{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":52,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":52,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"c1ebe29d3089","filters":{"venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression"}},"results":[{"id":"W2041638332","doi":"10.1016/s0167-4781(02)00457-8","title":"Regulation of transcription elongation by phosphorylation","year":2002,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":186,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute","keywords":"RNA polymerase II; Phosphorylation; Transcription (linguistics); Cell biology; Transcription factor; Transcription factor II F; Kinase; RNA polymerase II holoenzyme; Phosphatase; Transcription factor II D; Transcription factor II E; Biology; Transcriptional regulation; Chemistry; RNA; Promoter; RNA polymerase; Genetics; Gene; Gene expression","authors":[{"name":"Michael S. Kobor","is_ca":false},{"name":"Jack Greenblatt","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01542874400510501,"gpt":0.2776791089450932,"spread":0.2622503649399882,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001189262,0.0004562143,0.0006921419,0.0001295948,0.0001405872,0.0000532244,0.0002292396,0.0006379065,0.00003037604],"category_scores_gemma":[0.00002786216,0.0003672351,0.0002782089,0.0001979982,0.0001046704,0.000024106,0.00009045094,0.0002599479,0.000001920966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002646438,"about_ca_system_score_gemma":0.0000692016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001357873,"about_ca_topic_score_gemma":0.000001683488,"domain_scores_codex":[0.9979351,0.000223535,0.0005485419,0.0006831349,0.0003260734,0.0002835789],"domain_scores_gemma":[0.9987817,0.00002100911,0.000500293,0.0004802236,0.00009124593,0.0001254623],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005356438,0.0000301571,2.145174e-7,0.001142686,0.00006353123,2.013664e-7,0.0000423591,0.000001300099,0.8984614,0.000005112028,0.002164175,0.09803528],"study_design_scores_gemma":[0.0003000865,0.0002068027,0.00004996955,0.001134325,0.0001599587,0.000008711444,0.000006859174,0.00004320618,0.9332814,0.00004789237,0.06439955,0.0003612048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.3812867,0.617451,0.0001677801,0.00003359061,0.000107245,0.0005516147,0.0003473995,0.00001648709,0.00003823107],"genre_scores_gemma":[0.1765911,0.8175632,0.0004274058,0.0000194225,0.000244001,0.00002379843,0.004695188,0.00005677513,0.0003791085],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.2046956,"threshold_uncertainty_score":0.999878,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1966670480","doi":"10.1016/s0167-4781(01)00338-4","title":"Differential expression of adipose- and heart-type fatty acid binding proteins in hibernating ground squirrels","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Adipose Tissue and Metabolism","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Torpor; Fatty acid-binding protein; Hibernation (computing); Biology; Brown adipose tissue; Ground squirrel; Adipose tissue; Internal medicine; Endocrinology; Complementary DNA; Biochemistry; Gene; Thermoregulation; Medicine","authors":[{"name":"Dustin S. Hittel","is_ca":true},{"name":"Kenneth B. Storey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01556080127919506,"gpt":0.2698483821179731,"spread":0.2542875808387781,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008253507,0.0003801829,0.0006527298,0.0002327049,0.0001566494,0.00004526714,0.0001279114,0.0002774117,0.00006309731],"category_scores_gemma":[0.00005040656,0.0002851952,0.00008749447,0.0002796157,0.0001487266,0.0002456258,0.0002320958,0.0003832777,0.000001659725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002244401,"about_ca_system_score_gemma":0.00005163564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006105512,"about_ca_topic_score_gemma":0.000004068597,"domain_scores_codex":[0.998069,0.0001086474,0.0004558462,0.0006018773,0.0003635959,0.0004010337],"domain_scores_gemma":[0.9990225,0.00004284788,0.0002527615,0.0003836936,0.00006796906,0.0002302113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005889898,0.0001083063,0.0004977258,0.0001367972,0.00003162513,0.00001490719,0.001194212,5.190968e-7,0.9956527,0.00001884185,0.00007184411,0.001683583],"study_design_scores_gemma":[0.001700961,0.0002842148,0.07253279,0.0006258129,0.0001045608,0.00007839813,0.0001011826,0.00003595852,0.9238906,0.0001900104,0.0001854436,0.000270086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997825,0.0008659846,0.00004158988,0.0002793895,0.0002314788,0.0006089585,0.00003930681,0.00004606945,0.00006219088],"genre_scores_gemma":[0.9946903,0.0006769877,0.003849197,0.0001017231,0.0004257031,0.00001204274,0.0001250929,0.00004901975,0.00006995621],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07203506,"threshold_uncertainty_score":0.99996,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4252598982","doi":"10.1016/s0167-4781(02)00455-4","title":"Transcription attenuation","year":2002,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; York University; National Institutes of Health; National Science Foundation","keywords":"Antitermination; Operon; Transcription (linguistics); Biology; Terminator (solar); RNA; Ribosome; Transfer RNA; Gene; Cell biology; Genetics; RNA polymerase; Escherichia coli","authors":[{"name":"Paul Gollnick","is_ca":false},{"name":"Paul Babitzke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01854671856115813,"gpt":0.2665789084897065,"spread":0.2480321899285484,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007738969,0.0007299603,0.0009287274,0.0001559075,0.0001737413,0.000101437,0.0004139775,0.001548482,0.00003516266],"category_scores_gemma":[0.00001748265,0.0005644519,0.0003767066,0.0001927015,0.0001665803,0.00001024014,0.0002592821,0.0004148388,0.000009388015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002054635,"about_ca_system_score_gemma":0.00007719921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000048144,"about_ca_topic_score_gemma":0.000002853715,"domain_scores_codex":[0.9975688,0.0001911823,0.0005534979,0.001074076,0.0002013192,0.0004110933],"domain_scores_gemma":[0.9986143,0.00001186973,0.0004262371,0.0007447593,0.0000613331,0.0001415774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002755782,0.00003321852,5.396064e-8,0.0006751015,0.00008915064,0.000001251404,0.00002817284,1.595495e-7,0.8605639,0.000006989779,0.00114421,0.1374303],"study_design_scores_gemma":[0.0002222163,0.0002149642,0.00001172055,0.0005767525,0.0002640517,0.00003836956,0.000004064155,0.000002229081,0.6017076,0.00004674868,0.3964229,0.0004882936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.2353774,0.7625363,0.0000336107,0.0001498547,0.0005646489,0.0006620198,0.0005697878,0.0000492342,0.00005711015],"genre_scores_gemma":[0.06336001,0.9313378,0.0007791939,0.0001092263,0.0010169,0.00003913952,0.003090481,0.0000972639,0.0001699821],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.3952787,"threshold_uncertainty_score":0.9997477,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W404933495","doi":"10.1016/j.bbaexp.2005.02.009","title":"Cloning and expression of hypoxia-inducible factor 1α from the hibernating ground squirrel, Spermophilus tridecemlineatus","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"High Altitude and Hypoxia","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Torpor; Ground squirrel; Biology; Hibernation (computing); Brown adipose tissue; Internal medicine; Thermogenesis; Endocrinology; Gene expression; Adipose tissue; PRDM16; Gene; Molecular biology; Genetics; Thermoregulation","authors":[{"name":"Pier Morin","is_ca":true},{"name":"Kenneth B. Storey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01114451737140754,"gpt":0.2444642811444375,"spread":0.23331976377303,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009370522,0.0004030404,0.0003706229,0.00005466028,0.0003137039,0.00009787348,0.0003385775,0.000324982,0.00002390628],"category_scores_gemma":[0.00005996663,0.0002739865,0.0001240779,0.0001042969,0.0001788912,0.00004017568,0.000449481,0.000277238,0.000001723541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001241264,"about_ca_system_score_gemma":0.00005870002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009152542,"about_ca_topic_score_gemma":0.00001720646,"domain_scores_codex":[0.9980705,0.0001244907,0.0004124131,0.0007512619,0.0002842343,0.0003570793],"domain_scores_gemma":[0.9987622,0.00007412114,0.0003128535,0.0006174977,0.00006868787,0.0001645961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002155434,0.00004369648,0.00006265328,0.00001993083,0.00005356669,0.000001459425,0.0006218211,0.000009337902,0.996653,0.000009831688,0.000793309,0.001515806],"study_design_scores_gemma":[0.000923258,0.0001774557,0.01020591,0.0001087817,0.00005482619,0.00001260559,0.0001023003,0.00005141636,0.9859544,0.0001467796,0.001920407,0.0003418301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963197,0.002199487,0.00006129376,0.0005202725,0.000186619,0.0002542681,0.0003720473,0.00002288888,0.0000633852],"genre_scores_gemma":[0.9928476,0.0009470909,0.003743448,0.0003391959,0.00159337,0.000008770868,0.0004114598,0.00004857642,0.00006051206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01069862,"threshold_uncertainty_score":0.9999712,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046218160","doi":"10.1016/j.bbaexp.2003.10.008","title":"Up-regulation of fatty acid-binding proteins during hibernation in the little brown bat, Myotis lucifugus","year":2003,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Adipose Tissue and Metabolism","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Myotis lucifugus; Hibernation (computing); Brown adipose tissue; Biology; Fatty acid-binding protein; Internal medicine; Adipose tissue; Endocrinology; Western blot; Northern blot; Torpor; Skeletal muscle; Gene expression; Biochemistry; Gene; Zoology","authors":[{"name":"Sean Eddy","is_ca":true},{"name":"Kenneth B. Storey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01096941983531743,"gpt":0.248950185943064,"spread":0.2379807661077466,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001477583,0.0002473444,0.0003424629,0.0001617236,0.0001457695,0.00003154763,0.0001283469,0.0001792369,0.00004964111],"category_scores_gemma":[0.00006685977,0.0001662637,0.0000871394,0.0002989153,0.00007902548,0.000194692,0.00005159396,0.0002544777,0.000002101884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002859589,"about_ca_system_score_gemma":0.0000506343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000326764,"about_ca_topic_score_gemma":0.000004637889,"domain_scores_codex":[0.9984999,0.0001535428,0.0003414123,0.0003787958,0.0003679494,0.0002584032],"domain_scores_gemma":[0.9991953,0.0000314726,0.0002334687,0.0003936121,0.00006176737,0.0000843316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001462168,0.00005742106,0.0001079345,0.0001064546,0.00002641029,0.000002870996,0.00207749,0.000002819431,0.9962831,0.0002082428,0.00007406825,0.000906948],"study_design_scores_gemma":[0.001154943,0.00008611952,0.105069,0.0001701195,0.00007097504,0.00003766196,0.0001519242,0.0000162347,0.8923748,0.0004451891,0.0002653433,0.0001577374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980161,0.0004024961,0.00004777547,0.0004133223,0.0001860635,0.0006502832,0.00003536815,0.00002701425,0.0002216315],"genre_scores_gemma":[0.9971626,0.000183088,0.002032267,0.0000797527,0.0001885657,0.00002002288,0.0001153258,0.00002842211,0.0001899135],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.104961,"threshold_uncertainty_score":0.6780038,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093593644","doi":"10.1016/s0167-4781(99)00241-9","title":"Cloning and characterization of additional members of the G protein-coupled receptor family","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Receptor Mechanisms and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre for Addiction and Mental Health; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Pseudogene; Biology; Complementary DNA; Open reading frame; cDNA library; Genetics; Molecular biology; Subfamily; Sequence analysis; genomic DNA; G protein-coupled receptor; Peptide sequence; Receptor; Gene; Genome","authors":[{"name":"Dennis K. Lee","is_ca":true},{"name":"Kevin R. Lynch","is_ca":false},{"name":"Tuan Nguyen","is_ca":true},{"name":"Dong‐Soon Im","is_ca":false},{"name":"Regina Cheng","is_ca":true},{"name":"Victor Saldivia","is_ca":true},{"name":"Yang Liu","is_ca":true},{"name":"Ivy S.C Liu","is_ca":true},{"name":"Henry H. Heng","is_ca":false},{"name":"Philip Seeman","is_ca":true},{"name":"Susan R. George","is_ca":true},{"name":"Brian F. O’Dowd","is_ca":true},{"name":"Adriano Marchese","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004209705856648312,"gpt":0.1962655759658683,"spread":0.19205587010922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005253595,0.000173622,0.0001852189,0.00002631983,0.0001107543,0.00001779465,0.0001286943,0.0001586487,0.0003620746],"category_scores_gemma":[0.00001162663,0.0001211096,0.00007422404,0.00007943407,0.0001087202,0.00001313977,0.00008609633,0.00008650435,2.56194e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003592279,"about_ca_system_score_gemma":0.00003846416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007716217,"about_ca_topic_score_gemma":5.277257e-7,"domain_scores_codex":[0.9990973,0.00006665711,0.0002342507,0.0003032703,0.0001639823,0.0001344941],"domain_scores_gemma":[0.9994633,0.000008896469,0.0002026633,0.0002185402,0.00005466104,0.00005196999],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001546313,0.00001867528,0.000002591175,0.0000319244,0.00002683872,6.329998e-8,0.0001255479,0.000003983946,0.9989195,0.00002189089,0.0001397797,0.0005544985],"study_design_scores_gemma":[0.0003005943,0.0001299524,0.001979912,0.0001135543,0.00001744107,0.000002545097,0.00002636702,0.00006340497,0.9964672,0.0001074123,0.0006495368,0.0001420529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987851,0.00007187696,0.00003184822,0.00007582143,0.00006596333,0.0002364984,0.0006898796,0.000005818397,0.00003718578],"genre_scores_gemma":[0.9972182,0.0002177858,0.00125057,0.00008490053,0.000161513,0.00001225586,0.0009345105,0.00001918722,0.0001010641],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002452348,"threshold_uncertainty_score":0.4938706,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070885472","doi":"10.1016/s0167-4781(00)00278-5","title":"Genomic organization of a human 5β-reductase and its pseudogene and substrate selectivity of the expressed enzyme","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":54,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; Université