{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":60,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":60,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"9e7362cce5c9","filters":{"venue":"Cell Genomics"}},"results":[{"id":"W4304695497","doi":"10.1016/j.xgen.2022.100192","title":"Global Biobank Meta-analysis Initiative: Powering genetic discovery across human disease","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":407,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Medical Research Council; Novo Nordisk Fonden; Wellcome Trust; Cooley's Anemia Foundation; National Human Genome Research Institute; Biogen; U.S. Department of Veterans Affairs","keywords":"Biobank; Genome-wide association study; Genetic association; Disease; Meta-analysis; Data science; Biology; Computational biology; Genetics; Computer science; Medicine; Gene; Genotype; Single-nucleotide polymorphism","authors":[{"name":"Wei Zhou","is_ca":false},{"name":"Masahiro Kanai","is_ca":false},{"name":"Kuan-Han Wu","is_ca":false},{"name":"Humaira Rasheed","is_ca":false},{"name":"Kristin Tsuo","is_ca":false},{"name":"Jibril Hirbo","is_ca":false},{"name":"Ying Wang","is_ca":false},{"name":"Arjun Bhattacharya","is_ca":false},{"name":"Huiling Zhao","is_ca":false},{"name":"Shinichi Namba","is_ca":false},{"name":"Ida Surakka","is_ca":false},{"name":"Brooke N. Wolford","is_ca":false},{"name":"Valeria Lo Faro","is_ca":false},{"name":"Esteban A. Lopera-Maya","is_ca":false},{"name":"Kristi Läll","is_ca":false},{"name":"Marie-Julie Favé","is_ca":true},{"name":"Juulia Partanen","is_ca":false},{"name":"Sinéad B. Chapman","is_ca":false},{"name":"Juha Karjalainen","is_ca":false},{"name":"Mitja Kurki","is_ca":false},{"name":"Mutaamba Maasha","is_ca":false},{"name":"Ben Brumpton","is_ca":false},{"name":"Sameer Chavan","is_ca":false},{"name":"Tzu‐Ting Chen","is_ca":false},{"name":"Michelle Daya","is_ca":false},{"name":"Yi Ding","is_ca":false},{"name":"Yen‐Chen Anne Feng","is_ca":false},{"name":"Lindsay Guare","is_ca":false},{"name":"Christopher R. Gignoux","is_ca":false},{"name":"Sarah E. Graham","is_ca":false},{"name":"Whitney Hornsby","is_ca":false},{"name":"Nathan Ingold","is_ca":false},{"name":"Said I. Ismail","is_ca":false},{"name":"Ruth Johnson","is_ca":false},{"name":"Triin Laisk","is_ca":false},{"name":"Kuang Lin","is_ca":false},{"name":"Jun Lv","is_ca":false},{"name":"Iona Y. Millwood","is_ca":false},{"name":"Sonia Moreno–Grau","is_ca":false},{"name":"Kisung Nam","is_ca":false},{"name":"Priit Palta","is_ca":false},{"name":"Anita Pandit","is_ca":false},{"name":"Michael Preuß","is_ca":false},{"name":"Chadi Saad","is_ca":false},{"name":"Shefali Setia-Verma","is_ca":false},{"name":"Unnur Þorsteinsdóttir","is_ca":false},{"name":"Jasmina Uzunović","is_ca":true},{"name":"Anurag Verma","is_ca":false},{"name":"Matthew Zawistowski","is_ca":false},{"name":"Xue Zhong","is_ca":false},{"name":"Nahla Afifi","is_ca":false},{"name":"Kawthar Al-Dabhani","is_ca":false},{"name":"Asma Al Thani","is_ca":false},{"name":"Yuki Bradford","is_ca":false},{"name":"Archie Campbell","is_ca":false},{"name":"Kristy Crooks","is_ca":false},{"name":"Geertruida H. de Bock","is_ca":false},{"name":"Scott M. Damrauer","is_ca":false},{"name":"Nicholas J. Douville","is_ca":false},{"name":"Sarah Finer","is_ca":false},{"name":"Lars G. Fritsche","is_ca":false},{"name":"Eleni Fthenou","is_ca":false},{"name":"Gilberto Gonzalez-Arroyo","is_ca":false},{"name":"Chris Griffiths","is_ca":false},{"name":"Yu Guo","is_ca":false},{"name":"Karen A. Hunt","is_ca":false},{"name":"Alexander Ioannidis","is_ca":false},{"name":"Nomdo M. Jansonius","is_ca":false},{"name":"Takahiro Konuma","is_ca":false},{"name":"Ming Ta Michael Lee","is_ca":false},{"name":"Arturo Lopez-Pineda","is_ca":false},{"name":"Yuta Matsuda","is_ca":false},{"name":"Riccardo E. Marioni","is_ca":false},{"name":"Babak Moatamed","is_ca":false},{"name":"Marco A. Nava-Aguilar","is_ca":false},{"name":"Kensuke Numakura","is_ca":false},{"name":"Snehal Patil","is_ca":false},{"name":"Nicholas Rafaels","is_ca":false},{"name":"Anne Richmond","is_ca":false},{"name":"Agustin Rojas‐Muñoz","is_ca":false},{"name":"Jonathan Shortt","is_ca":false},{"name":"Péter Straub","is_ca":false},{"name":"Ran Tao","is_ca":false},{"name":"Brett Vanderwerff","is_ca":false},{"name":"Manvi Vernekar","is_ca":false},{"name":"Yogasudha Veturi","is_ca":false},{"name":"Kathleen C. Barnes","is_ca":false},{"name":"Marike Boezen","is_ca":false},{"name":"Zhengming Chen","is_ca":false},{"name":"Chia‐Yen Chen","is_ca":false},{"name":"Judy H. Cho","is_ca":false},{"name":"George Davey Smith","is_ca":false},{"name":"Hilary K. Finucane","is_ca":false},{"name":"Lude Franke","is_ca":false},{"name":"Eric R. Gamazon","is_ca":false},{"name":"Andrea Ganna","is_ca":false},{"name":"Tom R. Gaunt","is_ca":false},{"name":"Tian Ge","is_ca":false},{"name":"Hailiang Huang","is_ca":false},{"name":"Jennifer E. Huffman","is_ca":false},{"name":"Nicholas Katsanis","is_ca":false},{"name":"Jukka Koskela","is_ca":false},{"name":"Clara Lajonchere","is_ca":false},{"name":"Matthew H. Law","is_ca":false},{"name":"Liming Li","is_ca":false},{"name":"Cecilia M. Lindgren","is_ca":false},{"name":"Ruth J. F. Loos","is_ca":false},{"name":"Stuart MacGregor","is_ca":false},{"name":"Koichi Matsuda","is_ca":false},{"name":"Catherine M. Olsen","is_ca":false},{"name":"David J. Porteous","is_ca":false},{"name":"Jordan A. Shavit","is_ca":false},{"name":"Harold Snieder","is_ca":false},{"name":"Tomohiro Takano","is_ca":false},{"name":"Richard C. Trembath","is_ca":false},{"name":"Judith M. Vonk","is_ca":false},{"name":"David C. Whiteman","is_ca":false},{"name":"Stephen J. Wicks","is_ca":false},{"name":"Cisca Wijmenga","is_ca":false},{"name":"John Wright","is_ca":false},{"name":"Jie Zheng","is_ca":false},{"name":"Xiang Zhou","is_ca":false},{"name":"Philip Awadalla","is_ca":true},{"name":"Michael Boehnke","is_ca":false},{"name":"Carlos D. Bustamante","is_ca":false},{"name":"Nancy J. Cox","is_ca":false},{"name":"Segun Fatumo","is_ca":false},{"name":"Daniel H. Geschwind","is_ca":false},{"name":"Caroline Hayward","is_ca":false},{"name":"Kristian Hveem","is_ca":false},{"name":"Eimear E. Kenny","is_ca":false},{"name":"Seunggeun Lee","is_ca":false},{"name":"Hamdi Mbarek","is_ca":false},{"name":"Reedik Mägi","is_ca":false},{"name":"Hilary C. Martin","is_ca":false},{"name":"Sarah E. Medland","is_ca":false},{"name":"Yukinori Okada","is_ca":false},{"name":"Aarno Palotie","is_ca":false},{"name":"Bogdan Paşaniuc","is_ca":false},{"name":"Daniel J. Rader","is_ca":false},{"name":"Marylyn D. Ritchie","is_ca":false},{"name":"Serena Sanna","is_ca":false},{"name":"Jordan W. Smoller","is_ca":false},{"name":"Kāri Stefánsson","is_ca":false},{"name":"David A. van Heel","is_ca":false},{"name":"Robin Walters","is_ca":false},{"name":"Sebastian Zöllner","is_ca":false},{"name":"Alicia R. Martin","is_ca":false},{"name":"Cristen J. Willer","is_ca":false},{"name":"Mark J. Daly","is_ca":false},{"name":"Benjamin M. Neale","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03837515664813503,"gpt":0.308371599648952,"spread":0.269996443000817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.1758597,0.003471457,0.006121481,0.01623991,0.002034917,0.007264466,0.004659759,0.002183499,0.00577343],"category_scores_gemma":[0.2691689,0.002271445,0.01338812,0.01689297,0.001391641,0.003739864,0.01204408,0.003452063,0.0009375999],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001351176,"about_ca_system_score_gemma":0.008186214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006656513,"about_ca_topic_score_gemma":0.008630308,"domain_scores_codex":[0.8595233,0.1162245,0.006795764,0.01089531,0.005489128,0.001071987],"domain_scores_gemma":[0.7420058,0.1770791,0.0122289,0.05595947,0.008385588,0.004341123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.005465151,0.0002516106,0.2347607,0.01174781,0.3862448,0.0008154094,0.002117801,0.01466876,0.005706885,0.01989011,0.06184191,0.256489],"study_design_scores_gemma":[0.008736058,0.001476708,0.1424458,0.00525616,0.3723471,0.002232861,0.001221342,0.06829634,0.01044571,0.2156906,0.17096,0.000891367],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.06624881,0.04370619,0.7702898,0.01588379,0.002343404,0.003759602,0.07516728,0.01451269,0.008088441],"genre_scores_gemma":[0.3266654,0.005700532,0.6187979,0.003540039,0.001076516,0.008789029,0.03027759,0.003947414,0.001205622],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1758597,"threshold_uncertainty_score":0.9300464,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3213819329","doi":"10.1016/j.xgen.2021.100029","title":"GA4GH: International policies and standards for data sharing across genomic research and healthcare","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":294,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Indoc Research; Google (Canada); Vector Institute; University of Toronto; University Health Network; McGill University; Ontario Institute for Cancer Research; Canada's Michael Smith Genome Sciences Centre; University of Waterloo; Genome Canada; Ontario Genomics","funders":"Institute of Genetics; U.S. National Library of Medicine; National Cancer Institute; National Human Genome Research Institute; National Heart, Lung, and Blood Institute; Horizon 2020; Instituto de Salud Carlos III; Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Health and Medical Research Council; Research Institute, Nationwide Children's Hospital; Compute Canada; Innovative Medicines Initiative; Novo Nordisk Fonden; Terry Fox Research Institute; Bayer Fund; Eidgenössische Technische Hochschule Zürich; Academy of Finland; Government of Ontario; National Taiwan University; Institut National de la Santé et de la Recherche Médicale; Microsoft; National University of Singapore; Institute for Research in Biomedicine; Government of Canada; Additional Ventures; National Center for Advancing Translational Sciences; Seventh Framework Programme; Swiss Institute of Bioinformatics; Invitae; International Business Machines Corporation; Canada Research Chairs; Cotton Research and Development Corporation; Virginia Marine Resources Commission; Google; EOSC-Life; Chan Zuckerberg Initiative; Wellcome Trust; Robertson Foundation; Novo Nordisk; Genome Canada; European Molecular Biology Laboratory; Canarie; Broad Institute; State Government of Victoria; Center for Individualized Medicine, Mayo Clinic; Deutsche Forschungsgemeinschaft; Japan Agency for Medical Research and Development; Novartis; Agency for Science, Technology and Research; Amazon Web Services; Howard Hughes Medical Institute; National Institute on Handicapped Research; Foundation Medicine; Mayo Clinic; Vanderbilt University; Intel Corporation; Staatssekretariat für Bildung, Forschung und Innovation; “la Caixa” Foundation; National Institutes of Health; Vanderbilt-Ingram Cancer Center; National Institute of General Medical Sciences; Ontario Genomics Institute; Canada Foundation for Innovation; Nationwide Children's Hospital","keywords":"Interoperability; Data sharing; Suite; Data science; Health care; Genomics; Big data; Key (lock); Alliance; Knowledge management; Computer science; Business; Genome; World Wide Web; Political science; Medicine; Computer security; Biology; Data mining","authors":[{"name":"Heidi L. Rehm","is_ca":false},{"name":"Angela Page","is_ca":true},{"name":"Lindsay Smith","is_ca":true},{"name":"Jeremy Adams","is_ca":true},{"name":"Gil Alterovitz","is_ca":false},{"name":"Lawrence Babb","is_ca":false},{"name":"Maxmillian P. Barkley","is_ca":false},{"name":"Michael Baudis","is_ca":false},{"name":"Michael J. S. Beauvais","is_ca":true},{"name":"Tim Beck","is_ca":false},{"name":"J. Beckmann","is_ca":false},{"name":"Sergi Beltrán","is_ca":false},{"name":"David L. Bernick","is_ca":false},{"name":"Alexander Bernier","is_ca":true},{"name":"James Bonfield","is_ca":false},{"name":"Tiffany Boughtwood","is_ca":false},{"name":"Guillaume Bourque","is_ca":true},{"name":"Sarion R. Bowers","is_ca":false},{"name":"Anthony J. Brookes","is_ca":false},{"name":"Michael Brudno","is_ca":true},{"name":"Matthew Brush","is_ca":false},{"name":"David Bujold","is_ca":true},{"name":"Tony Burdett","is_ca":false},{"name":"Orion J. Buske","is_ca":false},{"name":"Moran N. Cabili","is_ca":false},{"name":"Daniel Cameron","is_ca":false},{"name":"Robert J. Carroll","is_ca":false},{"name":"Esmeralda Casas-Silva","is_ca":false},{"name":"Debyani Chakravarty","is_ca":false},{"name":"Bimal P. Chaudhari","is_ca":false},{"name":"Shu Hui Chen","is_ca":false},{"name":"J. Michael Cherry","is_ca":false},{"name":"Justina Chung","is_ca":true},{"name":"Melissa Cline","is_ca":false},{"name":"Hayley Clissold","is_ca":false},{"name":"Robert Cook‐Deegan","is_ca":false},{"name":"Mélanie Courtot","is_ca":false},{"name":"Fiona Cunningham","is_ca":false},{"name":"Miro Cupak","is_ca":false},{"name":"Robert M. Davies","is_ca":false},{"name":"Danielle Denisko","is_ca":true},{"name":"Megan Doerr","is_ca":false},{"name":"Lena Dolman","is_ca":true},{"name":"Edward S. Dove","is_ca":false},{"name":"Lewis Jonathan Dursi","is_ca":true},{"name":"Stephanie O. M. Dyke","is_ca":true},{"name":"James A. Eddy","is_ca":false},{"name":"Karen Eilbeck","is_ca":false},{"name":"Kyle Ellrott","is_ca":false},{"name":"Susan Fairley","is_ca":true},{"name":"Khalid A. Fakhro","is_ca":false},{"name":"Helen V. Firth","is_ca":false},{"name":"Michael Fitzsimons","is_ca":false},{"name":"Marc Fiume","is_ca":false},{"name":"Paul Flicek","is_ca":false},{"name":"Ian Fore","is_ca":false},{"name":"Mallory Freeberg","is_ca":false},{"name":"Robert R. Freimuth","is_ca":false},{"name":"Lauren A. Fromont","is_ca":false},{"name":"Jonathan Fuerth","is_ca":false},{"name":"Clara Gaff","is_ca":false},{"name":"Weiniu Gan","is_ca":false},{"name":"Elena M. Ghanaim","is_ca":false},{"name":"David Glazer","is_ca":false},{"name":"Robert C. Green","is_ca":false},{"name":"Malachi Griffith","is_ca":false},{"name":"Obi L. Griffith","is_ca":false},{"name":"Robert L. Grossman","is_ca":false},{"name":"Tudor Groza","is_ca":false},{"name":"Jaime M. Guidry Auvil","is_ca":false},{"name":"Roderic Guigó","is_ca":false},{"name":"Dipayan Gupta","is_ca":false},{"name":"Melissa Haendel","is_ca":false},{"name":"Ada Hamosh","is_ca":true},{"name":"David Hansen","is_ca":false},{"name":"Reece K. Hart","is_ca":false},{"name":"Dean M. Hartley","is_ca":false},{"name":"David Haussler","is_ca":false},{"name":"Rachele Hendricks‐Sturrup","is_ca":false},{"name":"Calvin Wai-Loon Ho","is_ca":false},{"name":"Ashley E. Hobb","is_ca":false},{"name":"Michael M. Hoffman","is_ca":true},{"name":"Oliver Hofmann","is_ca":true},{"name":"Petr Holub","is_ca":false},{"name":"Jacob Shujui Hsu","is_ca":false},{"name":"Jean‐Pierre Hubaux","is_ca":false},{"name":"Sarah Hunt","is_ca":false},{"name":"Ammar Husami","is_ca":false},{"name":"Julius O.B. Jacobsen","is_ca":false},{"name":"Saumya S. Jamuar","is_ca":false},{"name":"Elizabeth Janes","is_ca":true},{"name":"Francis Jeanson","is_ca":false},{"name":"Aina Jené","is_ca":false},{"name":"Amber L. Johns","is_ca":false},{"name":"Yann Joly","is_ca":true},{"name":"Steven J.M. Jones","is_ca":true},{"name":"Alexander Kanitz","is_ca":true},{"name":"Yoshihiro Kato","is_ca":false},{"name":"Thomas Keane","is_ca":false},{"name":"Kristina Kekesi-Lafrance","is_ca":true},{"name":"Jerome Kelleher","is_ca":false},{"name":"Giselle Kerry","is_ca":false},{"name":"Seik‐Soon Khor","is_ca":false},{"name":"Bartha Maria Knoppers","is_ca":true},{"name":"Melissa Konopko","is_ca":false},{"name":"Kenjiro Kosaki","is_ca":false},{"name":"Martin Kuba","is_ca":false},{"name":"Jonathan Lawson","is_ca":false},{"name":"Rasko Leinonen","is_ca":false},{"name":"Stephanie Li","is_ca":true},{"name":"Michael Lin","is_ca":true},{"name":"Mikael Lindén","is_ca":false},{"name":"Xianglin Liu","is_ca":true},{"name":"Isuru Liyanage","is_ca":false},{"name":"Javier Ferreiros","is_ca":false},{"name":"Anneke Lucassen","is_ca":false},{"name":"Michael Lukowski","is_ca":true},{"name":"Alice Mann","is_ca":true},{"name":"John Marshall","is_ca":false},{"name":"Michele Mattioni","is_ca":false},{"name":"Alejandro Metke‐Jimenez","is_ca":false},{"name":"Anna Middleton","is_ca":false},{"name":"Richard Milne","is_ca":false},{"name":"Fruzsina Molnár‐Gábor","is_ca":false},{"name":"Nicola Mulder","is_ca":false},{"name":"Mónica Muñoz-Torres","is_ca":false},{"name":"Rishi Nag","is_ca":false},{"name":"Hidewaki Nakagawa","is_ca":false},{"name":"Jamal Nasir","is_ca":false},{"name":"Arcadi Navarro","is_ca":false},{"name":"Tristan Nelson","is_ca":false},{"name":"Ania Niewielska","is_ca":false},{"name":"Amy Nisselle","is_ca":false},{"name":"Jeffrey Niu","is_ca":true},{"name":"Tommi Nyrönen","is_ca":false},{"name":"Brian D. O’Connor","is_ca":false},{"name":"Sabine Oesterle","is_ca":false},{"name":"Soichi Ogishima","is_ca":false},{"name":"Vivian Ota Wang","is_ca":false},{"name":"Laura A.D. Paglione","is_ca":false},{"name":"Emilio Palumbo","is_ca":false},{"name":"Helen Parkinson","is_ca":false},{"name":"Anthony Philippakis","is_ca":false},{"name":"Angel Pizarro","is_ca":false},{"name":"Andreas Prlić","is_ca":false},{"name":"Jordi Rambla","is_ca":false},{"name":"Augusto Rendon","is_ca":false},{"name":"Renee Rider","is_ca":false},{"name":"Peter N. Robinson","is_ca":false},{"name":"Kurt W. Rodarmer","is_ca":false},{"name":"Laura Lyman Rodriguez","is_ca":false},{"name":"Alan F. Rubin","is_ca":false},{"name":"Manuel Rueda","is_ca":false},{"name":"Gregory A. Rushton","is_ca":false},{"name":"Rosalyn Ryan","is_ca":false},{"name":"Gary Saunders","is_ca":false},{"name":"Helen Schuilenburg","is_ca":false},{"name":"Torsten Schwede","is_ca":false},{"name":"Serena Scollen","is_ca":false},{"name":"Alexander Senf","is_ca":true},{"name":"Nathan C. Sheffield","is_ca":false},{"name":"Neerjah Skantharajah","is_ca":true},{"name":"Albert V. Smith","is_ca":true},{"name":"Heidi J. Sofia","is_ca":false},{"name":"Dylan Spalding","is_ca":false},{"name":"Amanda B. Spurdle","is_ca":false},{"name":"Zornitza Stark","is_ca":false},{"name":"Lincoln Stein","is_ca":true},{"name":"Makoto Suematsu","is_ca":false},{"name":"Patrick Tan","is_ca":false},{"name":"Jonathan Tedds","is_ca":false},{"name":"Alastair Thomson","is_ca":false},{"name":"Adrian Thorogood","is_ca":true},{"name":"Timothy L. Tickle","is_ca":false},{"name":"Katsushi Tokunaga","is_ca":false},{"name":"Juha Törnroos","is_ca":false},{"name":"David Torrents","is_ca":false},{"name":"Sean Upchurch","is_ca":false},{"name":"Alfonso Valencia","is_ca":false},{"name":"Roman Valls Guimerà","is_ca":false},{"name":"Jessica Vamathevan","is_ca":false},{"name":"S.D. Varma","is_ca":false},{"name":"Danya F. Vears","is_ca":false},{"name":"Coby Viner","is_ca":true},{"name":"Craig Voisin","is_ca":true},{"name":"Alex H. Wagner","is_ca":false},{"name":"Susan Wallace","is_ca":false},{"name":"Brian Walsh","is_ca":false},{"name":"Marc S. Williams","is_ca":false},{"name":"Eva C. Winkler","is_ca":true},{"name":"B Wold","is_ca":false},{"name":"Grant M. Wood","is_ca":false},{"name":"Jessica Woolley","is_ca":false},{"name":"Chisato Yamasaki","is_ca":false},{"name":"Andrew Yates","is_ca":false},{"name":"Christina K. Yung","is_ca":true},{"name":"Lyndon Zass","is_ca":false},{"name":"Ksenia Zaytseva","is_ca":true},{"name":"Junjun Zhang","is_ca":true},{"name":"Peter Goodhand","is_ca":true},{"name":"Kathryn N. North","is_ca":true},{"name":"Ewan Birney","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1002161335346962,"gpt":0.4196946650027868,"spread":0.3194785314680906,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["scholarly_communication","open_science"],"consensus_categories":[],"category_scores_codex":[0.178108,0.002025989,0.001813525,0.009343802,0.004983949,0.02205722,0.01156948,0.01452143,0.008097617],"category_scores_gemma":[0.2250262,0.002279663,0.003409054,0.01509548,0.01042698,0.02150076,0.02160183,0.01516207,0.01057154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0100017,"about_ca_system_score_gemma":0.0508234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01567365,"about_ca_topic_score_gemma":0.00580287,"domain_scores_codex":[0.8833976,0.05617967,0.01907481,0.008335325,0.02697893,0.006033637],"domain_scores_gemma":[0.6885071,0.1108461,0.01702539,0.1101932,0.05972339,0.01370483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002308945,0.0001907962,0.003429306,0.0008531196,0.0001453852,0.0003594813,0.002989705,0.005332855,0.003027544,0.7305298,0.1361755,0.1167355],"study_design_scores_gemma":[0.00009260563,0.0001182869,0.002527448,0.002548966,0.00009000306,0.0004276232,0.001384594,0.007108733,0.003773083,0.2240168,0.757696,0.0002159277],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.00508908,0.002729433,0.8472053,0.05271552,0.003168888,0.002630302,0.004853539,0.01280686,0.06880117],"genre_scores_gemma":[0.05221068,0.004241734,0.8651913,0.02359194,0.001535547,0.006607811,0.0229152,0.005244083,0.01846166],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9884305,"threshold_uncertainty_score":0.9419362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4226151130","doi":"10.1016/j.xgen.2022.100128","title":"Benchmarking challenging small variants with linked and long reads","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute; University of British Columbia","funders":"National Institute of Standards and Technology; National Institutes of Health; German Network for Bioinformatics Infrastructure; National Human Genome Research Institute; Bundesministerium für Bildung und