{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":34,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":34,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"c64dd7063d94","filters":{"venue":"Biomarker Research"}},"results":[{"id":"W4408472668","doi":"10.1186/s40364-025-00758-2","title":"Integrating artificial intelligence in drug discovery and early drug development: a transformative approach","year":2025,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre","funders":"CRIS Cancer Foundation; Ministerio de Ciencia e Innovación","keywords":"Computer science; Drug development; Drug discovery; Data science; Identification (biology); Artificial intelligence; Transformative learning; Risk analysis (engineering); Medicine; Drug; Bioinformatics; Psychology","retraction":null,"screen_n_in":null,"score":{"opus":0.189643757778319,"gpt":0.4537753084490421,"spread":0.2641315506707231,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.009261435,0.0005161342,0.001194783,0.002406629,0.0003383801,0.001391804,0.002204223,0.0001881579,0.000004790496],"category_scores_gemma":[0.0006655769,0.0004260099,0.0002266262,0.00472499,0.0003059835,0.001347815,0.001614017,0.001368867,0.00002246226],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004955703,"about_ca_system_score_gemma":0.002780002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003769137,"about_ca_topic_score_gemma":0.0001171149,"domain_scores_codex":[0.991713,0.003636739,0.001343655,0.001262524,0.001212816,0.000831288],"domain_scores_gemma":[0.9940958,0.004757834,0.000180389,0.0006054583,0.0002080931,0.0001524007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000091954,0.0001041713,0.000004128125,0.007135898,0.00005563808,0.00001828264,0.004216064,0.000007625537,3.380389e-7,0.04115777,0.00006776416,0.9472231],"study_design_scores_gemma":[0.0005973371,0.0001425647,0.0006882643,0.1146297,0.0001533225,0.0001629171,0.005300613,0.1173536,0.000204725,0.07297523,0.6827261,0.005065538],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004857023,0.5931807,0.4025225,0.00005564654,0.0001284487,0.001235102,0.0000119724,0.00004206384,0.002774937],"genre_scores_gemma":[0.0004485319,0.8348006,0.1625083,0.00001362887,0.0000646203,0.0009497579,0.000057226,0.00004638813,0.001110919],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9421576,"threshold_uncertainty_score":0.9998192,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388774038","doi":"10.1186/s40364-023-00540-2","title":"Extracellular vesicle-based liquid biopsy biomarkers and their application in precision immuno-oncology","year":2023,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dr. Georges-L.-Dumont University Hospital Centre; Beatrice Hunter Cancer Research Institute; Université de Moncton; Atlantic Cancer Research Institute","funders":"Mitacs; Fondation de la recherche en santé du Nouveau-Brunswick","keywords":"Liquid biopsy; Tumor microenvironment; Extracellular vesicles; Biomarker; Extracellular vesicle; Circulating tumor cell; Cancer biomarkers; Medicine; Biomarker discovery; Microvesicles; Computational biology; Bioinformatics; Immune system; Cancer; Biology; Proteomics; Internal medicine; Immunology; Metastasis; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.1179422531171736,"gpt":0.4297581589310074,"spread":0.3118159058138338,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.005315476,0.0006148268,0.001000423,0.001038264,0.0002027603,0.00009951,0.001082773,0.001305704,0.00002643026],"category_scores_gemma":[0.0006911894,0.0005288408,0.0004111025,0.001540987,0.0007019602,0.000009425022,0.0009576554,0.0005758849,0.0001525751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003260906,"about_ca_system_score_gemma":0.001156663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001062113,"about_ca_topic_score_gemma":0.00005417978,"domain_scores_codex":[0.9936743,0.002229375,0.001025991,0.001591158,0.0005059954,0.0009731323],"domain_scores_gemma":[0.996913,0.0006119134,0.0002939979,0.00165693,0.0002025446,0.0003216849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000733818,0.0003384995,0.00002920458,0.005011947,0.0002752011,0.0001125137,0.00002115125,5.922615e-7,0.1203876,0.00003936576,0.001211808,0.8718383],"study_design_scores_gemma":[0.0007156034,0.0004267516,0.00005010072,0.002207244,0.00006797343,0.00005186736,0.00007998965,0.0002050562,0.002599715,0.00005869438,0.9929562,0.0005808158],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004890372,0.9912007,0.0005632789,0.00007432167,0.0001377134,0.00261376,0.0001470777,0.00005326668,0.0003194391],"genre_scores_gemma":[0.002935081,0.9928303,0.0003400511,0.000009005235,0.0001795862,0.001327186,0.001532217,0.0002301293,0.0006164414],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9917444,"threshold_uncertainty_score":0.9999908,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2904466277","doi":"10.1186/s40364-018-0148-5","title":"EZH2 as a therapeutic target for multiple myeloma and other haematological malignancies","year":2018,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Cancer Research Society","keywords":"EZH2; Medicine; Multiple myeloma; Clinical significance; Cancer research; Clinical trial; Bortezomib; Drug resistance; Oncology; Histone; Bioinformatics; Immunology; Internal medicine; Biology; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.2575034138263133,"gpt":0.4690893041265918,"spread":0.2115858903002786,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001666244,0.0003080643,0.0005932542,0.0001650642,0.0002249767,0.0000978719,0.0003425557,0.000679451,0.00006148681],"category_scores_gemma":[0.0006190809,0.0002250918,0.0002715438,0.0001924162,0.0004226071,0.000002182048,0.0003002709,0.0001528125,0.00005184577],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002207789,"about_ca_system_score_gemma":0.0002446571,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001722041,"about_ca_topic_score_gemma":0.00001602469,"domain_scores_codex":[0.997501,0.0005467289,0.0003747524,0.0007380529,0.0002922033,0.00054733],"domain_scores_gemma":[0.9986889,0.0002880123,0.0001168312,0.0005149108,0.0002530158,0.0001383132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002699558,0.0001641785,0.0003844273,0.006885605,0.0006937796,0.00001217135,0.00004098169,5.35128e-8,0.01089293,0.0005063795,0.005702978,0.9744465],"study_design_scores_gemma":[0.0002529107,0.0005490648,0.00004285237,0.0004771274,0.00005384821,0.00001989082,0.00001231209,0.00001823398,0.002674681,0.0005804391,0.9950417,0.0002768828],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001317971,0.9954312,0.0006066289,0.00003300244,0.000102695,0.001448812,0.0001274543,0.00001179252,0.0009203962],"genre_scores_gemma":[0.00106362,0.9942763,0.001294264,0.00003352392,0.0003176202,0.0005920754,0.0002422542,0.00008412242,0.002096264],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9893388,"threshold_uncertainty_score":0.9178976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963188318","doi":"10.1186/s40364-015-0041-4","title":"Paediatric acute myeloid leukaemia with the t(7;12)(q36;p13) rearrangement: a review of the biological and clinical management aspects","year":2015,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital","funders":"","keywords":"Myeloid leukaemia; Medicine; Disease; Abnormality; Disease entity; Myeloid; Chromosomal translocation; Chromosomal Abnormality; Bioinformatics; Pediatrics; Pathology; Chromosome; Immunology; Karyotype; Biology; Gene; Genetics; Psychiatry","retraction":null,"screen_n_in":null,"score":{"opus":0.2531841610977899,"gpt":0.4788769292950448,"spread":0.2256927681972549,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.02102715,0.0007132649,0.002947885,0.0006042055,0.0003389877,0.00008730181,0.002009499,0.0006699088,0.000380123],"category_scores_gemma":[0.001237859,0.0002836292,0.0009262684,0.003642703,0.002746443,0.00006665725,0.003306765,0.003142151,0.0002556947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009514191,"about_ca_system_score_gemma":0.002778726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004003136,"about_ca_topic_score_gemma":0.00001306518,"domain_scores_codex":[0.9869096,0.005376813,0.001542656,0.001365607,0.003496089,0.00130923],"domain_scores_gemma":[0.9931591,0.001852249,0.0005712022,0.002828396,0.0009584831,0.0006305298],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000362773,0.0001768539,0.0002077536,0.05928485,0.002358519,0.0003766278,0.00001742782,2.126072e-9,0.000001417743,0.0001369743,0.1879329,0.7491439],"study_design_scores_gemma":[0.001372136,0.0008019651,0.001390077,0.0471709,0.002665517,0.0004870305,0.00005764208,0.000003049973,7.408112e-7,0.00002997128,0.9457259,0.0002950286],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006923586,0.959979,0.00000344801,0.004344686,0.0001217906,0.009660902,0.00008044894,0.00003532413,0.02570515],"genre_scores_gemma":[0.00003110127,0.9918994,0.0002266354,0.0003339947,0.0004165717,0.0007320003,0.0001210678,0.0001149656,0.006124303],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7577931,"threshold_uncertainty_score":0.9999675,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4386091349","doi":"10.1186/s40364-023-00513-5","title":"Biomarkers for immune checkpoint inhibition in sarcomas – are we close to clinical implementation?","year":2023,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Medical Research Council; Medical Research Council; Terry Fox Foundation; Duke-NUS Medical School","keywords":"Medicine; Immunotherapy; Biomarker; Immune system; Cancer; Oncology; Cancer research; Immune checkpoint; Cancer immunotherapy; Immunology; Internal