Laval","funders":"Medical Research Council","keywords":"Pseudogene; Biology; Intron; Gene; Reductase; Molecular biology; Complementary DNA; Genetics; Enzyme; Biochemistry","authors":[{"name":"Annie Charbonneau","is_ca":true},{"name":"Van-Luu The","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03625721302176637,"gpt":0.3384614510543071,"spread":0.3022042380325407,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001690871,0.0003010661,0.0003785354,0.00008775648,0.0003149154,0.00002319219,0.0002211755,0.0002535302,0.00006581117],"category_scores_gemma":[0.00002692733,0.0002246675,0.00005467087,0.0002871099,0.0002571041,0.0001061645,0.0002695099,0.000328852,3.893438e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000961157,"about_ca_system_score_gemma":0.00006112736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001305089,"about_ca_topic_score_gemma":0.000002175044,"domain_scores_codex":[0.9984297,0.0003523963,0.0003547736,0.0004366661,0.0001553981,0.0002710888],"domain_scores_gemma":[0.9990371,0.00007120022,0.0003540021,0.0002358165,0.0001286847,0.0001731937],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001602241,0.0001082439,0.0007443296,0.00007927381,0.00008682019,0.00000157035,0.001095101,0.00002326949,0.9970589,0.00007978186,0.0001363432,0.0004260909],"study_design_scores_gemma":[0.001192424,0.00006396919,0.03797883,0.00002490538,0.0002152731,0.00002758044,0.00003617406,0.0002060861,0.9593726,0.0004849889,0.0001713055,0.0002258481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973264,0.001389075,0.000005272563,0.0002844385,0.0002153977,0.0003720199,0.0003452135,0.0000207612,0.00004143506],"genre_scores_gemma":[0.9966895,0.00269417,0.0001047312,0.0002075532,0.0001834073,0.000006168065,0.00005166055,0.00003266519,0.00003012685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03768633,"threshold_uncertainty_score":0.9161676,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084842166","doi":"10.1016/j.bbaexp.2005.07.001","title":"Cloning of GLUT3 cDNA from Atlantic cod (Gadus morhua) and expression of GLUT1 and GLUT3 in response to hypoxia","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Physiological and biochemical adaptations","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"GLUT1; GLUT3; Biology; Gadus; Glucose transporter; Complementary DNA; Atlantic cod; Molecular biology; Endocrinology; Gene; Fishery; Genetics; Insulin; Fish <Actinopterygii>","authors":[{"name":"Jennifer R. Hall","is_ca":true},{"name":"Robert C. Richards","is_ca":true},{"name":"Tyson J. MacCormack","is_ca":true},{"name":"K. Vanya Ewart","is_ca":true},{"name":"William R. Driedzic","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007735060596143904,"gpt":0.2208004717326688,"spread":0.2130654111365249,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009333709,0.0002613285,0.0003778315,0.00005955937,0.00009719611,0.00002116663,0.0001932634,0.0001741381,0.00005380268],"category_scores_gemma":[0.00006781059,0.0001842789,0.00004924732,0.0002103544,0.0002874198,0.0001664571,0.0005260151,0.000173412,0.000002472259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002271968,"about_ca_system_score_gemma":0.00001079365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001558712,"about_ca_topic_score_gemma":0.00001562223,"domain_scores_codex":[0.9984114,0.0001335406,0.0003646489,0.0005779972,0.0002540643,0.0002583443],"domain_scores_gemma":[0.9991726,0.0001800135,0.0001782838,0.0002636202,0.00001243209,0.0001930492],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00109478,0.00008032507,0.0003398747,0.00001623886,0.000006374807,0.000001181571,0.0007086005,0.00003678621,0.9967145,0.00000393194,0.0001613942,0.0008360008],"study_design_scores_gemma":[0.0004499588,0.0001521078,0.236537,0.0001202949,0.00001424192,0.00000212085,0.00005754094,0.0001371149,0.7615963,0.0006942516,0.00005600315,0.0001830286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988556,0.000141572,0.00001516153,0.0005417732,0.00002555699,0.000220933,0.0001562991,0.00001704454,0.00002605204],"genre_scores_gemma":[0.9927694,0.0001494426,0.006784122,0.0001448939,0.0000592441,0.000007331537,0.00005848599,0.00001338845,0.00001372864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2361971,"threshold_uncertainty_score":0.7514676,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2056059870","doi":"10.1016/j.bbaexp.2003.10.016","title":"Chromatin remodeling and the maintenance of genome integrity","year":2003,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôtel-Dieu de Québec; Université Laval","funders":"","keywords":"Chromatin; Chromatin remodeling; DNA damage; Genome instability; Biology; DNA repair; Cell biology; Histone; Histone-modifying enzymes; Nucleotide excision repair; Genetics; DNA","authors":[{"name":"Stéphane Allard","is_ca":true},{"name":"Jean‐Yves Masson","is_ca":true},{"name":"Jacques Côté","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0150222830008299,"gpt":0.2708626773552384,"spread":0.2558403943544085,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002953689,0.0006200237,0.00119636,0.00007178855,0.0001491658,0.00005489762,0.0004381012,0.0006263173,0.00000726147],"category_scores_gemma":[0.00007428086,0.0003650029,0.0003595011,0.0001352017,0.000349094,0.000009570638,0.0004966325,0.0004788509,7.87902e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001647846,"about_ca_system_score_gemma":0.0001453248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009380802,"about_ca_topic_score_gemma":0.000001427072,"domain_scores_codex":[0.9975657,0.0004186223,0.0006113768,0.0008532997,0.0002200127,0.0003309498],"domain_scores_gemma":[0.9982461,0.00004719607,0.000641681,0.0008688127,0.00008198289,0.0001142527],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008021006,0.0000175722,3.151419e-8,0.001566595,0.0001072976,8.875338e-7,0.00009272063,7.389617e-7,0.9807904,0.00009199358,0.0001626362,0.01708894],"study_design_scores_gemma":[0.0008657639,0.0001724961,0.00000532908,0.002322407,0.0004598429,0.000118798,0.00004215169,0.00003361627,0.9125536,0.00091052,0.08185479,0.0006606544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.2246282,0.7736992,0.0001726928,0.00005549057,0.0001835137,0.0008185326,0.000324745,0.00001890849,0.00009877323],"genre_scores_gemma":[0.08527873,0.9096702,0.00405555,0.0001167901,0.0002359083,0.00003287001,0.0004351139,0.00007516729,0.00009970735],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.1393494,"threshold_uncertainty_score":0.9998802,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965848732","doi":"10.1016/s0167-4781(00)00102-0","title":"cDNA sequence and tissue-specific expression of a basic liver-type fatty acid binding protein in adult zebrafish (Danio rerio)","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Zebrafish; Complementary DNA; Biology; Molecular biology; Danio; Rapid amplification of cDNA ends; Peptide sequence; Biochemistry; Gene; Molecular cloning","authors":[{"name":"Eileen M. Denovan‐Wright","is_ca":true},{"name":"Marianne Pierce","is_ca":true},{"name":"Mukesh Kumar Sharma","is_ca":true},{"name":"Jonathan M. Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009796119328510274,"gpt":0.2334660132624822,"spread":0.2236698939339719,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008912313,0.0004483713,0.0004110317,0.0001274738,0.000157565,0.00006366779,0.0002913872,0.0004570938,0.00007759034],"category_scores_gemma":[0.00003569134,0.0003758022,0.00006648058,0.0002822161,0.0002247643,0.00005264996,0.0002369082,0.0003179454,0.000002847526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002522675,"about_ca_system_score_gemma":0.00006876731,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001874772,"about_ca_topic_score_gemma":0.000004491237,"domain_scores_codex":[0.9978124,0.0001900856,0.0004117713,0.0009152892,0.000260571,0.0004099034],"domain_scores_gemma":[0.9989737,0.0000133017,0.0002223805,0.0005196084,0.00009036887,0.0001806819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006857231,0.00006654761,0.00005929449,0.00008510035,0.00001828505,0.000005160525,0.0003797167,0.000001960244,0.9957577,0.000003798372,0.000237995,0.00269873],"study_design_scores_gemma":[0.0008254689,0.0004063487,0.0009450527,0.0003396997,0.00001240038,0.00002257595,0.00007044439,0.00001235588,0.9964024,0.00004227127,0.0004821791,0.0004388326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984629,0.0005851744,0.000009562169,0.000098871,0.00009255459,0.0005230223,0.0001488657,0.00002926891,0.00004974155],"genre_scores_gemma":[0.9942532,0.00207784,0.002949576,0.00007691572,0.0001981635,0.00002609758,0.0003004494,0.00005547204,0.0000622641],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004209717,"threshold_uncertainty_score":0.9998694,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048974179","doi":"10.1016/s0167-4781(02)00497-9","title":"Ku antigen, an origin-specific binding protein that associates with replication proteins, is required for mammalian DNA replication","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Replication factor C; Origin recognition complex; Biology; Control of chromosome duplication; DNA replication; Eukaryotic DNA replication; Molecular biology; Ter protein; S phase; Replication protein A; Origin of replication; DNA polymerase II; Pre-replication complex; Immunoprecipitation; DnaA; DNA replication factor CDT1; Ku80; DNA; DNA-binding protein; Biochemistry; Reverse transcriptase; Gene; Transcription factor; RNA","authors":[{"name":"Diamanto Matheos","is_ca":true},{"name":"Marcia T. Ruiz","is_ca":true},{"name":"Gerald B. Price","is_ca":true},{"name":"Maria Zannis‐Hadjopoulos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02392206355618339,"gpt":0.2573597253010821,"spread":0.2334376617448987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002036348,0.00043456,0.000306973,0.00009089728,0.0003682492,0.0001509957,0.0003639794,0.0003890404,0.00002032741],"category_scores_gemma":[0.00003438029,0.0003535229,0.0001133042,0.0001789694,0.00009638922,0.00006326756,0.0001259698,0.0001449394,0.000003353192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003795812,"about_ca_system_score_gemma":0.00003536858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007040698,"about_ca_topic_score_gemma":0.000003312748,"domain_scores_codex":[0.9972571,0.0001158013,0.0003265849,0.001561584,0.0003036842,0.0004352327],"domain_scores_gemma":[0.997506,0.00001054629,0.0004669329,0.001698385,0.0001416764,0.000176438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002772672,0.00008511419,0.00002605009,0.00004826916,0.00004824251,7.625859e-7,0.0002617009,4.981746e-7,0.9958814,0.00006152164,0.001568937,0.001740253],"study_design_scores_gemma":[0.0007713945,0.0007719647,0.0005788633,0.00008882317,0.00003080404,0.0000133517,0.00006707486,0.00006909082,0.9917575,0.0003257866,0.005018369,0.0005069994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962143,0.0001844573,0.0004813891,0.0007583938,0.0000725364,0.00184018,0.0003092465,0.0000927828,0.00004674812],"genre_scores_gemma":[0.9810314,0.0002792307,0.01568335,0.0001766918,0.0003832887,0.0003028667,0.00150164,0.00009491193,0.0005466265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01520197,"threshold_uncertainty_score":0.9998917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2035514409","doi":"10.1016/s0167-4781(02)00603-6","title":"Freeze-induced expression of a novel gene, fr47, in the liver of the freeze-tolerant wood frog, Rana sylvatica","year":2003,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Physiological and biochemical adaptations","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Biology; Gene expression; Gene; Western blot; Hyla; Northern blot; Rana; Signal transduction; Crucifer; Molecular biology; Cell biology; Biochemistry; Botany; Ecology; Anatomy","authors":[{"name":"James Dayre McNally","is_ca":true},{"name":"Christopher M. Sturgeon","is_ca":true},{"name":"Kenneth B. Storey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01658524929675846,"gpt":0.2201121955540443,"spread":0.2035269462572858,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001291712,0.000296681,0.000347669,0.00003330395,0.0001812037,0.00002051898,0.0006146093,0.000203321,0.0001121639],"category_scores_gemma":[0.00007492307,0.0001444094,0.0001589598,0.0004036434,0.0003484305,0.0001250044,0.0003267955,0.0003065655,0.000002059564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002029038,"about_ca_system_score_gemma":0.00002225302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001776636,"about_ca_topic_score_gemma":0.00001907544,"domain_scores_codex":[0.9980922,0.0002249821,0.0004272617,0.0004880452,0.0004688901,0.000298612],"domain_scores_gemma":[0.9988788,0.0001405975,0.0002929052,0.0005794366,0.00002078693,0.00008746287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006607005,0.0002773626,0.00005688256,0.00001930732,0.000009224734,6.423755e-7,0.0009052912,0.00003843793,0.9981553,0.00005900823,0.0002340175,0.0001784406],"study_design_scores_gemma":[0.0006058538,0.0000980916,0.051592,0.00008985381,0.00002803909,0.000004055984,0.0001296941,0.0001302856,0.9454748,0.001603673,0.00004564436,0.0001979931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987205,0.00008341955,0.00004612951,0.0002633535,0.0000711684,0.0003998095,0.0001323331,0.00001198052,0.0002713299],"genre_scores_gemma":[0.9966806,0.00007587947,0.002802175,0.000323411,0.00004755663,0.0000178659,0.0000267454,0.00001392682,0.0000118191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0526805,"threshold_uncertainty_score":0.5888844,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018122189","doi":"10.1016/s0167-4781(02)00562-6","title":"Characterization of a novel human breast cancer associated gene (BCA3) encoding an alternatively spliced proline-rich protein","year":2003,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre; Health Sciences Centre","funders":"Canadian Institutes of Health Research","keywords":"Complementary DNA; Biology; Breast cancer; Suppression subtractive hybridization; Expressed sequence tag; Gene; RNA splicing; Molecular biology; Alternative splicing; Gene expression; Sequence analysis; Prostate cancer; Cancer research; Messenger RNA; cDNA library; Cancer; Genetics; RNA","authors":[{"name":"A. Richard Kitching","is_ca":true},{"name":"Haoxia Li","is_ca":true},{"name":"Michael Wong","is_ca":true},{"name":"Shankary Kanaganayakam","is_ca":true},{"name":"Harriette Kahn","is_ca":true},{"name":"Arun