Forschung; U.S. National Library of Medicine; Deutsche Forschungsgemeinschaft","keywords":"Benchmarking; Indel; False positive paradox; Computational biology; Computer science; Benchmark (surveying); False positives and false negatives; Genome; Biology; Data mining; Genetics; Artificial intelligence; Gene","authors":[{"name":"Justin Wagner","is_ca":false},{"name":"Nathan D. Olson","is_ca":false},{"name":"Lindsay Harris","is_ca":false},{"name":"Ziad Khan","is_ca":false},{"name":"Jesse Farek","is_ca":false},{"name":"Medhat Mahmoud","is_ca":false},{"name":"Ana Stanković","is_ca":false},{"name":"Vladimir Kovačević","is_ca":false},{"name":"Byunggil Yoo","is_ca":false},{"name":"Neil Miller","is_ca":false},{"name":"Jeffrey Rosenfeld","is_ca":false},{"name":"Bohan Ni","is_ca":false},{"name":"Samantha Zarate","is_ca":false},{"name":"Melanie Kirsche","is_ca":false},{"name":"Sergey Aganezov","is_ca":false},{"name":"Michael C. Schatz","is_ca":false},{"name":"Giuseppe Narzisi","is_ca":false},{"name":"Marta Byrska-Bishop","is_ca":false},{"name":"Wayne E. Clarke","is_ca":false},{"name":"Uday S. Evani","is_ca":false},{"name":"Charles Markello","is_ca":false},{"name":"Kishwar Shafin","is_ca":false},{"name":"Xin Zhou","is_ca":false},{"name":"Arend Sidow","is_ca":false},{"name":"Vikas Bansal","is_ca":false},{"name":"Peter Ebert","is_ca":false},{"name":"Tobias Marschall","is_ca":false},{"name":"Peter M. Lansdorp","is_ca":false},{"name":"Vincent C. T. Hanlon","is_ca":true},{"name":"Carl-Adam Mattsson","is_ca":true},{"name":"Álvaro Martínez Barrio","is_ca":false},{"name":"Ian T. Fiddes","is_ca":false},{"name":"Chunlin Xiao","is_ca":false},{"name":"Arkarachai Fungtammasan","is_ca":false},{"name":"Chen-Shan Chin","is_ca":false},{"name":"Aaron M. Wenger","is_ca":false},{"name":"William J. Rowell","is_ca":false},{"name":"Fritz J. Sedlazeck","is_ca":false},{"name":"Andrew Carroll","is_ca":false},{"name":"Marc Salit","is_ca":false},{"name":"Justin M. Zook","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007597151974323766,"gpt":0.1813223733136201,"spread":0.1737252213392963,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0129663,0.002614205,0.001331425,0.003010027,0.001868731,0.00349524,0.002361479,0.002695599,0.003360159],"category_scores_gemma":[0.04262209,0.0007651774,0.001890525,0.003085733,0.001423289,0.001710451,0.003312462,0.00213991,0.002664795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001501477,"about_ca_system_score_gemma":0.002233988,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00904633,"about_ca_topic_score_gemma":0.01591587,"domain_scores_codex":[0.982238,0.005401759,0.00142544,0.005280126,0.004905668,0.0007489251],"domain_scores_gemma":[0.9779894,0.01222927,0.0009773255,0.004243249,0.003769621,0.0007911305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004595905,0.0009816736,0.1800513,0.004151191,0.004370851,0.002607603,0.002134264,0.2449728,0.1796117,0.02247917,0.08991261,0.2641309],"study_design_scores_gemma":[0.0004841998,0.001455967,0.07324292,0.0004467878,0.0007967224,0.003014727,0.0009517858,0.505786,0.2655537,0.03192096,0.1157264,0.0006198174],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5334673,0.005281107,0.3554902,0.001453993,0.001285178,0.0009805972,0.03786503,0.04784852,0.016328],"genre_scores_gemma":[0.5368395,0.0006862218,0.3200414,0.001927221,0.0002107043,0.0009543679,0.1259001,0.008677785,0.004762588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0129663,"threshold_uncertainty_score":0.06857312,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4283210431","doi":"10.1016/j.xgen.2022.100129","title":"PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":204,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute","keywords":"Benchmarking; Nanopore sequencing; Computer science; Benchmark (surveying); Computational biology; Identification (biology); Genome; DNA sequencing; Data science; Artificial intelligence; Biology; Genetics; Gene; Geography; Cartography","authors":[{"name":"Nathan D. Olson","is_ca":false},{"name":"Justin Wagner","is_ca":false},{"name":"Jennifer McDaniel","is_ca":false},{"name":"Sarah H. Stephens","is_ca":false},{"name":"Samuel T. Westreich","is_ca":false},{"name":"Anish G. Prasanna","is_ca":false},{"name":"Elaine Johanson","is_ca":false},{"name":"Emily S. Boja","is_ca":false},{"name":"Ezekiel J. Maier","is_ca":false},{"name":"Omar Serang","is_ca":false},{"name":"David Jáspez","is_ca":false},{"name":"José M. Lorenzo-Salazar","is_ca":false},{"name":"Adrián Muñoz‐Barrera","is_ca":false},{"name":"Luis A. Rubio‐Rodríguez","is_ca":false},{"name":"Carlos Flores","is_ca":false},{"name":"Konstantinos Kyriakidis","is_ca":false},{"name":"Andigoni Malousi","is_ca":false},{"name":"Kishwar Shafin","is_ca":false},{"name":"Trevor Pesout","is_ca":false},{"name":"Miten Jain","is_ca":false},{"name":"Benedict Paten","is_ca":false},{"name":"Pi-Chuan Chang","is_ca":false},{"name":"Alexey Kolesnikov","is_ca":false},{"name":"Maria Nattestad","is_ca":false},{"name":"Gunjan Baid","is_ca":false},{"name":"Sidharth Goel","is_ca":false},{"name":"Howard H. Yang","is_ca":false},{"name":"Andrew Carroll","is_ca":false},{"name":"Robert Eveleigh","is_ca":true},{"name":"Mathieu Bourgey","is_ca":true},{"name":"Guillaume Bourque","is_ca":true},{"name":"Gen Li","is_ca":false},{"name":"Chouxian Ma","is_ca":false},{"name":"LinQi Tang","is_ca":false},{"name":"Yuanping Du","is_ca":false},{"name":"Shaowei Zhang","is_ca":false},{"name":"Jordi Morata","is_ca":false},{"name":"Raúl Tonda","is_ca":false},{"name":"Genı́s Parra","is_ca":false},{"name":"Jean-Rémi Trotta","is_ca":false},{"name":"Christian Brueffer","is_ca":false},{"name":"Sinem Demirkaya-Budak","is_ca":false},{"name":"Duygu Kabakci-Zorlu","is_ca":false},{"name":"Deniz Turgut","is_ca":false},{"name":"Özem Kalay","is_ca":false},{"name":"Güngör Budak","is_ca":false},{"name":"Kübra Narcı","is_ca":false},{"name":"Elif Acar Arslan","is_ca":false},{"name":"Ivan J. Johnson","is_ca":false},{"name":"Alexey Dolgoborodov","is_ca":false},{"name":"Vladimir Semenyuk","is_ca":false},{"name":"Amit Jain","is_ca":false},{"name":"H. Serhat Tetikol","is_ca":false},{"name":"Varun Jain","is_ca":false},{"name":"Mike Ruehle","is_ca":false},{"name":"Bryan R. Lajoie","is_ca":false},{"name":"Cooper Roddey","is_ca":false},{"name":"Severine Catreux","is_ca":false},{"name":"Rami Mehio","is_ca":false},{"name":"Mian Umair Ahsan","is_ca":false},{"name":"Qian Liu","is_ca":false},{"name":"Kai Wang","is_ca":false},{"name":"Sayed Mohammad Ebrahim Sahraeian","is_ca":false},{"name":"Li Tai Fang","is_ca":false},{"name":"Marghoob Mohiyuddin","is_ca":false},{"name":"Calvin Hung","is_ca":false},{"name":"Chirag Jain","is_ca":false},{"name":"Hanying Feng","is_ca":false},{"name":"Zhipan Li","is_ca":false},{"name":"Luoqi Chen","is_ca":false},{"name":"Fritz J. Sedlazeck","is_ca":false},{"name":"Justin M. Zook","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01232994171129741,"gpt":0.2208601175525669,"spread":0.2085301758412695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04392611,0.004818202,0.003555084,0.003816239,0.004439214,0.00819312,0.007418159,0.00834535,0.01333474],"category_scores_gemma":[0.1111488,0.002122135,0.004248051,0.004085504,0.002571601,0.003494987,0.01172574,0.006327573,0.01118142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002203032,"about_ca_system_score_gemma":0.007195061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01038345,"about_ca_topic_score_gemma":0.0180131,"domain_scores_codex":[0.9690579,0.01012464,0.002478016,0.009046336,0.007029743,0.002263282],"domain_scores_gemma":[0.937333,0.0322512,0.001952125,0.01163341,0.01353738,0.003292906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006350208,0.0009244967,0.03936294,0.008293361,0.003189573,0.001727858,0.004017158,0.03601727,0.05400783,0.0105581,0.6048459,0.2307052],"study_design_scores_gemma":[0.00321033,0.002717403,0.04104403,0.002119289,0.001370744,0.005338766,0.00194403,0.1187572,0.1091423,0.03816588,0.6745455,0.001644598],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2314503,0.01803118,0.3221514,0.008631055,0.01269883,0.006071588,0.262985,0.1039332,0.0340475],"genre_scores_gemma":[0.1837672,0.001695012,0.2941593,0.006087558,0.001195761,0.004814812,0.4617015,0.03112814,0.01545074],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.04392611,"threshold_uncertainty_score":0.2323062,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200565305","doi":"10.1016/j.xgen.2021.100065","title":"Genome-wide spatial expression profiling in formalin-fixed tissues","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Toronto","funders":"Stiftelsen för Strategisk Forskning; Vetenskapsrådet; Horizon 2020 Framework Programme; Knut och Alice Wallenbergs Stiftelse; Science for Life Laboratory; Cancerfonden","keywords":"Computational biology; Biology; Transcriptome; Gene expression profiling; Genome; Pathology; Gene expression; Gene; Genetics; Medicine","authors":[{"name":"Eva Gracia Villacampa","is_ca":false},{"name":"Ludvig Larsson","is_ca":false},{"name":"Reza Mirzazadeh","is_ca":false},{"name":"Linda Kvastad","is_ca":false},{"name":"Alma Andersson","is_ca":false},{"name":"Annelie Mollbrink","is_ca":false},{"name":"Georgia Kokaraki","is_ca":false},{"name":"Vanessa Monteil","is_ca":false},{"name":"Niklas Schultz","is_ca":false},{"name":"K. Sofia Appelberg","is_ca":false},{"name":"Núria Montserrat","is_ca":false},{"name":"Haibo Zhang","is_ca":true},{"name":"Josef Penninger","is_ca":true},{"name":"Wolfgang Miesbach","is_ca":false},{"name":"Alì Mirazimi","is_ca":false},{"name":"Joseph W. Carlson","is_ca":false},{"name":"Joakim Lundeberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01148773715404703,"gpt":0.2169774639878073,"spread":0.2054897268337603,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002752285,0.0002075045,0.000200142,0.0007468751,0.0002722634,0.0003259199,0.0001732764,0.0002414937,0.0006934174],"category_scores_gemma":[0.0002072658,0.0001398529,0.0002405298,0.0006621946,0.0001894641,0.0001226431,0.0001646305,0.0003360871,0.0003677473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001798545,"about_ca_system_score_gemma":0.000216428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009730597,"about_ca_topic_score_gemma":0.003491196,"domain_scores_codex":[0.9997794,0.00002882408,0.00001188259,0.00008711618,0.00006083348,0.00003199255],"domain_scores_gemma":[0.9998722,0.00003581989,0.00003016838,0.00002017039,0.00003262403,0.000008948125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002513905,0.000004855237,0.0005342445,0.00002470242,0.000007475356,0.0000176407,0.00001522166,0.0001107003,0.9973533,0.00004519801,0.00004654988,0.001815065],"study_design_scores_gemma":[0.000010541,0.0001954549,0.07044789,0.0000116027,0.00006308799,0.0004462081,0.0001364608,0.00266915,0.9174246,0.0002428721,0.008337983,0.00001426775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8216965,0.004113219,0.1573383,0.0002120209,0.00007611024,0.0002645925,0.01116626,0.0009355922,0.004197533],"genre_scores_gemma":[0.8180354,0.003855655,0.1539395,0.0003271439,0.00004275243,0.0007415891,0.01645556,0.0002655849,0.006336851],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009730597,"threshold_uncertainty_score":0.002319694,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313492671","doi":"10.1016/j.xgen.2022.100241","title":"Global Biobank analyses provide lessons for developing polygenic risk scores across diverse cohorts","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Moonshot Research and Development Program; National Institute of General Medical Sciences; National Institute of Mental Health; National Heart, Lung, and Blood Institute; National Institute on Aging; Faculty of Medicine and Health, University of Sydney; St. Olavs Hospital Universitetssykehuset i Trondheim; Japan Society for the Promotion of Science; Medical Research Council; National Institutes of Health; Eesti Teadusagentuur; Fakultet for medisin og helsevitenskap, Norges Teknisk-Naturvitenskapelige Universitet; Japan Agency for Medical Research and Development; European Commission; National Human Genome Research Institute; Wellcome Trust; Stiftelsen Kristian Gerhard Jebsen; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Biobank; Heritability; Precision medicine; Genome-wide association study; Linkage disequilibrium; Genetic association; Medicine; Bioinformatics; Biology; Genetics; Single-nucleotide polymorphism","authors":[{"name":"Ying Wang","is_ca":false},{"name":"Shinichi Namba","is_ca":false},{"name":"Esteban A. Lopera-Maya","is_ca":false},{"name":"Sini Kerminen","is_ca":false},{"name":"Kristin Tsuo","is_ca":false},{"name":"Kristi Läll","is_ca":false},{"name":"Masahiro Kanai","is_ca":false},{"name":"Wei Zhou","is_ca":false},{"name":"Kuan-Han Wu","is_ca":false},{"name":"Marie-Julie Favé","is_ca":true},{"name":"Laxmi Bhatta","is_ca":false},{"name":"Philip Awadalla","is_ca":true},{"name":"Ben Brumpton","is_ca":false},{"name":"Patrick Deelen","is_ca":false},{"name":"Kristian Hveem","is_ca":false},{"name":"Valeria Lo Faro","is_ca":false},{"name":"Reedik Mägi","is_ca":false},{"name":"Yoshinori Murakami","is_ca":false},{"name":"Serena Sanna","is_ca":false},{"name":"Jordan W. Smoller","is_ca":false},{"name":"Jasmina Uzunović","is_ca":true},{"name":"Brooke N. Wolford","is_ca":false},{"name":"Humaira Rasheed","is_ca":false},{"name":"Jibril Hirbo","is_ca":false},{"name":"Arjun Bhattacharya","is_ca":false},{"name":"Huiling Zhao","is_ca":false},{"name":"Ida Surakka","is_ca":false},{"name":"Sinéad B. Chapman","is_ca":false},{"name":"Juha Karjalainen","is_ca":false},{"name":"Mitja Kurki","is_ca":false},{"name":"Mutaamba Maasha","is_ca":false},{"name":"Juulia Partanen","is_ca":false},{"name":"Sameer Chavan","is_ca":true},{"name":"Tzu‐Ting Chen","is_ca":false},{"name":"Michelle Daya","is_ca":false},{"name":"Yi Ding","is_ca":false},{"name":"Yen‐Chen Anne Feng","is_ca":false},{"name":"Christopher R. Gignoux","is_ca":false},{"name":"Sarah E. Graham","is_ca":false},{"name":"Whitney Hornsby","is_ca":false},{"name":"Nathan Ingold","is_ca":false},{"name":"Ruth Johnson","is_ca":false},{"name":"Triin Laisk","is_ca":false},{"name":"Kuang Lin","is_ca":false},{"name":"Jun Lv","is_ca":false},{"name":"Iona Y. Millwood","is_ca":false},{"name":"Priit Palta","is_ca":false},{"name":"Anita Pandit","is_ca":false},{"name":"Michael Preuß","is_ca":false},{"name":"Unnur Þorsteinsdóttir","is_ca":false},{"name":"Matthew Zawistowski","is_ca":false},{"name":"Xue Zhong","is_ca":false},{"name":"Archie Campbell","is_ca":false},{"name":"Kristy Crooks","is_ca":false},{"name":"Geertruida H. de Bock","is_ca":false},{"name":"Nicholas J. Douville","is_ca":false},{"name":"Sarah Finer","is_ca":true},{"name":"Lars G. Fritsche","is_ca":false},{"name":"Chris Griffiths","is_ca":false},{"name":"Yu Guo","is_ca":false},{"name":"Karen A. Hunt","is_ca":false},{"name":"Takahiro Konuma","is_ca":false},{"name":"Riccardo E. Marioni","is_ca":false},{"name":"Jansonius Nomdo","is_ca":false},{"name":"Snehal Patil","is_ca":false},{"name":"Nicholas Rafaels","is_ca":false},{"name":"Anne Richmond","is_ca":false},{"name":"Jonathan Shortt","is_ca":false},{"name":"Péter Straub","is_ca":false},{"name":"Ran Tao","is_ca":false},{"name":"Brett Vanderwerff","is_ca":false},{"name":"Kathleen C. Barnes","is_ca":false},{"name":"Marike Boezen","is_ca":false},{"name":"Zhengming Chen","is_ca":false},{"name":"Chia‐Yen Chen","is_ca":false},{"name":"Judy H. Cho","is_ca":false},{"name":"George Davey Smith","is_ca":false},{"name":"Hilary K. Finucane","is_ca":false},{"name":"Lude Franke","is_ca":false},{"name":"Eric R. Gamazon","is_ca":false},{"name":"Andrea Ganna","is_ca":false},{"name":"Tom R. Gaunt","is_ca":false},{"name":"Tian Ge","is_ca":false},{"name":"Hailiang Huang","is_ca":false},{"name":"Jennifer E. Huffman","is_ca":false},{"name":"Jukka Koskela","is_ca":false},{"name":"Clara Lajonchere","is_ca":false},{"name":"Matthew H. Law","is_ca":false},{"name":"Liming Li","is_ca":false},{"name":"Cecilia M. Lindgren","is_ca":false},{"name":"Ruth J. F. Loos","is_ca":false},{"name":"Stuart MacGregor","is_ca":false},{"name":"Koichi Matsuda","is_ca":false},{"name":"Catherine M. Olsen","is_ca":false},{"name":"David J. Porteous","is_ca":false},{"name":"Jordan A. Shavit","is_ca":true},{"name":"Harold Snieder","is_ca":false},{"name":"Richard C. Trembath","is_ca":false},{"name":"Judith M. Vonk","is_ca":false},{"name":"David C. Whiteman","is_ca":false},{"name":"Stephen J. Wicks","is_ca":false},{"name":"Cisca Wijmenga","is_ca":false},{"name":"John Wright","is_ca":false},{"name":"Jie Zheng","is_ca":false},{"name":"Xiang Zhou","is_ca":false},{"name":"Michael Boehnke","is_ca":false},{"name":"Nancy J. Cox","is_ca":false},{"name":"Daniel H. Geschwind","is_ca":false},{"name":"Caroline Hayward","is_ca":false},{"name":"Eimear E. Kenny","is_ca":false},{"name":"Kuang Lin","is_ca":true},{"name":"Hilary C. Martin","is_ca":false},{"name":"Sarah E. Medland","is_ca":false},{"name":"Aarno Palotie","is_ca":false},{"name":"Bogdan Paşaniuc","is_ca":false},{"name":"Kāri Stefánsson","is_ca":false},{"name":"David A. van Heel","is_ca":false},{"name":"Robin Walters","is_ca":false},{"name":"Sebastian Zöllner","is_ca":false},{"name":"Alicia R. Martin","is_ca":false},{"name":"Cristen J. Willer","is_ca":false},{"name":"Mark J. Daly","is_ca":false},{"name":"Benjamin M. Neale","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05915114020890409,"gpt":0.366940908295321,"spread":0.3077897680864169,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0992032,0.002275,0.002634736,0.008728894,0.001333628,0.007992073,0.002489823,0.001298654,0.005770392],"category_scores_gemma":[0.1976913,0.001336534,0.003229169,0.00861157,0.001929858,0.005392874,0.007267245,0.004160171,0.001974262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001177398,"about_ca_system_score_gemma":0.002807019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006804524,"about_ca_topic_score_gemma":0.009393504,"domain_scores_codex":[0.9642094,0.02557383,0.003165758,0.004564512,0.002028191,0.0004583519],"domain_scores_gemma":[0.8854437,0.05950014,0.009587212,0.03534881,0.008513869,0.001606251],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008020147,0.0001691082,0.4784396,0.001634303,0.01740469,0.0005468598,0.005746697,0.01727535,0.003308338,0.04926526,0.06027065,0.3651372],"study_design_scores_gemma":[0.0005075114,0.000510267,0.3290915,0.003199382,0.0062191,0.0007714687,0.003510099,0.04178928,0.004250064,0.5047082,0.10496,0.0004831463],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.114549,0.007671746,0.8128176,0.01822587,0.0009873636,0.0008135801,0.02805741,0.004673948,0.01220352],"genre_scores_gemma":[0.4268583,0.003049494,0.5419385,0.005360652,0.0006660044,0.001097187,0.01731918,0.002389131,0.001321477],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9007968,"threshold_uncertainty_score":0.5246429,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4304777503","doi":"10.1016/j.xgen.2022.100195","title":"Proteome-wide Mendelian randomization in global biobank meta-analysis reveals multi-ancestry drug targets for common diseases","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Faculté de médecine et des sciences de la santé, Université de Sherbrooke; Faculty of Medicine and Health, University of Sydney; Fakultet for medisin og helsevitenskap, Norges Teknisk-Naturvitenskapelige Universitet; University of Bristol; Diabetes UK; Department of Health and Social Care; Elizabeth Blackwell Institute for Health Research, University of Bristol; British Heart Foundation; QIMR Berghofer Medical Research Institute; Alan Turing Institute; St. Olavs Hospital Universitetssykehuset i Trondheim; Academy of Medical Sciences; Taiwan Biobank; Cancer Research UK; Department for Business, Energy and Industrial Strategy, UK Government; Wellcome Trust; American Medical Systems; Norges Teknisk-Naturvitenskapelige Universitet; Stiftelsen Kristian Gerhard Jebsen; National Institute for Health and Care Research; Biomet; Medical Research Council; Biogen","keywords":"Mendelian randomization; Biobank; Proteome; Computational biology; Biology; Generalizability theory; Genetics; Drug target; Population; Drug; Meta-analysis; Bioinformatics; Medicine; Pharmacology; Genetic variants; Gene; Psychology; Internal medicine","authors":[{"name":"Huiling Zhao","is_ca":false},{"name":"Humaria Rasheed","is_ca":false},{"name":"Therese Haugdahl Nøst","is_ca":false},{"name":"Yoonsu Cho","is_ca":false},{"name":"Yi Liu","is_ca":false},{"name":"Laxmi Bhatta","is_ca":false},{"name":"Arjun Bhattacharya","is_ca":false},{"name":"Gibran Hemani","is_ca":false},{"name":"George Davey Smith","is_ca":false},{"name":"Ben Brumpton","is_ca":false},{"name":"Wei Zhou","is_ca":false},{"name":"Benjamin M. Neale","is_ca":false},{"name":"Tom R. Gaunt","is_ca":false},{"name":"Jie