{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":29,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":29,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"db240b99b52c","filters":{"venue":"Brazilian Journal of Microbiology"}},"results":[{"id":"W2297166375","doi":"10.1016/j.bjm.2016.01.003","title":"Role of pH on antioxidants production by Spirulina ( Arthrospira ) platensis","year":2016,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Algal biology and biofuel production","field":"Energy","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Faculty of Science, Zagazig University; Zagazig University; Ministry of Higher Education; Ministry of Higher Education and Scientific Research","keywords":"Antioxidant; Arthrospira; Superoxide dismutase; Catalase; Spirulina (dietary supplement); Chemistry; Food science; Reactive oxygen species; Carotenoid; Biochemistry; Phycobiliprotein; Chlorophyll; Botany; Cyanobacteria; Biology","authors":[{"name":"Mostafa M. S. Ismaiel","is_ca":true},{"name":"Yassin El-Ayouty","is_ca":false},{"name":"Michele D. Piercey‐Normore","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007421141306933176,"gpt":0.2133894983744339,"spread":0.2059683570675007,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004230559,0.0001698354,0.0003766546,0.0001448619,0.00006630519,0.000003326481,0.0001934754,0.0002665503,0.0002738977],"category_scores_gemma":[0.0001850305,0.0001025751,0.0001446443,0.0001201305,0.0003594024,0.0001313801,0.00002571604,0.0001819293,0.0001412872],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004298534,"about_ca_system_score_gemma":0.00004354944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001021783,"about_ca_topic_score_gemma":0.0000134468,"domain_scores_codex":[0.9986392,0.0001842524,0.0005963354,0.0002671262,0.00005632225,0.0002567736],"domain_scores_gemma":[0.9987529,0.00004995085,0.0006564276,0.0002140483,0.0002703837,0.00005631819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006465631,0.0001365263,0.002737639,0.000007918585,0.00009892813,0.000004314482,0.00003893995,0.000007960646,0.9382591,0.0002191371,0.005837337,0.05200568],"study_design_scores_gemma":[0.0007013282,0.001103372,0.004457106,0.00008689591,0.0000273037,0.0006335091,0.00003737013,1.23312e-7,0.9310579,0.0009037408,0.06086149,0.000129862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950472,0.0009619998,0.00003327825,0.002259005,0.001168705,0.00007909874,0.00003120321,0.00001601031,0.0004035716],"genre_scores_gemma":[0.9982187,0.0003453219,0.0001566982,0.0001629486,0.0004904585,8.111291e-7,0.000009486555,0.00001408011,0.0006014715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05502415,"threshold_uncertainty_score":0.418289,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2761336281","doi":"10.1016/j.bjm.2017.04.014","title":"Anaerobic biodegradation of benzo(a)pyrene by a novel Cellulosimicrobium cellulans CWS2 isolated from polycyclic aromatic hydrocarbon-contaminated soil","year":2017,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland; Science North","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Biodegradation; Pyrene; Chemistry; Phenanthrene; Polycyclic aromatic hydrocarbon; Environmental chemistry; Benzo(a)pyrene; Bioremediation; Environmental remediation; Hydrocarbon; Nuclear chemistry; Contamination; Organic chemistry","authors":[{"name":"Wei Qin","is_ca":false},{"name":"Fuqiang Fan","is_ca":true},{"name":"Yi Zhu","is_ca":false},{"name":"Xiaolong Huang","is_ca":false},{"name":"Aizhong Ding","is_ca":false},{"name":"Xiang Liu","is_ca":false},{"name":"Junfeng Dou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007743802153735702,"gpt":0.2070867987576599,"spread":0.1993429966039242,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003856267,0.000318814,0.0006170806,0.0001234455,0.0002151875,0.00005739751,0.00102814,0.0003313457,0.0007774209],"category_scores_gemma":[0.00009366585,0.0002714719,0.0002125726,0.0001482699,0.000584806,0.0002979444,0.0001705234,0.0003085794,0.0001549939],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001437011,"about_ca_system_score_gemma":0.0000562434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007511048,"about_ca_topic_score_gemma":0.0005657202,"domain_scores_codex":[0.9978644,0.0001366986,0.001081507,0.0003640373,0.0001334494,0.0004199091],"domain_scores_gemma":[0.9971063,0.00006902582,0.002104803,0.0005145664,0.00002578065,0.0001795065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001409915,0.0002554007,0.00842646,0.000006317334,0.00009060875,0.00001064811,0.0002110675,0.000008214653,0.9829785,5.930625e-7,0.00677733,0.001093829],"study_design_scores_gemma":[0.002270219,0.0004096698,0.01759126,0.00008459869,0.00009436116,0.0001060856,0.0000626624,0.0001799108,0.9759986,0.00003324994,0.002848534,0.0003207951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997119,0.0002228896,0.0005567161,0.0007163075,0.0006466829,0.0001780875,0.0003476277,0.0000147699,0.0001979278],"genre_scores_gemma":[0.9980025,0.00009690929,0.001007173,0.0002434413,0.0000596378,6.552565e-7,0.0002279398,0.00002528671,0.0003364627],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009164798,"threshold_uncertainty_score":0.9999738,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2219711236","doi":"10.1590/s1517-838246120140095","title":"Arcobacter butzleri and A. cryaerophilus in human, animals and food sources, in southern Chile","year":2015,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"York University; Universidad Autónoma de Chihuahua; NYU Langone Medical Center","keywords":"Arcobacter; Geography; Biology; Bacteria; Campylobacter","authors":[{"name":"Heriberto Fernández","is_ca":false},{"name":"María Paz Villanueva","is_ca":false},{"name":"Ingrid Mansilla","is_ca":false},{"name":"Mario González","is_ca":false},{"name":"Fadua Latif","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02605519527250378,"gpt":0.2291947664161587,"spread":0.2031395711436549,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007890968,0.0001513515,0.0004499689,0.00005660383,0.00003790976,0.00001943879,0.0001855624,0.000190589,0.00005614572],"category_scores_gemma":[0.00009425741,0.00006548847,0.00005074812,0.0001276316,0.0001955276,0.0000592524,0.00008433519,0.0002598685,0.000006002056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000236286,"about_ca_system_score_gemma":0.0000139436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001139872,"about_ca_topic_score_gemma":0.001625863,"domain_scores_codex":[0.9985633,0.0003469719,0.000520349,0.0002225347,0.00003494963,0.0003119226],"domain_scores_gemma":[0.9993711,0.0001474288,0.0002427987,0.00003932903,0.00005124777,0.0001480727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009483918,0.00004886797,0.4994494,0.000003910777,0.00001349717,0.00002777037,0.0006256064,0.000001924073,0.4959038,0.00005109375,0.0002009248,0.00357839],"study_design_scores_gemma":[0.001745386,0.002404101,0.9771739,0.00007074935,0.00001261278,0.001882654,0.002391572,0.000002348149,0.001172295,0.003606214,0.009253443,0.0002847464],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995397,0.003114637,6.526056e-7,0.001205847,0.00008202868,0.00008399147,0.00002803822,0.000005581172,0.00008221203],"genre_scores_gemma":[0.9993247,0.00007528668,0.00006477597,0.0003175864,0.0001744419,0.000001323681,0.000007989665,0.000001592176,0.00003228443],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4947315,"threshold_uncertainty_score":0.2670542,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999511248","doi":"10.1590/s1517-83822014000200003","title":"Optimization of lipids production by Cryptococcus laurentii 11 using cheese whey with molasses","year":2014,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Polytechnique Montréal","funders":"Universidade Estadual Paulista; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Royal Society of Chemistry; Amsterdam University Medical Centers","keywords":"Food science; Fermentation; Composition (language); Plackett–Burman design; Yeast extract; Chemistry; Factorial experiment; Yeast; Biomass (ecology); Biodiesel production; Biochemistry; Biodiesel; Biology; Mathematics; Agronomy","authors":[{"name":"Rodrigo Fernandes Castanha","is_ca":false},{"name":"Adriano Pinto Mariano","is_ca":true},{"name":"L. A. S. de Morais","is_ca":false},{"name":"S. Scramin","is_ca":false},{"name":"Regina Teresa Rosim