Seth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01781905337894224,"gpt":0.2850301219307331,"spread":0.2672110685517908,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001025832,0.0003140301,0.0004727713,0.0001887751,0.0001871715,0.00004447124,0.0001052581,0.000187183,0.0001035178],"category_scores_gemma":[0.00002666438,0.000246982,0.0001119795,0.0003582182,0.00008334251,0.000230286,0.00004973892,0.0002194946,5.78393e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005331696,"about_ca_system_score_gemma":0.00009063735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004571932,"about_ca_topic_score_gemma":0.000006510734,"domain_scores_codex":[0.9983227,0.00011391,0.0004135868,0.0005201658,0.0003610125,0.0002686773],"domain_scores_gemma":[0.9987989,0.000009284405,0.0004827222,0.000289551,0.000229964,0.0001895949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001411338,0.0003441061,0.0000981509,0.00007090712,0.0001092101,0.000002692599,0.0005114516,0.000002019612,0.9985687,0.0000429152,0.00001450544,0.00009419025],"study_design_scores_gemma":[0.001725063,0.0001454792,0.03214065,0.00058258,0.0001158966,0.00001905744,0.00004078664,0.0002238284,0.9646897,0.00004394844,0.000009764317,0.0002631906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980839,0.00001023985,0.00009363346,0.0003896295,0.00002890469,0.0004825805,0.0007768431,0.00005719337,0.00007710687],"genre_scores_gemma":[0.9974369,0.00003353235,0.0008288331,0.0002477664,0.0002238179,0.0000359633,0.001018847,0.00004035095,0.0001339249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03387896,"threshold_uncertainty_score":0.9999983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992572718","doi":"10.1016/j.bbaexp.2006.05.001","title":"The role of Sp1 and Sp3 in the constitutive DPYD gene expression","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"DPYD; Dihydropyrimidine dehydrogenase; Chromatin immunoprecipitation; Sp1 transcription factor; Activator (genetics); Promoter; Molecular biology; Transcription (linguistics); Biology; Gene; Chemistry; Gene expression; Genetics; Fluorouracil; Pharmacogenetics; Thymidylate synthase; Chemotherapy","authors":[{"name":"Xue Zhang","is_ca":false},{"name":"Lin Li","is_ca":true},{"name":"Jeanne Fourie","is_ca":false},{"name":"James Davie","is_ca":true},{"name":"Vincenzo Guarcello","is_ca":false},{"name":"Robert B. Diasio","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00346415336911605,"gpt":0.2179590055230829,"spread":0.2144948521539669,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001650197,0.0002244771,0.000179982,0.00004088176,0.0002359057,0.00005917379,0.0002164826,0.0001887514,0.000001941504],"category_scores_gemma":[0.00002730709,0.0001300361,0.00006057197,0.00009792065,0.0002862468,0.00001120667,0.0001788207,0.000138931,2.542253e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005249341,"about_ca_system_score_gemma":0.00004020037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004893577,"about_ca_topic_score_gemma":0.00002185113,"domain_scores_codex":[0.998751,0.0001675063,0.0002784777,0.0003910841,0.0001899629,0.0002219804],"domain_scores_gemma":[0.9992644,0.00005627736,0.0001888377,0.0003913621,0.0000525749,0.00004659681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001226273,0.00003131334,0.0002150321,0.000009739551,0.00001015417,6.76634e-7,0.0001942161,0.00001490099,0.998106,0.0001477411,0.000103747,0.001043828],"study_design_scores_gemma":[0.0003951076,0.0001248557,0.0134045,0.00003011691,0.00001873619,0.000004788837,0.0001512931,0.00002720456,0.9799405,0.004152311,0.001581658,0.0001689551],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946203,0.004327064,0.00006491008,0.0001823643,0.00007289491,0.0002626495,0.0000803134,0.000005590874,0.0003839339],"genre_scores_gemma":[0.9969237,0.001540981,0.001003235,0.00005854516,0.0002469982,0.00001236064,0.0001774081,0.0000160039,0.00002078545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01816555,"threshold_uncertainty_score":0.5302721,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114600333","doi":"10.1016/s0167-4781(03)00116-7","title":"The human kallikrein protein 5 (hK5) is enzymatically active, glycosylated and forms complexes with two protease inhibitors in ovarian cancer fluids","year":2003,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Kallikrein; Serine protease; Protease; Chymotrypsin; Biochemistry; Trypsin; Molecular biology; Glycosylation; Chemistry; Recombinant DNA; Enzyme; Serine Proteinase Inhibitors; Serine; Biology; Gene","authors":[{"name":"George M. Yousef","is_ca":true},{"name":"Carl Kapadia","is_ca":true},{"name":"Mary‐Ellen Polymeris","is_ca":true},{"name":"Carla A. Borgoño","is_ca":true},{"name":"Shirley Hutchinson","is_ca":true},{"name":"Gregory A. Wasney","is_ca":true},{"name":"Antoninus Soosaipillai","is_ca":true},{"name":"Eleftherios P. Diamandis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009280346198552867,"gpt":0.2632330518164517,"spread":0.2539527056178988,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001181353,0.0004155574,0.0004453005,0.0001083631,0.0004700374,0.0001167184,0.0001190796,0.0001674483,0.00004590473],"category_scores_gemma":[0.00003335779,0.0002402271,0.00007075117,0.0002888271,0.0002838552,0.0002126396,0.00007884608,0.0003155885,7.199574e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004818116,"about_ca_system_score_gemma":0.0001462216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002213128,"about_ca_topic_score_gemma":0.00008234241,"domain_scores_codex":[0.9981217,0.0001146108,0.0004089306,0.0005690411,0.0003569748,0.0004286793],"domain_scores_gemma":[0.9990369,0.00004863287,0.0002037466,0.0003855343,0.00008938344,0.0002357706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006179448,0.00007767419,0.0004517937,0.00009474935,0.0000690344,0.000006572118,0.001295512,0.000001282807,0.9954662,0.0006565053,0.0002068768,0.001055805],"study_design_scores_gemma":[0.002784821,0.0003312523,0.03448544,0.0005619188,0.00007502435,0.00002217541,0.0001451457,0.00007758342,0.9583098,0.002497219,0.0003752232,0.0003343809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964283,0.000471337,0.00001928962,0.001323506,0.0000435632,0.00147066,0.00006543611,0.00004684741,0.0001310687],"genre_scores_gemma":[0.9979103,0.0001129489,0.001130333,0.0002903407,0.0001426341,0.0001062602,0.00008348036,0.00005004516,0.000173699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03715644,"threshold_uncertainty_score":0.9796177,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025117502","doi":"10.1016/s0167-4781(00)00075-0","title":"Nucleotide sequence of cDNA clones coding for a brain-type fatty acid binding protein and its tissue-specific expression in adult zebrafish (Danio rerio)","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Zebrafish; Biology; Danio; Complementary DNA; Molecular biology; Coding region; Sequence analysis; Gene; Genetics","authors":[{"name":"Eileen M. Denovan‐Wright","is_ca":true},{"name":"Marianne Pierce","is_ca":true},{"name":"Jonathan Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01244263127908508,"gpt":0.2538750086941949,"spread":0.2414323774151099,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001131406,0.0004224194,0.0004192482,0.0001193388,0.0001977453,0.00006545271,0.0002641443,0.0003987147,0.00003096895],"category_scores_gemma":[0.00008207648,0.0003602444,0.00007415246,0.0002249875,0.0001362403,0.00005525163,0.0001830343,0.0002321509,0.000001151584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002257599,"about_ca_system_score_gemma":0.00005787202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005935349,"about_ca_topic_score_gemma":0.000002948568,"domain_scores_codex":[0.9979597,0.0001406169,0.000427164,0.0008623154,0.0001900966,0.000420045],"domain_scores_gemma":[0.9990811,0.00002806439,0.0002418547,0.0003745771,0.0001149981,0.000159366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009231944,0.00005070335,0.00002529559,0.0001399787,0.00002352965,0.000001634487,0.0003564596,0.0000034734,0.9969391,0.00001166,0.0003462259,0.001178807],"study_design_scores_gemma":[0.001053935,0.0004098146,0.0003410262,0.0003986172,0.00001219307,0.00001315549,0.00007923225,0.00003147228,0.9964428,0.00007092609,0.0007175117,0.0004293015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980152,0.0004147436,0.00003608807,0.0002723534,0.000109145,0.0008204058,0.0002822486,0.00002927139,0.00002050076],"genre_scores_gemma":[0.9944422,0.001034403,0.003640896,0.0001102509,0.0002246191,0.00004398423,0.0003793215,0.00006373418,0.00006065224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003604808,"threshold_uncertainty_score":0.999885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025991945","doi":"10.1016/j.bbaexp.2006.01.001","title":"Characterization of human Enah gene","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":30,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Gene; Phosphoprotein; Complementary DNA; Exon; Gene isoform; Molecular biology; Alternative splicing; Amino acid; Genetics; Peptide sequence","authors":[{"name":"Lorena Urbanelli","is_ca":false},{"name":"C Massini","is_ca":false},{"name":"Carla Emiliani","is_ca":false},{"name":"Antonio Orlacchio","is_ca":false},{"name":"Giorgio Bernardi","is_ca":false},{"name":"Aldo Orlacchio","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0141915133409859,"gpt":0.2628848091981464,"spread":0.2486932958571605,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005524483,0.0002544813,0.0003053483,0.0001287747,0.000307595,0.00003187847,0.0003038846,0.0002061832,0.00004843556],"category_scores_gemma":[0.00002558468,0.0001967348,0.0000792615,0.0002185864,0.0003850575,0.0001976968,0.0002160798,0.0002720151,0.000004425685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008378564,"about_ca_system_score_gemma":0.00003062201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001498279,"about_ca_topic_score_gemma":8.651199e-7,"domain_scores_codex":[0.9982907,0.0002752205,0.0003066034,0.0006187511,0.000181388,0.0003273337],"domain_scores_gemma":[0.9992034,0.00006849485,0.0002290177,0.0003835301,0.00004292711,0.00007264951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001210481,0.00007863822,0.0000186633,0.00002629837,0.000005035167,0.000002920491,0.00009869604,9.649071e-7,0.9992255,0.000228212,0.0001260039,0.00006802111],"study_design_scores_gemma":[0.0003585067,0.0002298531,0.0251314,0.00002194532,0.00001186275,0.0000136238,0.000002991127,0.00001281821,0.9724607,0.001507252,0.000054425,0.0001946145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989557,0.00001435598,0.000008583414,0.0001948777,0.0001486129,0.0002349372,0.0002185047,0.00005327008,0.0001711512],"genre_scores_gemma":[0.9987397,0.00008993708,0.00007319533,0.0003102874,0.000286411,0.000009896288,0.0003066879,0.0000261546,0.0001577433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02676479,"threshold_uncertainty_score":0.8022613,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078612336","doi":"10.1016/s0167-4781(01)00239-1","title":"Wheat mitochondria ccmB encodes the membrane domain of a putative ABC transporter involved in cytochrome c biogenesis","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"CancerCare Manitoba Foundation","keywords":"Biology; ATP-binding cassette transporter; Mitochondrion; Biogenesis; Biochemistry; Transmembrane domain; Cyclic nucleotide-binding domain; Organelle; Inner membrane; Mitochondrial DNA; Gene; Transporter; Peptide sequence","authors":[{"name":"S. Emmanuelle Faivre‐Nitschke","is_ca":false},{"name":"Patricia Nazoa","is_ca":false},{"name":"José M. Gualberto","is_ca":false},{"name":"Jean Michel Grienenberger","is_ca":false},{"name":"Géraldine Bonnard","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006635210398850488,"gpt":0.2298392797610936,"spread":0.2232040693622431,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001123483,0.0003647799,0.0003775042,0.00009165746,0.0001252266,0.00003089187,0.0003528545,0.0002696091,0.00001924909],"category_scores_gemma":[0.00001612603,0.0002421921,0.0001477644,0.0002355624,0.0002125396,0.00001942731,0.0001237907,0.0001500546,6.477127e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001085501,"about_ca_system_score_gemma":0.00007911162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005840365,"about_ca_topic_score_gemma":0.00005070275,"domain_scores_codex":[0.998312,0.0001189634,0.0003786,0.0006114551,0.0002273718,0.0003516427],"domain_scores_gemma":[0.999121,0.00002778527,0.0002000378,0.0004717369,0.00006590723,0.000113501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005283374,0.00008176285,0.00001278241,0.00005682336,0.0000546276,0.000005533877,0.0009416585,0.000007720506,0.9980367,0.00002544819,0.00003519913,0.0002133645],"study_design_scores_gemma":[0.0008999396,0.0002668945,0.001028354,0.00008409459,0.0000482623,0.00002436497,0.0003788541,0.00002165189,0.9950304,0.001588855,0.0003223857,0.0003059323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978731,0.0003585781,0.0004009445,0.0004551326,0.00009933945,0.0004233662,0.0003062691,0.00001394879,0.00006935056],"genre_scores_gemma":[0.9962708,0.001387496,0.001470018,0.0002759523,0.0001536682,0.00004268188,0.0003273485,0.00003805004,0.00003402005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00300633,"threshold_uncertainty_score":0.9876308,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971716339","doi":"10.1016/s0167-4781(99)00229-8","title":"Nucleotide sequence of a cDNA clone coding for an intestinal-type fatty acid binding protein and its tissue-specific expression in zebrafish (Danio rerio)","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Zebrafish; Biology; Complementary DNA; Molecular biology; Danio; genomic DNA; Restriction enzyme; Gene; Genetics","authors":[{"name":"Marianne Pierce","is_ca":true},{"name":"Yimin Wang","is_ca":true},{"name":"Eileen M. Denovan‐Wright","is_ca":true},{"name":"Jonathan Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01903069353230004,"gpt":0.2675127406785305,"spread":0.2484820471462305,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001342491,0.0004060171,0.000399792,0.0001198235,0.0001848878,0.00006835486,0.0002763973,0.0003385179,0.00002913952],"category_scores_gemma":[0.00006266645,0.0003501507,0.00005779564,0.0002253425,0.0001378155,0.00006895889,0.0001793186,0.000246901,8.977245e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000232811,"about_ca_system_score_gemma":0.00005945312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006873041,"about_ca_topic_score_gemma":0.000002391149,"domain_scores_codex":[0.9979961,0.000150182,0.000413469,0.0008669891,0.000174653,0.000398599],"domain_scores_gemma":[0.9990644,0.00002004195,0.0002348715,0.0003980474,0.00009745757,0.0001852204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009673158,0.00007072606,0.00002626529,0.0001083247,0.00001656185,0.000001596001,0.0003228821,0.000004488446,0.9966676,0.000005903485,0.0001203655,0.00168797],"study_design_scores_gemma":[0.0008704282,0.000743246,0.0003599458,0.0003912019,0.0000131822,0.00001989789,0.00007906773,0.00005595792,0.9965788,0.00007900095,0.0003926221,0.000416674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983196,0.0004489917,0.00005517313,0.00007904051,0.00008603084,0.0007657531,0.0001938123,0.00003111049,0.00002047985],"genre_scores_gemma":[0.9917488,0.0007132576,0.006705257,0.00004780784,0.0002077321,0.00004160502,0.0004394982,0.00006237179,0.00003368749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006650084,"threshold_uncertainty_score":0.999895,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001458654","doi":"10.1016/s0167-4781(00)00273-6","title":"The rainbow trout metallothionein-B gene promoter: contributions of distal promoter elements to metal and oxidant regulation","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Trace Elements in Health","field":"Nursing","cited_by":27,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Rainbow trout; Metallothionein; Biology; Gene; Promoter; Mutant; Molecular biology; Transfection; Cell biology; Genetics; Gene expression; Fish <Actinopterygii>","authors":[{"name":"Susan L.