Zheng","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0332748780504095,"gpt":0.2931223699700536,"spread":0.2598474919196441,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0361446,0.001655828,0.003231827,0.003231272,0.0008284872,0.002456865,0.00116745,0.001126781,0.003159952],"category_scores_gemma":[0.03775669,0.0006195271,0.009510512,0.004437258,0.0008722703,0.00122884,0.002140686,0.00167858,0.0002101202],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004977882,"about_ca_system_score_gemma":0.0008773583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002835749,"about_ca_topic_score_gemma":0.002830987,"domain_scores_codex":[0.9699081,0.02231267,0.001316867,0.004914381,0.0008767153,0.0006713236],"domain_scores_gemma":[0.9652671,0.02614176,0.002549958,0.005107248,0.0004544263,0.0004796102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.007586391,0.00008051355,0.6082116,0.001533551,0.32195,0.001089894,0.0002833045,0.01324527,0.004342159,0.003778024,0.002569194,0.03533009],"study_design_scores_gemma":[0.002090464,0.001332522,0.5494766,0.000566599,0.32108,0.001961483,0.0006072752,0.07659893,0.004263131,0.0325712,0.009228593,0.0002231202],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8480134,0.03279981,0.1063001,0.002639426,0.0004554305,0.0002044081,0.005776851,0.001022312,0.002788338],"genre_scores_gemma":[0.9911417,0.0008034699,0.006770733,0.0002623701,0.00006285879,0.00006016108,0.0007237197,0.00007107919,0.0001037994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0361446,"threshold_uncertainty_score":0.1911532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3214176644","doi":"10.1016/j.xgen.2021.100028","title":"The Data Use Ontology to streamline responsible access to human biomedical datasets","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Google (Canada); Montreal Neurological Institute and Hospital; University Health Network; McGill University; Canada's Michael Smith Genome Sciences Centre; McGill Genome Centre","funders":"National Health and Medical Research Council; Horizon 2020 Framework Programme; National Institutes of Health; ZonMw; FP7 Coherent Development of Research Policies; University of Michigan; Government of the United Kingdom; European Bioinformatics Institute; McGill University; Horizon 2020; EOSC-Life; Bayer; Japan Agency for Medical Research and Development; Novartis; European Commission; Broad Institute; International Business Machines Corporation; National Human Genome Research Institute; Wellcome Trust; Intel Corporation","keywords":"Computer science; Ontology; Data science; Data access; Data sharing; Data management; Data discovery; Metadata; Information retrieval; World Wide Web; Data mining; Database","authors":[{"name":"Jonathan Lawson","is_ca":false},{"name":"Moran N. Cabili","is_ca":false},{"name":"Giselle Kerry","is_ca":false},{"name":"Tiffany Boughtwood","is_ca":false},{"name":"Adrian Thorogood","is_ca":true},{"name":"Pinar Alper","is_ca":false},{"name":"Sarion R. Bowers","is_ca":false},{"name":"Rebecca Boyles","is_ca":false},{"name":"Anthony J. Brookes","is_ca":false},{"name":"Matthew Brush","is_ca":false},{"name":"Tony Burdett","is_ca":false},{"name":"Hayley Clissold","is_ca":false},{"name":"Stacey Donnelly","is_ca":false},{"name":"Stephanie O. M. Dyke","is_ca":true},{"name":"Mallory Freeberg","is_ca":false},{"name":"Melissa Haendel","is_ca":false},{"name":"Chihiro Hata","is_ca":false},{"name":"Petr Holub","is_ca":false},{"name":"Francis Jeanson","is_ca":true},{"name":"Aina Jené","is_ca":false},{"name":"Minae Kawashima","is_ca":false},{"name":"Shuichi Kawashima","is_ca":false},{"name":"Melissa Konopko","is_ca":false},{"name":"Irene Kyomugisha","is_ca":false},{"name":"Haoyuan Li","is_ca":true},{"name":"Mikael Lindén","is_ca":false},{"name":"Laura Lyman Rodriguez","is_ca":false},{"name":"Mizuki Morita","is_ca":false},{"name":"Nicola Mulder","is_ca":false},{"name":"Jean Muller","is_ca":false},{"name":"Satoshi Nagaie","is_ca":false},{"name":"Jamal Nasir","is_ca":false},{"name":"Soichi Ogishima","is_ca":false},{"name":"Vivian Ota Wang","is_ca":false},{"name":"Laura Paglione","is_ca":false},{"name":"Ravi Pandya","is_ca":false},{"name":"Helen Parkinson","is_ca":false},{"name":"Anthony Philippakis","is_ca":false},{"name":"Fabian Praßer","is_ca":false},{"name":"Jordi Rambla","is_ca":false},{"name":"Kathy Reinold","is_ca":false},{"name":"Gregory A. Rushton","is_ca":false},{"name":"Andrea Saltzman","is_ca":false},{"name":"Gary Saunders","is_ca":false},{"name":"Heidi J. Sofia","is_ca":false},{"name":"Dylan Spalding","is_ca":false},{"name":"Morris A. Swertz","is_ca":false},{"name":"Ilia Tulchinsky","is_ca":true},{"name":"Esther J. van Enckevort","is_ca":false},{"name":"S.D. Varma","is_ca":false},{"name":"Craig Voisin","is_ca":true},{"name":"Natsuko Yamamoto","is_ca":false},{"name":"Chisato Yamasaki","is_ca":false},{"name":"Lyndon Zass","is_ca":false},{"name":"Jaime M. Guidry Auvil","is_ca":false},{"name":"Tommi Nyrönen","is_ca":false},{"name":"Mélanie Courtot","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08713909626843905,"gpt":0.3653044782949046,"spread":0.2781653820264656,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.0324927,0.0008502031,0.001064491,0.006528228,0.002847694,0.007838904,0.003085661,0.002695731,0.005356018],"category_scores_gemma":[0.04189427,0.001194821,0.002467891,0.007990186,0.00365215,0.01705081,0.01026302,0.005186076,0.005627706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004747475,"about_ca_system_score_gemma":0.02281114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02011343,"about_ca_topic_score_gemma":0.0164376,"domain_scores_codex":[0.9806225,0.005221073,0.00485012,0.002407693,0.005917811,0.0009807098],"domain_scores_gemma":[0.9604248,0.01131549,0.002618528,0.01638601,0.007393816,0.001861249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002178011,0.0002442944,0.006863076,0.001402074,0.0001535917,0.0005326226,0.004171466,0.003109714,0.009442001,0.6650336,0.1644682,0.1443616],"study_design_scores_gemma":[0.000032546,0.00003038114,0.002306902,0.0006513876,0.00005656555,0.0003023441,0.0006537235,0.004965511,0.005024363,0.07676307,0.90913,0.00008325111],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.005642877,0.0005740579,0.8924962,0.009876907,0.0007911886,0.002075998,0.03530548,0.01436081,0.03887636],"genre_scores_gemma":[0.03410628,0.001376078,0.8616058,0.005050913,0.0003641104,0.002462005,0.07849028,0.004242786,0.01230172],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9969143,"threshold_uncertainty_score":0.1718398,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3213738135","doi":"10.1016/j.xgen.2021.100032","title":"International federation of genomic medicine databases using GA4GH standards","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics; Ontario Institute for Cancer Research; University of Toronto; University Health Network; McGill University; McGill Genome Centre","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute; National Human Genome Research Institute; Wellcome Trust; HORIZON EUROPE Framework Programme; Canadian Institute for Advanced Research; Academy of Finland; Horizon 2020 Framework Programme; National Institutes of Health; Canadian Institutes of Health Research; Swiss Institute of Bioinformatics; Genome Canada; Medical Research Council","keywords":"Mandate; Data sharing; Genomic medicine; Shared resource; Intellectual property; Resource (disambiguation); Precision medicine; Data science; Database; Computer science; World Wide Web; Knowledge management; Business; Political science; Medicine; Computer security; Computational biology","authors":[{"name":"Adrian Thorogood","is_ca":true},{"name":"Heidi L. Rehm","is_ca":false},{"name":"Peter Goodhand","is_ca":true},{"name":"Angela Page","is_ca":true},{"name":"Yann Joly","is_ca":true},{"name":"Michael Baudis","is_ca":false},{"name":"Jordi Rambla","is_ca":false},{"name":"Arcadi Navarro","is_ca":false},{"name":"Tommi Nyrönen","is_ca":false},{"name":"Mikael Lindén","is_ca":false},{"name":"Edward S. Dove","is_ca":false},{"name":"Marc Fiume","is_ca":false},{"name":"Michael Brudno","is_ca":true},{"name":"Melissa Cline","is_ca":false},{"name":"Ewan Birney","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02126502526986253,"gpt":0.2911566321683272,"spread":0.2698916068984647,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03252781,0.0009634165,0.001139504,0.008162508,0.002309602,0.01186227,0.00582516,0.003704492,0.02349266],"category_scores_gemma":[0.07213342,0.00101414,0.001670049,0.01038473,0.002010999,0.008033716,0.01110998,0.004521531,0.02593205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003457652,"about_ca_system_score_gemma":0.01239451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01053821,"about_ca_topic_score_gemma":0.006837506,"domain_scores_codex":[0.9785906,0.007918517,0.004701229,0.002188761,0.005273117,0.001327632],"domain_scores_gemma":[0.9287403,0.01268926,0.00338524,0.03609134,0.01650883,0.002585093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003609932,0.0001309482,0.004045096,0.0006152378,0.0001385622,0.0004261955,0.0008516654,0.00514012,0.003312816,0.2265708,0.4502587,0.3081489],"study_design_scores_gemma":[0.00006062241,0.00004367909,0.001799434,0.0004372486,0.00003582195,0.0005016908,0.0002375812,0.01132391,0.003672852,0.08252487,0.899261,0.0001013205],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.003042836,0.00113242,0.8260961,0.0169279,0.001783802,0.00171674,0.02447922,0.04894992,0.075871],"genre_scores_gemma":[0.03244427,0.001132443,0.862974,0.005367628,0.0005496448,0.002032255,0.07287118,0.004034909,0.01859365],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03252781,"threshold_uncertainty_score":0.1720256,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3212791962","doi":"10.1016/j.xgen.2021.100027","title":"The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics","funders":"U.S. National Library of Medicine; National Cancer Institute; National Institutes of Health; Invitae; European Molecular Biology Laboratory; European Bioinformatics Institute; Wellcome Trust; National Human Genome Research Institute; University of Utah; Center for Individualized Medicine, Mayo Clinic; Mayo Clinic","keywords":"Variation (astronomy); Computer science; Identifier; Representation (politics); Identification (biology); Terminology; External Data Representation; Schema (genetic algorithms); Data science; Information retrieval; Artificial intelligence","authors":[{"name":"Alex H. Wagner","is_ca":false},{"name":"Lawrence Babb","is_ca":false},{"name":"Gil Alterovitz","is_ca":false},{"name":"Michael Baudis","is_ca":false},{"name":"Matthew Brush","is_ca":false},{"name":"Daniel Cameron","is_ca":false},{"name":"Melissa Cline","is_ca":false},{"name":"Malachi Griffith","is_ca":false},{"name":"Obi L. Griffith","is_ca":false},{"name":"Sarah Hunt","is_ca":false},{"name":"David Kreda","is_ca":false},{"name":"Jennifer Lee","is_ca":false},{"name":"Stephanie Li","is_ca":true},{"name":"Javier Ferreiros","is_ca":false},{"name":"Eric Moyer","is_ca":false},{"name":"Tristan Nelson","is_ca":false},{"name":"Ronak Y. Patel","is_ca":false},{"name":"Kevin Riehle","is_ca":false},{"name":"Peter N. Robinson","is_ca":false},{"name":"Shawn Rynearson","is_ca":false},{"name":"Helen Schuilenburg","is_ca":false},{"name":"Kirill Tsukanov","is_ca":false},{"name":"Brian Walsh","is_ca":false},{"name":"Melissa Konopko","is_ca":true},{"name":"Heidi L. Rehm","is_ca":false},{"name":"Andrew Yates","is_ca":false},{"name":"Robert R. Freimuth","is_ca":false},{"name":"Reece K. Hart","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01717231562835898,"gpt":0.2732130026309989,"spread":0.2560406870026399,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009086668,0.001526784,0.001242501,0.003893585,0.001391856,0.007025637,0.00525086,0.001913871,0.00579115],"category_scores_gemma":[0.02330418,0.0009485355,0.003444919,0.004287689,0.002209081,0.004687105,0.005299042,0.003090523,0.002543141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002162703,"about_ca_system_score_gemma":0.004689916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01269326,"about_ca_topic_score_gemma":0.0125744,"domain_scores_codex":[0.9937804,0.002490225,0.0007489066,0.000909092,0.001770881,0.0003004103],"domain_scores_gemma":[0.992547,0.003208913,0.0004574456,0.002401425,0.001192892,0.0001923649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002467471,0.00007102041,0.003490733,0.0006160112,0.0001861165,0.000626529,0.001134939,0.1200825,0.004162265,0.6766303,0.05734581,0.1354071],"study_design_scores_gemma":[0.00007149252,0.00006245359,0.0004078973,0.0002712734,0.00006938021,0.0004885506,0.0002768663,0.4136321,0.007399226,0.4375472,0.1396556,0.0001180076],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0007751084,0.00006287212,0.9893242,0.0002658772,0.00003750784,0.00009329092,0.001944782,0.006297513,0.001198921],"genre_scores_gemma":[0.03158324,0.0002553235,0.9513577,0.0003400038,0.00005549081,0.0005095706,0.01260553,0.001792851,0.001500278],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01269326,"threshold_uncertainty_score":0.04805547,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4405497558","doi":"10.1016/j.xgen.2024.100724","title":"Bridging genomics’ greatest challenge: The diversity gap","year":2024,"lang":"en","type":"review","venue":"Cell Genomics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Genome Canada","funders":"","keywords":"Bridging (networking); Genomics; Diversity (politics); Evolutionary biology; Computational biology; Biology; Computer science; Genetics; Genome; Sociology; Anthropology; Gene; Computer network","authors":[{"name":"Manuel Corpas","is_ca":false},{"name":"Mkpouto Pius","is_ca":false},{"name":"Marie Poburennaya","is_ca":false},{"name":"Heinner Guio","is_ca":false},{"name":"Miriam Dwek","is_ca":false},{"name":"Shivashankar H. Nagaraj","is_ca":false},{"name":"Catalina López-Correa","is_ca":true},{"name":"Alice B. Popejoy","is_ca":false},{"name":"Segun Fatumo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06360060501938972,"gpt":0.305083741294243,"spread":0.2414831362748533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.006183421,0.0009984632,0.001704142,0.002871157,0.0009273523,0.004209933,0.001861317,0.004706304,0.005486852],"category_scores_gemma":[0.009069043,0.0003828054,0.0008199223,0.00282892,0.003846213,0.009357494,0.003864081,0.006650566,0.002552849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002353374,"about_ca_system_score_gemma":0.00518829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002238864,"about_ca_topic_score_gemma":0.003250989,"domain_scores_codex":[0.9982451,0.0008427895,0.0001299154,0.0002149666,0.0004397295,0.0001275083],"domain_scores_gemma":[0.9927852,0.005429994,0.0002777055,0.0002345727,0.0007705464,0.000501984],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005108722,0.00002944849,0.0001993172,0.009995936,0.0001358751,0.000236617,0.0005206991,0.0003288424,0.0003889698,0.08692133,0.09782787,0.803364],"study_design_scores_gemma":[0.000006273083,0.00002289912,0.0002151775,0.006152928,0.00003492427,0.0004625989,0.0002474654,0.00005345491,0.00009661026,0.02457097,0.9681208,0.00001602867],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008160417,0.9793624,0.0007522408,0.01662539,0.001288506,0.000004972886,0.0000214136,0.00002028874,0.001843092],"genre_scores_gemma":[0.001735115,0.9852995,0.0009708515,0.008891359,0.001939631,0.00001681525,0.00003983924,0.00001670571,0.001090304],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9938166,"threshold_uncertainty_score":0.03270143,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4281789609","doi":"10.1016/j.xgen.2022.100133","title":"Population dynamics and genetic connectivity in recent chimpanzee history","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Primate Behavior and Ecology","field":"Psychology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University; University of Victoria","funders":"Agencia Estatal de Investigación; Max-Planck-Gesellschaft; National Institutes of Health; Generalitat de Catalunya; European Commission; Uganda National Council for Science and Technology; National Human Genome Research Institute; National Park Service; Wellcome Trust; Agence Nationale Des Parcs Nationaux; Vienna Science and Technology Fund; International Seafood Sustainability Foundation; Centres de Recerca de Catalunya; Tanzania Commission for Science and Technology","keywords":"Pan paniscus; Troglodytes; Evolutionary biology; Endangered species; Subspecies; Population; Genetic diversity; Geography; Demographic history; Biology; Ecology; Zoology; Demography; Habitat; Sociology","authors":[{"name":"Claudia Fontsere","is_ca":false},{"name":"Martin Kuhlwilm","is_ca":false},{"name":"Carlos Morcillo-Suárez","is_ca":false},{"name":"Marina Álvarez-Estapé","is_ca":false},{"name":"Jack D. Lester","is_ca":false},{"name":"Paolo Gratton","is_ca":false},{"name":"Joshua M. Schmidt","is_ca":false},{"name":"Paula Dieguez","is_ca":false},{"name":"Thierry Aebischer","is_ca":false},{"name":"Paula Álvarez-Varona","is_ca":false},{"name":"Anthony Agbor","is_ca":false},{"name":"Samuel Angedakin","is_ca":false},{"name":"Alfred Kwabena Assumang","is_ca":false},{"name":"Emmanuel Ayuk Ayimisin","is_ca":false},{"name":"Emma Bailey","is_ca":false},{"name":"Donatienne Barubiyo","is_ca":false},{"name":"Mattia Bessone","is_ca":false},{"name":"Andrea Carretero-Alonso","is_ca":false},{"name":"Rebecca Chancellor","is_ca":false},{"name":"Heather Cohen","is_ca":false},{"name":"Emmanuel Danquah","is_ca":false},{"name":"Tobias Deschner","is_ca":false},{"name":"Andrew Dunn","is_ca":false},{"name":"Jef Dupain","is_ca":false},{"name":"Villard Ebot Egbe","is_ca":false},{"name":"Olga Feliu","is_ca":false},{"name":"Annemarie Goedmakers","is_ca":false},{"name":"Anne‐Céline Granjon","is_ca":false},{"name":"Josephine Head","is_ca":false},{"name":"Daniela Hedwig","is_ca":false},{"name":"Veerle Hermans","is_ca":false},{"name":"R. Adriana Hernández‐Aguilar","is_ca":false},{"name":"Inaoyom Imong","is_ca":false},{"name":"Sorrel Jones","is_ca":false},{"name":"Jessica Junker","is_ca":false},{"name":"Parag Kadam","is_ca":false},{"name":"M. L. Kaiser","is_ca":false},{"name":"Mbangi Kambere","is_ca":false},{"name":"Magloire V. Kambale","is_ca":false},{"name":"Ammie K. Kalan","is_ca":true},{"name":"Ivonne Kienast","is_ca":false},{"name":"Deo Kujirakwinja","is_ca":false},{"name":"Kevin E. Langergraber","is_ca":false},{"name":"Juan Lapuente","is_ca":false},{"name":"Bradley Larson","is_ca":false},{"name":"Anne Laudisoit","is_ca":false},{"name":"Kevin Lee","is_ca":false},{"name":"Manuel Llana","is_ca":false},{"name":"Miquel Llorente","is_ca":false},{"name":"Sergio Marrocoli","is_ca":false},{"name":"David Morgan","is_ca":false},{"name":"Felix Mulindahabi","is_ca":false},{"name":"Mizuki Murai","is_ca":false},{"name":"Emily Neil","is_ca":false},{"name":"Sonia Nicholl","is_ca":false},{"name":"Stuart Nixon","is_ca":false},{"name":"Emma Normand","is_ca":false},{"name":"Christopher Orbell","is_ca":false},{"name":"Lucy Jayne Ormsby","is_ca":false},{"name":"Liliana Pacheco","is_ca":false},{"name":"A. Piel","is_ca":false},{"name":"Laura Riera","is_ca":false},{"name":"Martha M. Robbins","is_ca":false},{"name":"Aaron Rundus","is_ca":false},{"name":"Crickette Sanz","is_ca":false},{"name":"Lilah Sciaky","is_ca":false},{"name":"Volker Sommer","is_ca":false},{"name":"Fiona A. Stewart","is_ca":false},{"name":"Nikki Tagg","is_ca":false},{"name":"Luc Roscelin Dongmo Tédonzong","is_ca":false},{"name":"Els Ton","is_ca":false},{"name":"Joost van Schijndel","is_ca":false},{"name":"Virginie Vergnes","is_ca":false},{"name":"Erin G. Wessling","is_ca":false},{"name":"Jacob Willie","is_ca":false},{"name":"Roman M. Wittig","is_ca":false},{"name":"Yisa Ginath Yuh","is_ca":true},{"name":"Kyle Yurkiw","is_ca":false},{"name":"Klaus Zuberbuehler","is_ca":false},{"name":"Jochen Hecht","is_ca":false},{"name":"Linda Vigilant","is_ca":false},{"name":"Christophe Boesch","is_ca":false},{"name":"Aida M. Andrés","is_ca":false},{"name":"David A. Hughes","is_ca":false},{"name":"Hjalmar S. Kühl","is_ca":false},{"name":"Esther Lizano","is_ca":false},{"name":"Mimi Arandjelovic","is_ca":false},{"name":"Tomàs Marquès‐Bonet","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02350824583265759,"gpt":0.257851060364776,"spread":0.2343428145321184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004422872,0.0001240399,0.0001875192,0.001587523,0.0003759335,0.0007310559,0.0002308617,0.0002401565,0.001197954],"category_scores_gemma":[0.001678762,0.0001753741,0.0001082387,0.001186122,0.0008058536,0.0007085007,0.0006531283,0.0003613815,0.00008802355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002259205,"about_ca_system_score_gemma":0.00008561746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002905161,"about_ca_topic_score_gemma":0.006847441,"domain_scores_codex":[0.9997773,0.00006295126,0.000009710703,0.0001053695,0.00002116555,0.0000235435],"domain_scores_gemma":[0.9995388,0.000139472,0.000160552,0.00005356199,0.0000451614,0.00006253652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008946969,0.00002389407,0.9579368,0.00004302562,0.000203727,0.0002419073,0.003505875,0.002500591,0.01516695,0.001652479,0.0001467946,0.01848855],"study_design_scores_gemma":[0.000001699223,0.0000166049,0.9976597,0.000004934834,0.00001205519,0.0001172751,0.0005065583,0.0006637424,0.0001152759,0.0005037449,0.0003923516,0.000006065124],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992194,0.0001494803,0.0002887025,0.00003102095,9.632803e-7,0.000001151243,0.00004854244,0.000004899416,0.0002558745],"genre_scores_gemma":[0.9996368,0.00007068813,0.0001827314,0.000006079079,0.000002426076,0.000002059202,0.00005628847,0.000002047039,0.00004092375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002905161,"threshold_uncertainty_score":0.005776584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4381432912","doi":"10.1016/j.xgen.2023.100346","title":"Discovering cellular programs of intrinsic and extrinsic drivers of metabolic traits using