{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":3,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":3,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"39d06730ed4d","filters":{"venue":"BMC Methods"}},"results":[{"id":"W4399435643","doi":"10.1186/s44330-024-00005-4","title":"Mini-MEndR: a miniaturized 96-well predictive assay to evaluate muscle stem cell-mediated repair","year":2024,"lang":"en","type":"article","venue":"BMC Methods","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto; Canada First Research Excellence Fund; Canada Research Chairs; Ontario Institute for Regenerative Medicine; Connaught Fund; Stem Cell Network","keywords":"Skeletal muscle; Stem cell; In vivo; Tissue engineering; Cell biology; Biomedical engineering; Myosin; Endogeny; Cell; High-content screening; Regeneration (biology); Chemistry; Biology; Biochemistry; Anatomy; Medicine; Biotechnology","authors":[{"name":"Nitya Gulati","is_ca":true},{"name":"Sadegh Davoudi","is_ca":true},{"name":"Bin Xu","is_ca":true},{"name":"Saifedine T. Rjaibi","is_ca":true},{"name":"Erik Jacques","is_ca":true},{"name":"Justin Pham","is_ca":true},{"name":"Amir Fard","is_ca":true},{"name":"Alison P. McGuigan","is_ca":true},{"name":"Penney M. Gilbert","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02661069530972013,"gpt":0.3488849249559856,"spread":0.3222742296462654,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003278008,0.002282966,0.001509481,0.002721538,0.0005206686,0.001751853,0.002300673,0.001354844,0.006548385],"category_scores_gemma":[0.001886812,0.001196808,0.001474458,0.001101034,0.0006988318,0.000912229,0.001159488,0.002239172,0.006043786],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007375695,"about_ca_system_score_gemma":0.0006743852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000554305,"about_ca_topic_score_gemma":0.001207361,"domain_scores_codex":[0.99435,0.001106033,0.0005484734,0.001051639,0.002640006,0.0003038567],"domain_scores_gemma":[0.9978274,0.0007498171,0.0003558268,0.000357255,0.0005217666,0.0001880283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001403445,0.0001347072,0.000625855,0.000284866,0.00003474047,0.00004893877,0.00006445808,0.0004551649,0.9880139,0.0004395414,0.001150078,0.008607309],"study_design_scores_gemma":[0.0000196442,0.000291591,0.001636866,0.00003215171,0.00004273541,0.0002019466,0.0000334236,0.006624623,0.9835714,0.0001852299,0.007310403,0.0000499415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1256407,0.004642862,0.8392415,0.0005488435,0.0006009375,0.001858602,0.007545415,0.01285067,0.007070543],"genre_scores_gemma":[0.1753759,0.003304405,0.7876744,0.0003710331,0.0001883599,0.006023933,0.01063356,0.0009293231,0.01549906],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006548385,"threshold_uncertainty_score":0.0219065,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408083924","doi":"10.1186/s44330-025-00024-9","title":"RLB-MALBAC: a rapid, non-transposase method for synthesizing unbiased sequencing libraries from low amount of genomic DNA for Nanopore sequencing","year":2025,"lang":"en","type":"article","venue":"BMC Methods","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"B.C. Women's Hospital & Health Centre; University of British Columbia","funders":"","keywords":"Nanopore sequencing; Transposase; Nanopore; DNA sequencing; Computational biology; genomic DNA; DNA; Biology; Genetics; Genome; Transposable element; Gene; Nanotechnology; Materials science","authors":[{"name":"Vijay Gadkar","is_ca":true},{"name":"David A. Goldfarb","is_ca":true},{"name":"Jonathan B. Gubbay","is_ca":true},{"name":"Peter