Monteiro","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004395384970075356,"gpt":0.2076869654317723,"spread":0.203291580461697,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003384422,0.0001451527,0.0002533899,0.00009556923,0.00003973754,0.000008790976,0.0001430005,0.0001471542,0.00001865005],"category_scores_gemma":[0.0001280585,0.0001145422,0.0000748052,0.000122078,0.0001128026,0.00001136299,0.00002469664,0.0001020681,7.219787e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001236928,"about_ca_system_score_gemma":0.00005795631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007481936,"about_ca_topic_score_gemma":0.000009026143,"domain_scores_codex":[0.9991118,0.0001055629,0.0003635081,0.0002079327,0.00004546328,0.0001657044],"domain_scores_gemma":[0.9990398,0.000001837287,0.0003997163,0.0001920907,0.0003182101,0.00004838366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001334742,0.00007158731,0.000717981,0.00003545083,0.00005996641,2.569008e-7,0.00002410157,0.025336,0.9703404,0.000004396924,0.002803872,0.0004724959],"study_design_scores_gemma":[0.0005675261,0.0005722406,0.0001805112,0.00005790507,0.00005471764,0.0005095819,0.00002915691,0.00007938044,0.9697141,0.000002809689,0.02809016,0.0001418948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9683747,0.0005948708,0.03010176,0.0001058491,0.0006886501,0.0001066081,0.00001040677,0.000005415603,0.00001177545],"genre_scores_gemma":[0.9853306,0.0001354796,0.01356227,0.00003000892,0.0007161194,0.000001095395,0.00005838071,0.00002104529,0.0001449951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02528629,"threshold_uncertainty_score":0.4670896,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3179023046","doi":"10.1007/s42770-021-00567-3","title":"Pig vaccination strategies based on enterotoxigenic Escherichia coli toxins","year":2021,"lang":"en","type":"review","venue":"Brazilian Journal of Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacterial adhesin; Enterotoxigenic Escherichia coli; Enterotoxin; Virulence; Microbiology; Diarrhea; Biology; Fimbria; Vaccination; Escherichia coli; Virology; Medicine; Gene","authors":[{"name":"J. Daniel Dubreuil","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02368666617778641,"gpt":0.3306110969124859,"spread":0.3069244307346994,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000678773,0.0005416572,0.001621073,0.0002747242,0.0001172302,0.00007725376,0.0007520234,0.0006578714,0.0001767888],"category_scores_gemma":[0.000443895,0.0004334549,0.001010755,0.000288566,0.0001327132,0.000008564697,0.0002165502,0.000795958,0.00002321369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001288962,"about_ca_system_score_gemma":0.002129424,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001472582,"about_ca_topic_score_gemma":0.00002701171,"domain_scores_codex":[0.9967444,0.001107824,0.0009975135,0.0005043743,0.0001461324,0.000499779],"domain_scores_gemma":[0.9977344,0.0001340496,0.0009816666,0.0005051711,0.0004957968,0.0001488748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005636694,0.001487189,0.00006731872,0.01038509,0.004717943,0.0005521189,0.00009773135,0.0001626216,0.4178913,0.0001931673,0.06267708,0.5012048],"study_design_scores_gemma":[0.0006405077,0.0015136,0.00001809424,0.001965801,0.0002388824,0.0002474343,0.00006857687,0.000002447053,0.002002927,0.000005166312,0.9929325,0.0003640754],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00173933,0.9960386,0.000365915,0.00009809018,0.0006011747,0.0005160052,0.00009822187,0.00000723956,0.0005354125],"genre_scores_gemma":[0.001258753,0.9962171,0.0007898409,0.0002473601,0.0006125649,0.00004302123,0.0003195166,0.00007178143,0.0004400251],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9302554,"threshold_uncertainty_score":0.9998117,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2211410077","doi":"10.1590/s1517-838246420140787","title":"Determination of lytic enzyme activities of indigenous Trichoderma isolates from Pakistan","year":2015,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Manitoba","keywords":"Mycelium; Trichoderma; Trichoderma harzianum; Rhizoctonia solani; Food science; Microbiology; Enzyme; Chemistry; Biology; Horticulture; Botany; Biochemistry; Biological pest control","authors":[{"name":"Saeed Ahmad Asad","is_ca":false},{"name":"Ayesha Tabassum","is_ca":false},{"name":"Abdul Hameed","is_ca":false},{"name":"Fayyaz ul Hassan","is_ca":false},{"name":"Aftab Afzal","is_ca":false},{"name":"Sabaz Ali Khan","is_ca":false},{"name":"Rafiq Ahmad","is_ca":false},{"name":"Muhammad Shahzad","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01996211829198147,"gpt":0.2497631990838795,"spread":0.229801080791898,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002767576,0.0001010655,0.0003319819,0.0000531256,0.00004721491,0.00001213049,0.0002814436,0.0001128219,0.0001411973],"category_scores_gemma":[0.00007387982,0.00004421077,0.0001235159,0.0001273599,0.0001111183,0.0001689664,0.00003783868,0.000167384,0.000004339387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003909773,"about_ca_system_score_gemma":0.00004774271,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003017356,"about_ca_topic_score_gemma":0.0003215234,"domain_scores_codex":[0.99901,0.0001879989,0.0005262239,0.00008443736,0.00004446054,0.0001468496],"domain_scores_gemma":[0.9986039,0.0003527351,0.0007075963,0.00004750696,0.0002303031,0.00005795453],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001739424,0.0001271536,0.002219785,0.000003827969,0.00003178367,0.00000481451,0.0007103357,0.000002296812,0.9792462,0.000002280667,0.0004519715,0.01702563],"study_design_scores_gemma":[0.0006219498,0.001709934,0.01737322,0.0001065155,0.00004342336,0.0007516089,0.003556204,0.00001782431,0.9660358,0.0003716394,0.00924452,0.0001673815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984645,0.0007595802,0.0000548231,0.0001076531,0.000221414,0.00005726586,0.0002396513,0.000004166024,0.00009092603],"genre_scores_gemma":[0.9992697,0.00008440934,0.0004039379,0.00003719563,0.00007785459,4.213153e-7,0.0000450583,9.337761e-7,0.00008045687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01685825,"threshold_uncertainty_score":0.1802863,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1481433724","doi":"10.1590/s1517-838246220140234","title":"Prevalence of Helicobacter pylori in children in eastern Turkey and molecular typing of isolates","year":2015,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Health Canada; Institut National de la Santé et de la Recherche Médicale","keywords":"Helicobacter pylori; Restriction fragment length polymorphism; Typing; Gastroenterology; Internal medicine; Polymerase chain reaction; Population; Biology; Medicine; Antrum; Stomach; Microbiology; Genetics; Gene","authors":[{"name":"Gökben Özbey","is_ca":false},{"name":"Yaşar Doğan","is_ca":false},{"name":"Kaan Demirören","is_ca":false},{"name":"İbrahim Hanifı Özercan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01175673933992629,"gpt":0.2490982787504186,"spread":0.2373415394104923,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005041862,0.0001542312,0.0006497714,0.000403634,0.000006513103,0.00000208931,0.000146544,0.0001617915,0.00001063943],"category_scores_gemma":[0.0002242169,0.0001281291,0.00007033503,0.0001593075,0.000281421,0.00007746321,0.00009334603,0.0003824471,0.000002762694],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004553749,"about_ca_system_score_gemma":0.00008753827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003330557,"about_ca_topic_score_gemma":0.00001295301,"domain_scores_codex":[0.9985061,0.0001848428,0.0008352619,0.000170136,0.0000453157,0.0002583079],"domain_scores_gemma":[0.9990301,0.00004260786,0.0004354517,0.0001461724,0.000248355,0.00009733027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005348435,0.00009900251,0.7785792,0.00007253553,0.0001745788,0.00002973539,0.0006905103,0.00001702336,0.2194192,0.000002310775,0.00004714495,0.0003339288],"study_design_scores_gemma":[0.005639725,0.001870127,0.9667888,0.0008597463,0.000121705,0.002852096,0.0002013108,0.00001681911,0.02143788,0.0000393364,0.00007063881,0.0001017577],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948593,0.003857117,0.00002938952,0.0009253278,0.0001166196,0.0001676178,0.0000129834,0.000002874979,0.00002875575],"genre_scores_gemma":[0.9988813,0.0003051053,0.0005282448,0.0002135119,0.00003255726,0.000001073396,0.000002942359,0.00001244022,0.00002276378],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1979813,"threshold_uncertainty_score":0.5224953,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2800817462","doi":"10.1016/j.bjm.2018.04.005","title":"Adopt a Bacterium – an active and collaborative learning experience in microbiology based on social media","year":2018,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Innovative Teaching Methods","field":"Social Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Formative assessment; Summative assessment; Presentation (obstetrics); Theme (computing); Social media; Psychology; Medical education; Mathematics education; World Wide Web; Computer science; Medicine","authors":[{"name":"Marco Aurélio Floriano Piantola","is_ca":false},{"name":"Ana Carolina Ramos Moreno","is_ca":false},{"name":"Heloísa Alonso Matielo","is_ca":false},{"name":"Natália Pasternak Taschner","is_ca":false},{"name":"Rafael Ciro Marques Cavalcante","is_ca":false},{"name":"Samia Khan","is_ca":true},{"name":"Rita de Cássia Café