LipocyteProfiler","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institutes of Health; Joslin Diabetes Center; Universität Ulm; Novo Nordisk Fonden; Doris Duke Charitable Foundation; Else Kröner-Fresenius-Stiftung; Novo Nordisk; Harvard Medical School; National Institute of Diabetes and Digestive and Kidney Diseases; Bill and Melinda Gates Foundation; Li Ka Shing Foundation; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Broad Institute; NIHR Oxford Biomedical Research Centre; Wellcome Trust; American Diabetes Association","keywords":"Biology; Computational biology; Disease; Phenotype; Profiling (computer programming); Quantitative trait locus; Context (archaeology); Effector; Genetics; Gene; Bioinformatics; Computer science; Medicine; Cell biology; Pathology","authors":[{"name":"Samantha Laber","is_ca":false},{"name":"Sophie Strobel","is_ca":false},{"name":"Josep M. Mercader","is_ca":false},{"name":"Hesam Dashti","is_ca":false},{"name":"Felipe R. C. dos Santos","is_ca":false},{"name":"Phil Kubitz","is_ca":false},{"name":"Maya Jackson","is_ca":false},{"name":"Alina Ainbinder","is_ca":false},{"name":"Julius Honecker","is_ca":false},{"name":"Saaket Agrawal","is_ca":false},{"name":"Garrett Garborcauskas","is_ca":false},{"name":"David R. Stirling","is_ca":false},{"name":"Aaron Leong","is_ca":false},{"name":"Katherine Figueroa","is_ca":false},{"name":"Nasa Sinnott-Armstrong","is_ca":false},{"name":"Maria Kost‐Alimova","is_ca":false},{"name":"Giacomo Deodato","is_ca":false},{"name":"Alycen Harney","is_ca":false},{"name":"Gregory P. Way","is_ca":false},{"name":"Alham Saadat","is_ca":false},{"name":"Sierra Harken","is_ca":false},{"name":"Saskia Reibe-Pal","is_ca":false},{"name":"Hannah Ebert","is_ca":false},{"name":"Yixin Zhang","is_ca":false},{"name":"Virtu Calabuig-Navarro","is_ca":false},{"name":"Elizabeth R. McGonagle","is_ca":false},{"name":"Adam Štefek","is_ca":false},{"name":"Josée Dupuis","is_ca":true},{"name":"Beth A. Cimini","is_ca":false},{"name":"Hans Hauner","is_ca":false},{"name":"Miriam S. Udler","is_ca":false},{"name":"Anne E. Carpenter","is_ca":false},{"name":"José C. Florez","is_ca":false},{"name":"Cecilia M. Lindgren","is_ca":false},{"name":"Suzanne B.R. Jacobs","is_ca":false},{"name":"Melina Claussnitzer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01347712201397075,"gpt":0.2351952809039814,"spread":0.2217181588900106,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006867052,0.0003986519,0.0004027245,0.0008646157,0.0002817151,0.0008441294,0.0003575299,0.0005056961,0.001913772],"category_scores_gemma":[0.0007986595,0.0003213085,0.0004090842,0.0003273907,0.0003034854,0.0004212561,0.0005897437,0.0007698939,0.0005522213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002882731,"about_ca_system_score_gemma":0.0003318951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005070342,"about_ca_topic_score_gemma":0.001426455,"domain_scores_codex":[0.9997937,0.00003481281,0.00001161872,0.0000704103,0.00005784099,0.00003176317],"domain_scores_gemma":[0.9996202,0.000155324,0.00008083667,0.00005977879,0.00003566934,0.00004821567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006086031,0.00008542173,0.0291287,0.0004147037,0.000158681,0.0003278037,0.0002743969,0.007106777,0.9067344,0.003320875,0.00350784,0.04833184],"study_design_scores_gemma":[0.00007507351,0.0002981632,0.057899,0.00009072571,0.0001572728,0.0009617271,0.0002637917,0.1802109,0.7351245,0.005105142,0.01971723,0.00009648137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6741207,0.0010435,0.3005348,0.0003445642,0.00008483289,0.0001387555,0.007566761,0.01292147,0.00324453],"genre_scores_gemma":[0.8245816,0.0007247952,0.1646769,0.0003401624,0.00002168869,0.0004261578,0.005163476,0.001551671,0.002513509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001913772,"threshold_uncertainty_score":0.006402254,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4323543680","doi":"10.1016/j.xgen.2023.100272","title":"The molecular consequences of androgen activity in the human breast","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network; Vector Institute","funders":"National Cancer Institute","keywords":"Androgen receptor; Androgen; Paracrine signalling; Biology; Endocrinology; Estrogen; Internal medicine; Estrogen receptor; Estrogen receptor alpha; Receptor; Medicine; Breast cancer; Hormone; Cancer","authors":[{"name":"Florian Raths","is_ca":false},{"name":"Mehran Karimzadeh","is_ca":true},{"name":"Nathan Ing","is_ca":false},{"name":"Andrew Martinez","is_ca":false},{"name":"Yoona Yang","is_ca":false},{"name":"Ying Qu","is_ca":false},{"name":"Tian-Yu Lee","is_ca":false},{"name":"Brianna Mulligan","is_ca":false},{"name":"Suzanne Devkota","is_ca":false},{"name":"Wayne T. Tilley","is_ca":false},{"name":"Theresa E. Hickey","is_ca":false},{"name":"Bo Wang","is_ca":true},{"name":"Armando E. Giuliano","is_ca":false},{"name":"Shikha Bose","is_ca":false},{"name":"Hani Goodarzi","is_ca":false},{"name":"Edward Ray","is_ca":false},{"name":"Xiaojiang Cui","is_ca":false},{"name":"Simon Knott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01577516706591861,"gpt":0.2380514421676744,"spread":0.2222762751017558,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008880282,0.00005398555,0.0001660391,0.0002042655,0.0001279235,0.0003209895,0.00008896735,0.0001343567,0.0006479933],"category_scores_gemma":[0.00009305892,0.00008749032,0.00009362039,0.0001791805,0.0001537812,0.0001006645,0.00009631204,0.0001224892,0.0002372178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001820523,"about_ca_system_score_gemma":0.0001587147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001645004,"about_ca_topic_score_gemma":0.003124183,"domain_scores_codex":[0.9999323,0.000008276957,0.000002493895,0.00001974018,0.00002570797,0.00001137919],"domain_scores_gemma":[0.9999658,0.000007170349,0.000007904071,0.00000458863,0.000006535337,0.000008025878],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006417269,0.000005642948,0.002841844,0.00003858079,0.000007024918,0.00009182283,0.00005898159,0.0001397088,0.9912608,0.0001976076,0.00007498207,0.005218903],"study_design_scores_gemma":[0.00001253293,0.0002215555,0.3936231,0.00002107399,0.00005539733,0.001447745,0.0007271942,0.002022754,0.5912209,0.0008262356,0.009801037,0.00002048335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900807,0.004292373,0.002933189,0.0001112252,0.00001998834,0.000006396083,0.0006772208,0.00007960643,0.001799327],"genre_scores_gemma":[0.9952149,0.001898655,0.00118799,0.00005716645,0.000008621835,0.000006170245,0.00029609,0.00001110785,0.001319207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001645004,"threshold_uncertainty_score":0.003270924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4381952014","doi":"10.1016/j.xgen.2023.100347","title":"Cystatin C is glucocorticoid responsive, directs recruitment of Trem2+ macrophages, and predicts failure of cancer immunotherapy","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Medical Research Council; Haridus- ja Teadusministeerium; Canadian Institutes of Health Research; Directorate for Biological Sciences; National Institutes of Health; Vetenskapsrådet; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory; Cold Spring Harbor Laboratory; Alberta Innovates; Killam Trusts; Wellcome Trust; National Institute of General Medical Sciences; Bundesministerium für Bildung und Forschung; Simons Foundation","keywords":"Cancer; Immunotherapy; Cancer research; Cancer immunotherapy; Cystatin; Cystatin C; Biology; Internal medicine; Medicine; Immunology","authors":[{"name":"Sam O. Kleeman","is_ca":false},{"name":"Tuba Mansoor Thakir","is_ca":false},{"name":"Breanna R. Demestichas","is_ca":false},{"name":"Nicholas Mourikis","is_ca":false},{"name":"Dominik Loiero","is_ca":false},{"name":"Miriam Ferrer","is_ca":false},{"name":"Sean Bankier","is_ca":false},{"name":"Yosef Joseph Rene Amel Riazat‐Kesh","is_ca":false},{"name":"Hassal Lee","is_ca":false},{"name":"Dimitrios Chantzichristos","is_ca":false},{"name":"Claire Regan","is_ca":false},{"name":"Jonathan Preall","is_ca":false},{"name":"Sarthak Sinha","is_ca":true},{"name":"Nicole L. Rosin","is_ca":true},{"name":"Bryan G. Yipp","is_ca":true},{"name":"Luiz G. Almeida","is_ca":true},{"name":"Jeff Biernaskie","is_ca":true},{"name":"Antoine Dufour","is_ca":true},{"name":"Pinkus Tober‐Lau","is_ca":false},{"name":"Arno Ruusalepp","is_ca":false},{"name":"Johan Björkegren","is_ca":false},{"name":"Markus Ralser","is_ca":false},{"name":"Florian Kurth","is_ca":false},{"name":"Vadim Demichev","is_ca":false},{"name":"Todd Heywood","is_ca":false},{"name":"Qing Gao","is_ca":false},{"name":"Gudmundur Johannsson","is_ca":false},{"name":"Viktor H. Koelzer","is_ca":false},{"name":"Brian R. Walker","is_ca":false},{"name":"Hannah V. Meyer","is_ca":false},{"name":"Tobias Janowitz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03559488195743402,"gpt":0.3014534868963637,"spread":0.2658586049389297,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006873279,0.0001623187,0.0002139006,0.0004067051,0.0001640592,0.0003752579,0.0001681875,0.0003062591,0.001309613],"category_scores_gemma":[0.002155493,0.0001209828,0.0002445602,0.0004520236,0.0002284949,0.0001396289,0.0002618513,0.0003840755,0.0001242164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002742815,"about_ca_system_score_gemma":0.000251623,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002599062,"about_ca_topic_score_gemma":0.00180846,"domain_scores_codex":[0.999691,0.0001340769,0.00003056343,0.00007234106,0.00004049437,0.00003156307],"domain_scores_gemma":[0.9989298,0.0002960843,0.0005138492,0.00009564105,0.00004601283,0.0001186294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008003467,0.00002643722,0.9871765,0.00002835291,0.000106968,0.0002604037,0.00007263164,0.0002908401,0.005630566,0.0001127078,0.0002041114,0.005290312],"study_design_scores_gemma":[0.0000128754,0.0001325666,0.9958443,0.00001165335,0.0000591237,0.0008528876,0.0000599257,0.001010973,0.001493745,0.0001307792,0.0003868022,0.000004348784],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988976,0.0002488555,0.0002643012,0.00006742455,0.000002699593,0.000003924227,0.0002470084,0.000004448938,0.000263787],"genre_scores_gemma":[0.9994242,0.00008450739,0.0001443389,0.00001707149,0.00000249047,0.000003882541,0.0001697084,0.000001632853,0.000152123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002599062,"threshold_uncertainty_score":0.005167842,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313214635","doi":"10.1016/j.xgen.2022.100233","title":"Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Autosome; Biology; Genetics; Haplotype; DNA methylation; Indel; DNA sequencing; Human genome; Allele; Chromosome; Genome; DNA; Gene; Genotype; Single-nucleotide polymorphism","authors":[{"name":"Vahid Akbari","is_ca":true},{"name":"Vincent C. T. Hanlon","is_ca":true},{"name":"Kieran O’Neill","is_ca":true},{"name":"Louis Lefebvre","is_ca":true},{"name":"Kasmintan A. Schrader","is_ca":true},{"name":"Peter M. Lansdorp","is_ca":true},{"name":"Steven J.M. Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0227371679962748,"gpt":0.2406285228433502,"spread":0.2178913548470754,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005551708,0.0003664229,0.000337453,0.0005122818,0.000316723,0.0004373874,0.0003784173,0.0005162073,0.00135229],"category_scores_gemma":[0.0009804729,0.0003017195,0.0003836548,0.000347763,0.000301044,0.0002443106,0.0005964137,0.0005889935,0.0005583644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003017836,"about_ca_system_score_gemma":0.0003152896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00154096,"about_ca_topic_score_gemma":0.006923826,"domain_scores_codex":[0.9995503,0.00005338738,0.0000284279,0.0002016539,0.0001278664,0.00003827647],"domain_scores_gemma":[0.9994099,0.0001936039,0.0001395745,0.0001108951,0.00009015603,0.00005572769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007456752,0.00001315344,0.008103126,0.00006308163,0.00004439901,0.0000733433,0.00009313619,0.0006268108,0.981399,0.0003491646,0.0001342914,0.009025955],"study_design_scores_gemma":[0.00001817313,0.0001167566,0.04836078,0.0000220681,0.00007083957,0.0006010222,0.00009134474,0.02465208,0.9182304,0.001072958,0.006714761,0.00004884997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7207198,0.0007663037,0.2662858,0.0001269528,0.00009669178,0.0002316054,0.007066634,0.001658633,0.003047505],"genre_scores_gemma":[0.7342213,0.0004075739,0.2566358,0.0002176714,0.00002167518,0.0002349882,0.004707266,0.0003999282,0.003153743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00154096,"threshold_uncertainty_score":0.004523814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4382345469","doi":"10.1016/j.xgen.2023.100316","title":"Genome-wide structural variant analysis identifies risk loci for non-Alzheimer’s dementias","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; Sunnybrook Health Science Centre; Heart and Stroke Foundation; University of Toronto; University of New Brunswick; Health Sciences Centre","funders":"National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; National Institute on Aging; National Institutes of Health; Parkinson's UK","keywords":"C9orf72; Frontotemporal dementia; Amyotrophic lateral sclerosis; Structural variation; Genetics; Biology; Dementia; Dementia with Lewy bodies; Locus (genetics); Lewy body; Computational biology; Disease; Genome; Neuroscience; Gene; Medicine; Pathology","authors":[{"name":"Karri Kaivola","is_ca":false},{"name":"Ruth Chia","is_ca":false},{"name":"Jinhui Ding","is_ca":false},{"name":"Memoona Rasheed","is_ca":false},{"name":"Masashi Fujita","is_ca":false},{"name":"Vilas Menon","is_ca":false},{"name":"Ronald L. Walton","is_ca":false},{"name":"Ryan L. Collins","is_ca":false},{"name":"Kimberley J. Billingsley","is_ca":false},{"name":"Harrison Brand","is_ca":false},{"name":"Michael E. Talkowski","is_ca":false},{"name":"Xuefang Zhao","is_ca":false},{"name":"Ramita Dewan","is_ca":false},{"name":"Ali Stark","is_ca":false},{"name":"Anindita Ray","is_ca":false},{"name":"Sultana Solaiman","is_ca":false},{"name":"Pilar Álvarez Jerez","is_ca":false},{"name":"Laksh Malik","is_ca":false},{"name":"Ted M. Dawson","is_ca":false},{"name":"Liana S. Rosenthal","is_ca":false},{"name":"Marilyn S. Albert","is_ca":false},{"name":"Olga Pletnikova","is_ca":false},{"name":"Juan C. Troncoso","is_ca":false},{"name":"Mario Masellis","is_ca":true},{"name":"Julia Keith","is_ca":true},{"name":"Sandra E. Black","is_ca":true},{"name":"Luigi Ferrucci","is_ca":false},{"name":"Susan M. Resnick","is_ca":false},{"name":"Toshiko Tanaka","is_ca":false},{"name":"Anthony R. Soltis","is_ca":false},{"name":"Coralie Viollet","is_ca":false},{"name":"Gauthaman Sukumar","is_ca":false},{"name":"Camille Alba","is_ca":false},{"name":"Nathaniel M. Lott","is_ca":false},{"name":"Elisa McGrath Martinez","is_ca":false},{"name":"Meila Tuck","is_ca":false},{"name":"Jatinder Singh","is_ca":false},{"name":"Dagmar Bačíková","is_ca":false},{"name":"Xijun Zhang","is_ca":false},{"name":"Daniel N. Hupalo","is_ca":false},{"name":"Adelani Adeleye","is_ca":false},{"name":"Matthew D. Wilkerson","is_ca":false},{"name":"Harvey B. Pollard","is_ca":false},{"name":"Clifton L. Dalgard","is_ca":false},{"name":"Ziv Gan‐Or","is_ca":false},{"name":"Ekaterina Rogaeva","is_ca":false},{"name":"Alexis Brice","is_ca":false},{"name":"Suzanne Lesage","is_ca":false},{"name":"Georgia Xiromerisiou","is_ca":false},{"name":"Andrea Calvo","is_ca":false},{"name":"Antonio Canosa","is_ca":false},{"name":"Adriano Chiò","is_ca":false},{"name":"Giancarlo Logroscino","is_ca":false},{"name":"Gabriele Mora","is_ca":false},{"name":"Reijko Krüger","is_ca":false},{"name":"Patrick May","is_ca":false},{"name":"Daniel Alcolea","is_ca":false},{"name":"Jordi Clarimón","is_ca":false},{"name":"Juan Fortea","is_ca":false},{"name":"Isabel González Aramburu","is_ca":false},{"name":"Jon Infante","is_ca":false},{"name":"Carmen Lage","is_ca":false},{"name":"Alberto Lleó","is_ca":false},{"name":"Pau Pástor","is_ca":false},{"name":"Pascual Sánchez‐Juan","is_ca":false},{"name":"Francesca Brett","is_ca":false},{"name":"Dag Aarsland","is_ca":false},{"name":"Safa Al‐Sarraj","is_ca":false},{"name":"Johannes Attems","is_ca":false},{"name":"Steve Gentleman","is_ca":true},{"name":"John Hardy","is_ca":false},{"name":"Angela Hodges","is_ca":true},{"name":"Seth Love","is_ca":true},{"name":"Ian G. McKeith","is_ca":false},{"name":"Christopher M. Morris","is_ca":false},{"name":"Huw R. Morris","is_ca":false},{"name":"Stuart Pickering‐Brown","is_ca":false},{"name":"Alan Thomas","is_ca":false},{"name":"Claire Troakes","is_ca":false},{"name":"Matthew J. Barrett","is_ca":false},{"name":"Thomas G. Beach","is_ca":false},{"name":"Lynn M. Bekris","is_ca":false},{"name":"David A. Bennett","is_ca":false},{"name":"Bradley F. Boeve","is_ca":false},{"name":"Dennis W. Dickson","is_ca":false},{"name":"Kelley Faber","is_ca":false},{"name":"Margaret E. Flanagan","is_ca":false},{"name":"Tatiana Foroud","is_ca":false},{"name":"Alison Goate","is_ca":false},{"name":"David S. Goldstein","is_ca":false},{"name":"Horacio Kaufmann","is_ca":false},{"name":"Walter A. Kukull","is_ca":false},{"name":"James B. Leverenz","is_ca":false},{"name":"Grisel Lopez","is_ca":false},{"name":"Qinwen Mao","is_ca":false},{"name":"Eliezer Masliah","is_ca":false},{"name":"Edwin S. Monuki","is_ca":false},{"name":"Kathy L. Newell","is_ca":false},{"name":"Jose‐Alberto Palma","is_ca":false},{"name":"Matthew Perkins","is_ca":false},{"name":"Alan E. Renton","is_ca":false},{"name":"Owen A. Ross","is_ca":false},{"name":"Clemens R. Scherzer","is_ca":false},{"name":"Vikram G. Shakkottai","is_ca":false},{"name":"Ellen Sidransky","is_ca":false},{"name":"Nahid Tayebi","is_ca":false},{"name":"Eric Topol","is_ca":false},{"name":"Ali Torkamani","is_ca":false},{"name":"Randy Woltjer","is_ca":false},{"name":"Zbigniew K. Wszołek","is_ca":false},{"name":"Sonja W. Scholz","is_ca":false},{"name":"Robert H. Baloh","is_ca":false},{"name":"Robert Bowser","is_ca":false},{"name":"James R. Broach","is_ca":false},{"name":"William Camu","is_ca":false},{"name":"Johnathan Cooper‐Knock","is_ca":false},{"name":"Carsten Drepper","is_ca":false},{"name":"Vivian E. Drory","is_ca":false},{"name":"Travis Dunckley","is_ca":false},{"name":"Eva L. Feldman","is_ca":false},{"name":"Pietro Fratta","is_ca":false},{"name":"Glenn S. Gerhard","is_ca":false},{"name":"Summer Gibson","is_ca":false},{"name":"Jonathan D. Glass","is_ca":false},{"name":"Matthew B. Harms","is_ca":false},{"name":"Terry Heiman‐Patterson","is_ca":false},{"name":"Lilja Jansson","is_ca":false},{"name":"Janine Kirby","is_ca":false},{"name":"Justin Kwan","is_ca":false},{"name":"Hannu Laaksovirta","is_ca":false},{"name":"John E. Landers","is_ca":false},{"name":"Francesco Landi","is_ca":false},{"name":"Isabelle Le Ber","is_ca":false},{"name":"Serge Lumbroso","is_ca":false},{"name":"Daniel J. MacGowan","is_ca":false},{"name":"Nicholas J. Maragakis","is_ca":false},{"name":"Kévin Mouzat","is_ca":false},{"name":"Liisa Myllykangas","is_ca":false},{"name":"Richard W. Orrell","is_ca":false},{"name":"Lyle W. Ostrow","is_ca":false},{"name":"Roger Pamphlett","is_ca":false},{"name":"Erik P. Pioro","is_ca":false},{"name":"Stefan M. Pulst","is_ca":false},{"name":"John Ravits","is_ca":false},{"name":"Wim Robberecht","is_ca":false},{"name":"Jeffrey D. Rothstein","is_ca":false},{"name":"Michael Sendtner","is_ca":false},{"name":"Pamela J. Shaw","is_ca":false},{"name":"Katie Sidle","is_ca":false},{"name":"Zachary Simmons","is_ca":false},{"name":"Thor D. Stein","is_ca":false},{"name":"David J. Stone","is_ca":false},{"name":"Pentti J. Tienari","is_ca":false},{"name":"Bryan J. Traynor","is_ca":false},{"name":"Miko Valori","is_ca":false},{"name":"Philip Van Damme","is_ca":false},{"name":"Vivianna M. Van Deerlin","is_ca":false},{"name":"Ludo Van Den Bosch","is_ca":false},{"name":"Lorne Zinman","is_ca":false},{"name":"Letizia Mazzini","is_ca":false},{"name":"Sandra D’Alfonso","is_ca":false},{"name":"Cristina Moglia","is_ca":false},{"name":"Philip L. De Jager","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03719809736028493,"gpt":0.3009235253844618,"spread":0.2637254280241769,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007398937,0.0003795479,0.00036711,0.00193582,0.0003463459,0.0005356493,0.0003367487,0.000406231,0.001092833],"category_scores_gemma":[0.001783895,0.000166397,0.0005425391,0.001401529,0.0002661564,0.0001199788,0.0003654588,0.0003091962,0.000138965],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001535248,"about_ca_system_score_gemma":0.0001962365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003225064,"about_ca_topic_score_gemma":0.007108935,"domain_scores_codex":[0.9995432,0.00008734447,0.00005188974,0.000188568,0.00008652634,0.00004258567],"domain_scores_gemma":[0.9994323,0.0002674116,0.0001349004,0.00005381514,0.00004727209,0.00006435101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00182972,0.0001007508,0.851705,0.0001514166,0.001150107,0.003127527,0.0006655182,0.002968048,0.1077588,0.0006379614,0.0007678586,0.02913729],"study_design_scores_gemma":[0.00006236452,0.0001360169,0.986653,0.00001582224,0.0002862035,0.00199034,0.0001227431,0.004454088,0.004624817,0.0005604431,0.00107525,0.00001884596],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976287,0.0001898413,0.001207252,0.00003177557,0.000003761791,0.0000097233,0.0006716721,0.00002784854,0.0002294343],"genre_scores_gemma":[0.9969969,0.0001035584,0.00167179,0.00002560421,0.000007660305,0.000007034346,0.001061892,0.00001386382,0.0001117397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003225064,"threshold_uncertainty_score":0.006412566,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3213068415","doi":"10.1016/j.xgen.2021.100030","title":"GA4GH