-A. Samson","is_ca":true},{"name":"Wendy J. Paramchuk","is_ca":true},{"name":"Lashitew Gedamu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009112812645135962,"gpt":0.2772780617199885,"spread":0.2681652490748525,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003039663,0.000367108,0.0004090038,0.000112915,0.0006179554,0.00011554,0.0002395321,0.0001555069,0.00001675299],"category_scores_gemma":[0.0000773095,0.0002469749,0.0001002507,0.0002446677,0.0001801747,0.0002439017,0.0002112608,0.0002407662,0.000001294869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006818864,"about_ca_system_score_gemma":0.00003369836,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003060029,"about_ca_topic_score_gemma":0.0000146513,"domain_scores_codex":[0.997506,0.0002757424,0.0006323977,0.0006105478,0.0004633215,0.000511954],"domain_scores_gemma":[0.9986435,0.0000906373,0.0003933436,0.0005273615,0.0001242658,0.0002208545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006623415,0.00009283809,0.00004758174,0.00004123979,0.00008072354,0.000001438032,0.001082184,0.000002698817,0.9933808,0.00007470804,0.0002232396,0.004310157],"study_design_scores_gemma":[0.001037854,0.0004619177,0.02479596,0.00008623517,0.000134513,0.00002787274,0.00007195462,0.0001401064,0.9708067,0.001082061,0.001084542,0.0002703074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932873,0.0002191359,0.0002276001,0.004097544,0.0003923651,0.001268021,0.0004349588,0.0000571301,0.00001591806],"genre_scores_gemma":[0.9941893,0.0001052887,0.004892849,0.0001811455,0.0002613243,0.00004053379,0.0002242395,0.00004384721,0.00006150367],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02474838,"threshold_uncertainty_score":0.9999983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1975903859","doi":"10.1016/s0167-4781(01)00283-4","title":"Human endothelin converting enzyme-2 (ECE2): characterization of mRNA species and chromosomal localization","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; St. Michael's Hospital; University of New Brunswick","funders":"Core Research for Evolutional Science and Technology; Kidney Foundation of Canada","keywords":"In situ hybridization; Amino acid; Messenger RNA; Biology; Open reading frame; Complementary DNA; Molecular biology; Fluorescence in situ hybridization; Gene; Exon; Peptide sequence; Enzyme; Genetics; Chromosome; Biochemistry","authors":[{"name":"Maria-Nieves Lorenzo","is_ca":true},{"name":"Rajal Y. Khan","is_ca":true},{"name":"Yang Wang","is_ca":true},{"name":"Sharon C. Tai","is_ca":true},{"name":"Gary C. Chan","is_ca":true},{"name":"Anthony H. Cheung","is_ca":true},{"name":"Philip A. Marsden","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01003234809555498,"gpt":0.2546589629494437,"spread":0.2446266148538888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006966911,0.0002233592,0.0002243891,0.00007864746,0.0001810868,0.0000497478,0.0001235861,0.0001887229,0.00003634484],"category_scores_gemma":[0.00002810456,0.0001942886,0.00005602702,0.0001197142,0.0001740941,0.00002342653,0.0002327073,0.0001143851,8.743426e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008115673,"about_ca_system_score_gemma":0.00003335407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001085924,"about_ca_topic_score_gemma":0.000005949209,"domain_scores_codex":[0.9987424,0.0001036044,0.0002717645,0.0004423757,0.0001998428,0.0002400323],"domain_scores_gemma":[0.9993562,0.00001247562,0.000151152,0.0002805116,0.00009358003,0.0001060884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001235211,0.00003180475,0.0002066883,0.00006305765,0.00002637624,0.00000192603,0.0002070848,0.000001718802,0.9984638,0.00001211457,0.0000372371,0.0008246705],"study_design_scores_gemma":[0.0004966106,0.0002701372,0.0161287,0.0000524697,0.00001901891,0.00002444196,0.00003498672,0.0001981349,0.9818999,0.00004094037,0.0006271871,0.0002075362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990436,0.0001828228,0.0001304205,0.00009590858,0.0000598312,0.0002463665,0.0001300394,0.00001634605,0.00009469701],"genre_scores_gemma":[0.9980751,0.0005108027,0.0001244246,0.00009357694,0.0003198427,0.000006822748,0.0006283,0.00003132936,0.0002097985],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01656397,"threshold_uncertainty_score":0.7922859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004650502","doi":"10.1016/s0167-4781(01)00171-3","title":"The genomic structure of SYCP3, a meiosis-specific gene encoding a protein of the chromosome core","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"","keywords":"Genetics; Biology; Meiosis; Gene; Exon; Genetic recombination; Recombination","authors":[{"name":"Roberto J. Botelho","is_ca":true},{"name":"Lisa DiNicolo","is_ca":true},{"name":"Nora Tsao","is_ca":true},{"name":"Angelo Karaiskakis","is_ca":true},{"name":"Madalena Tarsounas","is_ca":true},{"name":"Peter B. Møens","is_ca":true},{"name":"Ronald E. Pearlman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00900550291311414,"gpt":0.2230184994864889,"spread":0.2140129965733747,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001002169,0.0003772488,0.0003458543,0.00004802087,0.0003056367,0.00004270133,0.0006911641,0.0003036803,0.00001567974],"category_scores_gemma":[0.00003357237,0.0002211456,0.0002136088,0.0002083303,0.0003000104,0.00001311626,0.000541647,0.0002280083,4.460259e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002137401,"about_ca_system_score_gemma":0.0000923077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000099911,"about_ca_topic_score_gemma":0.000008087879,"domain_scores_codex":[0.9981278,0.0001432484,0.0004430718,0.0005976235,0.0003280711,0.0003602402],"domain_scores_gemma":[0.9982413,0.00002404414,0.0004881984,0.001043402,0.0001055349,0.00009748725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002696865,0.00003036215,0.0000178823,0.0000406476,0.00007478487,0.00000113489,0.0002451387,0.000009326891,0.9986305,0.0001024151,0.0002210844,0.0003570373],"study_design_scores_gemma":[0.0005100986,0.0002230501,0.001744007,0.00009314202,0.00004054988,0.00004127551,0.00007535958,0.00002219342,0.9950445,0.001057182,0.0008871563,0.0002614552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976108,0.0009777183,0.00003073689,0.0001891609,0.0002331826,0.0006389853,0.0002633985,0.00001620933,0.00003977977],"genre_scores_gemma":[0.9972353,0.0007247955,0.001383826,0.00008065587,0.0003296428,0.0000151576,0.0001025241,0.0000505311,0.00007756296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00358597,"threshold_uncertainty_score":0.9018056,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2087939104","doi":"10.1016/s0167-4781(01)00340-2","title":"Isolation of a genomic clone containing the promoter region of the human ATP binding cassette (ABC) transporter, ABCB6","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"National Cancer Institute; Medical Research Council; National Cancer Research Institute","keywords":"Molecular biology; ATP-binding cassette transporter; Gene; Biology; Luciferase; Promoter; genomic DNA; Complementary DNA; TATA box; Genetics; Gene expression; Transfection; Transporter","authors":[{"name":"H.-Pasha Emadi-Konjin","is_ca":true},{"name":"Hui Zhang","is_ca":true},{"name":"Vasuki Anandan","is_ca":true},{"name":"Daxi Sun","is_ca":false},{"name":"John D. Schuetz","is_ca":false},{"name":"Katryn N. Furuya","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01764916680838409,"gpt":0.2346871284823418,"spread":0.2170379616739577,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009101327,0.0002579034,0.0004119503,0.00007955251,0.0002593304,0.00001593909,0.0001990924,0.0001718363,0.00002979668],"category_scores_gemma":[0.000003895319,0.0001377652,0.000195373,0.0001711908,0.0001981725,0.00008846191,0.00003694234,0.0002720553,4.678633e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001979084,"about_ca_system_score_gemma":0.00002345635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001906327,"about_ca_topic_score_gemma":0.000005838451,"domain_scores_codex":[0.9986187,0.00006397667,0.0004430003,0.0003430284,0.0002976843,0.0002336378],"domain_scores_gemma":[0.9989656,0.00002271359,0.0003960789,0.0004875147,0.0000583199,0.00006974442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001941996,0.00005755284,0.0002260962,0.0001434777,0.00006253862,0.000005417774,0.004386969,0.000001902875,0.994549,0.00004805419,0.00008174018,0.0002430442],"study_design_scores_gemma":[0.001035933,0.0002082243,0.04191864,0.0004073626,0.000221238,0.0000295593,0.0001995587,0.00008284154,0.955495,0.0001698072,0.00007596845,0.0001558514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975203,0.0001891981,0.0001163739,0.001314525,0.00014448,0.0005486432,0.00005868257,0.00002464604,0.00008313968],"genre_scores_gemma":[0.9987684,0.0001430512,0.0005316964,0.0001504759,0.0001640481,0.000007531887,0.00007234676,0.00003503444,0.0001273721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04169254,"threshold_uncertainty_score":0.56179,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988585960","doi":"10.1016/s0167-4781(00)00261-x","title":"Tumor cell splice variants of the transcription factor TEF-1 induced by SV40 T-antigen transformation","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Exon; Biology; RNA splicing; Enhancer; Molecular biology; Transcription (linguistics); Alternative splicing; Gene isoform; Gene; Carcinogenesis; Transcription factor; Genetics; RNA","authors":[{"name":"Philip C. Zuzarte","is_ca":true},{"name":"Iain K. Farrance","is_ca":false},{"name":"Paul Simpson","is_ca":false},{"name":"Alan G. Wildeman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008681779240009164,"gpt":0.2430136990776997,"spread":0.2343319198376906,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008746426,0.0003073504,0.000237921,0.00004901302,0.0002021158,0.00003477917,0.0003892562,0.0002378476,0.0001161616],"category_scores_gemma":[0.000005610209,0.0002171248,0.0001495677,0.0001779062,0.0001069931,0.00002899772,0.00005105948,0.0002235014,0.000003053244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000124594,"about_ca_system_score_gemma":0.00008285742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002662346,"about_ca_topic_score_gemma":0.000009128155,"domain_scores_codex":[0.9983428,0.0002052604,0.0003236655,0.0004774051,0.000329973,0.0003208695],"domain_scores_gemma":[0.9991373,0.00001006387,0.0001444668,0.0005324812,0.00006084555,0.0001147993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00117823,0.00007723261,0.000004809925,0.0000420234,0.00003526792,1.951865e-7,0.0006464407,0.000006134328,0.9954411,9.675132e-7,0.0004201737,0.002147473],"study_design_scores_gemma":[0.0008959044,0.0006957774,0.003708153,0.00003233373,0.00002372717,0.000004142601,0.00005146257,0.00003268924,0.9936388,0.00004555173,0.0006113309,0.0002601685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981202,0.0002904347,0.00002190882,0.0002660485,0.00009042521,0.0004803738,0.0005648201,0.0000161666,0.0001496632],"genre_scores_gemma":[0.9983398,0.0006898019,0.0001114344,0.0002519822,0.0001374307,0.00001369391,0.0003247921,0.00004052449,0.00009057869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003703343,"threshold_uncertainty_score":0.8854091,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011786431","doi":"10.1016/s0167-4781(00)00236-0","title":"Cloning and functional studies of a luxO regulator LuxT from Vibrio harveyi","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Medical Research Council","keywords":"Vibrio harveyi; Biology; Repressor; Gene; Regulator; Molecular biology; Vibrio; Genetics; Gene expression; Bacteria","authors":[{"name":"Yi Hsing Lin","is_ca":true},{"name":"Carol M. Miyamoto","is_ca":true},{"name":"Edward A. Meighen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01158314996304979,"gpt":0.2378136092161948,"spread":0.226230459253145,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005724875,0.0002834973,0.0003251446,0.00003714664,0.0001756348,0.00004761599,0.00008316858,0.0002247891,0.000044275],"category_scores_gemma":[0.00002015129,0.0002242964,0.00008304852,0.00006779896,0.0002180219,0.00001981946,0.0001650086,0.0001099606,8.754098e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006147864,"about_ca_system_score_gemma":0.00003442154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003514115,"about_ca_topic_score_gemma":0.000006840695,"domain_scores_codex":[0.9987209,0.00007720555,0.0002735232,0.0005617029,0.0001424497,0.0002241825],"domain_scores_gemma":[0.9993526,0.00002330856,0.000147569,0.0003126601,0.00006174447,0.0001021431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004497714,0.00002023825,0.00002671134,0.00002476667,0.000116878,8.533536e-7,0.0002274488,0.000002721181,0.9963815,0.000007823747,0.001147543,0.001593725],"study_design_scores_gemma":[0.000578612,0.0001739938,0.01658924,0.00009033557,0.00005485416,0.00001262576,0.00007030125,0.00001243671,0.9806302,0.0001237961,0.001401513,0.0002620816],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977804,0.001373715,0.000004803823,0.0002217826,0.000190116,0.0001238949,0.0002489056,0.00001539443,0.00004099814],"genre_scores_gemma":[0.9953279,0.001191025,0.002062456,0.0002080261,0.0005960932,0.000002834776,0.000452946,0.00002766305,0.0001309924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01656253,"threshold_uncertainty_score":0.9146543,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093315580","doi":"10.1016/s0167-4781(01)00223-8","title":"Molecular cloning and functional characterization of two