Ferreira","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04175627447361399,"gpt":0.3742266945196668,"spread":0.3324704200460529,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00232009,0.0001762631,0.00043632,0.0003735899,0.0004839937,0.00003548693,0.000349125,0.0002918566,0.0002185883],"category_scores_gemma":[0.0019755,0.0001595435,0.00004817753,0.0005235302,0.00220605,0.0002369801,0.00004372894,0.0006932106,0.000007203986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000223099,"about_ca_system_score_gemma":0.0004998156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003347152,"about_ca_topic_score_gemma":0.0009383564,"domain_scores_codex":[0.9945536,0.004216255,0.0004460682,0.0002807962,0.0000661982,0.0004371145],"domain_scores_gemma":[0.997911,0.000783066,0.0005386451,0.00008248495,0.0005903412,0.00009447851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","study_design_scores_codex":[0.0008281475,0.0001135225,0.006858657,0.000003306426,0.00001832866,0.00003061255,0.1455949,0.000003777722,0.8341095,0.000667783,0.0002214845,0.01154998],"study_design_scores_gemma":[0.009943397,0.008276165,0.1751158,0.0003985836,0.00006899652,0.0004706416,0.294183,0.00007794538,0.2792403,0.0009985466,0.2293649,0.001861546],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967534,0.0000222512,0.0003306683,0.0009684697,0.0007260086,0.0001243179,0.0000229313,0.00001442859,0.001037554],"genre_scores_gemma":[0.9923213,0.00001003587,0.006421993,0.00054432,0.000642387,0.000003027776,0.000009394465,0.00001399041,0.00003360519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5548692,"threshold_uncertainty_score":0.8128281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2023304314","doi":"10.1590/s1517-83822014000100022","title":"A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates","year":2014,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of British Columbia; National Natural Science Foundation of China; Capital Normal University","keywords":"Firmicutes; Actinobacteria; Biology; Proteobacteria; Botany; Phylum; Cytophaga; Bacteroidetes; Pseudomonas; Bacteria; 16S ribosomal RNA; Flavobacterium","authors":[{"name":"Xiao Lei Liu","is_ca":false},{"name":"Su Lin Liu","is_ca":false},{"name":"Min Liu","is_ca":false},{"name":"Bi He Kong","is_ca":false},{"name":"Lei Liu","is_ca":false},{"name":"Yan Hong Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009915095008413576,"gpt":0.2602961821293692,"spread":0.2503810871209556,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001275465,0.000152158,0.0004784035,0.00006152897,0.0001696325,0.000006526011,0.0005660497,0.0001597396,0.0001779989],"category_scores_gemma":[0.0001031975,0.0001124286,0.00009900036,0.0001627359,0.0005530273,0.00007424112,0.0004928898,0.0008213929,0.000001648334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001369947,"about_ca_system_score_gemma":0.00005064507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000322746,"about_ca_topic_score_gemma":0.0003442666,"domain_scores_codex":[0.9954069,0.003713639,0.0004970137,0.0001170973,0.00003458512,0.0002308276],"domain_scores_gemma":[0.9988269,0.0003140799,0.0004855155,0.0002994661,0.00002647167,0.0000476099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001207387,0.0001354522,0.01388452,0.00001678376,0.00003661881,0.000004082445,0.0004403938,0.001154482,0.9835526,0.00001972124,0.00006303625,0.0005715131],"study_design_scores_gemma":[0.005225797,0.00239668,0.8025272,0.0002270378,0.0001638775,0.002798704,0.0002619112,0.001135738,0.1770207,0.005611837,0.002088313,0.0005422226],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983643,0.00004518643,0.0009032309,0.0001208258,0.0001914294,0.0001360078,0.00001050458,0.000002619539,0.0002258858],"genre_scores_gemma":[0.9928187,0.00001529363,0.006791551,0.000333718,0.00001727206,7.683756e-7,0.000006277097,0.00000937361,0.000007084229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.806532,"threshold_uncertainty_score":0.4584706,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3174543614","doi":"10.1007/s42770-021-00533-z","title":"Diagnosis of Chlamydia trachomatis genital infections in the era of genomic medicine","year":2021,"lang":"en","type":"review","venue":"Brazilian Journal of Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Chlamydia trachomatis; Omics; Medicine; Disease; Intensive care medicine; Medical physics; Bioinformatics; Pathology; Gynecology; Biology","authors":[{"name":"Seema Shetty","is_ca":false},{"name":"Christina Kouskouti","is_ca":true},{"name":"Uwe Schoen","is_ca":false},{"name":"Nikolaos Evangelatos","is_ca":true},{"name":"Kapaettu Satyamoorthy","is_ca":false},{"name":"Franz Kainer","is_ca":false},{"name":"Angela Brand","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03675268300734643,"gpt":0.3444547109372629,"spread":0.3077020279299165,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002260807,0.0004004946,0.003046719,0.001016742,0.00009331095,0.000007174645,0.0009323772,0.0007680604,0.001914725],"category_scores_gemma":[0.00138595,0.0002529822,0.0009271272,0.0008617564,0.001371275,0.00009247375,0.0001214802,0.002618282,0.00007679313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001521688,"about_ca_system_score_gemma":0.0008949925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001037128,"about_ca_topic_score_gemma":0.00008405554,"domain_scores_codex":[0.9935194,0.003219246,0.002429112,0.0003667433,0.00005664034,0.0004088513],"domain_scores_gemma":[0.9941869,0.002576944,0.002000842,0.0006561535,0.0005498796,0.00002931544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005701919,0.001708557,0.003806672,0.003596132,0.003100078,0.0001134002,0.001397665,0.000007952465,0.05276256,0.0002016596,0.009361229,0.9238871],"study_design_scores_gemma":[0.00132435,0.001010622,0.004308995,0.006552847,0.001105425,0.02644981,0.0003978547,1.847637e-8,0.001622776,0.00004504824,0.9568973,0.0002849753],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05140454,0.9462574,0.00001483598,0.0002040448,0.001141582,0.0005872902,0.0001859566,0.000004591524,0.0001997791],"genre_scores_gemma":[0.01254803,0.9868361,0.00005826492,0.00001879181,0.0001905517,0.0000477048,0.0001569887,0.00003519508,0.0001083575],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9475361,"threshold_uncertainty_score":0.9999923,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4284961466","doi":"10.1007/s42770-022-00791-5","title":"Characterization of antimicrobial compounds obtained from the potential probiotic Lactiplantibacillus plantarum S61 and their application as a biopreservative agent","year":2022,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Lactobacillus plantarum; Antimicrobial; Microbiology; Food science; Biology; Food spoilage; Probiotic; Salmonella enterica; Biopreservation; Listeria monocytogenes; Fusarium oxysporum; Penicillium; Bacteria; Bacteriocin; Lactic acid; Salmonella; Botany","authors":[{"name":"Houssam Abouloifa","is_ca":false},{"name":"Yahya Rokni","is_ca":false},{"name":"Ismail Hasnaoui","is_ca":false},{"name":"Reda Bellaouchi","is_ca":false},{"name":"Sara Gaamouche","is_ca":false},{"name":"Nabil Ghabbour","is_ca":false},{"name":"Salwa Karboune","is_ca":true},{"name":"Riadh Ben Salah","is_ca":false},{"name":"Milena Brasca","is_ca":false},{"name":"G D'Hallewin","is_ca":false},{"name":"Ennouamane Saalaoui","is_ca":false},{"name":"Abdeslam Asehraou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008197062617078702,"gpt":0.1884335240365458,"spread":0.1802364614194671,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003198137,0.0001376515,0.0002719494,0.00002468928,0.000290222,0.00002648647,0.0004035613,0.00007339178,0.0001119057],"category_scores_gemma":[0.00001394286,0.00005334753,0.0000984539,0.0001761119,0.0001545308,0.0000690525,0.0002041322,0.0002464118,0.000002239902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003098356,"about_ca_system_score_gemma":0.00002906156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008403882,"about_ca_topic_score_gemma":0.00004312069,"domain_scores_codex":[0.9989035,0.0002622875,0.0004116466,0.0001806394,0.00006110299,0.0001807973],"domain_scores_gemma":[0.9991027,0.0001010242,0.000591476,0.00006324848,0.0000956408,0.00004590572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004179969,0.0001281798,0.001772512,0.000004426851,0.00008942739,0.000004691892,0.0002922902,0.000008914376,0.9945472,0.00004532292,0.0002952796,0.002393765],"study_design_scores_gemma":[0.002197948,0.003198833,0.1795676,0.0000841532,0.0001506565,0.002692376,0.002330131,0.0002349171,0.7484968,0.0008665461,0.05962408,0.0005559279],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949535,0.0001118876,0.00007577686,0.002995477,0.0002240529,0.000262356,0.001348678,0.000007036011,0.00002129991],"genre_scores_gemma":[0.9982917,0.00008505366,0.00003566259,0.0004647147,0.0001407396,0.000002172612,0.0009546001,0.000001733508,0.00002358322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2460503,"threshold_uncertainty_score":0.2232182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1920837132","doi":"10.1590/s1517-83822011000400001","title":"Mutacins of Streptococcus mutans","year":2011,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biofilm; Streptococcus