Passport standard for digital identity and access permissions","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics; Systems, Applications & Products in Data Processing (Canada); McGill University; Google (Canada)","funders":"U.S. National Library of Medicine; National Cancer Institute; Canadian Open Neuroscience Platform; Horizon 2020 Framework Programme; Academy of Finland; European Bioinformatics Institute; University of Chicago; Harvard University; Google; Bayer; Novartis; European Commission; Broad Institute; International Business Machines Corporation; National Human Genome Research Institute; Wellcome Trust; Intel Corporation","keywords":"Data sharing; Computer science; Data access; Identity management; Implementation; World Wide Web; Big data; Data Protection Act 1998; Data quality; Access management; Identity (music); Data management; Authentication (law); Computer security; Internet privacy; Data science; Database; Business; Service (business)","authors":[{"name":"Craig Voisin","is_ca":true},{"name":"Mikael Lindén","is_ca":false},{"name":"Stephanie O. M. Dyke","is_ca":true},{"name":"Sarion R. Bowers","is_ca":false},{"name":"Pinar Alper","is_ca":false},{"name":"Maxmillian P. Barkley","is_ca":false},{"name":"David L. Bernick","is_ca":false},{"name":"Jianpeng Chao","is_ca":true},{"name":"Mélanie Courtot","is_ca":false},{"name":"Francis Jeanson","is_ca":true},{"name":"Melissa Konopko","is_ca":true},{"name":"Martin Kuba","is_ca":false},{"name":"Jonathan Lawson","is_ca":false},{"name":"Jaakko Leinonen","is_ca":false},{"name":"Stephanie Li","is_ca":true},{"name":"Vivian Ota Wang","is_ca":false},{"name":"Anthony Philippakis","is_ca":false},{"name":"Kathy Reinold","is_ca":false},{"name":"Gregory A. Rushton","is_ca":false},{"name":"Dylan Spalding","is_ca":false},{"name":"Juha Törnroos","is_ca":false},{"name":"Ilya Tulchinsky","is_ca":false},{"name":"Jaime M. Guidry Auvil","is_ca":false},{"name":"Tommi Nyrönen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.4650920793697197,"gpt":0.5794638595990629,"spread":0.1143717802293431,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.03162887,0.001137247,0.001084785,0.004197585,0.004175704,0.01674059,0.004964609,0.009765111,0.02237674],"category_scores_gemma":[0.06903678,0.001647403,0.001879121,0.003758925,0.005647596,0.01434453,0.0123475,0.01010401,0.02397889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006219223,"about_ca_system_score_gemma":0.0195982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01285144,"about_ca_topic_score_gemma":0.009254419,"domain_scores_codex":[0.9447985,0.01914056,0.007963235,0.003657375,0.01951516,0.004925238],"domain_scores_gemma":[0.9357704,0.01669245,0.00315555,0.02451027,0.01784534,0.002025865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001763354,0.0001090148,0.001090138,0.0003364667,0.00002805953,0.0005413351,0.001617215,0.001574422,0.002409835,0.8101514,0.127504,0.05446181],"study_design_scores_gemma":[0.00007591618,0.00007349942,0.000709658,0.0006134881,0.00003701532,0.0007306507,0.0004747912,0.003643479,0.004306112,0.1314721,0.8577448,0.0001185666],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.009206337,0.0011084,0.6235608,0.01380641,0.002167991,0.004864157,0.00659715,0.02338428,0.3153044],"genre_scores_gemma":[0.1622323,0.002236754,0.580079,0.01930254,0.001121153,0.01231375,0.02284948,0.005857731,0.1940073],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9950354,"threshold_uncertainty_score":0.1672715,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4403381371","doi":"10.1016/j.xgen.2024.100674","title":"Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency; University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"British Columbia Knowledge Development Fund; National Institutes of Health; BC Cancer Foundation; Terry Fox Foundation; Genome British Columbia; Terry Fox Research Institute; Canada Foundation for Innovation; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Genome Canada","keywords":"Haplotype; DNA methylation; Computational biology; Biology; Genetics; Methylation; Cohort; Cancer; Evolutionary biology; DNA sequencing; Gene; Bioinformatics; Medicine; Genotype; Internal medicine","authors":[{"name":"Kieran O’Neill","is_ca":true},{"name":"Erin Pleasance","is_ca":true},{"name":"Jeremy Fan","is_ca":true},{"name":"Vahid Akbari","is_ca":true},{"name":"Glenn Chang","is_ca":true},{"name":"Katherine Dixon","is_ca":true},{"name":"Veronika Csizmók","is_ca":true},{"name":"Signe MacLennan","is_ca":true},{"name":"Vanessa Porter","is_ca":true},{"name":"Andrew Galbraith","is_ca":true},{"name":"Cameron J. Grisdale","is_ca":true},{"name":"Luka Culibrk","is_ca":true},{"name":"John H. Dupuis","is_ca":true},{"name":"Richard Corbett","is_ca":true},{"name":"James Hopkins","is_ca":true},{"name":"Reanne Bowlby","is_ca":true},{"name":"Pawan Pandoh","is_ca":true},{"name":"Duane E. Smailus","is_ca":true},{"name":"Dean Cheng","is_ca":true},{"name":"Tina Wong","is_ca":true},{"name":"Connor Frey","is_ca":true},{"name":"Yaoqing Shen","is_ca":true},{"name":"Eleanor Lewis","is_ca":true},{"name":"Luis F. Paulin","is_ca":false},{"name":"Fritz J. Sedlazeck","is_ca":false},{"name":"Jessica Nelson","is_ca":true},{"name":"Eric Chuah","is_ca":true},{"name":"Karen Mungall","is_ca":true},{"name":"Richard A. Moore","is_ca":true},{"name":"Robin Coope","is_ca":true},{"name":"Andrew J. Mungall","is_ca":true},{"name":"Melissa K. McConechy","is_ca":true},{"name":"Laura M. Williamson","is_ca":true},{"name":"Kasmintan A. Schrader","is_ca":true},{"name":"Stephen Yip","is_ca":true},{"name":"Marco A. Marra","is_ca":true},{"name":"Janessa Laskin","is_ca":false},{"name":"Steven J.M. Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01226342416880211,"gpt":0.2708570936523012,"spread":0.258593669483499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009175351,0.0005517277,0.0007521743,0.001152282,0.0006499949,0.0008065085,0.0006648311,0.0008315032,0.004305052],"category_scores_gemma":[0.002460638,0.0002700718,0.0005041228,0.001294507,0.0002557408,0.0002811535,0.0009864898,0.0007058477,0.0017559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005427612,"about_ca_system_score_gemma":0.00083929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005630359,"about_ca_topic_score_gemma":0.01821205,"domain_scores_codex":[0.999356,0.00007944917,0.00005232244,0.0002921341,0.0001383529,0.00008185914],"domain_scores_gemma":[0.9982359,0.0005165853,0.0002430028,0.0004472701,0.0003332591,0.0002238226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004135896,0.0003715071,0.5511581,0.001596111,0.001649076,0.002129704,0.0007252239,0.01133803,0.1604723,0.002790133,0.1489572,0.1146767],"study_design_scores_gemma":[0.0006019286,0.000714945,0.6669816,0.0002616578,0.0008731489,0.004325553,0.0005313739,0.01373755,0.05640303,0.006553381,0.2488546,0.0001612837],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.4710675,0.001930378,0.01091313,0.0007542087,0.0001145005,0.00009926236,0.5090727,0.001406146,0.00464218],"genre_scores_gemma":[0.2925693,0.0005551645,0.0106801,0.0005174944,0.00005933422,0.0001572493,0.692291,0.0002986441,0.002871745],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005630359,"threshold_uncertainty_score":0.01440185,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4398234488","doi":"10.1016/j.xgen.2024.100566","title":"Meningioma transcriptomic landscape demonstrates novel subtypes with regional associated biology and patient outcome","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Meningioma and schwannoma management","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute","keywords":"Meningioma; Identification (biology); Computational biology; Transcriptome; Metadata; Grading (engineering); Precision oncology; Computer science; Biology; Data science; Bioinformatics; Precision medicine; Medicine; Ecology; Pathology; Gene; World Wide Web; Genetics; Gene expression","authors":[{"name":"H. Nayanga Thirimanne","is_ca":false},{"name":"Damian Almiron-Bonnin","is_ca":false},{"name":"Nicholas Nuechterlein","is_ca":false},{"name":"Sonali Arora","is_ca":false},{"name":"Matt Jensen","is_ca":false},{"name":"Carolina A. Parada","is_ca":false},{"name":"Chengxiang Qiu","is_ca":false},{"name":"Frank Szulzewsky","is_ca":false},{"name":"Collin W. English","is_ca":false},{"name":"William Chen","is_ca":false},{"name":"Philipp Sievers","is_ca":false},{"name":"Farshad Nassiri","is_ca":true},{"name":"Justin Z. Wang","is_ca":true},{"name":"Tiemo J. Klisch","is_ca":false},{"name":"Kenneth D. Aldape","is_ca":false},{"name":"Akash J. Patel","is_ca":false},{"name":"Patrick J. Cimino","is_ca":false},{"name":"Gelareh Zadeh","is_ca":true},{"name":"Felix Sahm","is_ca":false},{"name":"David R. Raleigh","is_ca":false},{"name":"Jay Shendure","is_ca":false},{"name":"Manuel Ferreira","is_ca":false},{"name":"Eric C. Holland","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02273107451384736,"gpt":0.2487246544502603,"spread":0.2259935799364129,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002122957,0.0001312196,0.0002285041,0.0006229238,0.0001612785,0.0004253482,0.0001021679,0.0001443715,0.001130191],"category_scores_gemma":[0.0006137043,0.00006992243,0.0002937148,0.000571439,0.0001482795,0.0001794125,0.0002739895,0.0001608879,0.0002525315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002762912,"about_ca_system_score_gemma":0.000143389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002308737,"about_ca_topic_score_gemma":0.004272083,"domain_scores_codex":[0.9998827,0.0000172659,0.000007621107,0.000046524,0.00002498488,0.00002078582],"domain_scores_gemma":[0.9998229,0.0000624638,0.00003783693,0.0000277247,0.00002980201,0.00001929047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001511817,0.00008947832,0.6478431,0.0002000996,0.0003783921,0.0007230809,0.0006396469,0.01244245,0.2570427,0.001091699,0.002930059,0.07510754],"study_design_scores_gemma":[0.0000172184,0.0001281579,0.9566618,0.00002375435,0.0001506545,0.0008969686,0.000466723,0.02074097,0.01463057,0.00260619,0.003644784,0.000032088],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933192,0.0002151425,0.002686173,0.00006405146,0.000002872312,0.00000574659,0.003086021,0.00007019197,0.0005507582],"genre_scores_gemma":[0.9931113,0.000135756,0.00174476,0.0000242074,0.000003760392,0.00001165735,0.004610628,0.00003260389,0.000325343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002308737,"threshold_uncertainty_score":0.004590571,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3211646893","doi":"10.1016/j.xgen.2021.100033","title":"CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis","year":2021,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"McGill University; SickKids Foundation; Hospital for Sick Children; McGill Genome Centre; University of Waterloo; Vector Institute; Ontario Genomics; Canada's Michael Smith Genome Sciences Centre; Providence Health Care; Provincial Health Services Authority; University of British Columbia; Zymeworks (Canada); Princess Margaret Cancer Centre; Institute of Cancer Research; Ontario Institute for Cancer Research; Université de Sherbrooke; University of Toronto; University Health Network","funders":"","keywords":"Genomics; Data science; Alliance; Big data; Key (lock); Computer science; World Wide Web; Genome; Data mining; Biology; Geography; Computer security","authors":[{"name":"Lewis Jonathan Dursi","is_ca":true},{"name":"Zoltán Bozóky","is_ca":true},{"name":"Richard de Borja","is_ca":true},{"name":"Haoyuan Li","is_ca":true},{"name":"David Bujold","is_ca":true},{"name":"Adam Lipski","is_ca":true},{"name":"Shaikh Farhan Rashid","is_ca":true},{"name":"Amanjeev Sethi","is_ca":true},{"name":"Neelam Memon","is_ca":true},{"name":"Dashaylan Naidoo","is_ca":true},{"name":"Felipe Coral-Sasso","is_ca":true},{"name":"Matthew L. Wong","is_ca":true},{"name":"P-O Quirion","is_ca":true},{"name":"Zhibin Lu","is_ca":true},{"name":"Samarth Agarwal","is_ca":true},{"name":"Yuriy V. Pavlov","is_ca":true},{"name":"Andrew Ponomarev","is_ca":true},{"name":"Mia Husić","is_ca":true},{"name":"Krista Pace","is_ca":true},{"name":"Samantha Palmer","is_ca":true},{"name":"Stephanie A. Grover","is_ca":true},{"name":"Sevan Hakgor","is_ca":true},{"name":"Lillian L. Siu","is_ca":true},{"name":"David Malkin","is_ca":true},{"name":"Carl Virtanen","is_ca":true},{"name":"Trevor J. Pugh","is_ca":true},{"name":"Pierre‐Étienne Jacques","is_ca":true},{"name":"Yann Joly","is_ca":true},{"name":"Steven J.M. Jones","is_ca":true},{"name":"Guillaume Bourque","is_ca":true},{"name":"Michael Brudno","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02850129202030238,"gpt":0.2802589828201911,"spread":0.2517576907998887,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006685073,0.001540201,0.001006636,0.004920021,0.004938517,0.00639778,0.004954265,0.001180442,0.01381934],"category_scores_gemma":[0.0130193,0.0007478245,0.001276087,0.009660622,0.001748707,0.004089258,0.007743514,0.002363349,0.005302813],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02976124,"about_ca_system_score_gemma":0.08292992,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9074046,"about_ca_topic_score_gemma":0.8793902,"domain_scores_codex":[0.9956454,0.0004984131,0.0002282944,0.0008195626,0.001927852,0.0008805189],"domain_scores_gemma":[0.9877903,0.001222386,0.000407085,0.002642015,0.005806827,0.002131346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001322954,0.0001064623,0.01113664,0.0005808182,0.000321584,0.0004358573,0.001029362,0.01195554,0.005663631,0.1166787,0.6921488,0.1586196],"study_design_scores_gemma":[0.0002487057,0.00005391025,0.008385706,0.0003688108,0.0001267625,0.0002403063,0.0007881704,0.05709161,0.007002907,0.05130821,0.8741192,0.0002656379],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01951945,0.004038453,0.4990783,0.01479994,0.001264971,0.001984571,0.225312,0.1380867,0.09591559],"genre_scores_gemma":[0.1265783,0.003233073,0.476929,0.004154036,0.0002138422,0.001401833,0.3485374,0.007550859,0.03140168],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9702387,"threshold_uncertainty_score":0.2159339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388522939","doi":"10.1016/j.xgen.2023.100439","title":"Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"European Research Council; Hansjörg Wyss Institute for Biologically Inspired Engineering, Harvard University; National University of Singapore; Tianjin University; Tsinghua University; March of Dimes Foundation; Macquarie University; National Science Foundation; Imperial College London; National Institute of General Medical Sciences; Engineering Research Centers; York University; Johns Hopkins University; National Institutes of Health","keywords":"Centromere; Chromosome; Genetics; Chromosome segregation; Biology; Saccharomyces cerevisiae; Meiosis; Genome; Mitosis; Computational biology; Yeast; Gene","authors":[{"name":"Jingchuan Luo","is_ca":false},{"name":"Luís A. Vale-Silva","is_ca":false},{"name":"Adhithi R. Raghavan","is_ca":false},{"name":"Guillaume Mercy","is_ca":false},{"name":"Jonna Heldrich","is_ca":false},{"name":"Xiaoji Sun","is_ca":false},{"name":"Mingyu Li","is_ca":false},{"name":"Weimin Zhang","is_ca":false},{"name":"Neta Agmon","is_ca":false},{"name":"Kun Yang","is_ca":false},{"name":"Jitong Cai","is_ca":false},{"name":"Giovanni Stracquadanio","is_ca":false},{"name":"Agnès Thierry","is_ca":false},{"name":"Yu Zhao","is_ca":false},{"name":"Camila Coelho","is_ca":false},{"name":"Laura H. McCulloch","is_ca":false},{"name":"Stephanie Lauer","is_ca":false},{"name":"Greg Adoff","is_ca":false},{"name":"Ju Young Ahn","is_ca":false},{"name":"Anvesh Annadanam","is_ca":false},{"name":"Surekha Annadanam","is_ca":false},{"name":"Henri Berger","is_ca":false},{"name":"Yi Chen","is_ca":false},{"name":"Michael Chickering","is_ca":false},{"name":"Oren Fishman","is_ca":false},{"name":"Jay Im","is_ca":false},{"name":"Sang-Min Kim","is_ca":false},{"name":"Sunghan Kim","is_ca":false},{"name":"Hong Seo Lim","is_ca":false},{"name":"Lauren Meyer","is_ca":false},{"name":"Allison Moyer","is_ca":false},{"name":"Natalie A. Murphy","is_ca":false},{"name":"Peter Natov","is_ca":false},{"name":"Arthur Radley","is_ca":false},{"name":"Lisa Z. Scheifele","is_ca":false},{"name":"Arushi Tripathy","is_ca":false},{"name":"Rebeca Vergara Greeno","is_ca":false},{"name":"Tony T. Wang","is_ca":false},{"name":"Nick Wilkerson","is_ca":false},{"name":"Karen Zeller","is_ca":false},{"name":"Tony Zheng","is_ca":false},{"name":"Vivian Zhou","is_ca":false},{"name":"David B. Kaback","is_ca":false},{"name":"Joel S. Bader","is_ca":false},{"name":"Leslie A. Mitchell","is_ca":false},{"name":"Julien Mozziconacci","is_ca":false},{"name":"Romain Koszul","is_ca":false},{"name":"Andreas Hochwagen","is_ca":false},{"name":"Jef D. Boeke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003120108556577636,"gpt":0.1750052823702837,"spread":0.1718851738137061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003784872,0.000425349,0.0001961007,0.0002108559,0.0001369692,0.0002514036,0.0002532146,0.0003336994,0.001815984],"category_scores_gemma":[0.0003274044,0.0001833683,0.0002097523,0.0002453217,0.0002371552,0.000183035,0.0002541894,0.0004214234,0.0002742473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003425353,"about_ca_system_score_gemma":0.0001875546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003639011,"about_ca_topic_score_gemma":0.0005238546,"domain_scores_codex":[0.9997907,0.00003347672,0.00002545016,0.0000580991,0.00006060741,0.00003149985],"domain_scores_gemma":[0.9997073,0.00008351096,0.0001049961,0.0000298268,0.00002667491,0.00004769196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007306627,0.00001404215,0.00007239589,0.00003192172,0.000004237029,0.00003255284,0.00001227891,0.0002565889,0.9983349,0.0001923264,0.00001500418,0.0009605489],"study_design_scores_gemma":[0.00001228505,0.000207214,0.0007217381,0.000002345204,0.00001094273,0.000109542,0.00001121092,0.0005874092,0.9962112,0.00003812468,0.002082621,0.000005445134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9810603,0.0009297287,0.01430354,0.00008514954,0.00003830995,0.00008212674,0.0006837081,0.0001564906,0.002660697],"genre_scores_gemma":[0.9867603,0.000613243,0.008708759,0.00004398308,0.000006966006,0.00004983014,0.001219649,0.0001336653,0.002463713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001815984,"threshold_uncertainty_score":0.006075025,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4323660523","doi":"10.1016/j.xgen.2023.100277","title":"Convergent coexpression of autism-associated genes suggests some novel risk genes may not be detectable in large-scale genetic studies","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of Mental Health; Università degli Studi di Trento; Thomas Jefferson University; University of Pennsylvania; F. Hoffmann-La Roche; University of Pittsburgh","keywords":"Gene; Autism spectrum disorder; Biology; Genetics; Autism; Genetic association; Schizophrenia (object-oriented programming); Psychology; Single-nucleotide polymorphism; Genotype; Developmental psychology; Psychiatry","authors":[{"name":"Calwing Liao","is_ca":true},{"name":"Mariana Moysés‐Oliveira","is_ca":false},{"name":"Celine E.F. De Esch","is_ca":false},{"name":"Riya Bhavsar","is_ca":false},{"name":"Xander Nuttle","is_ca":false},{"name":"Aiqun Li","is_ca":false},{"name":"Alex W. Yu","is_ca":false},{"name":"Nicholas D. Burt","is_ca":false},{"name":"Serkan Erdin","is_ca":false},{"name":"Jack Fu","is_ca":false},{"name":"Minghui Wang","is_ca":false},{"name":"Theodore Morley","is_ca":false},{"name":"Lide Han","is_ca":false},{"name":"Patrick A. Dion","is_ca":true},{"name":"Guy A. Rouleau","is_ca":true},{"name":"Bin Zhang","is_ca":false},{"name":"Kristen Brennand","is_ca":false},{"name":"Michael E. Talkowski","is_ca":false},{"name":"Douglas M. Ruderfer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04903056340196311,"gpt":0.3037354412517101,"spread":0.254704877849747,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006792151,0.0002741448,0.0003802423,0.0008817826,0.0004154258,0.0005033017,0.0002602504,0.0003491326,0.001463511],"category_scores_gemma":[0.001484321,0.0001578587,0.0003483398,0.0006619772,0.000569604,0.0003138351,0.0004938904,0.000439176,0.0003013357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002005818,"about_ca_system_score_gemma":0.0002401842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007121663,"about_ca_topic_score_gemma":0.001933191,"domain_scores_codex":[0.9993356,0.0000930794,0.00007005828,0.0002902276,0.0001548368,0.00005618695],"domain_scores_gemma":[0.9986936,0.0005885859,0.0002770149,0.0002300322,0.0001126057,0.00009811419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003004584,0.00005291164,0.2374791,0.0001744058,0.0004450271,0.002320305,0.0003472787,0.0005628289,0.7298467,0.002085016,0.0002146194,0.02617144],"study_design_scores_gemma":[0.00002776857,0.0002043912,0.8974027,0.00004694693,0.0003988195,0.007391564,0.0002890898,0.002443316,0.08561007,0.002989074,0.003172745,0.00002349836],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906473,0.0005151056,0.006451759,0.00009958797,0.00001253097,0.00001117245,0.0002847647,0.00003814487,0.001939611],"genre_scores_gemma":[0.9948442,0.0001968062,0.0040924,0.00007897374,0.000007985212,0.0000116289,0.0003293483,0.00002617429,0.0004124615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001463511,"threshold_uncertainty_score":0.004895926,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4362696984","doi":"10.1016/j.xgen.2023.100292","title":"Transposable