medicine; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.4858021401381025,"gpt":0.5969145511737669,"spread":0.1111124110356644,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.01401094,0.0006544865,0.002562663,0.003033028,0.0002455807,0.0001433514,0.0004013647,0.0008054038,0.0004794965],"category_scores_gemma":[0.0007757471,0.000550076,0.001815695,0.004487468,0.0003656857,0.0001069513,0.0004525242,0.0009590293,0.0004376505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001437906,"about_ca_system_score_gemma":0.001730505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006237194,"about_ca_topic_score_gemma":0.000709224,"domain_scores_codex":[0.9912621,0.00140319,0.003160521,0.00147769,0.001257267,0.001439225],"domain_scores_gemma":[0.9955758,0.001750101,0.0005249276,0.001210385,0.0004677173,0.0004710952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003095942,0.0003907041,0.0002345408,0.01972673,0.001316667,0.0002480533,0.00008882038,8.358035e-9,0.000162137,0.00002143534,0.05092177,0.9237932],"study_design_scores_gemma":[0.004792873,0.000839464,0.003758547,0.02790682,0.0002822285,0.00007072005,0.0006581738,0.000005067569,0.00007425666,0.0000991929,0.9609719,0.0005407423],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005960339,0.9804138,0.00002312288,0.004481977,0.0008072898,0.01261609,0.0006568462,0.0001440518,0.0002608205],"genre_scores_gemma":[0.00008773691,0.9911065,0.0003952193,0.0001072275,0.000548904,0.004175954,0.001351814,0.0002619802,0.001964665],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9232525,"threshold_uncertainty_score":0.9996951,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099844273","doi":"10.1186/2050-7771-2-10","title":"Micro-RNAs, New performers in multiple myeloma bone marrow microenvironment","year":2014,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Multiple Myeloma Research and Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University Health Network; University of Toronto","funders":"Cancer Research Society","keywords":"Stromal cell; Multiple myeloma; Bone marrow; Microvesicles; microRNA; Context (archaeology); Tumor microenvironment; Cancer research; Medicine; Secretion; Biology; Immunology; Gene; Tumor cells; Genetics; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.1701017107470398,"gpt":0.4199784393830314,"spread":0.2498767286359916,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.003054863,0.0009012683,0.002856714,0.002355984,0.0002798793,0.0001376444,0.0007012917,0.0007958762,0.001860864],"category_scores_gemma":[0.0009580762,0.0006911424,0.0009125639,0.001436979,0.0005452289,0.0001041388,0.0007375537,0.001982035,0.004612753],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002214035,"about_ca_system_score_gemma":0.001829114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001101394,"about_ca_topic_score_gemma":0.0001821207,"domain_scores_codex":[0.9911473,0.001364006,0.001290443,0.001567432,0.00218499,0.002445772],"domain_scores_gemma":[0.9953981,0.00104719,0.0002145253,0.001674267,0.0001260305,0.001539856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006195757,0.0005896593,0.002671525,0.01458157,0.0005613117,0.001373743,0.00003713661,3.329678e-8,0.0003727959,0.000003715704,0.02615442,0.9530345],"study_design_scores_gemma":[0.004588138,0.0004432857,0.005370629,0.01279989,0.0001988434,0.0004127354,0.0000317277,0.00005356221,0.00008704382,0.000007815633,0.9755026,0.0005037227],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008573006,0.9899886,0.000009301388,0.0003523376,0.0001226169,0.005114544,0.00009571186,0.00005306338,0.003406515],"genre_scores_gemma":[0.0005256516,0.9706781,0.001271612,0.00003451698,0.0003525669,0.0006377926,0.001011703,0.0002367151,0.02525135],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9525308,"threshold_uncertainty_score":0.999554,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410485030","doi":"10.1186/s40364-025-00784-0","title":"The progress and prospects of targeting the adenosine pathway in cancer immunotherapy","year":2025,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Adenosine and Purinergic Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SKiN Health","funders":"National Key Research and Development Program of China; Xiangya Hospital, Central South University; Natural Science Foundation of Hunan Province; China Postdoctoral Science Foundation; Natural Science Foundation for Distinguished Young Scholars of Hunan Province; National Natural Science Foundation of China","keywords":"Adenosinergic; Medicine; Immunotherapy; Tumor microenvironment; Adenosine; Cancer immunotherapy; Adenosine receptor; Clinical trial; Cancer; Immune system; Cancer research; Bioinformatics; Oncology; Immunology; Internal medicine; Biology; Receptor; Agonist","retraction":null,"screen_n_in":null,"score":{"opus":0.0687544667880343,"gpt":0.423567058407508,"spread":0.3548125916194736,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002081522,0.0002054484,0.0004032128,0.0001160254,0.0001990628,0.00006549648,0.0005645213,0.0002247789,0.000008164767],"category_scores_gemma":[0.000167345,0.0001035373,0.0001307129,0.0005802578,0.0004416836,0.00000205003,0.0003981924,0.0003444809,5.419911e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002879674,"about_ca_system_score_gemma":0.0006344125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001092066,"about_ca_topic_score_gemma":0.00002240537,"domain_scores_codex":[0.9978737,0.0006538365,0.0004098737,0.0003693867,0.0002944666,0.0003987688],"domain_scores_gemma":[0.9989101,0.0003154326,0.0001399191,0.0004375438,0.0001655039,0.00003146006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001069827,0.00005933216,0.0002899971,0.005020436,0.000300772,0.000008515864,0.00004797697,2.136864e-7,0.000843172,0.0001504178,0.01282474,0.9803475],"study_design_scores_gemma":[0.0001798679,0.00006592134,0.00006208278,0.003153223,0.00001752571,0.00000465022,0.00003612016,0.000003217799,0.0007484054,0.00002148283,0.9955873,0.0001202148],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003818801,0.9979684,0.000002500919,0.0002352336,0.00007512479,0.00108496,0.00002066144,0.000004866742,0.0002263581],"genre_scores_gemma":[0.001479437,0.9962407,0.00001952334,0.000009305331,0.0001642758,0.0005809357,0.00003509536,0.00003756107,0.001433153],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9827626,"threshold_uncertainty_score":0.4222129,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2035479373","doi":"10.1186/2050-7771-1-16","title":"Integrin α1 subunit is up-regulated in colorectal cancer","year":2013,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Colorectal cancer; Integrin; Cancer research; Cell growth; Crypt; Immunohistochemistry; Pathology; Biology; Medicine; Cancer; Internal medicine; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.1169938907393811,"gpt":0.4300020560786023,"spread":0.3130081653392212,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001576987,0.0001982191,0.0003324174,0.0008850622,0.0001183251,0.000107359,0.0004015828,0.0002553681,0.03183679],"category_scores_gemma":[0.0005923489,0.0001611561,0.00010472,0.002452939,0.0004466747,0.0001230028,0.000460764,0.001067107,0.003251847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006879955,"about_ca_system_score_gemma":0.0005379461,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01570953,"about_ca_topic_score_gemma":0.0007771419,"domain_scores_codex":[0.9956794,0.0005134809,0.0003867753,0.0005899371,0.001681814,0.001148584],"domain_scores_gemma":[0.9976562,0.0003359229,0.00003103401,0.0004984119,0.0009698759,0.0005086009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009527991,0.0002944683,0.08269637,0.0001330015,0.00007892009,0.0001834033,0.0004256034,2.487079e-7,0.7109707,0.00002543221,0.1263884,0.07785065],"study_design_scores_gemma":[0.002518601,0.000336706,0.7555902,0.0002367406,0.000007284493,0.00003957967,0.0005058487,0.004548216,0.2080689,0.00011752,0.02780498,0.0002254036],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9774124,0.0006850383,0.0000032634,0.006973152,0.00009531419,0.001665322,0.00001059199,0.00005291731,0.01310202],"genre_scores_gemma":[0.967708,0.0002803886,0.0000870658,0.00016339,0.00006969036,0.0005557993,0.00003119845,0.00005847,0.03104603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6728938,"threshold_uncertainty_score":0.9975243,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4362733267","doi":"10.1186/s40364-023-00471-y","title":"Elevated ZNF704 expression is associated with poor prognosis of uveal melanoma and promotes cancer cell growth by regulating AKT/mTOR signaling","year":2023,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Beijing Dongcheng District People's Government; Beijing Municipal Administration of Hospitals; National Natural Science Foundation of China","keywords":"PI3K/AKT/mTOR pathway; Protein kinase B; Medicine; Melanoma; Cancer research; Cell growth; Cancer; Signal transduction; Internal medicine; Oncology; Pathology; Cell