murine cDNAs which encode Ubc variants involved in DNA repair and mutagenesis","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Mutagenesis; Ubiquitin-conjugating enzyme; Ubiquitin; Genetics; Molecular cloning; Homologous chromosome; Complementary DNA; Saccharomyces cerevisiae; Gene; Ubiquitin ligase; Molecular biology; Mutant","authors":[{"name":"Janelle Franko","is_ca":true},{"name":"Carolyn Ashley","is_ca":true},{"name":"Wei Xiao","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007073537496538994,"gpt":0.2246045344290077,"spread":0.2175309969324687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001177935,0.0002914507,0.0002826183,0.0001107533,0.00009081909,0.00003308536,0.00009368514,0.0002255992,0.000009275614],"category_scores_gemma":[0.00003494582,0.0002651603,0.00005690938,0.0001833105,0.00007990571,0.00002964807,0.0002664471,0.0001165176,2.006833e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009455966,"about_ca_system_score_gemma":0.00004688195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002412445,"about_ca_topic_score_gemma":0.00001811578,"domain_scores_codex":[0.9984775,0.0001218857,0.0003112927,0.0006658293,0.0001799339,0.000243534],"domain_scores_gemma":[0.9992675,0.00001266953,0.000190521,0.0003386138,0.00007650042,0.0001142419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002828477,0.00004067762,0.0004860569,0.00005096489,0.0000458985,0.000006162748,0.0001356094,0.00001083515,0.9986045,0.0000381301,0.00001207851,0.0002862335],"study_design_scores_gemma":[0.0009656341,0.0001898226,0.04797076,0.00007191661,0.00003948141,0.00003168613,0.00003264301,0.0004005401,0.9497457,0.0002291888,0.00005495599,0.0002676508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989207,0.0001929007,0.0003037247,0.0001295937,0.00009846949,0.0002405788,0.00006178435,0.00002736326,0.00002483552],"genre_scores_gemma":[0.9962692,0.000663296,0.002117821,0.0001395738,0.000159709,0.00001415235,0.0005701262,0.0000365567,0.00002955412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04885878,"threshold_uncertainty_score":0.99998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063764609","doi":"10.1016/j.bbaexp.2005.08.011","title":"A new alternative splice variant of BRCA1 containing an additional in-frame exon","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôtel-Dieu de Québec; Hôpital du Sacré-Cœur de Montréal; Cégep de Rimouski; Cégep de Jonquière; Université Laval; Alberta Children's Hospital; Hôpital du Saint-Sacrement; Centre Hospitalier Universitaire de Sherbrooke; Centre hospitalier universitaire de Québec","funders":"","keywords":"Exon; Alternative splicing; Biology; RNA splicing; Intron; Gene; Genetics; splice; Transcription (linguistics); Molecular biology; RNA","authors":[{"name":"Jessyka Fortin","is_ca":true},{"name":"Anne-Marie Moisan","is_ca":true},{"name":"Martine Dumont","is_ca":true},{"name":"Gilles Leblanc","is_ca":true},{"name":"Yvan Labrie","is_ca":true},{"name":"Francine Durocher","is_ca":true},{"name":"Paul Bessette","is_ca":true},{"name":"Peter J. Bridge","is_ca":true},{"name":"Jocelyne Chiquette","is_ca":true},{"name":"Rachel Laframboise","is_ca":true},{"name":"Jean Lépine","is_ca":true},{"name":"Bernard Lespérance","is_ca":true},{"name":"Roxanne Pichette","is_ca":true},{"name":"Marie Plante","is_ca":true},{"name":"Louise Provencher","is_ca":true},{"name":"Patricia Voyer","is_ca":true},{"name":"Jacques Simard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006206716876269971,"gpt":0.2742030615760878,"spread":0.2679963446998179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005337022,0.0002356835,0.0002213622,0.00007293566,0.00004877642,0.00002031301,0.0001860767,0.0001732798,0.0001012912],"category_scores_gemma":[0.00002242561,0.0002108536,0.00006411532,0.000084219,0.00004669021,0.00001928855,0.000133893,0.0001468134,8.141919e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001104227,"about_ca_system_score_gemma":0.00006624647,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004508634,"about_ca_topic_score_gemma":0.0000286494,"domain_scores_codex":[0.9988612,0.0000464558,0.0002543329,0.0004529027,0.0001562639,0.0002288715],"domain_scores_gemma":[0.9993777,0.00002092299,0.0001215892,0.0002990737,0.00004234155,0.0001384168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001847566,0.00003705968,0.000005564908,0.00001432684,0.00002902145,0.000001820316,0.0004890908,0.0003916199,0.9959685,0.00003862294,0.0007493546,0.002090218],"study_design_scores_gemma":[0.0007249981,0.0003001174,0.003732327,0.00006918983,0.00001655694,0.00002231997,0.00008245631,0.0005363318,0.9926721,0.0001997913,0.00139212,0.0002516955],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971129,0.0002694837,0.001719076,0.0001398768,0.00008127833,0.0001448066,0.0004051047,0.00001171339,0.0001157737],"genre_scores_gemma":[0.9848298,0.000185326,0.01324657,0.000167143,0.0006960154,0.000008023025,0.0008046888,0.00002648857,0.00003594859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01228309,"threshold_uncertainty_score":0.8598359,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060615906","doi":"10.1016/j.bbaexp.2006.01.002","title":"KLF6 is one transcription factor involved in regulating acid ceramidase gene expression","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Kruppel-like factors research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Centre in Green Chemistry and Catalysis","keywords":"Electrophoretic mobility shift assay; Molecular biology; Transcription factor; Promoter; Gene expression; Gene; Reporter gene; Biology; Luciferase; Transfection; RNA interference; Transcription (linguistics); Gene knockdown; Biochemistry; RNA","authors":[{"name":"Jae Ho Park","is_ca":false},{"name":"Efrat Eliyahu","is_ca":false},{"name":"Goutham Narla","is_ca":false},{"name":"Analisa DiFeo","is_ca":false},{"name":"John A. Martignetti","is_ca":false},{"name":"Edward H. Schuchman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01675905747788881,"gpt":0.2656732520134019,"spread":0.2489141945355131,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000126768,0.0005291483,0.000428585,0.0001636908,0.0002296109,0.0001227876,0.0003942523,0.0005773174,0.0001124567],"category_scores_gemma":[0.00004916675,0.0004608972,0.0001687328,0.0002359155,0.0001546245,0.00006848446,0.0003267753,0.0004461487,0.000005838573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006415339,"about_ca_system_score_gemma":0.0000992789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003448033,"about_ca_topic_score_gemma":0.00002868426,"domain_scores_codex":[0.9969921,0.0002368544,0.0005176857,0.001100246,0.00050014,0.0006529609],"domain_scores_gemma":[0.9986015,0.0000205365,0.0002155897,0.0007667048,0.000110163,0.0002854914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004719457,0.0001284016,0.0001577959,0.00006064981,0.00003379473,0.0000017935,0.0007808423,0.00001749336,0.9952292,0.000002195345,0.000596849,0.002519045],"study_design_scores_gemma":[0.001404708,0.0002342235,0.008730642,0.0001404158,0.00001886393,0.000006103319,0.00007668289,0.0001677102,0.9880984,0.0001141524,0.0004656229,0.0005425174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973654,0.0005903828,0.0002710753,0.0007185812,0.0001244592,0.0004873873,0.0003572118,0.00004491462,0.0000405963],"genre_scores_gemma":[0.9905436,0.0005738873,0.006535273,0.0003952385,0.0008073723,0.00002807953,0.000907674,0.00008255091,0.0001262917],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008572846,"threshold_uncertainty_score":0.9997843,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060906487","doi":"10.1016/j.bbaexp.2007.01.004","title":"Translational regulation of PGHS-1 mRNA: 5′ untranslated region and first two exons conferring negative regulation","year":2007,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Inflammatory mediators and NSAID effects","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Heart and Stroke Foundation of Canada","keywords":"Translational regulation; Messenger RNA; Untranslated region; Exon; Translational efficiency; Biology; Molecular biology; Three prime untranslated region; Translation (biology); Gene; Gene expression; RNA-binding protein; Genetics","authors":[{"name":"Natalia Bunimov","is_ca":true},{"name":"Jennifer Erin Smith","is_ca":true},{"name":"Dominique Gosselin","is_ca":true},{"name":"Odette Laneuville","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009907598492717199,"gpt":0.2512832631800183,"spread":0.2413756646873011,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001779118,0.0002917465,0.0003970489,0.0001938875,0.0002063817,0.00002308026,0.00005778026,0.0002379923,0.00002366308],"category_scores_gemma":[0.00003536119,0.0002372285,0.00008615542,0.0002107442,0.0002003579,0.0002163931,0.00002927971,0.0002212649,5.428207e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002138802,"about_ca_system_score_gemma":0.00006043101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003056612,"about_ca_topic_score_gemma":0.0000263686,"domain_scores_codex":[0.9984781,0.00007254492,0.0004326678,0.0004228756,0.0003320148,0.0002617917],"domain_scores_gemma":[0.998998,0.0001704649,0.000275711,0.0002479955,0.0001256056,0.0001822219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001022436,0.00003266346,0.0004452082,0.000149916,0.00005243129,0.000005351907,0.002374259,0.00002260124,0.993922,0.0001946311,0.00009199174,0.001686486],"study_design_scores_gemma":[0.001932488,0.0001508016,0.2224879,0.0003314294,0.0001082465,0.00003952764,0.00004454398,0.0006270299,0.7731276,0.0008975597,0.00006526048,0.00018761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977317,0.0001755871,0.0006486992,0.0005229711,0.0001471581,0.0005467531,0.00002865722,0.00005267438,0.0001457684],"genre_scores_gemma":[0.9972554,0.0001154327,0.001909911,0.00007345478,0.0003544164,0.000004712825,0.00022777,0.0000331531,0.00002569357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2220427,"threshold_uncertainty_score":0.9673896,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141483816","doi":"10.1016/j.bbaexp.2006.10.004","title":"Dusty protein kinases: Primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Kinase; SH3 domain; Cell biology; Gene; Conserved sequence; Protein kinase domain; Fusion protein; Signal transduction; Genetics; Peptide sequence; Proto-oncogene tyrosine-protein kinase Src; Recombinant DNA","authors":[{"name":"Jianbin Peng","is_ca":false},{"name":"Wen-Ji Dong","is_ca":false},{"name":"Ying Chen","is_ca":false},{"name":"Rong Mo","is_ca":true},{"name":"Jan‐Fang Cheng","is_ca":false},{"name":"Chi‐chung Hui","is_ca":true},{"name":"Narla Mohandas","is_ca":false},{"name":"Cheng‐Han Huang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003019510096956574,"gpt":0.1934386744327248,"spread":0.1904191643357682,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007751326,0.0003811123,0.0002976376,0.00007021862,0.000290451,0.00005418501,0.0002499966,0.0004027735,0.000009007973],"category_scores_gemma":[0.00000884676,0.0002492284,0.00009375071,0.0001397265,0.0002386073,0.00002275384,0.0003601503,0.0001966659,2.190262e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002581586,"about_ca_system_score_gemma":0.00007217247,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005830473,"about_ca_topic_score_gemma":0.00001420183,"domain_scores_codex":[0.9982828,0.0001501768,0.0003370506,0.0006666689,0.0002819731,0.000281308],"domain_scores_gemma":[0.9988641,0.00001106245,0.000310269,0.0006367743,0.00008588704,0.0000919751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001730475,0.00004074458,0.00001539932,0.00008364915,0.00001716769,0.000001240367,0.00007858076,0.00001730282,0.9977427,0.000215032,0.001190707,0.0004244479],"study_design_scores_gemma":[0.0005951097,0.0001410789,0.02960256,0.0001054438,0.00003004245,0.0000376792,0.00002905161,0.000004474281,0.9638821,0.004265058,0.0009955873,0.0003117501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963686,0.001810045,0.0004197586,0.0001636118,0.0001583564,0.0006715226,0.0003152794,0.00001886018,0.00007399749],"genre_scores_gemma":[0.9936771,0.0002338623,0.004359542,0.00005773349,0.000471735,0.00001413859,0.0008870102,0.00004285909,0.0002560131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03386052,"threshold_uncertainty_score":0.999996,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090276622","doi":"10.1016/j.bbaexp.2003.11.004","title":"Cloning and characterization of the promoter region of the human prostaglandin F2α receptor gene","year":2003,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Adenosine and Purinergic Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Faculty of Medicine and Dentistry, University of Alberta; Canadian Institutes of Health Research; National Science Foundation","keywords":"Promoter; TATA box; 5' flanking region; Molecular biology; CAAT box; Biology; Gene; Binding site; Repressor; Start codon; DNA binding site; Transcription factor; Genetics; Gene expression; Nucleotide","authors":[{"name":"Dean B. Zaragoza","is_ca":true},{"name":"Robyn R. Wilson","is_ca":true},{"name":"Kathleen M. Eyster","is_ca":false},{"name":"David M. Olson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007266395157552319,"gpt":0.2180519818648353,"spread":0.210785586707283,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006060788,0.0001720608,0.0001621622,0.00002288004,0.0001689476,0.00001789213,0.0001508975,0.0001511292,0.00000444972],"category_scores_gemma":[0.00001936432,0.00009790004,0.00006953428,0.00009667573,0.0001336846,0.00001009432,0.0001561492,0.0001021966,4.952012e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003774504,"about_ca_system_score_gemma":0.00003023072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004445801,"about_ca_topic_score_gemma":3.862758e-7,"domain_scores_codex":[0.999099,0.0001329504,0.0002188233,0.0002883575,0.0001255034,0.000135418],"domain_scores_gemma":[0.9992782,0.000006125243,0.0002853432,0.0003423592,0.00005125828,0.00003675027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004291487,0.00002044068,0.0003610402,0.00004057182,0.00002125244,1.285801e-7,0.0002772035,0.00000114068,0.9989007,0.00003130761,0.0002595797,0.00004370464],"study_design_scores_gemma":[0.0003308133,0.00009420276,0.01175188,0.00008630469,0.00002856201,0.00001387684,0.00001955741,0.000003227659,0.9870083,0.00009862413,0.0004391132,0.0001255448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991435,0.000202267,0.00003432545,0.0001720172,0.0001022894,0.0002668042,0.00005216421,0.000004402125,0.00002225361],"genre_scores_gemma":[0.999128,0.0001514321,0.0002338942,0.00008784738,0.0001460388,0.000005599778,0.0001254134,0.00001918911,0.0001025123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01189242,"threshold_uncertainty_score":0.3992248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988641645","doi":"10.1016/s0167-4781(01)00247-0","title":"Gene