elements are associated with the variable response to influenza infection","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institute of Genetics; Canada Research Chairs; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Immune system; Transcriptome; Epigenetics; Influenza A virus; Immunology; Viral load; Transposable element; Virology; Genetics; Chromatin; Virus; Genome; Gene; Gene expression","authors":[{"name":"Xun Chen","is_ca":false},{"name":"Alain Pacis","is_ca":true},{"name":"Katherine A Aracena","is_ca":false},{"name":"Saideep Gona","is_ca":false},{"name":"Tony Kwan","is_ca":true},{"name":"Cristian Groza","is_ca":true},{"name":"Yen‐Lung Lin","is_ca":false},{"name":"Renata Sindeaux","is_ca":true},{"name":"Vania Yotova","is_ca":true},{"name":"Albéna Pramatarova","is_ca":true},{"name":"Marie-Michelle Simon","is_ca":true},{"name":"Tomi Pastinen","is_ca":true},{"name":"Luis B. Barreiro","is_ca":false},{"name":"Guillaume Bourque","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01362675831128121,"gpt":0.2384521285454123,"spread":0.224825370234131,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001642332,0.0001271999,0.0001853927,0.0003833201,0.0001124609,0.000183443,0.0001124134,0.0002227988,0.000886989],"category_scores_gemma":[0.0004612197,0.00009092517,0.0001554019,0.0003273221,0.0001740202,0.00008386158,0.0001915628,0.0002305757,0.0001365634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008894775,"about_ca_system_score_gemma":0.00005849184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005332939,"about_ca_topic_score_gemma":0.0007590045,"domain_scores_codex":[0.9998127,0.00003113311,0.00001550079,0.00007064584,0.00003442721,0.00003568295],"domain_scores_gemma":[0.9996312,0.00008058178,0.0001770644,0.00003057449,0.00003030561,0.00005031938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007296035,0.00003197615,0.2279868,0.00006656475,0.0001203845,0.0003799121,0.0002438388,0.0001944432,0.7618234,0.0001317974,0.0001096697,0.008181562],"study_design_scores_gemma":[0.000004549333,0.0001310696,0.9781415,0.000005235151,0.0000355919,0.001267989,0.0001035142,0.0004517318,0.01927625,0.0001494694,0.0004245045,0.000008435044],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988378,0.0002652398,0.0005496591,0.00001386847,0.000002116845,0.000003187364,0.0001831117,0.000009455609,0.0001355931],"genre_scores_gemma":[0.9993227,0.0000696257,0.0002578972,0.00001259733,0.000003055658,0.000003042852,0.0001528736,0.000004119633,0.0001741666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000886989,"threshold_uncertainty_score":0.002967238,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4381189914","doi":"10.1016/j.xgen.2023.100345","title":"Multi-ancestry meta-analysis identifies 5 novel loci for ischemic stroke and reveals heterogeneity of effects between sexes and ancestries","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Faculté de médecine et des sciences de la santé, Université de Sherbrooke; Fakultet for medisin og helsevitenskap, Norges Teknisk-Naturvitenskapelige Universitet; Medical School, University of Michigan; Norwegian Institute of Public Health; National Institutes of Health; Taiwan Biobank; Norges Forskningsråd; St. Olavs Hospital Universitetssykehuset i Trondheim; Helse Midt-Norge; School of Public Health, University of Michigan; Stiftelsen Kristian Gerhard Jebsen; Norges Teknisk-Naturvitenskapelige Universitet; Biomet; QIMR Berghofer Medical Research Institute; Faculty of Medicine and Health, University of Sydney; University of California, Los Angeles; University of Michigan","keywords":"Biobank; Genome-wide association study; Stroke (engine); Locus (genetics); Genetic heterogeneity; Genetics; Meta-analysis; Biology; Genetic association; Ischemic stroke; Medicine; Genotype; Bioinformatics; Internal medicine; Single-nucleotide polymorphism; Gene; Ischemia","authors":[{"name":"Ida Surakka","is_ca":false},{"name":"Kuan-Han Wu","is_ca":false},{"name":"Whitney Hornsby","is_ca":false},{"name":"Brooke N. Wolford","is_ca":false},{"name":"Fred Shen","is_ca":false},{"name":"Wei Zhou","is_ca":false},{"name":"Jennifer E. Huffman","is_ca":false},{"name":"Anita Pandit","is_ca":false},{"name":"Yao Hu","is_ca":false},{"name":"Ben Brumpton","is_ca":false},{"name":"Anne Heidi Skogholt","is_ca":false},{"name":"Maiken E. Gabrielsen","is_ca":false},{"name":"Robin Walters","is_ca":false},{"name":"Kristian Hveem","is_ca":false},{"name":"Charles Kooperberg","is_ca":false},{"name":"Sebastian Zöllner","is_ca":false},{"name":"Peter W.F. Wilson","is_ca":false},{"name":"Nadia R. Sutton","is_ca":false},{"name":"Mark J. Daly","is_ca":false},{"name":"Benjamin M. Neale","is_ca":false},{"name":"Cristen J. Willer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07122488923414759,"gpt":0.3282400453371729,"spread":0.2570151561030253,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009081038,0.001905638,0.003979139,0.00305562,0.001010356,0.002684429,0.001248696,0.001316384,0.002259772],"category_scores_gemma":[0.01394126,0.0008750933,0.0173739,0.00426374,0.0005612923,0.0007777149,0.001521651,0.001454973,0.0002624697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000590952,"about_ca_system_score_gemma":0.0007825851,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005286088,"about_ca_topic_score_gemma":0.008506576,"domain_scores_codex":[0.9934662,0.003360806,0.0006568317,0.001592943,0.000503376,0.0004198626],"domain_scores_gemma":[0.9904952,0.005753177,0.0009142555,0.002179023,0.0003654928,0.0002928608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.006249225,0.00005823058,0.4189088,0.002393358,0.5464011,0.0008071088,0.0001634401,0.002536456,0.003656589,0.0004585469,0.001665288,0.01670173],"study_design_scores_gemma":[0.0009142616,0.0006061271,0.3758032,0.000503777,0.6103469,0.0008653405,0.0001921462,0.004061023,0.001496067,0.001881746,0.003271111,0.00005826208],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7994144,0.1708699,0.01760528,0.00199213,0.0004578679,0.0001233255,0.00662806,0.0005646528,0.002344292],"genre_scores_gemma":[0.9869794,0.007898312,0.002678906,0.0003240621,0.00009957851,0.0000685116,0.001567918,0.00007867548,0.0003047698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009081038,"threshold_uncertainty_score":0.04802567,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4390116519","doi":"10.1016/j.xgen.2023.100468","title":"Genome-wide study investigating effector genes and polygenic prediction for kidney function in persons with ancestry from Africa and the Americas","year":2023,"lang":"en","type":"review","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Population Health Research Institute","funders":"NHLBI Division of Intramural Research; Division of Cancer Epidemiology and Genetics, National Cancer Institute; National Center for Advancing Translational Sciences; National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; Kidney Research UK; National Human Genome Research Institute; National Heart and Lung Institute; Ministério da Saúde; Kaiser Foundation Research Institute; National Heart, Lung, and Blood Institute; National Institutes of Health; Fogarty International Center; Canadian Institutes of Health Research; Manchester Biomedical Research Centre; National Institute for Health and Care Research; National Eye Institute; San Diego State University; Fundación IMSS; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; University of North Carolina at Chapel Hill; Instituto Mexicano del Seguro Social; University of Minnesota; Financiadora de Estudos e Projetos; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Toronto; Government of Ontario; Society for the Study of Addiction; Hankuk University of Foreign Studies; University of Manchester; National Institute of Neurological Disorders and Stroke; British Heart Foundation; Diabetes Research Connection; National Cancer Institute; Mississippi State Department of Health; Indiana Clinical and Translational Sciences Institute; National Institute of Dental and Craniofacial Research; Andrea and Charles Bronfman Philanthropies; Howard University; Ontario Research Foundation; University of Washington; University of Miami; Northwestern University; National Institute on Minority Health and Health Disparities; Jackson State University; National Center on Minority Health and Health Disparities; National Institute of Mental Health; University of Alabama at Birmingham; Office of Dietary Supplements; Office of the Director; U.S. Department of Health and Human Services","keywords":"Genome-wide association study; Biology; Genetic association; Genetics; Kidney disease; Population; Genome; Disease; Genomics; Computational biology; Gene; 1000 Genomes Project; Evolutionary biology; Genotype; Medicine; Single-nucleotide polymorphism; Internal medicine","authors":[{"name":"Odessica Hughes","is_ca":false},{"name":"Amy R. Bentley","is_ca":false},{"name":"Charles E. Breeze","is_ca":false},{"name":"François Aguet","is_ca":false},{"name":"Xiaoguang Xu","is_ca":false},{"name":"Girish N. Nadkarni","is_ca":false},{"name":"Quan Sun","is_ca":false},{"name":"Bridget M. Lin","is_ca":false},{"name":"Thomas Gilliland","is_ca":false},{"name":"Mariah Meyer","is_ca":false},{"name":"Jiawen Du","is_ca":false},{"name":"Laura M. Raffield","is_ca":false},{"name":"Holly Kramer","is_ca":false},{"name":"Robert W. Morton","is_ca":true},{"name":"Mateus H. Gouveia","is_ca":false},{"name":"Elizabeth G. Atkinson","is_ca":false},{"name":"Adán Valladares‐Salgado","is_ca":false},{"name":"Niels Wacher-Rodarte","is_ca":false},{"name":"Nicole Dueker","is_ca":false},{"name":"Xiuqing Guo","is_ca":false},{"name":"Yang Hai","is_ca":false},{"name":"Adebowale Adeyemo","is_ca":false},{"name":"Lyle G. Best","is_ca":false},{"name":"Jianwen Cai","is_ca":false},{"name":"Guanjie Chen","is_ca":false},{"name":"Michael Chong","is_ca":true},{"name":"Ayo P. Doumatey","is_ca":false},{"name":"James Eales","is_ca":false},{"name":"Mark O. Goodarzi","is_ca":false},{"name":"Eli Ipp","is_ca":false},{"name":"Marguerite R. Irvin","is_ca":false},{"name":"Min-Zhi Jiang","is_ca":false},{"name":"Alana Jones","is_ca":false},{"name":"Charles Kooperberg","is_ca":false},{"name":"José Eduardo Krieger","is_ca":false},{"name":"Ethan M. Lange","is_ca":false},{"name":"Matthew B. Lanktree","is_ca":true},{"name":"James P. Lash","is_ca":false},{"name":"Paulo A. Lotufo","is_ca":false},{"name":"Ruth J. F. Loos","is_ca":false},{"name":"Ha My T. Vy","is_ca":false},{"name":"Jesús Peralta‐Romero","is_ca":false},{"name":"Lihong Qi","is_ca":false},{"name":"Leslie J. Raffel","is_ca":false},{"name":"Stephen S. Rich","is_ca":false},{"name":"Erik J. Rodriquez","is_ca":false},{"name":"Eduardo Tarazona‐Santos","is_ca":false},{"name":"Kent D. Taylor","is_ca":false},{"name":"Jason G. Umans","is_ca":false},{"name":"Jia Wen","is_ca":false},{"name":"Bessie A. Young","is_ca":false},{"name":"Zhi Yu","is_ca":false},{"name":"Ying Zhang","is_ca":false},{"name":"Yii‐Der Ida Chen","is_ca":false},{"name":"Jerome I. Rotter","is_ca":false},{"name":"Miguel Cruz","is_ca":false},{"name":"Myriam Fornage","is_ca":false},{"name":"Maria Fernanda Lima‐Costa","is_ca":false},{"name":"Alexandre C. Pereira","is_ca":false},{"name":"Guillaume Paré","is_ca":true},{"name":"Pradeep Natarajan","is_ca":false},{"name":"Shelley A. Cole","is_ca":false},{"name":"April P. Carson","is_ca":false},{"name":"Leslie A. Lange","is_ca":false},{"name":"Yun Li","is_ca":false},{"name":"Eliseo J. Pérez‐Stable","is_ca":false},{"name":"Ron Do","is_ca":false},{"name":"Fadi J. Charchar","is_ca":false},{"name":"Maciej Tomaszewski","is_ca":false},{"name":"Josyf C. Mychaleckyj","is_ca":false},{"name":"Charles N. Rotimi","is_ca":false},{"name":"Andrew P. Morris","is_ca":false},{"name":"Nora Franceschini","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04319828742506249,"gpt":0.280635327074432,"spread":0.2374370396493695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002233313,0.000954764,0.002315481,0.001821931,0.0001726937,0.0009069424,0.001112738,0.001322513,0.001954642],"category_scores_gemma":[0.003292793,0.0003067913,0.001019739,0.001973908,0.0005023319,0.0007142836,0.0007091177,0.00178735,0.0009263963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007961866,"about_ca_system_score_gemma":0.001659362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002000332,"about_ca_topic_score_gemma":0.003092716,"domain_scores_codex":[0.9996138,0.0001275014,0.0000607309,0.0000938785,0.00007791528,0.00002618054],"domain_scores_gemma":[0.997937,0.001465163,0.0001475053,0.00004274654,0.0003041297,0.0001035958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0003309825,0.00004431261,0.002166507,0.01877605,0.001475183,0.0001988918,0.0000474839,0.0004054164,0.0004618181,0.00392703,0.02776214,0.9444042],"study_design_scores_gemma":[0.0002082492,0.0003944171,0.01867107,0.02109192,0.004010176,0.00261249,0.0001292462,0.0004644982,0.0006273851,0.009368127,0.9423212,0.0001012124],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.000105824,0.9988787,0.000122824,0.0004936886,0.0001290326,0.000002783998,0.00003408517,0.00000468606,0.0002285474],"genre_scores_gemma":[0.001056532,0.9979289,0.0001928028,0.0004003035,0.0001843679,0.000007730234,0.0000601457,0.00000212798,0.0001670569],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002315481,"threshold_uncertainty_score":0.01181102,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410301909","doi":"10.1016/j.xgen.2025.100872","title":"Nanopore direct RNA sequencing of human transcriptomes reveals the complexity of mRNA modifications and crosstalk between regulatory features","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Terry Fox Research Institute; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; Terry Fox Research Institute; Michael Smith Health Research BC; Canada Research Chairs; Natural Sciences and Engineering Research Council of Canada; Japan Agency for Medical Research and Development; American Society of Hematology; V Foundation for Cancer Research","keywords":"Crosstalk; Nanopore; Computational biology; RNA; Nanopore sequencing; Transcriptome; Biology; Messenger RNA; Gene; Genetics; Cell biology; Gene expression; Genome; Nanotechnology; Materials science; Engineering; Electronic engineering","authors":[{"name":"Yerin Kim","is_ca":true},{"name":"Luke Saville","is_ca":true},{"name":"Kieran O’Neill","is_ca":true},{"name":"Jean‐Michel Garant","is_ca":true},{"name":"Yilin Liu","is_ca":true},{"name":"Simon Haile-Merhu","is_ca":true},{"name":"Maryam Ghashghaei","is_ca":true},{"name":"Amber Louwagie","is_ca":true},{"name":"Yongjin Park","is_ca":true},{"name":"Steven J.M. Jones","is_ca":true},{"name":"Ly Vu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03293050099497127,"gpt":0.2756059096802415,"spread":0.2426754086852702,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000281844,0.000210519,0.000282139,0.0003144871,0.0002054662,0.0004178691,0.0001374696,0.0002939443,0.0008359756],"category_scores_gemma":[0.0004379986,0.0001427764,0.0002025653,0.0002576667,0.0002009463,0.0002228252,0.0002963332,0.0003324886,0.0003969046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000174867,"about_ca_system_score_gemma":0.0001660464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005519626,"about_ca_topic_score_gemma":0.001857603,"domain_scores_codex":[0.9997045,0.00004070578,0.00001563295,0.0001336975,0.00007821069,0.00002723823],"domain_scores_gemma":[0.999728,0.0001271386,0.00005206388,0.00002952947,0.00004226543,0.00002085651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006682994,0.000009178209,0.003184748,0.00006895582,0.00001941247,0.00003183721,0.00003675841,0.0003249264,0.9890287,0.0001015712,0.00009634531,0.007030694],"study_design_scores_gemma":[0.0000090144,0.000241333,0.09570728,0.00003075523,0.00008351564,0.0005468329,0.000174105,0.01004558,0.8842186,0.0009533062,0.007956786,0.00003289977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9196185,0.003458996,0.06713232,0.0002898523,0.00004866983,0.00005074776,0.006160016,0.000536567,0.002704284],"genre_scores_gemma":[0.9380694,0.001897636,0.05040627,0.0004289278,0.00003421901,0.00008682277,0.006463696,0.0001101647,0.00250278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008359756,"threshold_uncertainty_score":0.00279665,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4386143227","doi":"10.1016/j.xgen.2023.100386","title":"Equity, diversity, and inclusion at the Global Alliance for Genomics and Health","year":2023,"lang":"en","type":"review","venue":"Cell Genomics","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Genome Canada; Ontario Genomics; Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute; Australian Research Council; Medical Research Council; Canadian Institutes of Health Research; Ontario Institute for Cancer Research; National Institutes of Health; National Health and Medical Research Council; Broad Institute","keywords":"Alliance; Equity (law); Diversity (politics); Genomics; Workforce; Health equity; Public relations; Inclusion (mineral); Political science; Business; Biology; Health care; Sociology; Genetics; Social science; Law; Genome","authors":[{"name":"Neerjah Skantharajah","is_ca":true},{"name":"Shakuntala Baichoo","is_ca":false},{"name":"Tiffany Boughtwood","is_ca":false},{"name":"Esmeralda Casas-Silva","is_ca":false},{"name":"Subhashini Chandrasekharan","is_ca":false},{"name":"Sanjay Dave","is_ca":false},{"name":"Khalid A. Fakhro","is_ca":false},{"name":"Aida B. Falcon de Vargas","is_ca":false},{"name":"Sylvia S. Gayle","is_ca":false},{"name":"Vivek Gupta","is_ca":false},{"name":"Rachele Hendricks‐Sturrup","is_ca":false},{"name":"Ashley E. Hobb","is_ca":false},{"name":"Stephanie Li","is_ca":true},{"name":"Bastien Llamas","is_ca":false},{"name":"Catalina López-Correa","is_ca":true},{"name":"Mavis Machirori","is_ca":false},{"name":"Jorge Meléndez-Zajgla","is_ca":false},{"name":"Mareike Annemarie Millner","is_ca":false},{"name":"Angela Page","is_ca":true},{"name":"Laura Paglione","is_ca":false},{"name":"Maili Raven-Adams","is_ca":true},{"name":"Lindsay Smith","is_ca":true},{"name":"Ericka M. Thomas","is_ca":false},{"name":"Judit Kumuthini","is_ca":false},{"name":"Manuel Corpas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.7448286733669337,"gpt":0.6216963498481528,"spread":0.1231323235187809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.02275262,0.0005672665,0.001056227,0.00290533,0.001639299,0.005095497,0.001216179,0.004661856,0.003601922],"category_scores_gemma":[0.01749429,0.0003285485,0.0007619939,0.002889783,0.004479462,0.005544848,0.005523319,0.008625124,0.0009969652],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004827723,"about_ca_system_score_gemma":0.02592837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003598057,"about_ca_topic_score_gemma":0.005964401,"domain_scores_codex":[0.9880043,0.006489384,0.0007449196,0.0005255711,0.003526743,0.0007090318],"domain_scores_gemma":[0.9810551,0.01148269,0.001468334,0.0006373438,0.003746926,0.00160965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003190032,0.0000595935,0.0005756168,0.01083951,0.0001005788,0.0001826321,0.002127819,0.0002099769,0.0005052314,0.2851565,0.1389862,0.5612244],"study_design_scores_gemma":[0.000005526574,0.0000214659,0.0006689228,0.01325333,0.00003082893,0.0002531793,0.0007271958,0.00002934754,0.0001651033,0.01798282,0.9668472,0.0000151357],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000449268,0.8674453,0.001653467,0.1116021,0.003736536,0.00006577692,0.00003883497,0.0000268127,0.01498199],"genre_scores_gemma":[0.01671316,0.9223279,0.006037849,0.04697378,0.002277569,0.0001637158,0.0001145148,0.00003166097,0.005359854],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9987838,"threshold_uncertainty_score":0.1203288,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4391563531","doi":"10.1016/j.xgen.2024.100500","title":"The Mutographs biorepository: A unique genomic resource to study cancer around the world","year":2024,"lang":"en","type":"review","venue":"Cell Genomics","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University Health Network; McGill University; Ontario Institute for Cancer Research","funders":"Division of Cancer Epidemiology and Genetics, National Cancer Institute; National Cancer Institute; Horizon 2020; World Cancer Research Fund; International Arctic Research Center, University of Alaska, Fairbanks; Hospital de Clínicas de Porto Alegre; Cancer Research UK; Ministerstvo Zdravotnictví Ceské Republiky; Wereld Kanker Onderzoek Fonds; Fundação de Amparo à Pesquisa do Estado de São Paulo; World Health Organization; European Commission; World Cancer Research Fund International; National Institutes of Health; HORIZON EUROPE Framework Programme; Wellcome Trust; Centre International de Recherche sur le Cancer","keywords":"Biorepository; Cancer; Genomics; Metadata; Biobank; Resource (disambiguation); Data science; Medicine; Genome; Bioinformatics; Biology; Computer science; World Wide Web; Internal