mutans; Virulence; Microbiology; Bacteriocin; Saliva; Oral cavity; Colonization; Biology; Early childhood caries; Dental plaque; Bacteria; Medicine; Dentistry; Biochemistry; Antimicrobial; Gene; Oral health","authors":[{"name":"Regianne Umeko Kamiya","is_ca":false},{"name":"Tiago Taiete","is_ca":false},{"name":"Reginaldo Bruno Gonçalves","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03143187936199014,"gpt":0.2861408796774085,"spread":0.2547090003154184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004958733,0.0001642542,0.0005349409,0.0002596427,0.00006021832,0.000007716892,0.0006166014,0.0002973169,0.006906239],"category_scores_gemma":[0.0001576667,0.0001336704,0.0002529049,0.0002177408,0.0005590314,0.0001214348,0.00009670696,0.0004815393,0.0003153267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002919353,"about_ca_system_score_gemma":0.0001855801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003799208,"about_ca_topic_score_gemma":0.0001620746,"domain_scores_codex":[0.9982944,0.0003106439,0.0007945313,0.0001832305,0.0000519932,0.0003652548],"domain_scores_gemma":[0.9985521,0.00008477898,0.0005320754,0.0002707243,0.0004490244,0.0001113314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003490676,0.0001842579,0.09578593,0.00003218301,0.0001908743,0.0004817986,0.0004639052,8.016945e-7,0.894141,0.0002447907,0.005785107,0.002340319],"study_design_scores_gemma":[0.002446394,0.001836914,0.1374552,0.0001250311,0.0000780471,0.010629,0.0005289572,7.253141e-7,0.8085909,0.000456438,0.03754649,0.000305858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945278,0.0008341225,0.0001570246,0.0000498376,0.001031896,0.0001207546,0.0001867052,0.000009677864,0.003082237],"genre_scores_gemma":[0.9977452,0.00005631707,0.0009644933,0.00006773446,0.0001200491,0.000001165026,0.00001343416,0.00001670348,0.001014933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08555007,"threshold_uncertainty_score":0.9940016,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3013694415","doi":"10.1007/s42770-020-00266-5","title":"Antimicrobial activity of protein-containing fractions isolated from Lactobacillus plantarum NRRL B-4496 culture","year":2020,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Lactobacillus plantarum; Listeria monocytogenes; Antimicrobial; Microbiology; Pathogenic bacteria; Preservative; Chemistry; Cytotoxicity; Bacteria; Lactic acid; Sephadex; Food science; Biology; Biochemistry; In vitro; Enzyme","authors":[{"name":"D. Arrioja-Bretón","is_ca":true},{"name":"Emma Mani‐López","is_ca":false},{"name":"Horacio Bach","is_ca":true},{"name":"Aurelio López‐Malo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01589669192571511,"gpt":0.2139396490198985,"spread":0.1980429570941834,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000134661,0.0001890694,0.0004690239,0.00002099805,0.0001225887,0.00002530321,0.0003821438,0.0002686702,0.0003461948],"category_scores_gemma":[0.00006702824,0.00008284397,0.0002313528,0.0002206526,0.0001168118,0.0001435439,0.00008676888,0.0005095207,0.00001780696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002895493,"about_ca_system_score_gemma":0.00004045078,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007202445,"about_ca_topic_score_gemma":0.0001054176,"domain_scores_codex":[0.9987977,0.000153926,0.0004792071,0.0002263771,0.00006310477,0.0002797395],"domain_scores_gemma":[0.998922,0.00007194615,0.0006372086,0.00005031988,0.0001633804,0.0001551802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008582939,0.0001258475,0.001004839,0.000007212006,0.0001276114,0.00002785225,0.0002459584,0.000007321453,0.9913217,0.00001065731,0.001239788,0.005022903],"study_design_scores_gemma":[0.001751632,0.005103434,0.01227708,0.0002145061,0.000127739,0.0004646275,0.0004983137,0.00005734889,0.9223673,0.0001502467,0.05648189,0.0005059101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948679,0.0002679102,0.00009635255,0.003553007,0.0002222373,0.0001642994,0.0006662735,0.00001778402,0.0001442275],"genre_scores_gemma":[0.9986267,0.00005333748,0.0003339477,0.0005367098,0.0003358278,6.166015e-7,0.00008437801,0.000002066372,0.00002643621],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06895445,"threshold_uncertainty_score":0.379059,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2912721795","doi":"10.1007/s42770-018-0010-9","title":"Characterization of multidrug-resistant Gram-negative bacilli isolated from hospitals effluents: first report of a blaOXA-48-like in Klebsiella oxytoca, Algeria","year":2018,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institut National de Santé Publique du Québec","funders":"","keywords":"Klebsiella oxytoca; Microbiology; Biology; Klebsiella pneumoniae; Acinetobacter baumannii; Multiple drug resistance; Antibiotic resistance; Aeromonas; Klebsiella; Enterobacteriaceae; Pseudomonas aeruginosa; Escherichia coli; Drug resistance; Antibiotics; Bacteria; Gene; Genetics","authors":[{"name":"Khadidja Yousfi","is_ca":true},{"name":"Abdelaziz Touati","is_ca":false},{"name":"Brigitte Lefebvre","is_ca":true},{"name":"Philippe Garneau","is_ca":true},{"name":"Soumia Brahmi","is_ca":false},{"name":"Alima Gharout-Sait","is_ca":false},{"name":"Josée Harel","is_ca":true},{"name":"Sadjia Békal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00480284978767908,"gpt":0.2283343352790234,"spread":0.2235314854913443,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000420513,0.0002607127,0.0006811159,0.000161795,0.00004209742,0.00001135031,0.0004085443,0.00036597,0.0001138976],"category_scores_gemma":[0.0003452177,0.0002350799,0.0001993692,0.0001975098,0.0006314379,0.00001851095,0.0001046073,0.0001588028,0.000008720389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004301094,"about_ca_system_score_gemma":0.0001846602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008515696,"about_ca_topic_score_gemma":0.0002242959,"domain_scores_codex":[0.9975463,0.0002117613,0.001472068,0.000373259,0.00009159112,0.0003050427],"domain_scores_gemma":[0.9969279,0.00005056509,0.001875192,0.0004319012,0.0006321667,0.00008222928],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001418821,0.0001536353,0.03168372,0.00003613393,0.0002314367,0.00006614297,0.0002497875,0.0000023757,0.9655276,0.000003160795,0.0004730851,0.0001541165],"study_design_scores_gemma":[0.001569746,0.001022762,0.1120502,0.0002969574,0.0000461074,0.0002265056,0.0001242161,0.000009340324,0.8812957,0.0000331729,0.003100935,0.0002243546],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974909,0.0002244463,0.0008815695,0.00009811486,0.0006916995,0.0002608559,0.0002915684,0.00000348723,0.00005739192],"genre_scores_gemma":[0.9970427,0.0002659756,0.00198264,0.00006568598,0.0001861889,0.000001645492,0.0002952607,0.00002993867,0.0001299235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08423188,"threshold_uncertainty_score":0.9586282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161269906","doi":"10.1590/s1517-83822013005000005","title":"Identification and assessment of kefir yeast potential for sugar/ethanol-resistance","year":2013,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Kluyveromyces marxianus; Kefir; Yeast; Sugar; Saccharomyces cerevisiae; Food science; Biology; Identification (biology); Kluyveromyces; Ethanol; Biotechnology; Biochemistry; Botany; Bacteria; Genetics; Lactic acid","authors":[{"name":"Maria Gabriela C P Miguel","is_ca":false},{"name":"Patrícia Gomes Cardoso","is_ca":false},{"name":"Karina Teixeira Magalhães‐Guedes","is_ca":false},{"name":"Rosane Freitas Schwan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008306536982348133,"gpt":0.2797002344617617,"spread":0.2713936974794136,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002742218,0.00008708081,0.0001718495,0.00006715761,0.00004009315,0.00001687298,0.0001906634,0.0001142254,0.00003674645],"category_scores_gemma":[0.00004521645,0.00007405759,0.0000944927,0.00004060625,0.0001557796,0.000005339519,0.000058248,0.0000892969,0.000002675841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008440051,"about_ca_system_score_gemma":0.0001133168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002075819,"about_ca_topic_score_gemma":0.00000778894,"domain_scores_codex":[0.9991893,0.00007269892,0.0003613519,0.0001534202,0.00005264533,0.0001706132],"domain_scores_gemma":[0.9990797,0.00001510512,0.000257172,0.000137983,0.0004426586,0.00006738697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007838322,0.00004564258,0.0007425838,0.00004611722,0.0000604175,8.284362e-7,0.00001230665,0.00001317089,0.9932594,0.00004157112,0.003779712,0.001919906],"study_design_scores_gemma":[0.000890836,0.0005067518,0.01507935,0.00002468874,0.00002119813,0.0001305262,0.00005760503,0.0000320507,0.9713445,0.0002154439,0.01159262,0.0001044577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927058,0.001653953,0.004490971,0.0005470385,0.000202,0.0002006895,0.00006741765,0.000001091955,0.0001310774],"genre_scores_gemma":[0.9952512,0.0002788908,0.003173182,0.00004330526,0.0001455867,0.00000770758,0.0000341398,0.00001051239,0.001055501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02191488,"threshold_uncertainty_score":0.3019981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3028623056","doi":"10.1007/s42770-020-00294-1","title":"Evaluation