biology; Biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.06472105310648489,"gpt":0.365275560342487,"spread":0.3005545072360021,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009681477,0.0001492195,0.0003035499,0.0001762923,0.0002137741,0.00001900891,0.00009725179,0.0001929507,0.0001787431],"category_scores_gemma":[0.0003173067,0.0001056522,0.00004295768,0.000808542,0.0001969217,0.00008158158,0.0001408228,0.0001855593,0.000007171446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001412367,"about_ca_system_score_gemma":0.0001758581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005923727,"about_ca_topic_score_gemma":0.0000316687,"domain_scores_codex":[0.9979609,0.0003056067,0.0002336166,0.0003856492,0.0006410228,0.000473227],"domain_scores_gemma":[0.9988499,0.0003350195,0.0001054779,0.0001611087,0.000394641,0.0001538329],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006022125,0.0003105805,0.415803,0.0001802288,0.0002816407,0.00008216986,0.0002908644,3.77896e-8,0.5749952,9.931495e-7,0.006325014,0.00112809],"study_design_scores_gemma":[0.003161198,0.001060733,0.1379444,0.0007349543,0.00009446684,0.00000574867,0.0002599935,0.0004676607,0.8560694,0.00002608397,0.00006492929,0.000110465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996826,0.0008073898,0.000001675715,0.0009745652,0.00001897783,0.000847756,0.00006481182,0.00006865929,0.0003901725],"genre_scores_gemma":[0.997582,0.00007166759,0.0002344756,0.00001931601,0.00002056195,0.0001695427,0.0001394668,0.00003659057,0.001726449],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2810743,"threshold_uncertainty_score":0.4308371,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142281918","doi":"10.1186/s40364-014-0027-7","title":"RiGoR: reporting guidelines to address common sources of bias in risk model development","year":2015,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Statistical Methods in Clinical Trials","field":"Mathematics","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"London Health Sciences Centre","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"CLARITY; Transparency (behavior); Computer science; Data science; Risk analysis (engineering); Publication bias; Rigour; Model selection; Selection bias; Conflation; Medicine; Meta-analysis; Artificial intelligence; Computer security; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.970106049984621,"gpt":0.7255547746195153,"spread":0.2445512753651057,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.09140667,0.0001688699,0.0007818723,0.0004456369,0.00009144775,0.00004480911,0.0005548276,0.000178704,0.00005273895],"category_scores_gemma":[0.645482,0.0001332263,0.0000844778,0.0008869593,0.0001995362,0.00004506282,0.0007324172,0.0004062861,0.00003619619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001559231,"about_ca_system_score_gemma":0.0004817573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004965622,"about_ca_topic_score_gemma":0.0002788407,"domain_scores_codex":[0.990083,0.002949514,0.004007456,0.0005003921,0.001844567,0.0006151084],"domain_scores_gemma":[0.958905,0.03678434,0.00117854,0.0009112938,0.001741624,0.0004791847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.003478387,0.002016668,0.3184555,0.001199458,0.0004124092,0.0003551702,0.007946449,0.001003768,0.002584406,0.01564664,0.1727618,0.4741393],"study_design_scores_gemma":[0.001883993,0.0002161694,0.01555471,0.0009009333,0.00002785095,0.000008746885,0.001021796,0.03697436,0.01580115,0.9234859,0.003661676,0.0004626857],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9550984,0.000112977,0.03767639,0.0005719,0.0001586147,0.001058221,0.00004381128,0.00005550984,0.005224168],"genre_scores_gemma":[0.2130049,0.00000968589,0.7862636,0.0000276253,0.00006537928,0.00009768302,0.000001193009,0.00003345954,0.0004963808],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9078393,"threshold_uncertainty_score":0.9355881,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140609887","doi":"10.1186/s40364-015-0031-6","title":"A genome wide association study on Newfoundland colorectal cancer patients’ survival outcomes","year":2015,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Memorial University of Newfoundland; Princess Margaret Cancer Centre; Public Health Ontario; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research; University of Toronto","keywords":"Single-nucleotide polymorphism; Colorectal cancer; Medicine; Microsatellite instability; Oncology; Internal medicine; Proportional hazards model; SNP; Genome-wide association study; Cohort; Genetic association; Genotype; Cancer; Genetics; Biology; Microsatellite; Gene; Allele","retraction":null,"screen_n_in":null,"score":{"opus":0.1005178699454992,"gpt":0.3980827289943921,"spread":0.297564859048893,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003183646,0.0001439837,0.0002314137,0.0001133325,0.0001654223,0.00004315052,0.0002375059,0.0002008572,0.00003469631],"category_scores_gemma":[0.003864231,0.0001216904,0.00007292883,0.0002289882,0.00005105906,0.000003552607,0.0002070197,0.0001624886,0.00008749714],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004237367,"about_ca_system_score_gemma":0.0002305259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009903653,"about_ca_topic_score_gemma":0.002064009,"domain_scores_codex":[0.9971014,0.00103958,0.0002615604,0.0004196107,0.0006465014,0.000531308],"domain_scores_gemma":[0.9984834,0.0003105028,0.0001066685,0.0002507276,0.000668079,0.0001806185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001817867,0.0004826602,0.9870344,0.000001809326,0.0002035639,0.000001331394,0.0001304677,0.00001132027,0.001849173,0.0000026661,0.009919952,0.0001808878],"study_design_scores_gemma":[0.001539009,0.001059492,0.9842815,0.000001790873,0.00001120115,8.994913e-8,0.0003115858,0.00001242197,0.00006091129,0.00003727192,0.01254929,0.000135422],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946105,0.00009328561,0.00001630644,0.001009217,0.0003711325,0.0005709527,0.00004367613,0.00001119238,0.003273725],"genre_scores_gemma":[0.9958439,0.00002785468,0.00002983157,0.0001246825,0.0001476782,0.0001655106,0.0001455392,0.00002247613,0.003492516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002752869,"threshold_uncertainty_score":0.496239,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4317884676","doi":"10.1186/s40364-023-00455-y","title":"Radiogenomic association of deep MR imaging features with genomic profiles and clinical characteristics in breast cancer","year":2023,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Radiomics and Machine Learning in Medical Imaging","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"CancerCare Manitoba; Research Institute in Oncology and Hematology; Western University; University of Manitoba","funders":"University of Manitoba; Canada Research Chairs; CancerCare Manitoba Foundation; Manitoba Medical Service Foundation","keywords":"Medicine; Breast cancer; Magnetic resonance imaging; Cancer; Estrogen receptor; Radiomics; Oncology; Internal medicine; Computational biology; Pathology; Bioinformatics; Radiology; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.03291726753668087,"gpt":0.4004187287449019,"spread":0.367501461208221,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003793761,0.00009898337,0.0003284382,0.0004256011,0.00007308091,0.00003686733,0.0001029611,0.00008147612,0.00005456859],"category_scores_gemma":[0.0005525518,0.00007683852,0.00004391257,0.0005513304,0.000238309,0.00004412212,0.0001056607,0.0005846113,0.00000957927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002567028,"about_ca_system_score_gemma":0.0002099937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004893973,"about_ca_topic_score_gemma":0.00003493419,"domain_scores_codex":[0.9981751,0.0002860064,0.0003451589,0.0002984294,0.0004776584,0.000417611],"domain_scores_gemma":[0.9989231,0.0004741604,0.0001093822,0.0001716559,0.0001693086,0.0001523489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000399339,0.00005344202,0.9092048,0.0001290768,0.00008696551,0.00009158235,0.0001324139,8.864233e-7,0.0150719,0.00001281521,0.002233468,0.07258327],"study_design_scores_gemma":[0.001360813,0.00004176638,0.9802082,0.0001985266,0.00002895407,0.00005954389,0.0001178048,0.01708688,0.00005964572,0.00001480712,0.0007458198,0.00007719218],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989022,0.0004597298,0.00001407075,0.009747559,0.00008969167,0.0003388482,0.00002584141,0.0000298622,0.0002723803],"genre_scores_gemma":[0.997343,0.001476442,0.0002712048,0.0000926416,0.0001897021,0.00002673951,0.00003954142,0.00003171372,0.000529015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07250608,"threshold_uncertainty_score":0.3133384,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3158360527","doi":"10.1186/s40364-021-00286-9","title":"Pathophysiological roles of myristoylated alanine-rich C-kinase substrate (MARCKS) in hematological malignancies","year":2021,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Cancer Research Society","keywords":"MARCKS; Myristoylation; Cell biology; Biology; Carcinogenesis; Cancer research; Kinase; Protein kinase C; Phosphorylation; Medicine; Immunology; Cancer; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.119957225002756,"gpt":0.3951570808364451,"spread":0.2751998558336891,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001849644,0.0004295042,0.001400445,0.0003858473,0.00009752725,0.00004611359,0.0005376104,0.0009928566,0.0001673268],"category_scores_gemma":[0.0007031513,0.0003301943,0.0004798626,0.001099297,0.0004224762,0.00000435824,0.0005849822,0.0005232533,0.00002315614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005783656,"about_ca_system_score_gemma":0.0005918443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001878682,"about_ca_topic_score_gemma":0.00002223676,"domain_scores_codex":[0.9949871,0.001894301,0.0009302797,0.0009342926,0.000563541,0.0006904767],"domain_scores_gemma":[0.9983523,0.0001597151,0.0002470428,0.000706085,0.0003760127,0.0001587882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004980984,0.001504577,0.000395683,0.02001498,0.0006092579,0.002451678,0.00005819915,0.00001062599,0.3166226,0.001383194,0.004249771,0.6522014],"study_design_scores_gemma":[0.0009246372,0.0004853474,0.0005363785,0.01158267,0.000107779,0.0002154321,0.0001276986,0.00004929233,0.02849621,0.0001952141,0.9561956,0.001083749],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02699236,0.971704,0.0000225268,0.0000206677,0.00004423391,0.0007631274,0.00007844551,0.00001495229,0.0003596822],"genre_scores_gemma":[0.02542698,0.9724559,0.000236828,0.000009969804,0.00008592767,0.0002400651,0.001173886,0.00004924314,0.000321234],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9519458,"threshold_uncertainty_score":0.999915,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3172469214","doi":"10.1186/s40364-021-00296-7","title":"SMAD1 