structure, chromosomal localization and analysis of 3-ketosteroid reductase activity of the human 3(α→β)-hydroxysteroid epimerase","year":2001,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Hormonal Regulation and Hypertension","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; Université Laval","funders":"Medical Research Council Canada","keywords":"Molecular biology; Biology; Gene; Intron; Reductase; Transcription (linguistics); Exon; Biochemistry; Enzyme","authors":[{"name":"Xiaofang Huang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01294034936362784,"gpt":0.2609710378191974,"spread":0.2480306884555696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006905007,0.0002979132,0.0006706502,0.0002489375,0.000205353,0.00002301398,0.000121476,0.0002104099,0.00005662368],"category_scores_gemma":[0.00002880603,0.0001910369,0.0001781235,0.0006297171,0.0002719024,0.000137659,0.0001583668,0.0001846368,1.852591e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002370123,"about_ca_system_score_gemma":0.00005008912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004677784,"about_ca_topic_score_gemma":0.00001015265,"domain_scores_codex":[0.9983484,0.0001448947,0.0004056225,0.0004701515,0.0004257574,0.0002051921],"domain_scores_gemma":[0.9986996,0.00003365163,0.0004085555,0.0005555699,0.0001401199,0.0001624686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003562696,0.0000868469,0.0007937832,0.00006407613,0.0002923494,0.000004261562,0.0003626369,0.00003702892,0.9965542,0.00001189908,0.00006364237,0.001373031],"study_design_scores_gemma":[0.0008171165,0.0001606998,0.1862079,0.00008798008,0.00089789,0.00004938139,0.00002054573,0.00132245,0.8101324,0.0001151478,0.00003659136,0.0001518276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986219,0.0002386714,0.0000580171,0.0003622021,0.0000654113,0.0003327786,0.0002776844,0.00001785179,0.00002551385],"genre_scores_gemma":[0.9987625,0.000171377,0.0003762294,0.0001730864,0.000113484,0.000002436695,0.0003401459,0.00002630003,0.00003446465],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1864217,"threshold_uncertainty_score":0.7790259,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069913066","doi":"10.1016/s0167-4781(00)00181-0","title":"Isoform-specific exon skipping in a variant form of ClC-2","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Exon; Exon skipping; Complementary DNA; Intron; Exon trapping; Alternative splicing; Biology; Gene isoform; Molecular biology; splice; RNA splicing; Splice site mutation; Genetics; genomic DNA; Rapid amplification of cDNA ends; Sequence (biology); Gene; RNA; Molecular cloning","authors":[{"name":"Matthew E. Loewen","is_ca":true},{"name":"Donald W. MacDonald","is_ca":true},{"name":"Kim Gaspar","is_ca":true},{"name":"George W. Forsyth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005960116112573568,"gpt":0.2385332497588089,"spread":0.2325731336462353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009860531,0.0003052299,0.0003446675,0.0001100376,0.00009681087,0.00003047294,0.0002015839,0.0002847955,0.00001432102],"category_scores_gemma":[0.00001091571,0.0002369059,0.0001336636,0.000217165,0.0001378038,0.000019355,0.000122426,0.0001688016,7.038965e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001385662,"about_ca_system_score_gemma":0.00003094099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001644622,"about_ca_topic_score_gemma":0.00001012434,"domain_scores_codex":[0.9984768,0.00006586777,0.0003892657,0.0005798211,0.000175559,0.000312661],"domain_scores_gemma":[0.9992014,0.00001239949,0.0001743173,0.0004776771,0.000049263,0.00008498533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002708884,0.00006041751,0.00001043129,0.00002328527,0.00002730888,0.000003374623,0.0001763754,0.000003250823,0.9916099,0.00001287461,0.0003116526,0.007490273],"study_design_scores_gemma":[0.0004529033,0.0002238075,0.002023584,0.0001028039,0.00002157928,0.00002413439,0.00004745722,0.0000409389,0.9944795,0.0006147496,0.001661252,0.0003072432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988468,0.0003120129,0.000126543,0.0001442796,0.00004040381,0.000185385,0.0000853574,0.00002808071,0.0002311471],"genre_scores_gemma":[0.9899772,0.002411542,0.006866395,0.000160037,0.0001868955,0.000005892769,0.0002799006,0.0000283296,0.00008383781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008869621,"threshold_uncertainty_score":0.9660742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1968535225","doi":"10.1016/s0167-4781(01)00346-3","title":"Cloning and expression analysis of the chicken DEAD box gene DDX1","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Cancer Institute","keywords":"Biology; DEAD box; Gene expression; Molecular biology; In situ hybridization; Northern blot; Cell biology; Gene; RNA Helicase A; Complementary DNA; RNA; Genetics","authors":[{"name":"Roseline Godbout","is_ca":true},{"name":"Mary Packer","is_ca":true},{"name":"Sachin Katyal","is_ca":true},{"name":"Stacey Bléoo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009037138567672066,"gpt":0.2404933929184411,"spread":0.2314562543507691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001030544,0.0002931234,0.0003529544,0.0001281326,0.0002992348,0.00006353605,0.0003282753,0.0002407841,0.00002670853],"category_scores_gemma":[0.00005008776,0.0001908232,0.0001907675,0.0003423253,0.0002007293,0.00001851783,0.0005189229,0.0002160342,5.045236e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008447675,"about_ca_system_score_gemma":0.00002346225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000307288,"about_ca_topic_score_gemma":0.000009622734,"domain_scores_codex":[0.998283,0.0001575025,0.0002917906,0.0006095691,0.000305369,0.0003527232],"domain_scores_gemma":[0.9988782,0.00002717363,0.0002113612,0.0006487501,0.00006648709,0.0001680276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009315762,0.00003308471,0.0002807962,0.00002558489,0.0001852608,0.00000101442,0.0002456325,0.00002429511,0.9978458,0.000004928884,0.0007128826,0.0005475614],"study_design_scores_gemma":[0.0004178924,0.0001271738,0.01454823,0.00005337265,0.0001665822,0.000006932309,0.00004996609,0.0005581005,0.983575,0.00004017468,0.0002232196,0.0002332896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980433,0.001108886,0.00007336403,0.0002878511,0.00006781825,0.0001987068,0.0001279215,0.00001216714,0.00007995872],"genre_scores_gemma":[0.99682,0.001136745,0.001237862,0.000179632,0.000206664,0.000008470523,0.0001482185,0.00002807127,0.0002343516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01427073,"threshold_uncertainty_score":0.7781544,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010035134","doi":"10.1016/j.bbaexp.2005.09.002","title":"Regulatory studies of murine methylenetetrahydrofolate reductase reveal two major promoters and NF-κB sensitivity","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Folate and B Vitamins Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital; Montreal Children's Hospital","funders":"","keywords":"Promoter; Transcription factor; Transfection; Methylenetetrahydrofolate reductase; Molecular biology; TATA box; Binding site; Biology; Gene; Gene expression; Genetics; Genotype","authors":[{"name":"Laura Pickell","is_ca":true},{"name":"Pamela V. Tran","is_ca":true},{"name":"Daniel Leclerc","is_ca":true},{"name":"John Hiscott","is_ca":true},{"name":"Rima Rozen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01915952991662825,"gpt":0.3216348034820659,"spread":0.3024752735654376,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003037059,0.0003858454,0.0006908975,0.0002114586,0.0001795997,0.00002808342,0.00009267827,0.0001778159,0.00001311027],"category_scores_gemma":[0.00007143781,0.0002768258,0.0001158576,0.0002284828,0.0004438539,0.0002080722,0.0002966029,0.0003810842,0.000001583778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004205926,"about_ca_system_score_gemma":0.00007661225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000379609,"about_ca_topic_score_gemma":0.000007537491,"domain_scores_codex":[0.9978544,0.0002084608,0.0004078549,0.0006752418,0.000443875,0.0004101562],"domain_scores_gemma":[0.9987518,0.00009435887,0.0001965356,0.0005379961,0.0001514813,0.0002678925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006294099,0.000101207,0.00003543044,0.0003356077,0.0002520964,0.00002726695,0.001108224,0.000001807267,0.9916948,0.000008607733,0.00100931,0.00479624],"study_design_scores_gemma":[0.001757882,0.0004595162,0.01014442,0.0003224567,0.000199757,0.0001285314,0.000142196,0.000130319,0.986135,0.0001566549,0.0001408904,0.0002823767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956162,0.001656718,0.000002545298,0.001925396,0.00008521331,0.0004833459,0.0001305188,0.00004675274,0.00005329397],"genre_scores_gemma":[0.9934425,0.0009927509,0.004569267,0.0001853841,0.0004286759,0.000007104137,0.00009288904,0.00004278259,0.0002386253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01010899,"threshold_uncertainty_score":0.9999684,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046597264","doi":"10.1016/j.bbaexp.2004.11.003","title":"Identification and characterization of hepsin/-TM, a non-transmembrane hepsin isoform","year":2004,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Cancer Mechanisms and Therapy","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"","keywords":"Transmembrane protein; Alternative splicing; Gene isoform; Transmembrane domain; Biology; Proteases; Chemistry; Cell biology; Molecular biology; Biochemistry; Enzyme; Gene; Receptor","authors":[{"name":"Yang Li","is_ca":true},{"name":"Zhenbao Yu","is_ca":true},{"name":"Xin Zhao","is_ca":true},{"name":"Shi‐Hsiang Shen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005774073498639762,"gpt":0.2374056084848088,"spread":0.231631534986169,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006414128,0.0002463877,0.0003663404,0.0001212856,0.0001171696,0.00004423689,0.00007871017,0.0001712263,0.00002431023],"category_scores_gemma":[0.000004560162,0.0001938912,0.00007685216,0.0001809456,0.00009530132,0.0002036543,0.00004083697,0.0001478931,9.485367e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002637116,"about_ca_system_score_gemma":0.00006825277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003310027,"about_ca_topic_score_gemma":0.000003217697,"domain_scores_codex":[0.9987962,0.00002076774,0.0003336599,0.0004156216,0.0002377301,0.0001959952],"domain_scores_gemma":[0.9992439,0.000009621554,0.0002266184,0.0003149898,0.00007632591,0.0001285455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004754027,0.00007385524,0.000004950993,0.0001867593,0.00003972429,0.000002148483,0.001299582,7.18933e-7,0.9958543,0.0001225159,0.00001025726,0.001929743],"study_design_scores_gemma":[0.001863997,0.0002974209,0.02892325,0.0002663629,0.00008351521,0.00003408933,0.00005247792,0.00004817661,0.9670843,0.00107519,0.00007853024,0.0001927023],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972227,0.0001062163,0.0006936822,0.001146848,0.0001719798,0.0004583584,0.0001459483,0.0000361432,0.00001814765],"genre_scores_gemma":[0.9970675,0.001080188,0.0008716474,0.0003095193,0.0002120499,0.00001181086,0.0003631001,0.00003473417,0.00004944355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0289183,"threshold_uncertainty_score":0.7906654,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089566997","doi":"10.1016/j.bbaexp.2004.07.001","title":"Structure of primate and rodent orthologs of the prostate cancer susceptibility gene ELAC2","year":2004,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Canada Research Chairs; Myriad Genetics","keywords":"Biology; Gene; Genetics; Exon; Complementary DNA; Molecular biology","authors":[{"name":"Martine Dumont","is_ca":true},{"name":"David A. Frank","is_ca":false},{"name":"Anne-Marie Moisan","is_ca":true},{"name":"Martine Tranchant","is_ca":true},{"name":"Penny Soucy","is_ca":true},{"name":"Rock Breton","is_ca":true},{"name":"Fernand Labrie","is_ca":true},{"name":"Sean V. Tavtigian","is_ca":false},{"name":"Jacques Simard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006982775187899222,"gpt":0.2511564479296374,"spread":0.2441736727417382,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005261979,0.0002587526,0.0003995803,0.00005583461,0.0001077279,0.00001448135,0.0001000712,0.000174531,0.00002570821],"category_scores_gemma":[0.00003812161,0.0001498987,0.00009853798,0.0001782033,0.0002964751,0.00007985484,0.0001620104,0.0002228528,1.422771e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003291237,"about_ca_system_score_gemma":0.0001212312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001189723,"about_ca_topic_score_gemma":0.0000238037,"domain_scores_codex":[0.9986823,0.00005645903,0.0003204684,0.0004405007,0.0002931373,0.0002071129],"domain_scores_gemma":[0.9989923,0.00001908747,0.000287618,0.0004759642,0.0001224411,0.0001026066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003664723,0.0000585171,0.003164254,0.0002363137,0.00005358322,0.000001880122,0.0008479299,0.00002743256,0.9947358,0.00002364083,0.00003152763,0.0004526293],"study_design_scores_gemma":[0.001016986,0.0001786244,0.2615449,0.0001710731,0.0001512521,0.00003644379,0.00004225115,0.00000870925,0.7359886,0.000739213,0.000008646154,0.0001133238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978288,0.0004830759,0.00001004042,0.0006146817,0.0002015606,0.0005355554,0.0002906649,0.00002469303,0.00001097142],"genre_scores_gemma":[0.997925,0.000398517,0.001279549,0.0001486158,0.0001239376,0.000004837683,0.00007974296,0.0000241187,0.00001571365],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2587472,"threshold_uncertainty_score":0.6112689,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1973297320","doi":"10.1016/s0167-4781(01)00343-8","title":"Functional human NAIP promoter transcription regulatory elements for the NAIP and ΨNAIP genes","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; Children's Hospital of Eastern Ontario","funders":"Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Gene; Promoter; Transcription factor; Transcriptional regulation; Transcription (linguistics); Reporter gene; Gene expression; Regulation of gene expression; Molecular biology; Regulatory sequence; Genetics","authors":[{"name":"Ming Xu","is_ca":false},{"name":"Takeya Okada","is_ca":false},{"name":"Harumi Sakai","is_ca":false},{"name":"Natsuki Miyamoto","is_ca":false},{"name":"Yoshiko Yanagisawa","is_ca":false},{"name":"Alex MacKenzie","is_ca":true},{"name":"Shinji Hadano","is_ca":false},{"name":"Joh-E