of pyroligneous acid as a therapeutic agent against Salmonella in a simulated gastrointestinal tract of poultry","year":2020,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Moringa oleifera research and applications","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Institut National de la Recherche Scientifique; York University; GDG Environnement","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada","keywords":"Salmonella enterica; Lactobacillus acidophilus; Fermentation; Antimicrobial; Acetic acid; Chemistry; Food science; Gastrointestinal tract; Microbiology; Lactic acid; Salmonella; Antibiotics; Bacteria; Probiotic; Biology; Biochemistry","authors":[{"name":"Gayatri Suresh","is_ca":true},{"name":"Hooshang Pakdel","is_ca":false},{"name":"Tarek Rouissi","is_ca":true},{"name":"Satinder Kaur Brar","is_ca":true},{"name":"Moussa S. Diarra","is_ca":true},{"name":"Christian Roy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05020444621752922,"gpt":0.2916389943144988,"spread":0.2414345480969696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008450468,0.00009593411,0.0002734191,0.00003265926,0.00002796102,0.000006473158,0.0002824887,0.00005673638,0.00025949],"category_scores_gemma":[0.0003087684,0.00004271845,0.0001228841,0.0002867889,0.00009391271,0.00003743003,0.00002883904,0.0002060016,0.000009366305],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003216321,"about_ca_system_score_gemma":0.00009421121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001950091,"about_ca_topic_score_gemma":0.00001890653,"domain_scores_codex":[0.9986118,0.0003477136,0.0005327258,0.0001357983,0.0001770774,0.00019487],"domain_scores_gemma":[0.9988782,0.0001596076,0.0003785663,0.00004033037,0.0004325921,0.0001107292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001674395,0.000208922,0.01037873,0.000007591072,0.00001696334,0.00001384252,0.00009492962,0.0006432604,0.9582246,0.000008192234,0.00004192841,0.03019363],"study_design_scores_gemma":[0.004712173,0.01212636,0.4200701,0.0005002684,0.0001992089,0.002228239,0.002922698,0.003681648,0.5493037,0.001306132,0.002443335,0.000506194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975185,0.0005860598,0.00001298438,0.001512,0.00001684594,0.0001942174,0.00002725651,0.000003857029,0.0001283119],"genre_scores_gemma":[0.999587,0.00004802141,0.0001197115,0.0001579616,0.00006454911,0.00000155293,0.00001511171,0.000001079895,0.000004990963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4096913,"threshold_uncertainty_score":0.2841234,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3099396523","doi":"10.1007/s42770-020-00391-1","title":"The frequency of high-risk human papillomavirus types, HPV16 lineages, and their relationship with p16INK4a and NF-κB expression in head and neck squamous cell carcinomas in Southwestern Iran","year":2020,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Vice-Chancellor for Research, Shiraz University of Medical Sciences; Shiraz University; Shiraz University of Medical Sciences","keywords":"Immunohistochemistry; Lineage (genetic); Human papillomavirus; Biology; Head and neck cancer; HPV infection; Phylogenetic tree; Head and neck squamous-cell carcinoma; Cancer; Cancer research; Head and neck; Oncology; Pathology; Gene; Cervical cancer; Internal medicine; Medicine; Immunology; Genetics","authors":[{"name":"Fatemeh Pakdel","is_ca":false},{"name":"Ali Farhadi","is_ca":false},{"name":"Tahereh Pakdel","is_ca":false},{"name":"Azadeh Andishe-Tadbir","is_ca":false},{"name":"Parnian Alavi","is_ca":true},{"name":"Abbas Behzad‐Behbahani","is_ca":false},{"name":"Mohammad Javad Ashraf","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02769060613609468,"gpt":0.27453888063173,"spread":0.2468482744956353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003617081,0.0001294618,0.0003988688,0.0001131474,0.00008088755,0.00001357885,0.00009607457,0.0001224283,0.00004192903],"category_scores_gemma":[0.0001059115,0.0000731755,0.00003040418,0.0001368032,0.000292231,0.00005007979,0.00005909149,0.0006280236,7.45234e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002601978,"about_ca_system_score_gemma":0.00008223194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003297798,"about_ca_topic_score_gemma":0.002248714,"domain_scores_codex":[0.9988904,0.0002265726,0.0004390329,0.0001847555,0.00005877492,0.0002004401],"domain_scores_gemma":[0.9991688,0.0002905794,0.0001963515,0.0001168089,0.00007727991,0.0001501583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009698583,0.00004714774,0.8781883,0.0001195682,0.00001174763,0.00005967531,0.001829735,0.000002950657,0.1156526,0.00001686794,0.00004842307,0.003053125],"study_design_scores_gemma":[0.005841144,0.001873882,0.9818954,0.00009907393,0.00002578126,0.0002170077,0.0005597728,0.000006635465,0.008875048,0.000248193,0.0002722753,0.00008573481],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9855887,0.01301201,0.00001116046,0.001016124,0.00002085998,0.0001889646,0.00002555878,0.000003030318,0.000133561],"genre_scores_gemma":[0.999046,0.0005153566,0.0001962738,0.0001186009,0.00007202616,0.000001707962,0.000007351967,0.0000134659,0.00002918195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1067776,"threshold_uncertainty_score":0.298401,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140937950","doi":"10.1590/s1517-83822010000100035","title":"Isolation and fusion of protoplasts from the phytopathogenic fungus Sclerotium rolfsii (Sacc.)","year":2009,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Environment and Protected Areas","funders":"","keywords":"Protoplast; Sclerotium; Mycelium; Fungus; Sucrose; Biology; Microbiology; Lysis; Isolation (microbiology); Botany; Horticulture; Food science; Biochemistry","authors":[{"name":"Sikandar Hayat","is_ca":true},{"name":"Christos Christias","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005512715242731434,"gpt":0.2124038522552633,"spread":0.2068911370125319,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001970041,0.00008617993,0.0001371327,0.0000316751,0.00004793355,0.000008390348,0.0001186563,0.0001083066,0.00002920991],"category_scores_gemma":[0.00006405351,0.00006122598,0.00006208174,0.00004262022,0.00006329752,0.000007907702,0.00002666455,0.00009631866,0.000001714363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004950865,"about_ca_system_score_gemma":0.00003936189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":9.619094e-7,"about_ca_topic_score_gemma":0.000004778693,"domain_scores_codex":[0.9993257,0.000111406,0.0003013805,0.0001341955,0.00003292557,0.00009441067],"domain_scores_gemma":[0.9993383,0.00001039153,0.0003425857,0.0001350786,0.000142281,0.00003141183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000216729,0.00003544759,0.005500966,0.000003224982,0.0000185874,6.604756e-7,0.00008324237,0.000009241877,0.9868549,0.000006456818,0.0007248899,0.006545685],"study_design_scores_gemma":[0.000725784,0.0007310965,0.1267066,0.00003204443,0.00002425988,0.0002532264,0.00005225509,0.000007231597,0.8597359,0.00007869981,0.01156693,0.00008601917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957598,0.001370134,0.00135072,0.001081891,0.0002447871,0.0001496458,0.00001966515,0.00000217716,0.00002114588],"genre_scores_gemma":[0.9981783,0.0002979405,0.00057947,0.0003922835,0.0004240176,0.000001048204,0.00005654529,0.000005725582,0.00006469065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.127119,"threshold_uncertainty_score":0.2496723,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4237195062","doi":"10.1590/s1517-83822012000300012","title":"Detection of Mogibacterium timidum in subgingival biofilm of aggressive and non-diabetic and diabetic chronic periodontitis patients","year":2012,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Otolaryngology and Infectious Diseases","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Chronic periodontitis; Glycated hemoglobin; Diabetes mellitus; Internal medicine; Aggressive periodontitis; Dentistry; Periodontitis; Type 2 Diabetes Mellitus; Gastroenterology; Type 2 diabetes; Endocrinology","authors":[{"name":"Renato Côrrea Viana Casarin","is_ca":false},{"name":"Daniel Saito","is_ca":false},{"name":"Vanessa Renata Santos","is_ca":false},{"name":"Suzana Peres Pimentel","is_ca":false},{"name":"Poliana Mendes Duarte","is_ca":false},{"name":"Márcio Zaffalon Casati","is_ca":false},{"name":"Reginaldo Bruno