as a biomarker and potential therapeutic target in drug-resistant multiple myeloma","year":2021,"lang":"en","type":"article","venue":"Biomarker Research","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; University of Toronto","funders":"Leukemia and Lymphoma Society of Canada; Cancer Research Society","keywords":"Bortezomib; Cancer research; Apoptosis; Downregulation and upregulation; XIAP; Cytotoxicity; Cell culture; Multiple myeloma; Western blot; Medicine; Biology; Chemistry; In vitro; Immunology; Programmed cell death; Caspase; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04385448367354124,"gpt":0.3466440937266665,"spread":0.3027896100531253,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009878303,0.0002011732,0.000181998,0.0002008536,0.0001916598,0.0001267929,0.0002887725,0.0001809953,0.0002917223],"category_scores_gemma":[0.0005277215,0.0001958548,0.00009508645,0.0004383542,0.0003214089,0.000007593571,0.0004942174,0.0001726824,0.0000435389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003914453,"about_ca_system_score_gemma":0.0004692874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000175804,"about_ca_topic_score_gemma":0.0002388834,"domain_scores_codex":[0.9971209,0.0006884648,0.0002875334,0.0007357642,0.0005174556,0.0006498713],"domain_scores_gemma":[0.9988021,0.0001099638,0.00003863189,0.0005654631,0.0002648353,0.0002189638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008992574,0.0002612486,0.01694852,0.00006457201,0.0001167782,0.0003175616,0.00005872203,0.000002125344,0.9724466,0.0000271571,0.003318617,0.005538832],"study_design_scores_gemma":[0.002063485,0.000127983,0.3242914,0.00007584361,0.00001589785,0.00006323702,0.0004679128,0.0005274341,0.5959411,0.0003218329,0.07567585,0.0004279891],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9832138,0.01446485,0.00009652942,0.0004017628,0.0000969672,0.0002945632,0.00004041964,0.00001864479,0.001372433],"genre_scores_gemma":[0.99654,0.0001647108,0.0004657903,0.0001108047,0.00008659804,0.00007611149,0.0001847469,0.00004616907,0.002325116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3765055,"threshold_uncertainty_score":0.7986726,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4405012163","doi":"10.1186/s40364-024-00699-2","title":"TRPM channels in human cancers: regulatory mechanism and therapeutic prospects","year":2024,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Ion Channels and Receptors","field":"Neuroscience","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Key Research and Development Program of China; Hubei University; Hubei University of Technology; National Natural Science Foundation of China","keywords":"Medicine; Cancer research; Tumor microenvironment; Transient receptor potential channel; PI3K/AKT/mTOR pathway; Wnt signaling pathway; MAPK/ERK pathway; Protein kinase B; Signal transduction; Cell biology; Internal medicine; Biology; Receptor; Tumor cells","retraction":null,"screen_n_in":null,"score":{"opus":0.3262019984690882,"gpt":0.4748873290405573,"spread":0.1486853305714692,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002194859,0.0004812483,0.0009975146,0.001500137,0.0003335623,0.0003368526,0.0006724373,0.0005118635,0.0001974008],"category_scores_gemma":[0.0001239037,0.0003341608,0.0002456574,0.001995804,0.0004858672,0.00008077046,0.0005630752,0.001224048,0.0002100264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006521927,"about_ca_system_score_gemma":0.0005833295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001304339,"about_ca_topic_score_gemma":0.00002568073,"domain_scores_codex":[0.9948717,0.001146421,0.0005494685,0.001389135,0.001051231,0.0009920362],"domain_scores_gemma":[0.9988983,0.0002980665,0.00009840324,0.0004339667,0.00005417012,0.0002170733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003019747,0.0001640036,4.898109e-7,0.03698946,0.0001098664,0.0006075982,0.0008019013,2.401316e-7,0.007736567,0.03828827,0.00563759,0.9096338],"study_design_scores_gemma":[0.0002613458,0.0001760394,0.000001325402,0.01464387,0.00007699053,0.000092979,0.00006438646,0.0001213218,0.003040474,0.008922203,0.9719777,0.000621388],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005379727,0.9942967,8.55073e-7,0.0001000542,0.001261556,0.002120499,0.00003295998,0.00008989203,0.001559503],"genre_scores_gemma":[0.01168099,0.9769343,0.00000303709,0.00002615332,0.000377747,0.0006291024,0.000007141698,0.0001398637,0.01020167],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9663401,"threshold_uncertainty_score":0.9999111,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402499383","doi":"10.1186/s40364-024-00634-5","title":"Updates on CAR T cell therapy in multiple myeloma","year":2024,"lang":"en","type":"review","venue":"Biomarker Research","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Chimeric antigen receptor; Medicine; Cytokine release syndrome; Immunotherapy; Multiple myeloma; T cell; Cancer research; Immunology; Cancer; Oncology; Internal medicine; Immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.3086141038793038,"gpt":0.48950730688676,"spread":0.1808932030074563,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.004987984,0.0007552754,0.002139741,0.003788889,0.0001435254,0.0002345965,0.0009191243,0.0008890493,0.005977034],"category_scores_gemma":[0.0003919663,0.0005169226,0.0009383381,0.003862229,0.0004525546,0.00005688611,0.0005052934,0.003637613,0.006404233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001283526,"about_ca_system_score_gemma":0.001820703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004423072,"about_ca_topic_score_gemma":0.00006438211,"domain_scores_codex":[0.9915442,0.00176086,0.000912642,0.001535483,0.002574035,0.001672821],"domain_scores_gemma":[0.9954907,0.001806234,0.00008037555,0.001808691,0.0003066749,0.0005073699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006348589,0.0005118927,0.00008556058,0.0175483,0.000360267,0.001629592,0.00008751011,2.157521e-8,0.001188988,0.00002040629,0.04061034,0.9373223],"study_design_scores_gemma":[0.001386358,0.0008413785,0.0001080897,0.01314031,0.00008386167,0.00007756877,0.00005056851,0.00002879319,0.0003425175,0.0000228656,0.9835063,0.0004113591],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007885154,0.9705516,2.300009e-7,0.0003106682,0.0002926075,0.004971556,0.0001041117,0.0001183513,0.02286232],"genre_scores_gemma":[0.0003063009,0.9291645,0.00003360127,0.00004311644,0.0004862717,0.001026305,0.0003512574,0.0003512778,0.06823734],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.942896,"threshold_uncertainty_score":0.9997283,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4405728736","doi":"10.1186/s40364-024-00707-5","title":"Decoding burn trauma: biomarkers for early diagnosis of burn-induced pathologies","year":2024,"lang":"en","type":"review","venue":"Biomarker Research","topic":"Burn Injury Management and Outcomes","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Population Health Research Institute; McMaster University; Hamilton Health Sciences","funders":"Canadian Institutes of Health Research; National Institute on Aging; National Institutes of Health","keywords":"Medicine; Generalizability theory; Intensive care medicine; Immune Dysfunction; Disease; Burn injury; Intervention (counseling); Bioinformatics; Pathology; Immune system; Surgery; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.419651299910076,"gpt":0.514740570833479,"spread":0.09508927092340297,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.004540451,0.0006444821,0.002484442,0.002668814,0.0001922847,0.0001845145,0.0007545978,0.0007033147,0.0002434111],"category_scores_gemma":[0.00142434,0.0004459952,0.001702241,0.002159458,0.0003517761,0.0001185226,0.0006335654,0.0008138923,0.0002093272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003375648,"about_ca_system_score_gemma":0.0003531416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009499206,"about_ca_topic_score_gemma":0.00000914317,"domain_scores_codex":[0.9949437,0.0004806554,0.001255787,0.001050135,0.001154751,0.001114979],"domain_scores_gemma":[0.9959896,0.00205793,0.0002638847,0.00103471,0.0004043119,0.0002495308],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001815027,0.0001424508,0.0004472397,0.06865437,0.002010531,0.000240187,0.00008305216,1.452984e-9,0.00001779102,0.0002007033,0.04231232,0.8857099],"study_design_scores_gemma":[0.0007921468,0.0007501729,0.0006937676,0.02426022,0.002651305,0.00003427601,0.0001995729,0.000009371811,0.00009315911,0.0001937012,0.9698651,0.0004572215],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001446302,0.987415,0.00001802008,0.0004938289,0.000744138,0.004946711,0.0001734407,0.0001635613,0.004598956],"genre_scores_gemma":[0.001511549,0.990639,0.0006076469,0.00001565613,0.0002947636,0.002177441,0.0001704147,0.000188075,0.004395432],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9275528,"threshold_uncertainty_score":0.9997992,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411114133","doi":"10.1186/s40364-025-00794-y","title":"RNA epigenetic modifications as dynamic biomarkers in cancer: from mechanisms to clinical translation","year":2025,"lang":"en","type":"review","venue":"Biomarker Research","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SKiN Health","funders":"Central South University; Natural Science Foundation of Hainan Province; National Natural Science Foundation of