Ikeda","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01931435732215062,"gpt":0.2543131516097124,"spread":0.2349987942875617,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001185743,0.0002495251,0.0001632238,0.00004772855,0.0005311628,0.00008904126,0.0001620423,0.0001799043,0.00003190468],"category_scores_gemma":[0.00001360187,0.0001683803,0.00009759255,0.00005774492,0.0001564676,0.00002057678,0.0001054069,0.0001373562,8.389464e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009291845,"about_ca_system_score_gemma":0.00001620128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007193798,"about_ca_topic_score_gemma":0.000006055516,"domain_scores_codex":[0.9986535,0.00007061382,0.0002202533,0.0005167265,0.0002210715,0.0003178063],"domain_scores_gemma":[0.999359,0.00001752522,0.00009708421,0.0003409275,0.00006393173,0.0001215296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001537299,0.0000324726,0.00003243508,0.00004635349,0.0000658815,3.956549e-7,0.0001065482,0.000002071245,0.9924504,0.00002343119,0.004217395,0.002868903],"study_design_scores_gemma":[0.0008417094,0.0003116762,0.00952227,0.00002772232,0.00003847432,0.0000116331,0.00004188052,0.0002558337,0.9860581,0.0001920205,0.002478493,0.0002201936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969676,0.001349794,0.0002184103,0.0007386213,0.0001138582,0.0004753724,0.00009772431,0.0000155723,0.00002311235],"genre_scores_gemma":[0.9968207,0.0006709022,0.0005953291,0.0002656603,0.0005829477,0.00005106451,0.0002786347,0.00003253243,0.0007022214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009489835,"threshold_uncertainty_score":0.6866348,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020423327","doi":"10.1016/s0167-4781(00)00096-8","title":"Extraordinarily high density of unrelated genes showing overlapping and intraintronic transcription units","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"GABA and Rice Research","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Complementation; Gene; Genetics; Biology; Coding region; Drosophila melanogaster; Escherichia coli; Auxotrophy; Transcription (linguistics); Complementary DNA; Molecular biology","authors":[{"name":"Stephen Misener","is_ca":true},{"name":"Virginia K. Walker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01410936165764232,"gpt":0.2141567591828382,"spread":0.2000473975251959,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001067656,0.0002302809,0.000282734,0.00002919918,0.0003044654,0.00006877635,0.0001582381,0.0002092571,0.0001622127],"category_scores_gemma":[0.000009956465,0.00009916517,0.00006097769,0.0003323619,0.0001515034,0.000196425,0.00006672214,0.0002273385,0.000001104061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001287228,"about_ca_system_score_gemma":0.00001968094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002508578,"about_ca_topic_score_gemma":0.00003583466,"domain_scores_codex":[0.998628,0.0001428116,0.0002337573,0.0004281095,0.000240586,0.0003267327],"domain_scores_gemma":[0.999544,0.00007632968,0.00008198091,0.00009081298,0.00006705194,0.0001398047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001371934,0.0000267276,0.00003152321,0.00002527505,0.00002405772,0.000001874503,0.0003842428,0.000003842923,0.9559519,0.00003990331,0.00004227001,0.04333119],"study_design_scores_gemma":[0.0002557652,0.0002068668,0.144878,0.00007618,0.00002592005,0.00001388574,0.0001751074,0.00008430311,0.853319,0.0006532784,0.000118696,0.0001929705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983655,0.0004439248,0.000002504526,0.0007687804,0.00005804421,0.0001974298,0.00008586895,0.00003956192,0.00003840583],"genre_scores_gemma":[0.9977453,0.00161745,0.000179071,0.00005597959,0.0001818567,0.000002851496,0.0001571378,0.000003283074,0.00005709132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1448464,"threshold_uncertainty_score":0.4043838,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2036131882","doi":"10.1016/s0167-4781(00)00191-3","title":"Chromosomal organization and localization of the human histone deacetylase 5 gene (HDAC5)","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Connaught Fund; Hospital for Sick Children; University of Washington","keywords":"Biology; Exon; Histone deacetylase 5; SAP30; Molecular biology; Genetics; Histone deacetylase; Gene; Histone","authors":[{"name":"Ulrich Mahlknecht","is_ca":false},{"name":"Susanne Schnittger","is_ca":false},{"name":"Oliver G. Ottmann","is_ca":false},{"name":"Claudia Schoch","is_ca":false},{"name":"Mira Mosebach","is_ca":false},{"name":"Wolfgang Hiddemann","is_ca":false},{"name":"Dieter Hoelzer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004618565292420356,"gpt":0.2458522225139865,"spread":0.2412336572215661,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007042958,0.0002669005,0.0002245394,0.00005646991,0.0003620774,0.00003951296,0.0002340034,0.0002651581,0.00008309354],"category_scores_gemma":[0.00004062667,0.0002023405,0.00006393681,0.0002476732,0.0003270953,0.0000185078,0.0002254244,0.0001599785,0.000001682127],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002374353,"about_ca_system_score_gemma":0.00008035629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002066813,"about_ca_topic_score_gemma":0.000005723098,"domain_scores_codex":[0.9984928,0.0001552051,0.0002929412,0.0005352398,0.000277802,0.0002459502],"domain_scores_gemma":[0.9990807,0.00001047917,0.0001537,0.0005151898,0.0001196676,0.0001202574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006858587,0.0000528335,0.00002957206,0.00004090301,0.00002429405,0.000001108206,0.0002812706,0.00004344527,0.9973986,0.000007739108,0.001601683,0.0004499381],"study_design_scores_gemma":[0.00059218,0.0001539673,0.001627616,0.00003638699,0.00003275746,0.00003812263,0.0000154122,0.00006373689,0.9963134,0.00003643162,0.0008556009,0.000234382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988612,0.0003239034,0.00005593681,0.0001301895,0.00007302029,0.0002826104,0.0001808522,0.00001840558,0.00007390327],"genre_scores_gemma":[0.997761,0.0004349271,0.0002823751,0.0001245531,0.0002760081,0.000006246674,0.0008235116,0.00004103948,0.000250351],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001598043,"threshold_uncertainty_score":0.8251207,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046761461","doi":"10.1016/j.bbaexp.2006.05.005","title":"Involvement of LuxR, a quorum sensing regulator in Vibrio harveyi, in the promotion of metabolic genes: argA, purM, lysE and rluA","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Vibrio harveyi; Quorum sensing; Operon; Repressor; Biology; Promoter; Plasmid; Gene; Autoinducer; Escherichia coli; Genetics; Microbiology; Vibrio; Virulence; Bacteria; Gene expression","authors":[{"name":"Carol M. Miyamoto","is_ca":true},{"name":"Edward A. Meighen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007348072562212289,"gpt":0.2204842178794271,"spread":0.2131361453172148,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001890018,0.0002514571,0.0003423963,0.0001039519,0.00006242806,0.00003635715,0.0001200196,0.0002116749,0.000002123056],"category_scores_gemma":[0.00001404716,0.0001804034,0.0000720846,0.0001765091,0.0001468758,0.00001956671,0.0001513615,0.0001098262,9.37774e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006054038,"about_ca_system_score_gemma":0.00004204947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002709036,"about_ca_topic_score_gemma":0.0001504772,"domain_scores_codex":[0.9985333,0.0001848419,0.0004272345,0.0004362456,0.0001688109,0.0002495481],"domain_scores_gemma":[0.9992758,0.00001413683,0.0002672416,0.0003529228,0.00004807391,0.00004179937],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001594262,0.000074462,0.0002918706,0.00005939103,0.00001788122,0.00000131968,0.0002738338,0.00000649906,0.9981215,0.00004052406,0.00006678643,0.0008864771],"study_design_scores_gemma":[0.0006441441,0.0001475796,0.06180198,0.0001037968,0.00002896045,0.00001168784,0.000112538,0.00004640028,0.9365879,0.0001308692,0.0001978058,0.0001863083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982292,0.0009915644,0.0000109568,0.0002715293,0.00007947411,0.0003219495,0.00007229396,0.000004476605,0.00001852232],"genre_scores_gemma":[0.9974135,0.0004477889,0.001617449,0.00007552305,0.0001820691,0.000002932615,0.000231032,0.00001966864,0.00001008485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0615336,"threshold_uncertainty_score":0.7356636,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994839269","doi":"10.1016/j.bbaexp.2006.11.009","title":"Identification of c-myc coding region determinant RNA sequences and structures cleaved by an RNase1-like endoribonuclease","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Northern British Columbia","funders":"","keywords":"Endoribonuclease; RNA; RNase P; Endonuclease; Molecular biology; Messenger RNA; Biology; Enzyme; Nucleotide; Cleavage (geology); RNase H; Gene; Biochemistry; Chemistry","authors":[{"name":"Alaeddin Tafech","is_ca":true},{"name":"William R. Bennett","is_ca":true},{"name":"Fergil Mills","is_ca":true},{"name":"Chow H. Lee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00762839026641138,"gpt":0.2504992767249258,"spread":0.2428708864585144,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009849045,0.0002733183,0.0002466507,0.00007723457,0.0002300493,0.0001023393,0.0002216562,0.0002075442,0.00000268313],"category_scores_gemma":[0.00002498953,0.0002191248,0.00006604799,0.0000922036,0.0002346177,0.00004227171,0.0001511346,0.0001375994,1.94589e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001042721,"about_ca_system_score_gemma":0.00004118227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001310026,"about_ca_topic_score_gemma":0.00001564813,"domain_scores_codex":[0.9983676,0.0001296322,0.0003534954,0.000612421,0.0002344962,0.0003023258],"domain_scores_gemma":[0.999053,0.00001726043,0.0002842402,0.0004107488,0.00007861467,0.0001561284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002396811,0.0000304571,0.00006035651,0.00005451054,0.00001856414,0.000003530963,0.00007618016,0.000005456449,0.9973568,0.00003124805,0.0008395769,0.001283618],"study_design_scores_gemma":[0.0004734806,0.0002699292,0.00614293,0.00003898412,0.00002751501,0.00002917144,0.00008531959,0.0002482877,0.9919096,0.0004103408,0.0001058786,0.0002585903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987757,0.0004443642,0.0001874736,0.00009153892,0.00008179263,0.0002219593,0.0001673763,0.00001662078,0.00001321156],"genre_scores_gemma":[0.9980661,0.0005612936,0.0004612863,0.00007070582,0.0002222037,0.00000732622,0.0004862814,0.00003027206,0.00009447506],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006082573,"threshold_uncertainty_score":0.8935648,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2023549679","doi":"10.1016/s0167-4781(00)00065-8","title":"Cloning and characterization of a novel RNA-binding protein SRL300 with RS domains","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Messenger RNA; Cloning (programming); Transcription factor; Complementary DNA; Biology; Molecular biology; Cell biology; RNA-binding protein; RNA; Binding protein; Computational biology; Genetics; Gene","authors":[{"name":"Yukiharu Sawada","is_ca":false},{"name":"Yutaka Miura","is_ca":true},{"name":"Kazumi Umeki","is_ca":false},{"name":"Taiki Tamaoki","is_ca":true},{"name":"Kei Fujinaga","is_ca":false},{"name":"S Ohtaki","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006071069207213585,"gpt":0.2298861660838421,"spread":0.2238150968766285,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006746704,0.0002249769,0.000211195,0.00006101072,0.0001662047,0.00005521652,0.0001270267,0.0001522356,0.00001393811],"category_scores_gemma":[0.00000955082,0.0001669731,0.00004080119,0.0001128962,0.000131313,0.00002371217,0.00009856488,0.0001329889,3.262536e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006495445,"about_ca_system_score_gemma":0.00004546179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001435134,"about_ca_topic_score_gemma":0.000002728223,"domain_scores_codex":[0.9988579,0.00004786068,0.0001918669,0.0004436035,0.0001888678,0.0002698943],"domain_scores_gemma":[0.9994338,0.000006936993,0.0001266565,0.0002614725,0.00004403023,0.0001270853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004733831,0.00003571208,0.00002062067,0.00004965308,0.00003609049,0.000001268815,0.0001425103,0.000002490703,0.9979409,0.000009851829,0.0000129593,0.001274544],"study_design_scores_gemma":[0.0008760991,0.0003787357,0.002843467,0.0001464703,0.00001642372,0.00001707535,0.00003085247,0.00008061178,0.9952527,0.00001117059,0.0001305398,0.0002158257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991825,0.00004747606,0.0001139438,0.0001363348,0.00001579405,0.0003129373,0.0001182687,0.00001209521,0.00006060822],"genre_scores_gemma":[0.9965915,0.0002371881,0.002261671,0.00005365433,0.000134558,0.00001338852,0.000349951,0.00002981261,0.0003282629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002822846,"threshold_uncertainty_score":0.6808966,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089318736","doi":"10.1016/s0167-4781(02)00544-4","title":"Genetics and differential expression of NADH:ubiquinone oxidoreductase B8 subunit in brains of genetic strains of mice differing in voluntary alcohol consumption","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Coenzyme Q10 studies and effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Gene; Biology; Genetics; Oxidoreductase; Single-nucleotide polymorphism; Gene expression; Haplotype; Genotype; Protein subunit; Alcohol dehydrogenase; Ethanol; Molecular biology; Biochemistry; Enzyme","authors":[{"name":"Michelle Harrison","is_ca":true},{"name":"Shiva M. Singh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01190231042070273,"gpt":0.2379579034630252,"spread":0.2260555930423225,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00005370097,0.0003128612,0.0004710198,0.0001560463,0.00005145033,0.00001035688,0.0001683671,0.000234365,0.0000167417],"category_scores_gemma":[0.00002259798,0.0002750461,0.00008176301,0.0001279148,0.0002559444,0.00001287363,0.0003369088,0.0001571987,1.086708e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001031521,"about_ca_system_score_gemma":0.00001696427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006463209,"about_ca_topic_score_gemma":0.00005599502,"domain_scores_codex":[0.9984037,0.0001289965,0.0005072549,0.000490524,0.0001886873,0.0002808928],"domain_scores_gemma":[0.9991987,0.00003134225,0.0002887892,0.0003415337,0.00004838474,0.00009127064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002607932,0.0001648344,0.002982719,0.0002898788,0.00003244913,0.000002695563,0.0007651357,0.00002730249,0.994803,0.000001565748,0.0001639052,0.0005057793],"study_design_scores_gemma":[0.00121908,0.0003137602,0.2178395,0.000209208,0.0000315127,0.000007375424,0.00008293704,0.0002153723,0.7798496,0.00002041073,0.00000703721,0.0002041303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973716,0.001914413,0.0000251854,0.00004425452,0.00007778541,0.0003220236,0.0002349062,0.000005036598,0.000004867793],"genre_scores_gemma":[0.9953225,0.003530949,0.0008536788,0.00002372074,0.00009775947,0.000009306069,0.0001258444,0.00002833992,0.000007920234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2149533,"threshold_uncertainty_score":0.9999702,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981991478","doi":"10.1016/s0167-4781(00)00059-2","title":"Increased