Gonçalves","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003732439404573273,"gpt":0.2140203566708506,"spread":0.2102879172662773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001736508,0.0001130036,0.0004789894,0.0002683817,0.000025542,0.000002454224,0.00004479821,0.0001477083,0.00006116494],"category_scores_gemma":[0.0001745908,0.00009486441,0.00006984769,0.00008986982,0.0003733359,0.000113167,0.00003437737,0.0001858617,0.00000154713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004420188,"about_ca_system_score_gemma":0.00007223134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009622539,"about_ca_topic_score_gemma":0.00001124905,"domain_scores_codex":[0.9991164,0.0001076971,0.0004208802,0.00009828766,0.00003321616,0.0002235239],"domain_scores_gemma":[0.9989935,0.00005955269,0.000628127,0.00008271589,0.0001298882,0.0001062405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000109483,0.0001513997,0.5974266,0.0001458596,0.0000504076,0.000005168292,0.000158874,2.930107e-7,0.4005088,6.858259e-7,0.00001903591,0.001423381],"study_design_scores_gemma":[0.002282094,0.001940402,0.878835,0.0002851076,0.0001115659,0.0005118867,0.00003598308,0.000004306468,0.1158559,0.000006188023,0.00006499124,0.00006658796],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940169,0.005406719,0.000007759179,0.00004577456,0.0003224742,0.0001498218,0.0000198355,0.00000242211,0.00002823905],"genre_scores_gemma":[0.9993964,0.0004047191,0.00005077052,0.00004209999,0.00007767572,0.000001693782,0.000007251419,0.000009615486,0.000009720289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2846529,"threshold_uncertainty_score":0.3868458,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2792025231","doi":"10.1016/j.bjm.2017.12.008","title":"Histophilus somni -associated syndromes in sheep from Southern Brazil","year":2018,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Pasteurella multocida; Meningoencephalitis; Pathological; Myocarditis; Disease; Pasteurellaceae; Respiratory disease; Biology; Pneumonia; Lung; Medicine; Pathology; Immunology; Microbiology; Internal medicine; Bacteria; Antibiotics; Haemophilus influenzae","authors":[{"name":"Selwyn Arlington Headley","is_ca":false},{"name":"Alfredo Hajime Tanaka Pereira","is_ca":false},{"name":"Luciana C. Balbo","is_ca":false},{"name":"Giovana W. Di Santia","is_ca":false},{"name":"A.P.F.R.L. Bracarense","is_ca":false},{"name":"Luiz Fernando Coelho da Cunha Filho","is_ca":false},{"name":"Jackson Schade","is_ca":false},{"name":"Werner Okano","is_ca":false},{"name":"Priscilla Fajardo Valente Pereira","is_ca":false},{"name":"Fábio Morotti","is_ca":false},{"name":"Lucienne G. Preto-Giordano","is_ca":false},{"name":"Rogério Anderson Marcasso","is_ca":false},{"name":"Alice Fernandes Alfieri","is_ca":false},{"name":"Júlio Augusto Naylor Lisbôa","is_ca":false},{"name":"Amauri Alcindo Alfieri","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01383636936151297,"gpt":0.2680060581051227,"spread":0.2541696887436098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007140493,0.0002541317,0.00065015,0.0005336607,0.0001994357,0.00002484726,0.0005199059,0.0005035272,0.007440112],"category_scores_gemma":[0.000347666,0.0002188582,0.0002730638,0.0003475508,0.0008651007,0.0001221492,0.0001320884,0.0006793705,0.002094057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002353499,"about_ca_system_score_gemma":0.0003233783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006418071,"about_ca_topic_score_gemma":0.001387605,"domain_scores_codex":[0.9974485,0.0006517229,0.0008412612,0.0003319691,0.00002907118,0.0006974855],"domain_scores_gemma":[0.998602,0.0002254087,0.0004369177,0.0002891075,0.0003600656,0.00008652486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000404575,0.0004324856,0.009119166,0.000006064457,0.0003058241,0.00009305594,0.0007560585,0.000002517854,0.9720863,0.00005613676,0.01422734,0.002510499],"study_design_scores_gemma":[0.03365393,0.007109504,0.09607974,0.001077881,0.0005511201,0.01000828,0.003830369,0.00001252151,0.4042891,0.006578907,0.4342814,0.002527189],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992641,0.004066551,0.00005947255,0.0006052919,0.001603221,0.0001412934,0.0003071033,0.00002745056,0.0005486248],"genre_scores_gemma":[0.9975273,0.00009007888,0.00007148581,0.0003593948,0.0001826004,0.000002628858,0.0001159401,0.00002810288,0.001622439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5677972,"threshold_uncertainty_score":0.9986829,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4321479827","doi":"10.1007/s42770-023-00920-8","title":"Heat-resistant and biofilm-forming Escherichia coli in pasteurized milk from Brazil","year":2023,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Lethbridge","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Pasteurization; Escherichia coli; Pulsed-field gel electrophoresis; rpoS; Antibiotic resistance; Biology; Biofilm; Microbiology; Antimicrobial; Nalidixic acid; Food science; Enterobacteriaceae; Genotype; Antibiotics; Bacteria; Gene","authors":[{"name":"Maxsueli Aparecida Moura Machado","is_ca":false},{"name":"Vinícius Silva Castro","is_ca":true},{"name":"Adelino Cunha Neto","is_ca":false},{"name":"Deyse Christina Vallim","is_ca":false},{"name":"Rodrigo de Castro Lisbôa Pereira","is_ca":false},{"name":"Jaqueline Oliveira dos Reis","is_ca":false},{"name":"Patrícia Veiga de Almeida","is_ca":false},{"name":"Diego Galvan","is_ca":false},{"name":"Carlos Adam Conte‐Júnior","is_ca":false},{"name":"Eduardo Eustáquio de Souza Figueiredo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01786501035799829,"gpt":0.2385840632689796,"spread":0.2207190529109813,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007660536,0.0001904778,0.0005746166,0.00006954893,0.00009151469,0.00002302512,0.0003115298,0.0002402119,0.0002581336],"category_scores_gemma":[0.0001687816,0.00008175993,0.0001352285,0.0004410283,0.0001682427,0.00009103388,0.0001052107,0.0002894952,0.00004791557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002843893,"about_ca_system_score_gemma":0.00002363347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002213208,"about_ca_topic_score_gemma":0.0007227784,"domain_scores_codex":[0.9981204,0.0003927073,0.0006990188,0.0002797324,0.00005301494,0.0004551458],"domain_scores_gemma":[0.9988388,0.0007233392,0.0001774662,0.0000605643,0.00005889365,0.0001409722],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002612236,0.0000302573,0.0411072,0.000003019822,0.00002851246,0.00008719637,0.00009737848,0.00000195832,0.9494664,0.00001020143,0.001548554,0.007358073],"study_design_scores_gemma":[0.001340398,0.0007842715,0.9147643,0.00009652331,0.0000276474,0.0002330802,0.0007709929,0.00002652206,0.02615998,0.0008584947,0.05461077,0.0003269555],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949255,0.001202543,0.000001482446,0.003140011,0.0004527677,0.0001008626,0.00007811109,0.00002529831,0.0000734186],"genre_scores_gemma":[0.9980679,0.0005169941,0.0001892363,0.0007734188,0.0002817348,0.000002284353,0.00007449884,0.000002355623,0.00009156133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9233065,"threshold_uncertainty_score":0.3334073,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4328048779","doi":"10.1007/s42770-023-00918-2","title":"Molecular characterization of persistent subclinical mastitis-causing Staphylococcus aureus from dairy farms","year":2023,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Staphylococcus aureus; Mastitis; Pulsed-field gel electrophoresis; Herd; Veterinary medicine; Biology; Subclinical infection; Dairy cattle; Medicine; Microbiology; Animal science; Virology; Genotype; Bacteria; Genetics","authors":[{"name":"Juliano Leonel Gonçalves","is_ca":false},{"name":"Sarah H. I. Lee","is_ca":false},{"name":"Carlos Henrique Camargo","is_ca":false},{"name":"Rosemeire Cobo Zanella","is_ca":false},{"name":"Nathália Cristina Cirone Silva","is_ca":false},{"name":"Vera Lúcia Mores Rall","is_ca":false},{"name":"R.I. Cue","is_ca":true},{"name":"Marcos Veiga dos Santos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02717486314168438,"gpt":0.2500199636088712,"spread":0.2228451004671868,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005089908,0.0001400268,0.0003945263,0.00004708984,0.00008011725,0.00001947809,0.0003177506,0.0001933244,0.0006086836],"category_scores_gemma":[0.0001634253,0.00006680513,0.0004050116,0.0002904136,0.000183004,0.00009114756,0.0001074309,0.0002225234,0.00003291578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002177954,"about_ca_system_score_gemma":0.00003019189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002463914,"about_ca_topic_score_gemma":0.00005543497,"domain_scores_codex":[0.9984089,0.0002861204,0.0007285895,0.0002102503,0.0001051608,0.0002609841],"domain_scores_gemma":[0.9988996,0.000228422,0.0005195498,0.00007593093,0.0001746406,0.0001018954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009928475,0.00006211074,0.001864963,0.000009714157,0.00008491621,0.00008015113,0.0001251027,0.00003428488,0.9880067,0.00004359393,0.0005848434,0.00900431],"study_design_scores_gemma":[0.003045304,0.004006268,0.3305543,0.0008040813,0.0004056366,0.0005017515,0.002446843,0.0002432193,0.4935124,0.001743379,0.1615117,0.001225136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967181,0.0002408755,0.00008444232,0.001654504,0.0007189949,0.00009863738,0.0004195389,0.00002129113,0.00004360476],"genre_scores_gemma":[0.9985623,0.0001949914,0.0001195173,0.0003437517,0.0003294727,0.000001150058,0.0003737787,0.000001950422,0.00007310235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4944944,"threshold_uncertainty_score":0.6664659,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156338199","doi":"10.1590/s1517-83822013005000035","title":"Molecular