China","keywords":"RNA; Epigenetics; Computational biology; Translation (biology); RNA methylation; Non-coding RNA; Messenger RNA; Biology; microRNA; Bioinformatics; Gene; Medicine; Genetics; Methyltransferase; Methylation","retraction":null,"screen_n_in":null,"score":{"opus":0.2555185453738961,"gpt":0.5418170648731587,"spread":0.2862985194992626,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001831883,0.000383613,0.0008009581,0.0007801288,0.0001794287,0.00009522894,0.0009926223,0.0008257158,0.0002192454],"category_scores_gemma":[0.0003294075,0.0003661215,0.0004577077,0.001572918,0.0001668226,0.0000054049,0.0002381766,0.0004557021,0.0001515859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002565336,"about_ca_system_score_gemma":0.002144051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001217126,"about_ca_topic_score_gemma":0.001138092,"domain_scores_codex":[0.9951642,0.001302521,0.001060922,0.001381439,0.0004859065,0.0006049896],"domain_scores_gemma":[0.9976945,0.0003084879,0.0001546768,0.001343278,0.0002432448,0.0002558114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007566057,0.0001454583,0.000006953486,0.0007375479,0.0003443859,0.000003606266,0.0000127102,0.000003671045,0.002687912,0.00005640286,0.002499408,0.9934263],"study_design_scores_gemma":[0.0004002862,0.0001291542,0.0003268876,0.002948807,0.0001626357,0.000001439259,0.00003512344,0.000136832,0.000190378,0.0003201099,0.9948943,0.0004540191],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002485431,0.9900479,0.003830418,0.0004503628,0.0004243868,0.002292812,0.0007009237,0.00001725146,0.001987379],"genre_scores_gemma":[0.001680937,0.9909804,0.00125204,0.00005008342,0.0001268267,0.002499437,0.001404357,0.00006814683,0.001937753],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9929723,"threshold_uncertainty_score":0.9998791,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2905527935","doi":"10.1186/s40364-018-0149-4","title":"The orphan nuclear receptor EAR-2 (NR2F6) inhibits hematopoietic cell differentiation and induces myeloid dysplasia in vivo","year":2018,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; Sunnybrook Hospital; University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Government of Ontario; Health Sciences Centre Foundation","keywords":"Bone marrow; Haematopoiesis; Myeloid; HES1; Biology; Stem cell; Immunology; Cancer research; Ex vivo; Pathology; Molecular biology; In vivo; Cell biology; Medicine; Notch signaling pathway; Signal transduction","retraction":null,"screen_n_in":null,"score":{"opus":0.04320740230132695,"gpt":0.336148674331907,"spread":0.2929412720305801,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003261782,0.0002345854,0.0003067301,0.0006240591,0.0006918795,0.0002591182,0.000410467,0.0002798691,0.001111982],"category_scores_gemma":[0.000799508,0.0001626409,0.00006106259,0.001382482,0.001208208,0.0001776536,0.0006213989,0.0009163721,0.0007533529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004720729,"about_ca_system_score_gemma":0.0003858611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003381583,"about_ca_topic_score_gemma":0.0002216341,"domain_scores_codex":[0.9957131,0.000720318,0.0004341041,0.0006398554,0.001403717,0.001088923],"domain_scores_gemma":[0.9976754,0.0006647778,0.00007088602,0.0006765653,0.0005233975,0.0003889727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001809296,0.0002735469,0.01643649,0.000251873,0.00006952164,0.00005250914,0.001803736,1.723969e-8,0.9107268,0.0004218908,0.05639927,0.01175505],"study_design_scores_gemma":[0.009165132,0.002450729,0.2735292,0.0008401767,0.00004728059,0.000217944,0.005399528,0.002154645,0.5665479,0.0006514534,0.1382204,0.000775571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824471,0.0005362252,0.000004637552,0.004537251,0.0001262298,0.001115511,0.000009305494,0.00005613419,0.0111676],"genre_scores_gemma":[0.9921327,0.0007141361,0.0001962424,0.00008894527,0.0002841392,0.00007862804,0.0000112373,0.00007462704,0.006419392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3441789,"threshold_uncertainty_score":0.9998012,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3198017577","doi":"10.1186/s40364-021-00322-8","title":"Circulating extracellular vesicles during pregnancy in women with type 1 diabetes: a secondary analysis of the CONCEPTT trial","year":2021,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Ottawa Hospital; Sinai Health System; University of Ottawa","funders":"Breakthrough T1D Canada; Institute of Circulatory and Respiratory Health; Canadian Institutes of Health Research; University of Ottawa","keywords":"Extracellular vesicles; Medicine; Pregnancy; Type 2 diabetes; Vesicle; Type 1 diabetes; Diabetes mellitus; Obstetrics; Internal medicine; Endocrinology; Gynecology; Cell biology; Chemistry; Biology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.079174924716102,"gpt":0.3450566829944944,"spread":0.2658817582783924,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008899129,0.0001096618,0.0004225992,0.0002842859,0.0001514119,0.00001974389,0.0001482402,0.0000756611,0.0003219286],"category_scores_gemma":[0.0004978139,0.00007340698,0.00009929407,0.003288035,0.000282698,0.00006084134,0.0002091474,0.0003354354,0.000002188827],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001138157,"about_ca_system_score_gemma":0.0003696848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002090195,"about_ca_topic_score_gemma":0.00006715039,"domain_scores_codex":[0.9976747,0.0006286311,0.0003173737,0.0003237262,0.0005884408,0.0004671244],"domain_scores_gemma":[0.9987529,0.0003268927,0.00007093296,0.0005349851,0.0002444676,0.00006982875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01286872,0.0005632472,0.661266,0.00128585,0.004908519,0.0008293911,0.008245863,0.00001611045,0.2806142,0.00006797497,0.00005479647,0.02927935],"study_design_scores_gemma":[0.01269423,0.0002354062,0.9668244,0.002253798,0.0002078989,0.000007541067,0.001963458,0.0001797028,0.01534668,0.00006822055,0.000103697,0.0001149425],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9744431,0.02101601,0.000002040015,0.000192609,0.00004324064,0.0005157116,0.000007928365,0.00001188914,0.003767486],"genre_scores_gemma":[0.99897,0.0001883946,0.00005916374,0.00001065746,0.00002556112,0.0001037104,0.000006435237,0.00001413592,0.0006218995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3055584,"threshold_uncertainty_score":0.3524893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2783774659","doi":"10.1186/s40364-018-0117-z","title":"Development of biomarker combinations for postoperative acute kidney injury via Bayesian model selection in a multicenter cohort study","year":2018,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Acute Kidney Injury Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; London Health Sciences Centre; Western University","funders":"National Center for Advancing Translational Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute","keywords":"Medicine; Acute kidney injury; Creatinine; Biomarker; Cohort; Internal medicine; Clinical endpoint; Cardiology; Clinical trial","retraction":null,"screen_n_in":null,"score":{"opus":0.09829295863597268,"gpt":0.4551466543858589,"spread":0.3568536957498862,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004800939,0.0002603716,0.000487336,0.001710458,0.0004438598,0.00005096334,0.0003500837,0.0002010135,0.0003663716],"category_scores_gemma":[0.001085268,0.0002280815,0.00009650441,0.001969382,0.0004871258,0.0002220855,0.0003367799,0.0004286717,0.00006367022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007985666,"about_ca_system_score_gemma":0.002082274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001572548,"about_ca_topic_score_gemma":0.0001438835,"domain_scores_codex":[0.9955577,0.0004959254,0.0007891377,0.0007500446,0.001502727,0.000904452],"domain_scores_gemma":[0.9961149,0.0001638438,0.00009010178,0.0004577236,0.00263354,0.0005398535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01252925,0.007934253,0.3513983,0.0001862787,0.001686292,0.00002422556,0.005407931,1.503208e-7,0.530544,0.0000767008,0.07973757,0.01047506],"study_design_scores_gemma":[0.01431467,0.004013502,0.6189535,0.0002577089,0.0001523723,0.0000228921,0.000988494,0.2704399,0.08390711,0.0001315011,0.006330787,0.0004875605],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9690085,0.000009423039,0.01460334,0.002379565,0.0001013061,0.01024063,0.0003263164,0.00005996649,0.003270973],"genre_scores_gemma":[0.9775475,0.000005899001,0.01751898,0.0001580507,0.00003596262,0.002069041,0.0002311081,0.00006578669,0.002367667],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4466369,"threshold_uncertainty_score":0.9300894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2758455641","doi":"10.1186/s40364-017-0107-6","title":"Comparative study of two protocols for quantitative image-analysis of serotonin transporter clustering in lymphocytes, a putative biomarker of therapeutic efficacy in major depression","year":2017,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Tryptophan and brain disorders","field":"Neuroscience","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation","keywords":"Serotonin transporter; Biomarker; Serotonin; Depression (economics); Medicine; Cluster analysis; Bioinformatics; Pathology; Internal medicine; Biology; Computer science; Artificial