xylanase production in Streptomyces lividans after replacement of the signal peptide: dependence on box and inverted repeat sequence","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Bristol-Myers Squibb Canada; Bristol-Myers Squibb","keywords":"Xylanase; Inverted repeat; Biology; Signal peptide; Nucleic acid sequence; Genetics; Molecular biology; Gene; Peptide sequence; Biochemistry; Enzyme","authors":[{"name":"Hania Kébir","is_ca":false},{"name":"Claude Dupont","is_ca":true},{"name":"Rolf Morosoli","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007511933623283288,"gpt":0.2242312156657057,"spread":0.2167192820424224,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001274986,0.0002397755,0.0001895356,0.00004422775,0.00009816939,0.00002791394,0.0001716499,0.0001658633,0.00004949894],"category_scores_gemma":[0.00003015653,0.0001628115,0.00005757491,0.0001045873,0.0001273274,0.00001784315,0.0001092993,0.0001276428,5.899229e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001099598,"about_ca_system_score_gemma":0.00004783829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006620571,"about_ca_topic_score_gemma":0.00002592214,"domain_scores_codex":[0.9985294,0.0002133108,0.000246561,0.000602379,0.0002145276,0.0001937878],"domain_scores_gemma":[0.9992567,0.00001644343,0.0001380107,0.0004835828,0.00003155262,0.00007369915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009359007,0.00004459268,0.00023226,0.00003532,0.00001847997,0.000001710028,0.0001906745,0.000009973832,0.9961769,0.000002230942,0.000130766,0.002221171],"study_design_scores_gemma":[0.000329171,0.0003137582,0.009664347,0.0001946711,0.00002236182,0.00001317637,0.00004192979,0.00002007484,0.9889206,0.0001789895,0.0001019163,0.0001989819],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989779,0.0001910163,0.000004960914,0.0002933235,0.00004606656,0.0003628914,0.00007364871,0.000008810672,0.00004138178],"genre_scores_gemma":[0.9983743,0.0004914062,0.0005846932,0.0002423606,0.0001088165,0.00003197007,0.00005039687,0.0000180958,0.00009789006],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009432088,"threshold_uncertainty_score":0.6639259,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055470065","doi":"10.1016/j.bbaexp.2007.06.002","title":"The identification and sequence analysis of a new Reg3gamma and Reg2 in the Syrian golden hamster","year":2007,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Montreal General Hospital","funders":"Canadian Institutes of Health Research; Genome Canada","keywords":"Hamster; Biology; Gene; Complementary DNA; Rapid amplification of cDNA ends; Molecular biology; Coding region; Sequence analysis; Genetics; Peptide sequence; Gene expression; Molecular cloning","authors":[{"name":"Mauro Castellarin","is_ca":true},{"name":"Maria Petropavlovskaia","is_ca":true},{"name":"Mark Lipsett","is_ca":true},{"name":"Lawrence Rosenberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01676273429399189,"gpt":0.2816011039667855,"spread":0.2648383696727936,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003142533,0.0001506366,0.0002709559,0.0001467617,0.0001253102,0.00006439159,0.00009412362,0.00009907672,0.00000568769],"category_scores_gemma":[0.00008457473,0.00007929399,0.00005550663,0.0004235036,0.000171227,0.00008769433,0.00005251367,0.0001347704,2.741354e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001111019,"about_ca_system_score_gemma":0.00002884248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006332969,"about_ca_topic_score_gemma":0.00002349586,"domain_scores_codex":[0.9989377,0.00007378142,0.0003106842,0.0002968191,0.0002137863,0.0001672508],"domain_scores_gemma":[0.9991206,0.0001839981,0.0001837699,0.0003765561,0.00003951275,0.00009556255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002019939,0.00001161005,0.0007123984,0.00002753284,0.00009281712,0.000001556324,0.001669193,3.021482e-7,0.994357,0.00006039201,0.0003625818,0.002502619],"study_design_scores_gemma":[0.0004229846,0.00006369886,0.2687449,0.00006082135,0.0003392533,0.000009057499,0.0004103597,0.00009108977,0.7292067,0.0003609654,0.0002151072,0.00007506619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969854,0.0005152727,0.00003950256,0.002038806,0.00004735238,0.000232286,0.00001893252,0.00001099414,0.0001114886],"genre_scores_gemma":[0.998498,0.0004617551,0.0003412245,0.0003596436,0.00009588421,0.000003618551,0.00005741026,0.000008326505,0.0001741424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2680325,"threshold_uncertainty_score":0.3233515,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996194833","doi":"10.1016/s0167-4781(00)00009-9","title":"Structural conservation and variation among U5 small nuclear RNAs from trypanosomatid protozoa","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Small nuclear RNA; Biology; Crithidia fasciculata; Protozoa; Trypanosoma brucei; Genetics; RNA","authors":[{"name":"Murray N. Schnare","is_ca":true},{"name":"Michael W. Gray","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01486117850638155,"gpt":0.2119548661108485,"spread":0.1970936876044669,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005057871,0.000293846,0.0002857866,0.00002146347,0.000519488,0.000218241,0.0002095485,0.0001959921,0.0002688085],"category_scores_gemma":[0.00003159897,0.0001270505,0.0000560644,0.0001660767,0.0001720529,0.0003127685,0.0001583257,0.0002191341,0.000004960707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001560818,"about_ca_system_score_gemma":0.000009418232,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007938241,"about_ca_topic_score_gemma":0.0001320623,"domain_scores_codex":[0.9984275,0.0001631055,0.0002556043,0.0005561649,0.0002836388,0.0003139563],"domain_scores_gemma":[0.9994089,0.0001340854,0.000144416,0.0001112542,0.00005009417,0.0001512228],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001845687,0.00001532391,0.0001295526,0.00001252541,0.00003064507,0.000001758996,0.000582017,8.727876e-7,0.9923565,0.00001065194,0.0004305968,0.006244978],"study_design_scores_gemma":[0.0002220942,0.0001123225,0.4588381,0.00004998074,0.00001750645,0.000003464882,0.00005515859,0.0003140162,0.5388405,0.0009101862,0.0004230746,0.0002135783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970232,0.00008758304,3.928682e-7,0.001168956,0.00005407859,0.0005673325,0.0009439074,0.00008534528,0.00006917782],"genre_scores_gemma":[0.997918,0.0003817081,0.0005203123,0.0002820478,0.0003241911,0.00002048843,0.0004991888,0.000004423465,0.00004971295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4587085,"threshold_uncertainty_score":0.5180971,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009928134","doi":"10.1016/j.bbaexp.2007.01.014","title":"In vivo footprinting analysis of the Glypican 3 (GPC3) promoter region in neuroblastoma cells","year":2007,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Neuroblastoma Research and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université Laval; Hôpital Saint-François d'Assise; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Chromatin; Footprinting; Biology; Molecular biology; Transcription factor; Promoter; Pediatric cancer; Chromatin immunoprecipitation; Neuroblastoma; Histone; Glypican 3; Transcription (linguistics); DNA-binding protein; Gene; Cell culture; Gene expression; Cell biology; Genetics; Cancer","authors":[{"name":"Gino Boily","is_ca":true},{"name":"Stéphane G. Ouellet","is_ca":true},{"name":"Sylvie Langlois","is_ca":true},{"name":"Mathieu Larivière","is_ca":true},{"name":"Régen Drouin","is_ca":true},{"name":"Daniel Sinnett","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00914940048932639,"gpt":0.2658650878962328,"spread":0.2567156874069064,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001149202,0.0002501134,0.0004497168,0.0005083128,0.00007052824,0.00002100111,0.0001786579,0.0001276717,0.00001411648],"category_scores_gemma":[0.00003317004,0.0001591104,0.0001730557,0.001168326,0.0001349926,0.00009111116,0.0002182428,0.0003414082,4.152095e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004244102,"about_ca_system_score_gemma":0.00004851877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000838366,"about_ca_topic_score_gemma":0.00008364201,"domain_scores_codex":[0.9982127,0.0001205911,0.0003952354,0.0005038408,0.0003651808,0.0004024307],"domain_scores_gemma":[0.9990336,0.00007499997,0.0001958577,0.0005053756,0.00004517815,0.0001449857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006615943,0.0001757316,0.001512546,0.00005353534,0.00009731311,0.0000621959,0.0004505768,0.000007350233,0.9964705,0.00000560034,0.00006476404,0.0004383435],"study_design_scores_gemma":[0.0008611915,0.0001955379,0.2560595,0.0001159721,0.0001138358,0.00001264845,0.0000303973,0.00007633345,0.74236,0.00005424731,0.00002466893,0.0000957308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986941,0.00001622203,0.000008513131,0.0006034701,0.00007222508,0.0004620886,0.00001782268,0.00001511866,0.0001104348],"genre_scores_gemma":[0.9992559,0.00004038767,0.0003263122,0.0001996995,0.00006489133,0.00000569862,0.000008557872,0.00002440968,0.00007414303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2545469,"threshold_uncertainty_score":0.6488333,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2042464648","doi":"10.1016/j.bbaexp.2005.02.006","title":"Identification of a novel Wee1 isoform","year":2005,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Joseph’s Healthcare Hamilton; St. Joseph's Hospital; McMaster University","funders":"Hong Kong University of Science and Technology","keywords":"Wee1; Mitosis; Gene isoform; Biology; Kinase; Western blot; Molecular biology; Cell biology; Recombinant DNA; Cell cycle; Cell; Biochemistry; Cyclin-dependent kinase 1; Gene","authors":[{"name":"Yaping Yu","is_ca":false},{"name":"Biao Chen","is_ca":true},{"name":"Zheng Chen","is_ca":true},{"name":"Cathy Fan","is_ca":true},{"name":"Yifan Han","is_ca":false},{"name":"Jing Zhang","is_ca":true},{"name":"Lizhi He","is_ca":true},{"name":"Alistair J. Ingram","is_ca":true},{"name":"Anil Kapoor","is_ca":true},{"name":"Jerry H. Wang","is_ca":false},{"name":"Damu Tang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005928989670234823,"gpt":0.2384368955922209,"spread":0.2325079059219861,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007419554,0.0002451907,0.0002146702,0.00006476881,0.0001023766,0.00003515468,0.0002325421,0.0002433798,0.000009519057],"category_scores_gemma":[0.00001810016,0.000207098,0.000109206,0.00009350755,0.0001042839,0.00001896873,0.0001896917,0.0001145848,0.00000173701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001004902,"about_ca_system_score_gemma":0.00004603279,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007285238,"about_ca_topic_score_gemma":0.000007293035,"domain_scores_codex":[0.9987609,0.00002900879,0.0003601679,0.0004685043,0.0001526923,0.0002286616],"domain_scores_gemma":[0.9990901,0.000007971958,0.0002597084,0.0004753236,0.00007806706,0.00008878835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001008243,0.00009410195,0.000007327833,0.00003323162,0.00003824278,1.192123e-7,0.0001783549,0.00001783575,0.9975014,0.00004157236,0.0008798697,0.001107145],"study_design_scores_gemma":[0.0005939403,0.0001155514,0.001683872,0.0000289825,0.00003757164,0.00001154986,0.00003657266,0.0002374605,0.9951546,0.00005162621,0.001802482,0.0002458328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978659,0.0002640283,0.0009284228,0.0002929631,0.0001090136,0.0002057341,0.000245884,0.00001569651,0.00007242379],"genre_scores_gemma":[0.9952805,0.0005147773,0.00289538,0.0002484413,0.0004005317,0.000009461008,0.0004519621,0.00003099661,0.0001679725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002585356,"threshold_uncertainty_score":0.8445209,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046809689","doi":"10.1016/s0167-4781(00)00239-6","title":"Presence of new alternative exons in human and mouse Fli-1 genes","year":2000,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Exon; Biology; Gene; Exon trapping; Molecular biology; Genetics; Translation (biology); Messenger RNA; Alternative splicing","authors":[{"name":"Corinne Barat","is_ca":false},{"name":"Benoı̂t Barbeau","is_ca":true},{"name":"Olivier Delattre","is_ca":false},{"name":"Éric Rassart","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01293415646846808,"gpt":0.271380819450796,"spread":0.2584466629823279,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002911769,0.0002485964,0.0003798024,0.00009216678,0.0000777622,0.0000263339,0.00009201225,0.0001125494,0.00009309627],"category_scores_gemma":[0.000008086529,0.0001758954,0.00006166944,0.0001099077,0.0001186766,0.0001137915,0.00008140034,0.0001003503,0.000001135676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002319962,"about_ca_system_score_gemma":0.00004918255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003666807,"about_ca_topic_score_gemma":0.00001528086,"domain_scores_codex":[0.9988534,0.00004690191,0.000253857,0.0004326012,0.0002026397,0.0002105505],"domain_scores_gemma":[0.9993499,0.00003777438,0.0001027949,0.0003055519,0.00002547571,0.0001784913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002229451,0.0001646258,0.0006308929,0.00004401312,0.00005111084,0.00001234771,0.001314383,0.00000437755,0.9905625,0.00003202282,0.0005271651,0.006433638],"study_design_scores_gemma":[0.001974018,0.0003073172,0.07175523,0.0001876884,0.00006307092,0.00001791048,0.00005088332,0.00003223813,0.9248508,0.0004068094,0.0001978792,0.0001561889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982013,0.0006862012,0.000001222387,0.0004395822,0.00003273176,0.0003364377,0.0000841459,0.00002048053,0.0001979133],"genre_scores_gemma":[0.9964516,0.001853903,0.0009593712,0.0001288244,0.0001509953,0.00001174913,0.00008117752,0.0000200681,0.0003423262],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07112434,"threshold_uncertainty_score":0.7172805,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}