medicine; Genetics","authors":[{"name":"Sandra Pérdomo","is_ca":false},{"name":"Behnoush Abedi‐Ardekani","is_ca":false},{"name":"Ana Carolina de Carvalho","is_ca":false},{"name":"Aida Ferreiro-Iglesias","is_ca":false},{"name":"Valérie Gaborieau","is_ca":false},{"name":"Thomas Cattiaux","is_ca":false},{"name":"Hélène Renard","is_ca":false},{"name":"Priscilia Chopard","is_ca":false},{"name":"Christine Carreira","is_ca":false},{"name":"Andreea Spanu","is_ca":false},{"name":"Arash Nikmanesh","is_ca":false},{"name":"Ricardo Cortez Cardoso Penha","is_ca":false},{"name":"Samuel O. Antwi","is_ca":false},{"name":"Patrícia Ashton‐Prolla","is_ca":false},{"name":"Cristina Canova","is_ca":false},{"name":"Taned Chitapanarux","is_ca":false},{"name":"Riley Cox","is_ca":true},{"name":"María Paula Curado","is_ca":false},{"name":"José Carlos de Oliveira","is_ca":false},{"name":"Charles P. Dzamalala","is_ca":false},{"name":"Elenora Fabianova","is_ca":false},{"name":"Lorenzo Ferri","is_ca":true},{"name":"Rebecca C. Fitzgerald","is_ca":false},{"name":"Lenka Foretová","is_ca":false},{"name":"Steven Gallinger","is_ca":true},{"name":"Alisa M. Goldstein","is_ca":false},{"name":"Ivana Holcátová","is_ca":false},{"name":"Vladimí­r Janout","is_ca":false},{"name":"Sonata Jarmalaite","is_ca":false},{"name":"Radka Kaneva","is_ca":false},{"name":"Luiz Paulo Kowalski","is_ca":false},{"name":"Tomislav Kuliš","is_ca":false},{"name":"Παγώνα Λάγιου","is_ca":false},{"name":"Jolanta Lissowska","is_ca":false},{"name":"Reza Malekzadeh","is_ca":false},{"name":"Dana Mateș","is_ca":false},{"name":"Valerie McCorrmack","is_ca":false},{"name":"Diana Menya","is_ca":false},{"name":"Sharayu Mhatre","is_ca":false},{"name":"Blandina T. Mmbaga","is_ca":false},{"name":"André de Moricz","is_ca":false},{"name":"Péter Nyírády","is_ca":false},{"name":"Miodrag Ognjanovic","is_ca":false},{"name":"Kyriaki Papadopoulou","is_ca":false},{"name":"Jerry Polesel","is_ca":false},{"name":"Mark P. Purdue","is_ca":false},{"name":"Ștefan Rașcu","is_ca":false},{"name":"Lidia Maria Rebolho Batista","is_ca":false},{"name":"Rui Manuel Reis","is_ca":false},{"name":"Luís Felipe Ribeiro Pinto","is_ca":false},{"name":"Paula A. Rodríguez‐Urrego","is_ca":false},{"name":"Surasak Sangkhathat","is_ca":false},{"name":"Suleeporn Sangrajrang","is_ca":false},{"name":"Tatsuhiro Shibata","is_ca":false},{"name":"E. O. Stakhovsky","is_ca":false},{"name":"Beata Świątkowska","is_ca":false},{"name":"Carlos Vaccaro","is_ca":false},{"name":"José Roberto Vasconcelos de Podestá","is_ca":false},{"name":"Naveen Vasudev","is_ca":false},{"name":"Marta Vilensky","is_ca":false},{"name":"Jonathan Yeung","is_ca":true},{"name":"Давид Заридзе","is_ca":false},{"name":"Kazem Zendehdel","is_ca":false},{"name":"Ghislaine Scélo","is_ca":false},{"name":"Estelle Chanudet","is_ca":false},{"name":"Jingwei Wang","is_ca":false},{"name":"Stephen Fitzgerald","is_ca":false},{"name":"Calli Latimer","is_ca":false},{"name":"Sarah Moody","is_ca":false},{"name":"Laura Humphreys","is_ca":false},{"name":"Ludmil B. Alexandrov","is_ca":false},{"name":"Michael R. Stratton","is_ca":false},{"name":"Paul Brennan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01883470763824164,"gpt":0.3008757065956982,"spread":0.2820409989574565,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002892755,0.0007330358,0.001200355,0.004367442,0.0003677121,0.001542113,0.001527773,0.001097017,0.01940292],"category_scores_gemma":[0.003970919,0.0002377771,0.0006539879,0.005946442,0.0004395611,0.001419692,0.002118975,0.001583204,0.00886889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007777198,"about_ca_system_score_gemma":0.005123182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004213016,"about_ca_topic_score_gemma":0.008280729,"domain_scores_codex":[0.9993485,0.0002446339,0.00005952574,0.00007545844,0.0002161138,0.00005577477],"domain_scores_gemma":[0.9972284,0.00122358,0.0002268379,0.0002231055,0.0006184994,0.0004795395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008860154,0.00003838981,0.0006371164,0.007432512,0.0001175431,0.0001487483,0.0001590282,0.0002054475,0.001021441,0.007916232,0.2364992,0.7457357],"study_design_scores_gemma":[0.0000116972,0.00001358414,0.0006640169,0.001287888,0.00003374133,0.0001465148,0.00003723565,0.00001659061,0.0001347594,0.0009156716,0.9967307,0.000007664265],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001181058,0.9291396,0.00619105,0.009141938,0.00201729,0.0003123611,0.02331025,0.0009138956,0.02779259],"genre_scores_gemma":[0.006319508,0.9330384,0.0104182,0.004472674,0.001140549,0.0004321593,0.03457766,0.0002220024,0.009378968],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01940292,"threshold_uncertainty_score":0.06490922,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4392302540","doi":"10.1016/j.xgen.2024.100511","title":"Genomic evolution shapes prostate cancer disease type","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Cancer Research UK Cambridge Institute, University of Cambridge; NIHR Cambridge Biomedical Research Centre; Canadian Institutes of Health Research; Syöpäjärjestöt; National Institutes of Health; H2020 Marie Skłodowska-Curie Actions; Masonic Charitable Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Prostate Cancer Canada; Prostate Cancer UK; National Institute for Health and Care Research; Sigrid Juséliuksen Säätiö; National Cancer Research Institute; Royal Marsden NHS Foundation Trust; National Health and Medical Research Council; University of St Andrews; Horizon 2020 Framework Programme; Academy of Finland; University of Cambridge; Wellcome Trust; Cancer Research UK; Hutchison Whampoa Limited; Ontario Institute for Cancer Research; Francis Crick Institute; Medical Research Council; Cancer Prevention and Research Institute of Texas","keywords":"Prostate cancer; Cancer; Biology; Disease; Computational biology; Prostate; Somatic evolution in cancer; Androgen receptor; Chromoplexy; Evolutionary biology; Cancer research; Genetics; Medicine; Internal medicine; PCA3","authors":[{"name":"Dan J. Woodcock","is_ca":false},{"name":"Atef Sahli","is_ca":false},{"name":"Ruxandra Teslo","is_ca":false},{"name":"Vinayak Bhandari","is_ca":true},{"name":"Andreas Gruber","is_ca":false},{"name":"Aleksandra Ziubroniewicz","is_ca":false},{"name":"Gunes Gundem","is_ca":false},{"name":"Yaobo Xu","is_ca":false},{"name":"Adam P. Butler","is_ca":false},{"name":"Ezequiel Anokian","is_ca":false},{"name":"Bernard J. Pope","is_ca":false},{"name":"Chol‐Hee Jung","is_ca":false},{"name":"Maxime Tarabichi","is_ca":false},{"name":"Stefan C. Dentro","is_ca":false},{"name":"James Henry Royston Farmery","is_ca":false},{"name":"Peter Van Loo","is_ca":false},{"name":"Anne Y. Warren","is_ca":false},{"name":"Vincent J. Gnanapragasam","is_ca":false},{"name":"Freddie C. Hamdy","is_ca":false},{"name":"G. Steven Bova","is_ca":false},{"name":"Christopher S. Foster","is_ca":false},{"name":"David E. Neal","is_ca":false},{"name":"Yong‐Jie Lu","is_ca":false},{"name":"Zsofia Kote‐Jarai","is_ca":false},{"name":"Michael Fraser","is_ca":true},{"name":"Robert G. Bristow","is_ca":true},{"name":"Paul C. Boutros","is_ca":true},{"name":"Anthony J. Costello","is_ca":false},{"name":"Niall M. Corcoran","is_ca":false},{"name":"Christopher M. Hovens","is_ca":false},{"name":"Charlie E. Massie","is_ca":false},{"name":"Andy G. Lynch","is_ca":false},{"name":"Daniel S. Brewer","is_ca":false},{"name":"Rosalind A. Eeles","is_ca":false},{"name":"Colin S. Cooper","is_ca":false},{"name":"David C. Wedge","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02068688260702288,"gpt":0.3005653964888934,"spread":0.2798785138818705,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003654769,0.0001300715,0.0002965641,0.0009985066,0.0002560521,0.000948813,0.0002552073,0.0004262985,0.001870165],"category_scores_gemma":[0.001243369,0.0001219579,0.0002640303,0.0007603184,0.0003631834,0.0002675351,0.0003380998,0.0004599673,0.0003008342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003351481,"about_ca_system_score_gemma":0.0002730195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001320021,"about_ca_topic_score_gemma":0.002035049,"domain_scores_codex":[0.9997126,0.00006886471,0.000009960518,0.000112071,0.00005056835,0.00004587549],"domain_scores_gemma":[0.9993829,0.0001741677,0.0002048052,0.00006440977,0.00008974381,0.00008401692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007477432,0.00006569819,0.8141245,0.0000817741,0.000259768,0.0004473507,0.00055027,0.006207984,0.12001,0.005925417,0.0006443193,0.05093518],"study_design_scores_gemma":[0.00001193984,0.0001658081,0.9670534,0.00001598836,0.0001005269,0.001639837,0.0004142112,0.01320494,0.007764632,0.005005307,0.004589028,0.00003444631],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99321,0.0007540865,0.003433928,0.000124725,0.000009844468,0.00001010195,0.0003845371,0.00003962749,0.002033191],"genre_scores_gemma":[0.998323,0.0002170403,0.0007949735,0.00004707601,0.000007661019,0.000003949324,0.0002354398,0.00001897915,0.0003519571],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001870165,"threshold_uncertainty_score":0.006256282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4366694476","doi":"10.1016/j.xgen.2023.100304","title":"Systematic elucidation of genetic mechanisms underlying cholesterol uptake","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cholesterol and Lipid Metabolism","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"National Human Genome Research Institute; National Heart, Lung, and Blood Institute; Qatar Biomedical Research Institute, Hamad Bin Khalifa University; National Organization for Rare Disorders; National Institutes of Health; National University of Singapore; National Institute of General Medical Sciences; American Heart Association; American Cancer Society","keywords":"Computational biology; Biology; Evolutionary biology; Genetics","authors":[{"name":"Marisa C. Hamilton","is_ca":false},{"name":"James D. Fife","is_ca":false},{"name":"Ersin Akıncı","is_ca":false},{"name":"Tian Yu","is_ca":false},{"name":"Benyapa Khowpinitchai","is_ca":false},{"name":"Minsun Cha","is_ca":false},{"name":"Sammy Barkal","is_ca":false},{"name":"Thi Tun Thi","is_ca":false},{"name":"Grace H.T. Yeo","is_ca":false},{"name":"Juan Pablo Ramos Barroso","is_ca":false},{"name":"Matthew Francoeur","is_ca":false},{"name":"Minja Velimirovic","is_ca":false},{"name":"David K. Gifford","is_ca":false},{"name":"Guillaume Lettre","is_ca":true},{"name":"Haojie Yu","is_ca":false},{"name":"Christopher A. Cassa","is_ca":false},{"name":"Richard I. Sherwood","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03256221503113672,"gpt":0.2630670830625247,"spread":0.230504868031388,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004653552,0.0004372759,0.0004422994,0.0007960921,0.0002983379,0.0005095219,0.0003970948,0.0006126501,0.001849922],"category_scores_gemma":[0.0003779937,0.0002072703,0.0004210062,0.0005124112,0.000668509,0.0002814136,0.0008151932,0.0007870638,0.0004986131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004754342,"about_ca_system_score_gemma":0.000714548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001396593,"about_ca_topic_score_gemma":0.002612986,"domain_scores_codex":[0.9997228,0.00004980129,0.00003447615,0.00009058862,0.0000663124,0.00003609196],"domain_scores_gemma":[0.9995689,0.0001403407,0.0001271577,0.00008414347,0.00003672035,0.00004283744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000123527,0.00002294769,0.001686275,0.0001179109,0.00002877929,0.0002603355,0.00004433047,0.0002793735,0.9872416,0.001835966,0.0001069134,0.008251981],"study_design_scores_gemma":[0.00006449004,0.0005528149,0.05598851,0.0001042194,0.0002745914,0.003473287,0.0001754445,0.005318958,0.8965871,0.002678558,0.03472108,0.00006098899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8963725,0.006790926,0.08389383,0.0009769336,0.0001267051,0.0002174031,0.005060125,0.0004468965,0.006114673],"genre_scores_gemma":[0.9432535,0.006416885,0.04015216,0.0004445128,0.00003865003,0.000123091,0.003653666,0.0001707474,0.005746762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001849922,"threshold_uncertainty_score":0.006188571,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410559691","doi":"10.1016/j.xgen.2025.100879","title":"Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont; University of Toronto","funders":"National Institute of Mental Health; European Research Council; National Institutes of Health; Vlaamse regering; Zhejiang University; National Human Genome Research Institute; Allen Institute; Fonds Wetenschappelijk Onderzoek; Chan Zuckerberg Initiative","keywords":"Enhancer; Type (biology); Computational biology; Biology; Biological system; Computer science; Neuroscience; Genetics; Transcription factor; Gene; Ecology","authors":[{"name":"Nelson Johansen","is_ca":false},{"name":"Niklas Kempynck","is_ca":false},{"name":"Nathan R. Zemke","is_ca":false},{"name":"Saroja Somasundaram","is_ca":false},{"name":"Seppe De Winter","is_ca":false},{"name":"Marcus Hooper","is_ca":false},{"name":"Deepanjali Dwivedi","is_ca":false},{"name":"Ruchi Lohia","is_ca":true},{"name":"Fabien Wehbe","is_ca":true},{"name":"Bocheng Li","is_ca":false},{"name":"Darina Abaffyová","is_ca":false},{"name":"Ethan J. Armand","is_ca":false},{"name":"Julie De Man","is_ca":false},{"name":"Eren Can Ekşi","is_ca":false},{"name":"Nikolai Hecker","is_ca":false},{"name":"Gert Hulselmans","is_ca":false},{"name":"Vasileios Konstantakos","is_ca":false},{"name":"David Mauduit","is_ca":false},{"name":"John K. Mich","is_ca":false},{"name":"Gabriele Partel","is_ca":false},{"name":"Tanya L. Daigle","is_ca":false},{"name":"Boaz P. Levi","is_ca":false},{"name":"Kai Zhang","is_ca":false},{"name":"Yoshiaki Tanaka","is_ca":true},{"name":"Jesse Gillis","is_ca":true},{"name":"Jonathan T. Ting","is_ca":false},{"name":"Yoav Ben‐Simon","is_ca":false},{"name":"Jeremy A. Miller","is_ca":false},{"name":"Joseph R. Ecker","is_ca":false},{"name":"Bing Ren","is_ca":false},{"name":"Stein Aerts","is_ca":false},{"name":"Ed S. Lein","is_ca":false},{"name":"Bosiljka Tasic","is_ca":false},{"name":"Trygve E. Bakken","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04703778718429366,"gpt":0.3395617580012578,"spread":0.2925239708169641,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004249419,0.0007917525,0.0006802616,0.001223439,0.0003025234,0.0008666525,0.0007337074,0.0007942867,0.0006945014],"category_scores_gemma":[0.007914585,0.0002530203,0.0006657607,0.0005705011,0.0004473734,0.000623118,0.0006736709,0.0008432384,0.0002497044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00078242,"about_ca_system_score_gemma":0.0009586351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003496226,"about_ca_topic_score_gemma":0.005895312,"domain_scores_codex":[0.9990302,0.0004627947,0.00004821778,0.000238049,0.000171304,0.00004944774],"domain_scores_gemma":[0.9919036,0.007058727,0.0002834777,0.000249705,0.0003998324,0.0001047319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005916621,0.0002192871,0.03228464,0.0003015785,0.0002794253,0.00009063262,0.00006045674,0.8143915,0.02054228,0.002593664,0.001970313,0.1266746],"study_design_scores_gemma":[0.00003026572,0.00009036831,0.002387243,0.0000126251,0.00002094611,0.0000333994,0.00002085514,0.9883648,0.005471135,0.003103144,0.0004574231,0.00000776811],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6081321,0.003177532,0.3802805,0.0008530755,0.00005202124,0.0001160017,0.002583876,0.002864963,0.001939999],"genre_scores_gemma":[0.7814211,0.0006229944,0.2110486,0.0002928071,0.00005290742,0.000137607,0.005149738,0.0003137771,0.0009606294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004249419,"threshold_uncertainty_score":0.02247339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4362696919","doi":"10.1016/j.xgen.2023.100294","title":"Genome graphs detect human polymorphisms in active epigenomic state during influenza infection","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Genome Canada; Canada Research Chairs; McGill University","keywords":"Epigenomics; Epigenome; Biology; Genetics; Epigenetics; Genome; Chromatin; Chromatin immunoprecipitation; Expression quantitative trait loci; International HapMap Project; Computational biology; Gene; Human genome; DNA methylation; Gene expression; Single-nucleotide polymorphism; Promoter; Genotype","authors":[{"name":"Cristian Groza","is_ca":true},{"name":"Xun Chen","is_ca":false},{"name":"Alain Pacis","is_ca":true},{"name":"Marie-Michelle Simon","is_ca":true},{"name":"Albéna Pramatarova","is_ca":true},{"name":"Katherine A Aracena","is_ca":false},{"name":"Tomi Pastinen","is_ca":false},{"name":"Luis B. Barreiro","is_ca":false},{"name":"Guillaume Bourque","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01797987208214317,"gpt":0.2580812433282336,"spread":0.2401013712460904,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001672096,0.0001601804,0.0001846005,0.0009266695,0.0001796811,0.0003613504,0.0001615441,0.0002483056,0.001381417],"category_scores_gemma":[0.001309755,0.0001350011,0.0002277211,0.0009423255,0.0001463847,0.0002990604,0.0002663046,0.0002051817,0.0001929841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002094617,"about_ca_system_score_gemma":0.0001205305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001900953,"about_ca_topic_score_gemma":0.002903239,"domain_scores_codex":[0.999863,0.00003052395,0.00000718254,0.00005864855,0.00002130586,0.00001934013],"domain_scores_gemma":[0.999306,0.0003507664,0.0001621872,0.00006916181,0.00006191247,0.00005008463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00185801,0.0001190381,0.5577064,0.0004645454,0.0006427758,0.0005870736,0.0008711473,0.02444583,0.3011173,0.005246441,0.004857415,0.102084],"study_design_scores_gemma":[0.00003513438,0.0002179165,0.8763853,0.00003880407,0.0002178035,0.001050351,0.0006020341,0.07030115,0.03186698,0.009665877,0.00955265,0.00006598895],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805188,0.0003548777,0.01250903,0.00008298009,0.00001221478,0.00001467629,0.005350087,0.0003209403,0.0008363263],"genre_scores_gemma":[0.9825027,0.0001696973,0.01069441,0.00004820747,0.0000101186,0.00002074006,0.00612317,0.0000692927,0.0003617354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001900953,"threshold_uncertainty_score":0.004621327,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404107291","doi":"10.1016/j.xgen.2024.100693","title":"Seed sequences mediate off-target activity in the CRISPR-interference system","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Roche (Canada)","funders":"Genentech","keywords":"CRISPR; Interference (communication); RNA interference; Computational biology; Biology; Chemistry; Cell biology; Computer science; Genetics; Telecommunications; RNA; Gene","authors":[{"name":"Neha Rohatgi","is_ca":true},{"name":"Jean‐Philippe Fortin","is_ca":false},{"name":"Ted Lau","is_ca":false},{"name":"Yi Ying","is_ca":false},{"name":"Yue Zhang","is_ca":false},{"name":"Bettina L. Lee","is_ca":false},{"name":"Michael R. Costa","is_ca":false},{"name":"Rohit Reja","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008048707273655628,"gpt":0.2594907858729802,"spread":0.2514420785993245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003837312,0.0004945773,0.0006096593,0.0002826378,0.0002067414,0.0006132085,0.000373679,0.0005320089,0.0009328563],"category_scores_gemma":[0.0006617908,0.0002749683,0.0003027184,0.0001338346,0.0003743008,0.000279404,0.0006316481,0.0006868817,0.0006969549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004077537,"about_ca_system_score_gemma":0.0002659522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003377944,"about_ca_topic_score_gemma":0.0004520874,"domain_scores_codex":[0.9992326,0.0001812317,0.00007159754,0.0001332439,0.0002798195,0.0001014834],"domain_scores_gemma":[0.9994337,0.0002292691,0.0001173214,0.00009522774,0.00006641808,0.00005809891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002197626,0.00001023492,0.000205599,0.00002272282,0.000003789048,0.00005114869,0.00000948795,0.00007748925,0.9984457,0.0001741723,0.00001665968,0.0009610504],"study_design_scores_gemma":[0.000003317905,0.00005722926,0.002126812,0.000004031274,0.000008468851,0.0002121526,0.00001249278,0.001525226,0.9949808,0.0001299355,0.0009344264,0.000005228615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9575151,0.0009581164,0.03522114,0.0000964138,0.00004742023,0.00005505314,0.0002319553,0.0003776517,0.005497251],"genre_scores_gemma":[0.9904664,0.0002880933,0.006916303,0.00008777337,0.000006413861,0.00002845698,0.0002895413,0.00005922589,0.001857818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009328563,"threshold_uncertainty_score":0.003120661,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4378233688","doi":"10.1016/j.xgen.2023.100330","title":"Systematic characterization of regulatory variants of blood pressure genes","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Ted Rogers Centre for Heart Research; University of Toronto; Hospital for Sick Children","funders":"Institute of Genetics; Hospital for Sick Children; Canadian Institutes of Health Research; Ontario Genomics; Fundació la Marató de TV3; Canada Research Chairs; Heart and Stroke Foundation of Canada","keywords":"Biology; Gene; Genetics; Computational biology; Genetic architecture; Genome-wide association study; Genetic association; Quantitative trait locus; CRISPR; Transcription