intelligence; Genetics; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.3488978120343236,"gpt":0.5250300460882328,"spread":0.1761322340539092,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002086728,0.000206059,0.000859494,0.001497619,0.0001538531,0.00005164694,0.0008411914,0.00007247386,0.00004260075],"category_scores_gemma":[0.0005952904,0.0001686009,0.0001892583,0.001700264,0.0008292768,0.0002832195,0.0001816469,0.0001541711,0.000001297951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008161504,"about_ca_system_score_gemma":0.0001542211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001476539,"about_ca_topic_score_gemma":0.003237832,"domain_scores_codex":[0.9960896,0.001242918,0.0008182738,0.0006452189,0.0007576765,0.0004463141],"domain_scores_gemma":[0.9966066,0.001905857,0.0004793339,0.0006649543,0.0002817237,0.00006154954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.009278934,0.004186622,0.07035251,0.0002557767,0.0004116996,0.00002019679,0.01584577,0.0001404489,0.8959469,0.0000698721,0.000006961703,0.003484325],"study_design_scores_gemma":[0.009392854,0.0005871516,0.6620211,0.000180979,0.00004512912,3.325619e-7,0.003461079,0.02063471,0.3034335,0.0001095309,0.000004525942,0.000129133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9778748,0.00004577044,0.0005963779,0.00003581501,0.00001266682,0.02099913,0.0001011752,0.000007100408,0.0003271911],"genre_scores_gemma":[0.9940243,0.000003721883,0.0004517835,0.000004865392,0.000001775176,0.005460103,0.00000564809,0.00002006135,0.00002774875],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5925134,"threshold_uncertainty_score":0.6875345,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4392447145","doi":"10.1186/s40364-024-00576-y","title":"Combined TP53 status in tumor-free resection margins and circulating microRNA profiling predicts the risk of locoregional recurrence in head and neck cancer","year":2024,"lang":"en","type":"letter","venue":"Biomarker Research","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Impact","funders":"Alleanza Contro il Cancro; National Cancer Institute; Associazione Italiana per la Ricerca sul Cancro; Ministero della Salute","keywords":"Medicine; Head and neck cancer; microRNA; Head and neck squamous-cell carcinoma; Head and neck; Stage (stratigraphy); Oncology; Basal cell; Internal medicine; Pathology; Cancer; Radiology; Surgery; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.1046896653762773,"gpt":0.3905361080261764,"spread":0.2858464426498992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002158551,0.0002572172,0.0005859365,0.0007636043,0.0001507186,0.00005096701,0.0001795607,0.0002774125,0.00001839272],"category_scores_gemma":[0.0009994166,0.0001822061,0.00005977082,0.001102802,0.0006628454,0.00005841055,0.0004737489,0.002866466,0.000001647172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004527812,"about_ca_system_score_gemma":0.0007226925,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009853919,"about_ca_topic_score_gemma":0.004161788,"domain_scores_codex":[0.9964792,0.0005976678,0.0005245721,0.0006924867,0.0009322219,0.0007738327],"domain_scores_gemma":[0.9982925,0.0008104414,0.0001169612,0.0004354696,0.0002498464,0.00009476826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001453121,0.00006666134,0.69541,0.00512109,0.0002141499,0.0006510803,0.001292247,8.776159e-7,0.001614554,0.00001097579,0.2893325,0.004832757],"study_design_scores_gemma":[0.003296253,0.0006060575,0.9481946,0.01040588,0.00006391987,0.00005819688,0.0003861832,0.001818257,0.0002452029,0.0004051318,0.03428527,0.0002350105],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8594626,0.02255536,8.173488e-7,0.1151966,0.0002382882,0.00158404,0.000251306,0.00001650569,0.0006945479],"genre_scores_gemma":[0.9667072,0.02129466,0.0002846868,0.007989181,0.001353737,0.001136551,0.0001811828,0.0001432229,0.000909617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2550472,"threshold_uncertainty_score":0.9994339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146977601","doi":"10.1186/2050-7771-1-29","title":"Predictive value of tumor recurrence using urinary vascular endothelial factor levels in patients receiving radiation therapy for Glioblastoma Multiforme (GBM)","year":2013,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Cancer Institute","keywords":"Medicine; Urinary system; Vascular endothelial growth factor; Radiation therapy; Internal medicine; Angiogenesis; Neovascularization; Tumor progression; Urology; Chemoradiotherapy; Oncology; Glioblastoma; Creatinine; Gastroenterology; Pathology; Cancer; VEGF receptors; Cancer research","retraction":null,"screen_n_in":null,"score":{"opus":0.06407086054557196,"gpt":0.3555974025316686,"spread":0.2915265419860966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005704559,0.0001369691,0.0001607136,0.0001722127,0.00009477882,0.00002393426,0.0002223837,0.0001244634,0.00005615835],"category_scores_gemma":[0.0003201361,0.0001216265,0.0001277455,0.0002209853,0.0001132125,0.00001965241,0.0001058437,0.00007520078,0.000003452212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008909185,"about_ca_system_score_gemma":0.0001715135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001877199,"about_ca_topic_score_gemma":0.000006713623,"domain_scores_codex":[0.9983663,0.0002318311,0.0002797632,0.000378475,0.000349942,0.0003936712],"domain_scores_gemma":[0.9990398,0.0000899415,0.00009507521,0.0002691096,0.0004332171,0.00007289559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001159325,0.0004069275,0.2173159,0.00007204455,0.0001186562,6.239987e-7,0.0001657891,0.00003139064,0.7199448,0.000005852201,0.0004236042,0.06035513],"study_design_scores_gemma":[0.001873332,0.00123197,0.7663416,0.00006259265,0.000003258886,8.044341e-7,0.00004713707,0.003414379,0.2250458,0.00002597348,0.001803558,0.0001496492],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967784,0.0009501147,0.0006453208,0.00001412118,0.0001205028,0.00125588,0.0001840588,0.000004472476,0.00004709204],"genre_scores_gemma":[0.9987543,0.000222937,0.0005725555,0.00001558543,0.0001166772,0.0002143073,0.00003708632,0.00002812051,0.00003839045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5490257,"threshold_uncertainty_score":0.4959783,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2805741696","doi":"10.1186/s40364-018-0133-z","title":"Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses","year":2018,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Faculty of Medicine, Memorial University of Newfoundland; Research and Development Corporation of Newfoundland and Labrador","keywords":"Single-nucleotide polymorphism; Gene; Colorectal cancer; Genetics; Medicine; Genome; Biology; Bioinformatics; Cancer; Genotype","retraction":null,"screen_n_in":null,"score":{"opus":0.1277829824904956,"gpt":0.3877357195920986,"spread":0.2599527371016029,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000974335,0.0002290493,0.0005274684,0.0004997745,0.0003154517,0.00005753592,0.000230778,0.0001695051,0.0006441958],"category_scores_gemma":[0.0003762568,0.000182176,0.0000845434,0.001210404,0.0009765512,0.00005501214,0.0001572667,0.0002628508,0.00001294015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005745071,"about_ca_system_score_gemma":0.0009993267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005175669,"about_ca_topic_score_gemma":0.002769468,"domain_scores_codex":[0.9969252,0.0003768563,0.0004143907,0.000535304,0.001090596,0.0006576873],"domain_scores_gemma":[0.997443,0.0006279947,0.0001689649,0.0004727149,0.0009717992,0.000315523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002211889,0.0004684582,0.2285918,0.0000793408,0.0005209301,0.0002343473,0.0004632139,0.000009571283,0.7643675,0.00001118402,0.001134699,0.001907057],"study_design_scores_gemma":[0.001733888,0.002609734,0.7667839,0.0001174007,0.000156863,0.00006281755,0.00009456078,0.000781325,0.226833,0.00002937455,0.0006015775,0.0001954999],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935654,0.001190523,0.0001708224,0.001213411,0.0001428846,0.0008888543,0.0002791667,0.00004758225,0.002501301],"genre_scores_gemma":[0.9969682,0.00005303333,0.002243431,0.0001485606,0.000183449,0.00008724071,0.0000746002,0.00005822162,0.0001832595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5381921,"threshold_uncertainty_score":0.7824098,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409408715","doi":"10.1186/s40364-025-00769-z","title":"IL1RAP is an immunotherapeutic target for normal karyotype triple-mutated acute myeloid leukemia","year":2025,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec; Princess Margaret Cancer Centre; University of Toronto; Université de Montréal; Medical Council of Canada; Hôpital Maisonneuve-Rosemont; National Research Council Canada; Centre Hospitalier Universitaire Sainte-Justine; Institute for Research in Immunology and Cancer","funders":"Cole Foundation; Fonds de Recherche du Québec - Santé; Alliance de recherche numérique du Canada; CHU Sainte-Justine Foundation; Institut de Valorisation des Données; Canada First Research Excellence Fund; Fondation Charles-Bruneau; Université de Montréal; Stem Cell Network; Government of Canada; Génome Québec; Canadian Institutes of Health Research; Genome Canada","keywords":"NPM1; Myeloid leukemia; Medicine; Cancer research; Haematopoiesis; Myeloid; Leukemia; Antigen; Stem