approach to characterize ectomycorrhizae fungi from Mediterranean pine stands in Portugal","year":2013,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Ectomycorrhizae; Biology; Botany; Pisolithus; Mycelium; Pinus <genus>; Basidiomycota; Fungus; Mycorrhiza; Lactarius; Symbiosis; Bacteria","authors":[{"name":"Carla Ragonezi","is_ca":false},{"name":"Ana Teresa Caldeira","is_ca":false},{"name":"M. Rosário Martins","is_ca":false},{"name":"Cátia Salvador","is_ca":false},{"name":"Celeste Santos-Silva","is_ca":false},{"name":"Elsa Ganhão","is_ca":false},{"name":"Krystyna Klimaszewska","is_ca":true},{"name":"Maria Amely Zavattieri","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01236414816687661,"gpt":0.202115234924906,"spread":0.1897510867580294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002320153,0.0001979042,0.0004176467,0.00008181992,0.00005062009,0.00004932845,0.0004362166,0.000165961,0.007922332],"category_scores_gemma":[0.000124473,0.0000853372,0.0001583089,0.0001884037,0.00001304134,0.000187442,0.00005900612,0.0003548524,0.0004441562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003792466,"about_ca_system_score_gemma":0.00002115825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004313875,"about_ca_topic_score_gemma":0.00007737617,"domain_scores_codex":[0.9985207,0.000174185,0.0006062185,0.0002516972,0.00008633759,0.0003609013],"domain_scores_gemma":[0.9988505,0.0004546147,0.000250738,0.00007342635,0.0001388037,0.0002319087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001258402,0.0001272347,0.01071698,0.000002896583,0.00002952194,0.00004804055,0.0001523571,0.000006576289,0.9670718,0.00001879818,0.01214607,0.009553921],"study_design_scores_gemma":[0.001418381,0.003644967,0.4701319,0.0005940406,0.0001138191,0.006057761,0.001528685,0.0002412667,0.1429394,0.0012507,0.3703769,0.001702198],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946969,0.0006252275,0.00008002325,0.001481039,0.0006446253,0.0002301221,0.001158347,0.00001391142,0.001069846],"genre_scores_gemma":[0.9958537,0.0001872802,0.0006068006,0.001420452,0.0004780396,0.000008426283,0.001334336,0.000002595064,0.0001084168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8241324,"threshold_uncertainty_score":0.9929845,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388036489","doi":"10.1007/s42770-023-01159-z","title":"Molecular characterization of Newcastle disease virus obtained from Mawenzi live bird market in Morogoro, Tanzania in 2020–2021","year":2023,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Future Earth","funders":"National Research Foundation; United States Agency for International Development","keywords":"Newcastle disease; Tanzania; Genotype; Phylogenetic tree; Virology; Biology; Virus; Polymerase chain reaction; Veterinary medicine; Geography; Medicine; Gene; Genetics","authors":[{"name":"Célia Abolnik","is_ca":false},{"name":"T. Ross Kelly","is_ca":false},{"name":"Augustino A. Chengula","is_ca":false},{"name":"James Richard Mushi","is_ca":false},{"name":"Peter L. M. Msoffe","is_ca":false},{"name":"Amandus P. Muhairwa","is_ca":false},{"name":"Thandeka Phiri","is_ca":false},{"name":"Rachel Jude","is_ca":false},{"name":"Nadira Chouicha","is_ca":false},{"name":"Esther L. Mollel","is_ca":false},{"name":"Huaijun Zhou","is_ca":false},{"name":"Rodrigo A. Gallardo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008651648259451378,"gpt":0.2534641113279103,"spread":0.2448124630684589,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002750307,0.0001577723,0.0005249258,0.0003753382,0.00001717525,0.000004357406,0.0001552615,0.0001666789,0.001270275],"category_scores_gemma":[0.0003059612,0.0001417231,0.0001530546,0.0004024851,0.0001323377,0.00008735147,0.00005554239,0.000270621,0.00009420138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004797505,"about_ca_system_score_gemma":0.0002159207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004630697,"about_ca_topic_score_gemma":0.00008263169,"domain_scores_codex":[0.9984818,0.0003211982,0.0006557244,0.0002112076,0.00006538616,0.0002646532],"domain_scores_gemma":[0.9991665,0.00008200048,0.0003187461,0.0001805751,0.00009112062,0.0001610715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002794055,0.0002238742,0.1790689,0.00003769385,0.00007337448,0.002486193,0.0001490212,0.00001554974,0.8133868,0.000006838783,0.0007441029,0.001013559],"study_design_scores_gemma":[0.002966667,0.0003814861,0.9809172,0.0002644243,0.0001002095,0.00009637664,0.0001146076,0.0001241113,0.01416866,0.0002114368,0.0005364633,0.000118406],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996906,0.0007898267,0.00002745944,0.001565809,0.0002249616,0.0001920259,0.0002510635,0.00001217517,0.00003062548],"genre_scores_gemma":[0.9983656,0.0004833493,0.00007201707,0.0006196963,0.0001074211,0.00000365442,0.0002021612,0.00002526743,0.0001208021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8018482,"threshold_uncertainty_score":0.9996427,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3199059011","doi":"10.1007/s42770-021-00559-3","title":"Optimization of bioprocess of Schleiferilactobacillus harbinensis Ca12 and its viability in frozen Brazilian berries (Açai, Euterpe oleracea Mart.)","year":2021,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Food science; Probiotic; Functional food; Antioxidant; Biology; Bioprocess; Fermentation; Nutraceutical; Biotechnology; Chemistry; Biochemistry; Bacteria","authors":[{"name":"Heloísa Carneiro Colares","is_ca":false},{"name":"Gabriele Moreira Guimarães","is_ca":false},{"name":"Carolina Alves Petit Couto","is_ca":false},{"name":"Priscilla Oliveira Gil","is_ca":false},{"name":"Stephanie Lourrani Evangelista Neve Santos","is_ca":false},{"name":"Tuânia Natacha Lopes Silva","is_ca":false},{"name":"Iracema Luisa Quintino de Carvalho","is_ca":false},{"name":"Flávio Guimarães da Fonseca","is_ca":false},{"name":"Mérilie Gagnon","is_ca":true},{"name":"Denis Roy","is_ca":true},{"name":"Juliana Teixeira de Magalhães","is_ca":false},{"name":"Daniel Bonoto Gonçalves","is_ca":false},{"name":"Paulo Afonso Granjeiro","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01006365589450221,"gpt":0.2132934417257816,"spread":0.2032297858312794,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004078818,0.0001631856,0.0005453925,0.00005738851,0.0000522192,0.0000195085,0.000229867,0.0002083732,0.0003137796],"category_scores_gemma":[0.0001817545,0.00008117675,0.00012246,0.0003855253,0.0002022844,0.0001777346,0.0001191783,0.00020143,0.000001021541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000271181,"about_ca_system_score_gemma":0.00006275476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002144608,"about_ca_topic_score_gemma":0.0002366576,"domain_scores_codex":[0.9985127,0.000143484,0.0007920071,0.0002396971,0.00007509072,0.0002369778],"domain_scores_gemma":[0.9987037,0.0001155115,0.0005194355,0.00007046225,0.0005003402,0.00009062026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001953671,0.0002065097,0.02073824,0.00006493727,0.00005029745,0.00001602656,0.0001473773,0.0002210973,0.9753674,0.00004150735,0.00005257799,0.002898701],"study_design_scores_gemma":[0.001978079,0.001875169,0.2379595,0.0004578116,0.00009715089,0.0007966695,0.001137598,0.0004923677,0.7513976,0.0004120334,0.002882065,0.0005139685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963344,0.001677979,0.0000239824,0.001434404,0.0001694999,0.0001102376,0.0001724625,0.000004561373,0.00007251718],"genre_scores_gemma":[0.9985221,0.000392375,0.0008153837,0.0001308914,0.00005013271,6.989168e-7,0.00004822884,0.000001853321,0.00003831082],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2239698,"threshold_uncertainty_score":0.3435667,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4220770789","doi":"10.1007/s42770-022-00717-1","title":"Incidence and geographical distribution of tuberculosis disease in Erbil city, Iraq","year":2022,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Geography; Quarter (Canadian coin); Residence; Tuberculosis; Epidemiology; Distribution (mathematics); Socioeconomics; Demography; Environmental health; Medicine; Pathology","authors":[{"name":"Salah Tofik Jalal Balaky","is_ca":false},{"name":"Arthur Saniotis","is_ca":false},{"name":"Ahang Hasan Mawlood","is_ca":false},{"name":"Ali M. Hussein","is_ca":false},{"name":"Nazar