Tilley","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03073983893249262,"gpt":0.356379587053081,"spread":0.3256397481205884,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001168729,0.001230815,0.0007568016,0.001227869,0.0004086771,0.0008972458,0.001423361,0.0008886932,0.003002704],"category_scores_gemma":[0.001108431,0.0008514199,0.0006703266,0.0005359197,0.0005979557,0.0005931821,0.0009503224,0.001605402,0.004369767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003982286,"about_ca_system_score_gemma":0.0006619008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002844387,"about_ca_topic_score_gemma":0.0009845875,"domain_scores_codex":[0.9981002,0.0003991362,0.0001646465,0.0004131939,0.00078843,0.0001344228],"domain_scores_gemma":[0.9992894,0.0001904386,0.0001719507,0.000161502,0.0001117036,0.00007494981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003526704,0.00003449229,0.00007748549,0.0001251227,0.000009626771,0.0000573482,0.00002653339,0.0001127331,0.9900665,0.0002841568,0.0003718277,0.008798739],"study_design_scores_gemma":[0.00000900587,0.0001223385,0.0003093469,0.00001484112,0.0000127829,0.0002664127,0.00001080797,0.001506739,0.9892737,0.0001090664,0.008344166,0.00002077743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.05778234,0.001861169,0.9258984,0.0003777809,0.0002380625,0.00101049,0.001695125,0.008211038,0.00292558],"genre_scores_gemma":[0.1736535,0.002216949,0.8050976,0.0004572452,0.00005344774,0.001446071,0.005148645,0.001175661,0.01075089],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003002704,"threshold_uncertainty_score":0.01004505,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4415339602","doi":"10.1186/s44330-025-00044-5","title":"Enhanced virus reconstitution of human herpesvirus 6A (HHV-6A)","year":2025,"lang":"en","type":"article","venue":"BMC Methods","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Freie Universität Berlin","keywords":"Lytic cycle; Nucleofection; Virus; Viral replication; Cell culture; DNA replication; Transfection; Mutant","authors":[{"name":"Jana Reich","is_ca":false},{"name":"Dilan Serdar","is_ca":false},{"name":"Jenny M. Ospina","is_ca":false},{"name":"Yingnan Cheng","is_ca":false},{"name":"A Weissmann","is_ca":false},{"name":"Roosmarijn van der Woude","is_ca":false},{"name":"Georg Beythien","is_ca":false},{"name":"Melissa L. Whyte","is_ca":false},{"name":"Annie Gravel","is_ca":false},{"name":"Thomas Hennig","is_ca":false},{"name":"Louis Flamand","is_ca":true},{"name":"Amy W. Hudson","is_ca":false},{"name":"Benedikt B. Kaufer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08630584344262351,"gpt":0.4717389542136991,"spread":0.3854331107710756,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006184045,0.0007879013,0.0004558353,0.0004533931,0.0002537153,0.0006071664,0.0005353318,0.0005405103,0.001356747],"category_scores_gemma":[0.0003268253,0.0002221855,0.0005413515,0.0002775907,0.000322344,0.000367293,0.0006435104,0.0009962479,0.00103088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004696762,"about_ca_system_score_gemma":0.0002612974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003395471,"about_ca_topic_score_gemma":0.0003578584,"domain_scores_codex":[0.9992648,0.0001747247,0.00009485005,0.0001613066,0.0002248628,0.00007948656],"domain_scores_gemma":[0.9997917,0.00004429458,0.00004908732,0.00003989123,0.00004666956,0.00002830749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003639503,0.0000219592,0.0000705787,0.00005778662,0.000005225604,0.0000168955,0.00001265108,0.00008973499,0.9982749,0.0001085217,0.00004558012,0.0012598],"study_design_scores_gemma":[0.00000538351,0.0001250108,0.0003124679,0.000008194918,0.00001080292,0.00006710665,0.000006700347,0.0005016733,0.9958031,0.00003224505,0.003122844,0.000004584158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8880984,0.006582246,0.09634596,0.0002231789,0.0003375961,0.0006684486,0.002786969,0.0007772745,0.00417997],"genre_scores_gemma":[0.8945089,0.003145605,0.08562183,0.000150704,0.00006838913,0.0006278829,0.007298958,0.0002861031,0.0082916],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001356747,"threshold_uncertainty_score":0.004538774,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}