cell; Immunology; Karyotype; Biology; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.08034417398707672,"gpt":0.4165432102343647,"spread":0.336199036247288,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004196023,0.0004322029,0.000703102,0.001787477,0.0007297844,0.0002182634,0.001026327,0.0005255472,0.001630093],"category_scores_gemma":[0.0005052466,0.0003785608,0.0003353985,0.003151083,0.000700469,0.0003532076,0.0004424158,0.001239785,0.000379921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002161358,"about_ca_system_score_gemma":0.005003039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006621905,"about_ca_topic_score_gemma":0.00002680313,"domain_scores_codex":[0.9940601,0.0006187006,0.0007189548,0.001113879,0.001483636,0.002004712],"domain_scores_gemma":[0.9955409,0.0006587343,0.00007960901,0.001580085,0.001597123,0.0005435281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.03129305,0.0007250221,0.006710947,0.0008235177,0.003412978,0.0003776194,0.0008586717,0.000002147654,0.5176697,0.001249041,0.3346182,0.1022591],"study_design_scores_gemma":[0.02489654,0.004352963,0.0670849,0.0004110955,0.0003887616,0.0001954829,0.000929656,0.03249019,0.1839365,0.002380898,0.6819569,0.0009760719],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9114679,0.005390213,0.003768985,0.02377807,0.0009191634,0.009920033,0.0005332102,0.0006369816,0.0435855],"genre_scores_gemma":[0.8008404,0.00115005,0.008894289,0.003516606,0.0005010667,0.001570312,0.001215034,0.0003019977,0.1820103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3473388,"threshold_uncertainty_score":0.9998666,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4395038612","doi":"10.1186/s40364-024-00592-y","title":"Immune escape of multiple myeloma cells results from low miR29b and the ensuing epigenetic silencing of proteasome genes","year":2024,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Multiple Myeloma Research and Treatments","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Bone and Joint Health Institute; University of Calgary","funders":"Associazione Italiana per la Ricerca sul Cancro; Massachusetts General Hospital","keywords":"PI3K/AKT/mTOR pathway; CD28; Gene silencing; Monoclonal gammopathy of undetermined significance; Cancer research; Transfection; MAPK/ERK pathway; Molecular biology; Downregulation and upregulation; CD8; CD80; Multiple myeloma; Cell biology; Biology; Chemistry; Cytotoxic T cell; Immune system; Signal transduction; Cell culture; CD40; In vitro; Immunology; Antibody; Monoclonal antibody; Monoclonal; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.06248834702139504,"gpt":0.3488840983327582,"spread":0.2863957513113631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002951378,0.0002018898,0.0004913623,0.0004562147,0.0001539884,0.0000663547,0.000267131,0.0001265105,0.0001224838],"category_scores_gemma":[0.001628888,0.0001238942,0.0001782113,0.00075165,0.0009583677,0.00007329256,0.0003620642,0.0003602202,0.00004488924],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008412272,"about_ca_system_score_gemma":0.0003129043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004694899,"about_ca_topic_score_gemma":0.00006841408,"domain_scores_codex":[0.9962183,0.0006719861,0.0006599378,0.0005564772,0.001266446,0.0006268146],"domain_scores_gemma":[0.9950469,0.003506875,0.00008404191,0.0007489758,0.000378674,0.0002345064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006924881,0.0001946283,0.005229108,0.0008737714,0.0005843751,0.0002095756,0.001261674,0.000001700965,0.8815908,0.00002517528,0.0001775037,0.1029268],"study_design_scores_gemma":[0.008381301,0.0003389839,0.1677542,0.00157482,0.00006536812,0.00001769022,0.0006847747,0.01895547,0.8014657,0.0001331719,0.0005021945,0.0001262769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9696441,0.0266039,0.00002959175,0.0006335744,0.000085974,0.002043377,0.0002531046,0.0000320217,0.0006744095],"genre_scores_gemma":[0.9960077,0.001692589,0.001015929,0.000004115748,0.00008574301,0.0001383635,0.00006303567,0.00004161899,0.0009508922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1625251,"threshold_uncertainty_score":0.7097315,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2624522829","doi":"10.1186/s40364-017-0101-z","title":"Integration of a bacterial gene sequence into a chronic eosinophilic leukemia patient’s genome as part of a fusion gene linker","year":2017,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Eosinophilic Disorders and Syndromes","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Fusion gene; Gene; Linker; Medicine; Genome; Sequence (biology); Computational biology; Bioinformatics; Genetics; Biology; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.1248614275887771,"gpt":0.3960909568610042,"spread":0.2712295292722271,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001074945,0.0001935308,0.0004735645,0.0003662542,0.0003089389,0.00006363467,0.0004326892,0.0002247563,0.0008850506],"category_scores_gemma":[0.0006853678,0.0001568899,0.0001569293,0.0002647682,0.0007944512,0.0001802832,0.0003917404,0.0002704064,0.00005742609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004333414,"about_ca_system_score_gemma":0.001245427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00221259,"about_ca_topic_score_gemma":0.0001625796,"domain_scores_codex":[0.9972965,0.0002027738,0.0005892368,0.0004592885,0.0009965037,0.0004557503],"domain_scores_gemma":[0.9975356,0.00007315062,0.0002777559,0.001240094,0.0006724747,0.000200909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008077611,0.0001972193,0.0009918775,0.0002362757,0.0000884441,0.00005898527,0.0007630432,3.711252e-7,0.9457416,0.00009245294,0.0003619577,0.05066],"study_design_scores_gemma":[0.00665563,0.007608244,0.2713732,0.001541605,0.000133989,0.0002635074,0.0004563285,0.001094488,0.6852806,0.001996304,0.02300718,0.0005888665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947913,0.001387769,0.00001755745,0.0006828287,0.0001988639,0.0008685145,0.0000364066,0.00001679492,0.001999938],"genre_scores_gemma":[0.9972144,0.0008766027,0.0005285596,0.00002110548,0.0001750353,0.00006820065,0.0001651434,0.00003212391,0.0009187696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2703814,"threshold_uncertainty_score":0.9690684,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409630176","doi":"10.1186/s40364-025-00772-4","title":"Challenges and advances for huntingtin detection in cerebrospinal fluid: in support of relative quantification","year":2025,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Structural Genomics Consortium; University of Toronto","funders":"National Institute of Neurological Disorders and Stroke; Natural Sciences and Engineering Research Council of Canada; Hereditary Disease Foundation","keywords":"Huntingtin; Flow cytometry; Cerebrospinal fluid; Immunoprecipitation; Polyglutamine tract; Recombinant DNA; Proximity ligation assay; Huntingtin Protein; Antibody; Chemistry; Molecular biology; Mutant; Biology; Gene; Biochemistry; Immunology; Receptor; Neuroscience","retraction":null,"screen_n_in":null,"score":{"opus":0.202172649295532,"gpt":0.437382593042341,"spread":0.235209943746809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001042105,0.00007523232,0.0001211719,0.000596035,0.00007170583,0.00001801175,0.0001342354,0.00004583855,0.000006014237],"category_scores_gemma":[0.002721602,0.00007523161,0.00002256985,0.0006227871,0.0002243362,0.0001471409,0.00007796039,0.0001004161,0.000002115874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003787736,"about_ca_system_score_gemma":0.00007725496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002459368,"about_ca_topic_score_gemma":0.0003498194,"domain_scores_codex":[0.998315,0.0004765615,0.0002503978,0.0004715564,0.000241838,0.0002446308],"domain_scores_gemma":[0.9988709,0.0007623471,0.00004669583,0.0001746196,0.0001160768,0.00002934264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003311209,0.0001120771,0.003944045,0.0001642058,0.000001476908,0.0000012133,0.0001644419,0.000003534502,0.9257559,0.003488574,0.00003203184,0.06600139],"study_design_scores_gemma":[0.0003916601,0.0001224172,0.2931708,0.00003513861,0.000001306933,4.455964e-7,0.0001549671,0.0004856611,0.702833,0.001830344,0.0009293737,0.00004495555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944503,0.001520843,0.0002802557,0.000800208,0.00006921355,0.0007423784,0.00001261211,0.00000907378,0.002115171],"genre_scores_gemma":[0.9983841,0.001064088,0.0001158495,0.00001814994,0.000006129607,0.0002006184,0.000001601786,0.000007289362,0.0002022288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2892267,"threshold_uncertainty_score":0.3258209,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4393202179","doi":"10.1186/s40364-024-00582-0","title":"Correction: Combined TP53 status in tumor-free resection margins and circulating microRNA profiling predicts the risk of locoregional recurrence in head and neck cancer","year":2024,"lang":"en","type":"erratum","venue":"Biomarker Research","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Impact","funders":"","keywords":"Medicine; Head and neck cancer; Profiling (computer programming); microRNA; Head and neck; Resection; Oncology; Internal medicine; Cancer; Surgery; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.08293323741086733,"gpt":0.3880607842795635,"spread":0.3051275468686961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002409497,0.0002796566,0.0006488441,0.0008328084,0.0002226538,0.00005854671,0.0001674513,0.0002683657,0.0000253043],"category_scores_gemma":[0.001761251,0.0002061544,0.00006632223,0.001565231,0.0006573088,0.00007003699,0.0004827548,0.002667625,0.000001667489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006370396,"about_ca_system_score_gemma":0.00145512,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01334727,"about_ca_topic_score_gemma":0.0211808,"domain_scores_codex":[0.9965096,0.0005446922,0.0005774044,0.0007410955,0.000932036,0.000695234],"domain_scores_gemma":[0.9982738,0.0006290199,0.0001485548,0.0004321243,0.0003641516,0.000152342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.002404329,0.0001313947,0.4714001,0.003684202,0.0002162537,0.0001698353,0.00157306,0.000001971213,0.0006650213,0.00001678892,0.5099783,0.009758776],"study_design_scores_gemma":[0.002636011,0.0007795324,0.9453952,0.01521297,0.00006669379,0.0000810753,0.001035424,0.007707322,0.0001288988,0.0002045691,0.02653065,0.0002216681],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8886615,0.08805858,0.000002131161,0.002556856,0.008335671,0.002442413,0.0002899708,0.00003589858,0.009616964],"genre_scores_gemma":[0.9034247,0.07136228,0.0001455305,0.00007246329,0.00148341,0.001120635,0.0002179167,0.0001400745,0.02203299],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4834476,"threshold_uncertainty_score":0.9996333,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4415615711","doi":"10.1186/s40364-025-00850-7","title":"THSD4 