread":0.167728125017447,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000679441,0.0002506621,0.0004420021,0.004840666,0.0007009843,0.001491054,0.0003946413,0.0003194067,0.001042373],"category_scores_gemma":[0.001246052,0.00008186067,0.0002718084,0.002752084,0.0004024422,0.000908452,0.0007393989,0.0003721071,0.0003461627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005387862,"about_ca_system_score_gemma":0.0005092162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001757646,"about_ca_topic_score_gemma":0.001303895,"domain_scores_codex":[0.9993933,0.0001072551,0.00008837766,0.0001442205,0.0001475336,0.0001193082],"domain_scores_gemma":[0.9990675,0.0002164629,0.000190019,0.00007669427,0.0003170031,0.0001323792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0008441996,0.0001270255,0.1698922,0.001975386,0.0001357701,0.001111973,0.004174618,0.000996405,0.2373429,0.00529369,0.0009450703,0.5771607],"study_design_scores_gemma":[0.00003002732,0.001119013,0.7907376,0.0007865999,0.000165352,0.007086914,0.003948527,0.00239901,0.02660684,0.007171089,0.1598089,0.0001401987],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9245954,0.04994407,0.01061632,0.0003919598,0.0001032209,0.0001042111,0.0009351319,0.0001384817,0.01317135],"genre_scores_gemma":[0.9529296,0.02111195,0.01971935,0.0001606666,0.00009025287,0.00006333408,0.002374512,0.00003162616,0.003518683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004840666,"threshold_uncertainty_score":0.003909171,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}