P. Shabila","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01390764624660663,"gpt":0.2933872627913796,"spread":0.279479616544773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001378388,0.0001107125,0.0005404309,0.0003098046,0.00006847158,0.00000316226,0.0001743838,0.00008158406,0.0002752166],"category_scores_gemma":[0.001306909,0.00009208706,0.0001728555,0.0003338954,0.0003966277,0.00005511774,0.000214913,0.0006780777,0.00000148962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001024704,"about_ca_system_score_gemma":0.0002199596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009975127,"about_ca_topic_score_gemma":0.00004384548,"domain_scores_codex":[0.9981148,0.000590775,0.0006648546,0.0001929347,0.0001162717,0.0003203959],"domain_scores_gemma":[0.9988578,0.0003359879,0.000234413,0.0001590043,0.0001348953,0.0002779303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001480098,0.0002750448,0.9269814,0.00005811183,0.00007860996,0.0002416519,0.00005227283,0.00004237298,0.06569063,0.0001738382,0.0036131,0.001312911],"study_design_scores_gemma":[0.001412396,0.001318657,0.9869123,0.0000847238,0.00006618589,0.002530198,0.00009671375,0.00005004611,0.0005967913,0.0004802081,0.006361883,0.00008991074],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986779,0.003082594,0.00004524336,0.009690479,0.0001023896,0.0001428363,0.000133093,0.000003756895,0.00002058364],"genre_scores_gemma":[0.9984431,0.0006943467,0.0001199671,0.0005919415,0.00005361768,0.000006161276,0.00006299833,0.000006983675,0.00002085382],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06509384,"threshold_uncertainty_score":0.3755201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408884775","doi":"10.1007/s42770-025-01660-7","title":"Bartonella spp., Coxiella burnetii and Rickettsia rickettsii in urban bats: molecular investigation of neglected zoonoses in Brazil","year":2025,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Bartonella species infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Coxiella burnetii; Bartonella; Rickettsia rickettsii; Biology; Bartonella henselae; Virology; Q fever; Cat-scratch disease; Rocky Mountain spotted fever; Spotted fever; Polymerase chain reaction; Veterinary medicine; Rickettsia; Serology; Disease; Medicine; Immunology; Virus","authors":[{"name":"Danilo Alves de França","is_ca":false},{"name":"Alana Vitor Barbosa da Costa","is_ca":false},{"name":"Leandro Meneguelli Biondo","is_ca":true},{"name":"Ana Íris de Lima Duré","is_ca":false},{"name":"Benedito Donizete Menozzi","is_ca":false},{"name":"Felipe Fornazari","is_ca":false},{"name":"Hélio Langoni","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007094965335646764,"gpt":0.2559137356248453,"spread":0.2488187702891985,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000657779,0.0002656127,0.0007710721,0.001646963,0.00007501952,0.0000165624,0.0004228137,0.0005472903,0.000413474],"category_scores_gemma":[0.0005128613,0.0002542794,0.0001318902,0.00117719,0.001190322,0.0001156529,0.0001813475,0.0009709173,0.00003786274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001564599,"about_ca_system_score_gemma":0.0003792476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001346387,"about_ca_topic_score_gemma":0.0002342703,"domain_scores_codex":[0.9967918,0.001068619,0.001233818,0.000352823,0.00003978913,0.0005131073],"domain_scores_gemma":[0.9984531,0.0004865732,0.0004198306,0.0002982356,0.000291988,0.00005023627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000331523,0.0001346249,0.0771663,0.00006030062,0.0001434567,0.00004923092,0.0004023322,0.00003918536,0.9103287,0.0006228095,0.009457565,0.001263898],"study_design_scores_gemma":[0.006024173,0.0007762889,0.2171937,0.0005065069,0.0000631159,0.001261466,0.0005059349,0.00001072906,0.7486391,0.001369639,0.02330314,0.0003462029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9832231,0.01339898,0.0001167606,0.0009526935,0.0005105329,0.0002927165,0.00002170147,0.00001199194,0.001471561],"genre_scores_gemma":[0.9979777,0.000662817,0.0002841008,0.000280739,0.00002114142,0.000005926825,0.00003256375,0.00001751431,0.0007174785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1616896,"threshold_uncertainty_score":0.9999909,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4393255099","doi":"10.1007/s42770-024-01314-0","title":"Insights on the genomic diversity, virulence and resistance profile of a Campylobacter jejuni strain isolated from a hospitalized patient in Brazil","year":2024,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo; Public Health Agency; Public Health Agency of Canada","keywords":"Prophage; Biology; Microbiology; Multilocus sequence typing; Virulence; Campylobacteriosis; Campylobacter jejuni; Campylobacter; Antibiotic resistance; Nalidixic acid; Genetics; Gene; Bacteria; Genotype; Antibiotics; Escherichia coli","authors":[{"name":"Carolina Nogueira Gomes","is_ca":false},{"name":"Miliane Rodrigues Frazão","is_ca":false},{"name":"Amanda Aparecida Seribelli","is_ca":false},{"name":"Dillon Barker","is_ca":true},{"name":"Emily Victoria","is_ca":true},{"name":"Mara Corrëa Lelles Nogueira","is_ca":false},{"name":"Eduardo N. Taboada","is_ca":true},{"name":"Juliana Pfrimer Falcão","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01164683398340101,"gpt":0.2083935330044091,"spread":0.1967466990210081,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002903429,0.0001609409,0.0003817965,0.00004691437,0.00008929881,0.00002215921,0.000356678,0.0001615448,0.0002829165],"category_scores_gemma":[0.00007626812,0.00005808656,0.0001210546,0.0001853433,0.0002423396,0.00007722666,0.0001824908,0.0002965835,0.00001279692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004131926,"about_ca_system_score_gemma":0.00002534748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001142171,"about_ca_topic_score_gemma":0.0007384163,"domain_scores_codex":[0.9984751,0.0004597812,0.0005239907,0.000262623,0.000059106,0.0002194468],"domain_scores_gemma":[0.9988226,0.0007072893,0.0002740152,0.00007070301,0.00006262616,0.00006281779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004185811,0.00008660062,0.01624168,0.00001047603,0.00007135687,0.00008052718,0.001134992,0.000001196885,0.9758034,0.0004311851,0.001397533,0.004322434],"study_design_scores_gemma":[0.0008571665,0.00285837,0.95288,0.0007144015,0.00006798851,0.000181542,0.001242915,0.00002701,0.009422967,0.01565463,0.01564068,0.0004523759],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993948,0.002763978,0.000001936576,0.002461398,0.0002538548,0.0001649197,0.0002574541,0.000008822415,0.0001396156],"genre_scores_gemma":[0.9989758,0.0002671669,0.00007274839,0.000546823,0.00007050921,0.00000187733,0.00002368711,0.000001577961,0.00003988167],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9663805,"threshold_uncertainty_score":0.3097737,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4403634200","doi":"10.1007/s42770-024-01548-y","title":"Economic impact of staphylococcal and mammaliicoccal subclinical mastitis in dairy herds from Northeast Brazil","year":2024,"lang":"en","type":"article","venue":"Brazilian Journal of Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; North Carolina State University","keywords":"Subclinical infection; Mastitis; Herd; Veterinary medicine; Staphylococcus aureus; Dairy cattle; Geography; Biology; Medicine; Animal science; Microbiology; Virology; Bacteria","authors":[{"name":"Amanda Thaís Ferreira Silva","is_ca":false},{"name":"Juliano Leonel Gonçalves","is_ca":false},{"name":"Marcos Veiga dos Santos","is_ca":false},{"name":"Rodolfo de Moraes Peixoto","is_ca":false},{"name":"R.I. Cue","is_ca":true},{"name":"Rinaldo Aparecido Mota","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01409688082967544,"gpt":0.2769063448270816,"spread":0.2628094639974062,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006101716,0.0001799377,0.0005273762,0.00006031954,0.0000373915,0.00003973566,0.000308137,0.0002307478,0.001542075],"category_scores_gemma":[0.00007094529,0.00007966683,0.0003145591,0.0001247767,0.0003323411,0.0001542658,0.0001026472,0.0003943684,0.00002661915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008548468,"about_ca_system_score_gemma":0.0001199913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006696078,"about_ca_topic_score_gemma":0.004595018,"domain_scores_codex":[0.9982502,0.0002776543,0.0008657783,0.0002772566,0.0000505904,0.0002784867],"domain_scores_gemma":[0.9988978,0.0006389397,0.0002129111,0.00006292647,0.00004301991,0.0001443936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008304541,0.0001786856,0.2959079,0.000047293,0.0002486377,0.0003271871,0.0003620119,0.00009059192,0.6088721,0.0004399546,0.006427824,0.08626738],"study_design_scores_gemma":[0.001265574,0.002438112,0.9596865,0.0004713125,0.00005753681,0.001240429,0.0003045256,0.0001188548,0.002725599,0.002790264,0.0284643,0.0004370502],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952201,0.002367035,0.00001195671,0.0007725789,0.0005596527,0.00008112787,0.0008705219,0.00001058889,0.0001064865],"genre_scores_gemma":[0.9988416,0.0003765928,0.0001344523,0.00006114368,0.000474004,0.000001003981,0.00005819062,0.000002219867,0.00005081372],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6637785,"threshold_uncertainty_score":0.9993706,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}