is a novel mediator of T cell exclusion and anti-PD-1 resistance in hormone receptor-positive breast cancer","year":2025,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland; Beatrice Hunter Cancer Research Institute; Nova Scotia Health Authority; Acadia University; Dalhousie University","funders":"Killam Trusts; Canadian Cancer Society; Dalhousie University; Faculty of Medicine, Dalhousie University; Canadian Institutes of Health Research; Cancer Research Society; Dalhousie Medical Research Foundation; Research Nova Scotia; Beatrice Hunter Cancer Research Institute","keywords":"Breast cancer; Pembrolizumab; Immune system; Immunotherapy; Tumor microenvironment; Immune checkpoint; T cell; Antibody","retraction":null,"screen_n_in":null,"score":{"opus":0.03566022618823507,"gpt":0.3629876044686055,"spread":0.3273273782803705,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00135941,0.0001675614,0.0003697176,0.0006199375,0.0001188832,0.00002457812,0.0001721821,0.0001799805,0.0002906856],"category_scores_gemma":[0.00005889508,0.0001414236,0.00007961042,0.001618144,0.0004829196,0.00008374304,0.0001575544,0.0002936228,0.000004558486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003597675,"about_ca_system_score_gemma":0.0005534336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001671103,"about_ca_topic_score_gemma":0.0003345108,"domain_scores_codex":[0.9978955,0.0001485684,0.0003919914,0.0004644454,0.000651508,0.0004479726],"domain_scores_gemma":[0.998857,0.0002342995,0.0000747092,0.0003618945,0.0003577633,0.0001143073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0115224,0.0003605304,0.02362467,0.0004025634,0.0001206094,0.00001254204,0.0007038729,1.602238e-8,0.9240096,0.00003907546,0.03314422,0.00605994],"study_design_scores_gemma":[0.005894962,0.000113627,0.8082417,0.001218903,0.00002442401,0.000005343477,0.0004742789,0.0000322205,0.1719382,0.00002991984,0.01187124,0.0001552362],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9599631,0.02258808,0.00002349668,0.00955081,0.0001218355,0.000825661,0.0004314512,0.00001693468,0.006478569],"genre_scores_gemma":[0.9863942,0.008670627,0.0002928521,0.0002728432,0.00004668605,0.00007451567,0.00002036177,0.00002212347,0.004205849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.784617,"threshold_uncertainty_score":0.5767089,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4415464815","doi":"10.1186/s40364-025-00827-6","title":"High IL1R1 expression predicts poor survival and benefit from stem cell transplant in intermediate-risk acute myeloid leukemia from the Leucegene cohort","year":2025,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; Centre Hospitalier Universitaire Sainte-Justine; Hôpital Maisonneuve-Rosemont; Princess Margaret Cancer Centre; University of Toronto","funders":"Alliance de recherche numérique du Canada; Government of Canada; Génome Québec; Fonds de Recherche du Québec - Santé; Genome Canada","keywords":"Myeloid leukemia; Stem cell; Cohort; Hematopoietic stem cell transplantation; Transplantation; Myeloid; Haematopoiesis","retraction":null,"screen_n_in":null,"score":{"opus":0.02864860610222954,"gpt":0.3072421065102523,"spread":0.2785935004080228,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003499993,0.0004538864,0.0008086734,0.0006709028,0.0004105622,0.0001843793,0.001018884,0.000533881,0.0003525431],"category_scores_gemma":[0.0001562306,0.0003113009,0.0001491545,0.001240939,0.0007097739,0.0001928027,0.0009480835,0.002100385,0.0001011439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0013691,"about_ca_system_score_gemma":0.001222924,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02470518,"about_ca_topic_score_gemma":0.001555087,"domain_scores_codex":[0.9935879,0.001064697,0.0008012062,0.001318573,0.001942133,0.001285478],"domain_scores_gemma":[0.9945207,0.003265464,0.0001076056,0.001292252,0.0003268599,0.0004870718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.009706805,0.0002701478,0.6021081,0.0001749791,0.0008614183,0.0009660936,0.001522648,0.000004984032,0.3343617,0.00007003698,0.0213121,0.02864099],"study_design_scores_gemma":[0.007123094,0.0002325199,0.8731198,0.0008884671,0.0001997749,0.000007956148,0.001161492,0.002162167,0.1119821,0.0004409361,0.002403289,0.0002784668],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884258,0.003299686,0.0001328706,0.001983728,0.0004165118,0.002047011,0.001678628,0.00009212214,0.001923626],"genre_scores_gemma":[0.9873825,0.006603709,0.0002617432,0.0001578592,0.0002979912,0.0003113537,0.0007973895,0.00007857879,0.004108869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2710117,"threshold_uncertainty_score":0.9999339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2806063826","doi":"10.1186/s40364-018-0132-0","title":"Absence of calretinin protein expression in malignant mesotheliomas from asbestos-exposed NF2+/− mice and mouse mesothelioma cell lines from various mouse strains","year":2018,"lang":"en","type":"article","venue":"Biomarker Research","topic":"Occupational and environmental lung diseases","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Université de Fribourg; University of Toronto; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Calretinin; Mesothelioma; Asbestos; Pathology; Medicine; Immunohistochemistry; Cancer research","retraction":null,"screen_n_in":null,"score":{"opus":0.0544855228388952,"gpt":0.3298729644480855,"spread":0.2753874416091903,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005269343,0.0002216423,0.0003285511,0.0003605709,0.0001085215,0.00003126328,0.0002287979,0.0001723876,0.0008271223],"category_scores_gemma":[0.0001920475,0.000176168,0.00006516182,0.00037405,0.0006570213,0.0001115164,0.000321034,0.000200642,0.00009130967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000856859,"about_ca_system_score_gemma":0.0001410737,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004074757,"about_ca_topic_score_gemma":0.000266417,"domain_scores_codex":[0.9972576,0.0003067779,0.0004487679,0.0006086034,0.0009475585,0.0004306704],"domain_scores_gemma":[0.9987785,0.0002344166,0.0001017852,0.000463997,0.0001216456,0.0002996914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001783581,0.000781025,0.08359696,0.00008087219,0.00003227169,0.0000893391,0.000448631,3.689678e-7,0.9115283,0.000007483764,0.0005087114,0.001142458],"study_design_scores_gemma":[0.001579772,0.0003712617,0.3463471,0.000301126,0.00001306955,0.000002310298,0.0002846734,0.0003096899,0.6502342,0.0001557071,0.000261246,0.0001398253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996432,0.001015214,0.00003168698,0.0002196448,0.0000249544,0.0008650567,0.0006145756,0.0000323014,0.0007645742],"genre_scores_gemma":[0.9948032,0.0001035596,0.002623018,0.00004812518,0.0001255471,0.00007697638,0.0001994812,0.00004491079,0.001975216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2627501,"threshold_uncertainty_score":0.905641,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4416204551","doi":"10.1186/s40364-025-00857-0","title":"Global mapping of RNA N6-methyladenosine (m6A) in human subcutaneous and visceral adipose tissue reveals novel targets that correlate with clinical variables of obesity","year":2025,"lang":"en","type":"article","venue":"Biomarker Research","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University Health Network","funders":"Helse Sør-Øst RHF; Akershus Universitetssykehus; Universitetet i Oslo; Norwegian Sequencing Centre","keywords":"Adipose tissue; Obesity; Subcutaneous adipose tissue; Subcutaneous fat; Intra-Abdominal Fat; Human obesity","retraction":null,"screen_n_in":null,"score":{"opus":0.0688672069010356,"gpt":0.4019366051869018,"spread":0.3330693982858662,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001319651,0.0001107564,0.0002518264,0.0001227827,0.00008175857,0.00001876311,0.0002332129,0.0001908501,0.00001945108],"category_scores_gemma":[0.0001230343,0.00009653113,0.00003981842,0.0004306037,0.0004077087,0.000005179553,0.0002157362,0.0001300059,4.695576e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003504998,"about_ca_system_score_gemma":0.0001714583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005829705,"about_ca_topic_score_gemma":0.0001852072,"domain_scores_codex":[0.99851,0.0002350974,0.0003707499,0.0003843439,0.0002305806,0.000269234],"domain_scores_gemma":[0.999153,0.00006432449,0.0001003387,0.0003828544,0.0002318204,0.00006764197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006499149,0.0003714527,0.1531169,0.0001431968,0.0001502752,0.00001412919,0.00002441299,0.000008740665,0.8347749,0.0006377047,0.001255483,0.008852903],"study_design_scores_gemma":[0.001622414,0.0006138579,0.9323215,0.000281994,0.0000254834,0.0000229804,0.00009840763,0.0001218082,0.06108453,0.0003175147,0.003311849,0.0001776809],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991637,0.00379686,0.001621799,0.0001510075,0.00004556412,0.0003326004,0.00006364806,0.000003558031,0.002347981],"genre_scores_gemma":[0.9973804,0.0004572161,0.0009902681,0.00001770866,0.00002282963,0.00001703133,0.00003901947,0.000008652223,0.001066848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7792045,"threshold_uncertainty_score":0.3936425,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}