factor; Genotype; Single-nucleotide polymorphism","authors":[{"name":"Winona Oliveros","is_ca":false},{"name":"Kate Delfosse","is_ca":true},{"name":"Daniella F. Lato","is_ca":true},{"name":"Katerina Kiriakopulos","is_ca":true},{"name":"Milad Mokhtaridoost","is_ca":true},{"name":"Abdelrahman Said","is_ca":true},{"name":"Brandon J. McMurray","is_ca":true},{"name":"Jared Browning","is_ca":true},{"name":"Kaia Mattioli","is_ca":false},{"name":"Guoliang Meng","is_ca":true},{"name":"James Ellis","is_ca":true},{"name":"Seema Mital","is_ca":true},{"name":"Marta Melé","is_ca":false},{"name":"Philipp G. Maass","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005043023269969908,"gpt":0.1812834871721594,"spread":0.1762404639021895,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003035638,0.0002492986,0.0003410402,0.0006756857,0.0002193097,0.0003129683,0.0002918819,0.0002535525,0.001138305],"category_scores_gemma":[0.0005715317,0.0001617169,0.0004518022,0.000620647,0.0002150249,0.00008728707,0.0003028882,0.0004809611,0.0003398379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002182516,"about_ca_system_score_gemma":0.0003343149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001230712,"about_ca_topic_score_gemma":0.003135475,"domain_scores_codex":[0.9997219,0.00004093938,0.00002461577,0.0001190158,0.00006360608,0.00002981749],"domain_scores_gemma":[0.9996501,0.0001473264,0.00008282632,0.00005895758,0.0000284225,0.00003232538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001506808,0.00003104966,0.006759884,0.00009364892,0.00005902979,0.0003905408,0.00005786807,0.00108779,0.976965,0.0009858778,0.000150419,0.01326822],"study_design_scores_gemma":[0.0001168826,0.000493051,0.2195816,0.00005106646,0.0004734113,0.004632378,0.0001221406,0.02248621,0.7202426,0.00236384,0.02936973,0.00006715594],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9215462,0.001162128,0.06670445,0.0001440001,0.00003702604,0.0001267843,0.007270033,0.000494866,0.002514577],"genre_scores_gemma":[0.9403415,0.0007808721,0.04619058,0.0001813091,0.00002103984,0.00008353589,0.01066829,0.0002091328,0.001523786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001230712,"threshold_uncertainty_score":0.003808022,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402620321","doi":"10.1016/j.xgen.2024.100654","title":"Functional and dynamic profiling of transcript isoforms reveals essential roles of alternative splicing in interferon response","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"RIKEN; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Institute of Genetics; Tokyo Medical and Dental University; National Institute of Genetics; Uehara Memorial Foundation","keywords":"Gene isoform; Biology; Interferon; Alternative splicing; RNA splicing; Innate immune system; Intron; Immune system; Interferon type I; Gene; Genetics; Protein isoform; Computational biology; Cell biology; RNA","authors":[{"name":"Mahoko Takahashi Ueda","is_ca":false},{"name":"Jun Inamo","is_ca":false},{"name":"Fuyuki Miya","is_ca":false},{"name":"Mihoko Shimada","is_ca":false},{"name":"Kensuke Yamaguchi","is_ca":false},{"name":"Yuta Kochi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00882150111201221,"gpt":0.2566260282672691,"spread":0.2478045271552569,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001598281,0.0001377831,0.0001350099,0.0003071735,0.0001445288,0.0002433637,0.00008504477,0.000163211,0.0004833936],"category_scores_gemma":[0.0001699528,0.0001163823,0.0001670771,0.0003034267,0.0001278334,0.0001418098,0.00009519824,0.0002691023,0.0003218867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001259996,"about_ca_system_score_gemma":0.00008317427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002595965,"about_ca_topic_score_gemma":0.0004450854,"domain_scores_codex":[0.9998888,0.00001545216,0.000008798436,0.00004097715,0.00002910624,0.00001688626],"domain_scores_gemma":[0.9998729,0.00003026869,0.00003669486,0.00001804918,0.00002423364,0.00001781146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008601241,0.000004658753,0.001794013,0.000009282061,0.00000236325,0.0000293666,0.00001713064,0.00005833977,0.9963571,0.00005535512,0.00001922757,0.001567125],"study_design_scores_gemma":[0.00001198774,0.0001903424,0.1431963,0.00001317721,0.00004286417,0.0007486071,0.0001314296,0.005862932,0.845631,0.0005118661,0.003644996,0.00001452732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912645,0.0004040664,0.006637926,0.00003854441,0.00001099341,0.000009684692,0.0009455738,0.00004872666,0.0006400385],"genre_scores_gemma":[0.98779,0.0003463094,0.008233164,0.00005772264,0.00001249698,0.00002295286,0.002305993,0.00005226686,0.001179091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004833936,"threshold_uncertainty_score":0.001617134,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4390707563","doi":"10.1016/j.xgen.2023.100464","title":"A temporal extracellular transcriptome atlas of human pre-implantation development","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Division of Diabetes, Endocrinology, and Metabolic Diseases; Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Institute of Human Development, Child and Youth Health; National Institutes of Health","keywords":"Transcriptome; Embryo; Biology; Embryogenesis; Cell biology; Extracellular; Gene expression; Computational biology; Gene; Developmental stage; Genetics","authors":[{"name":"Qiuyang Wu","is_ca":false},{"name":"Zixu Zhou","is_ca":false},{"name":"Zhangming Yan","is_ca":false},{"name":"Megan Connel","is_ca":false},{"name":"Gabriel Garzo","is_ca":false},{"name":"Analisa Yeo","is_ca":false},{"name":"Wei Zhang","is_ca":false},{"name":"H. Irene Su","is_ca":false},{"name":"Sheng Zhong","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01323009455666112,"gpt":0.2687660917880775,"spread":0.2555359972314163,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001763769,0.0001788585,0.000219446,0.0007385226,0.0001973163,0.0003122104,0.0001472265,0.0002377001,0.001733213],"category_scores_gemma":[0.0003296341,0.0001082583,0.0003198622,0.0008603541,0.00009442263,0.0001625606,0.0003240559,0.0003209362,0.0006171862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001760438,"about_ca_system_score_gemma":0.0004172034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008085978,"about_ca_topic_score_gemma":0.001903166,"domain_scores_codex":[0.9998733,0.00001636161,0.00001044879,0.00004657697,0.00003959343,0.00001375792],"domain_scores_gemma":[0.9998068,0.0000537902,0.00004172268,0.00003018068,0.00004587045,0.00002160395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003260141,0.00004123077,0.01771847,0.0004842553,0.0001072281,0.0003761176,0.0001448055,0.002398869,0.9132873,0.001283647,0.003493097,0.06033899],"study_design_scores_gemma":[0.0000369919,0.0004423989,0.4595545,0.0001255654,0.0002614169,0.005283908,0.0003002134,0.02512509,0.3982465,0.002762323,0.1077733,0.00008774326],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.635963,0.006078597,0.178806,0.0002679291,0.0001111107,0.0002614481,0.1641687,0.002337097,0.01200606],"genre_scores_gemma":[0.6894667,0.003991346,0.1433992,0.0002581428,0.00005432612,0.0008055835,0.1549223,0.0004675633,0.006634833],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001733213,"threshold_uncertainty_score":0.005798161,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389795744","doi":"10.1016/j.xgen.2023.100465","title":"Multi-ancestry genetic analysis of gene regulation in coronary arteries prioritizes disease risk loci","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Horizon 2020 Framework Programme; European Research Area Network on Cardiovascular Diseases; National Institutes of Health; Vetenskapsrådet; Fondation Leducq; National Institute of General Medical Sciences; Lung Health Foundation; American Heart Association; National Heart, Lung, and Blood Institute; Hartstichting; Silicon Valley Community Foundation","keywords":"Expression quantitative trait loci; Genome-wide association study; Coronary artery disease; Quantitative trait locus; Genetic association; Biology; Genetics; Haplotype; Disease; Gene; Allele; Single-nucleotide polymorphism; Bioinformatics; Medicine; Internal medicine; Genotype","authors":[{"name":"Chani J. Hodonsky","is_ca":false},{"name":"Adam W. Turner","is_ca":false},{"name":"Mohammad Daud Khan","is_ca":false},{"name":"Nelson B. Barrientos","is_ca":false},{"name":"Ruben Methorst","is_ca":false},{"name":"Lijiang Ma","is_ca":false},{"name":"Nicolás López","is_ca":false},{"name":"José Verdezoto Mosquera","is_ca":false},{"name":"Gaëlle Auguste","is_ca":false},{"name":"Emily Farber","is_ca":false},{"name":"Wei Feng","is_ca":false},{"name":"Doris Wong","is_ca":false},{"name":"Suna Önengüt-Gümüşcü","is_ca":false},{"name":"Maryam Kavousi","is_ca":false},{"name":"Patricia A. Peyser","is_ca":false},{"name":"Sander W. van der Laan","is_ca":false},{"name":"Nicholas J. Leeper","is_ca":false},{"name":"Jason C. Kovacic","is_ca":false},{"name":"Johan Björkegren","is_ca":false},{"name":"Clint L. Miller","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01650583630541139,"gpt":0.2567240379107368,"spread":0.2402182016053254,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009551088,0.0003018979,0.0003636747,0.001304246,0.0003809949,0.000619435,0.0002555465,0.0002662001,0.002199097],"category_scores_gemma":[0.001678193,0.0001210082,0.0003993393,0.001208855,0.0002511925,0.0001855372,0.0007068163,0.0004103252,0.0002191169],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001452423,"about_ca_system_score_gemma":0.0002105955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001838947,"about_ca_topic_score_gemma":0.003578563,"domain_scores_codex":[0.9993929,0.0002223424,0.00003464993,0.0002245171,0.00006894681,0.00005663227],"domain_scores_gemma":[0.9993451,0.0002980362,0.0001579515,0.0001028457,0.00004364458,0.00005247168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006286701,0.00007985825,0.8468332,0.00007085264,0.0006107184,0.0006526003,0.000545215,0.001762145,0.1063514,0.001490901,0.0004261053,0.04054832],"study_design_scores_gemma":[0.00003456533,0.0001410195,0.9805573,0.00002304081,0.0003585846,0.0009763044,0.0002307812,0.006413933,0.007695567,0.001932069,0.00161782,0.00001914352],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912652,0.0003486216,0.006932148,0.0001121715,0.000006930973,0.00001384684,0.0004999752,0.00004850318,0.0007725006],"genre_scores_gemma":[0.9952145,0.0001525956,0.003987406,0.00005575032,0.000009915957,0.000009930749,0.0002755277,0.00002485273,0.0002695194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002199097,"threshold_uncertainty_score":0.007356644,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4295988800","doi":"10.1016/j.xgen.2022.100169","title":"A patient-driven clinicogenomic partnership for metastatic prostate cancer","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; Genentech; Puma Biotechnology; U.S. Department of Defense; Broad Institute; Prostate Cancer Foundation; Movember Foundation; American Society of Clinical Oncology; National Institutes of Health; National Science Foundation; Conquer Cancer Foundation; Roche","keywords":"General partnership; Prostate cancer; Economic shortage; Medicine; Lung cancer; Exome sequencing; Exome; Oncology; Internal medicine; Cancer; Biology; Political science; Gene","authors":[{"name":"Jett Crowdis","is_ca":false},{"name":"Sara Balch","is_ca":false},{"name":"Lauren Sterlin","is_ca":false},{"name":"Beena Thomas","is_ca":false},{"name":"Sabrina Y. Camp","is_ca":false},{"name":"Michael Dunphy","is_ca":false},{"name":"Elana Anastasio","is_ca":false},{"name":"Shahrayz Shah","is_ca":false},{"name":"Alyssa L. Damon","is_ca":false},{"name":"Rafael Ramos","is_ca":false},{"name":"Delia Sosa","is_ca":false},{"name":"Ilan K. Small","is_ca":false},{"name":"Brett N. Tomson","is_ca":false},{"name":"Colleen M. Nguyen","is_ca":false},{"name":"Mary McGillicuddy","is_ca":false},{"name":"Parker Chastain","is_ca":false},{"name":"Meng Xiao He","is_ca":false},{"name":"Alexander T. M. Cheung","is_ca":false},{"name":"Stephanie A. Wankowicz","is_ca":false},{"name":"Alok K. Tewari","is_ca":false},{"name":"Dewey Kim","is_ca":false},{"name":"Saud H. AlDubayan","is_ca":false},{"name":"Ayanah Dowdye","is_ca":false},{"name":"Benjamin Zola","is_ca":false},{"name":"Joel Nowak","is_ca":false},{"name":"Jan Manarite","is_ca":false},{"name":"Idola Henry Gunn","is_ca":false},{"name":"Bryce T. Olson","is_ca":false},{"name":"Eric S. Lander","is_ca":false},{"name":"Corrie Painter","is_ca":false},{"name":"Nikhil Wagle","is_ca":false},{"name":"Eliezer M. Van Allen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06978238686570135,"gpt":0.3516212293824745,"spread":0.2818388425167732,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007502805,0.0002431121,0.0002385456,0.0004780728,0.003350416,0.002057413,0.0008769567,0.0006811799,0.01205727],"category_scores_gemma":[0.0114374,0.0002749405,0.0002712717,0.0007329865,0.0007822906,0.001352273,0.00619757,0.002117206,0.002605547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001193557,"about_ca_system_score_gemma":0.008472487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003253218,"about_ca_topic_score_gemma":0.009297908,"domain_scores_codex":[0.993713,0.004375673,0.0001240764,0.0006419512,0.000647835,0.0004974637],"domain_scores_gemma":[0.9857972,0.00181299,0.0009642642,0.001522489,0.002003881,0.007899217],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001740247,0.004561509,0.3057204,0.0004063708,0.0001376929,0.004022222,0.01422076,0.001274611,0.01587429,0.008174671,0.1779588,0.4659085],"study_design_scores_gemma":[0.0009782731,0.006192634,0.178615,0.0004920732,0.0001693414,0.01938614,0.02397279,0.007465594,0.01493349,0.01438175,0.7331042,0.0003087985],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.752731,0.002992983,0.08113157,0.07701624,0.00128508,0.006734681,0.01009968,0.002305629,0.0657031],"genre_scores_gemma":[0.8865665,0.001238159,0.07081455,0.01624374,0.0005411286,0.00394634,0.003671688,0.0004343759,0.01654349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01205727,"threshold_uncertainty_score":0.0403356,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4290189723","doi":"10.1016/j.xgen.2022.100141","title":"Global priorities for large-scale biomarker-based prospective cohorts","year":2022,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Health, Environment, Cognitive Aging","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; Centre for Global Health Research","funders":"Medical Research Council; Cancer Research UK; Wellcome Trust","keywords":"Scale (ratio); Data collection; Data science; Diversity (politics); Data sharing; Environmental health; Computer science; Geography; Environmental resource management; Political science; Medicine; Sociology; Environmental science","authors":[{"name":"Rory Collins","is_ca":false},{"name":"Mary K. Balaconis","is_ca":false},{"name":"Søren Brunak","is_ca":false},{"name":"Zhengming Chen","is_ca":false},{"name":"Mary De Silva","is_ca":false},{"name":"J. Michael Gaziano","is_ca":false},{"name":"Geoffrey S. Ginsburg","is_ca":false},{"name":"Prabhat Jha","is_ca":true},{"name":"Pablo Kuri","is_ca":false},{"name":"Andres Metspalu","is_ca":false},{"name":"Nicola Mulder","is_ca":false},{"name":"Neil Risch","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01144408894097678,"gpt":0.2368029962014094,"spread":0.2253589072604326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.2219184,0.002052351,0.002799757,0.00410745,0.002512465,0.006834948,0.006131844,0.007578482,0.01163978],"category_scores_gemma":[0.1189365,0.0013932,0.002623447,0.003616807,0.003788903,0.007538656,0.01965642,0.01013648,0.003205299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003422498,"about_ca_system_score_gemma":0.06006362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01176179,"about_ca_topic_score_gemma":0.009776668,"domain_scores_codex":[0.9567058,0.03116821,0.002809616,0.002748266,0.003248378,0.003319815],"domain_scores_gemma":[0.7834451,0.07765371,0.01451154,0.02974641,0.04835787,0.04628538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00524108,0.002232797,0.1328571,0.01093527,0.001992798,0.001643137,0.006737051,0.008029254,0.0136309,0.1369202,0.213344,0.4664364],"study_design_scores_gemma":[0.002153566,0.003255676,0.1784181,0.01099325,0.0008117468,0.001178713,0.01104437,0.003430979,0.003013532,0.09256384,0.6927065,0.0004297704],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.04999745,0.05153741,0.2315545,0.5944737,0.01394974,0.01326973,0.01983634,0.002664102,0.02271709],"genre_scores_gemma":[0.233944,0.03221768,0.5113147,0.1475354,0.008122304,0.02952183,0.02922168,0.0006784398,0.007443991],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2219184,"threshold_uncertainty_score":0.9595132,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4386101803","doi":"10.1016/j.xgen.2023.100388","title":"Unraveling dynamically encoded latent transcriptomic patterns in pancreatic cancer cells by topic modeling","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Provincial Health Services Authority; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; BC Cancer Foundation; Provincial Health Services Authority","keywords":"Pancreatic cancer; Computational biology; Robustness (evolution); Computer science; Bayesian probability; Genomics; Topic model; RNA; Transcriptome; Gene; Biology; Cancer; Bioinformatics; Gene expression; Artificial intelligence; Genome; Genetics","authors":[{"name":"Yichen Zhang","is_ca":true},{"name":"Mohammadali Khalilitousi","is_ca":true},{"name":"Yongjin Park","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01452774063633577,"gpt":0.2240818695249296,"spread":0.2095541288885938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001351286,0.0004893237,0.0008061216,0.001106755,0.0003518187,0.001239336,0.0006291491,0.0007151135,0.0007551184],"category_scores_gemma":[0.002870424,0.0003715606,0.001059047,0.00132956,0.0006190711,0.001162138,0.0006974808,0.00104592,0.0002509761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00068559,"about_ca_system_score_gemma":0.0007076336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004682445,"about_ca_topic_score_gemma":0.005620908,"domain_scores_codex":[0.9995843,0.00009911339,0.00001953284,0.0001823359,0.00004504584,0.0000696798],"domain_scores_gemma":[0.9986038,0.0009757985,0.0001747648,0.0001029944,0.00008738213,0.00005530576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006508175,0.0002057969,0.1167403,0.000446187,0.0006184629,0.0005466323,0.001957773,0.5860258,0.1044948,0.05986467,0.003760493,0.1246881],"study_design_scores_gemma":[0.000008679875,0.00002636885,0.009567657,0.00001035464,0.00004784263,0.00006769483,0.00008819047,0.9707109,0.001875551,0.0163738,0.001200398,0.00002249794],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3588918,0.001337256,0.6368284,0.0004335345,0.00003374045,0.00004030639,0.001176968,0.0004040516,0.0008538458],"genre_scores_gemma":[0.9605315,0.0007338033,0.0355969,0.00007831895,0.00006568646,0.0001123988,0.001457563,0.00009756798,0.001326172],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004682445,"threshold_uncertainty_score":0.009310365,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4416102983","doi":"10.1016/j.xgen.2025.101061","title":"Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Digestive Diseases Reseach Core Center, University of Chicago; Public Health Agency of Canada; National Institutes of Health; Ruth K. Broad Biomedical Research Foundation","keywords":"Chromatin; Expression quantitative trait loci; Genome-wide association study; Quantitative trait locus; Context (archaeology); ChIA-PET; Gene; Cell type; Causal inference","authors":[{"name":"Zepeng Mu","is_ca":false},{"name":"Haley E. Randolph","is_ca":false},{"name":"Raúl Aguirre‐Gamboa","is_ca":false},{"name":"Ellen Ketter","is_ca":false},{"name":"Anne Dumaine","is_ca":false},{"name":"Veronica Locher","is_ca":false},{"name":"Cary Brandolino","is_ca":false},{"name":"Xuanyao Liu","is_ca":false},{"name":"Daniel E. Kaufmann","is_ca":true},{"name":"Luis B. Barreiro","is_ca":false},{"name":"Yang Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007189307469137048,"gpt":0.2918120992022065,"spread":0.2846227917330694,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001986583,0.0003730463,0.000665644,0.0009852186,0.0004337499,0.001064088,0.0003299146,0.0003114268,0.002564879],"category_scores_gemma":[0.003148061,0.0002520557,0.0009269888,0.0008588805,0.0007144994,0.0003655548,0.001213652,0.0005865196,0.0001669023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002949802,"about_ca_system_score_gemma":0.0003119192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004150692,"about_ca_topic_score_gemma":0.005057824,"domain_scores_codex":[0.9987418,0.0004149974,0.00006265721,0.0005705634,0.00009866297,0.0001112882],"domain_scores_gemma":[0.9974182,0.001799371,0.0002590932,0.000325008,0.0000756723,0.0001226981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001143249,0.00004619391,0.8996809,0.0001126373,0.001023378,0.0004565948,0.0008249686,0.008488731,0.06770347,0.002146511,0.0002802231,0.01809313],"study_design_scores_gemma":[0.00009706288,0.0002727627,0.9462782,0.00003638966,0.0007940838,0.00101545,0.0006231587,0.03192323,0.01039078,0.006617909,0.001905952,0.00004512164],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858127,0.0004702084,0.01225293,0.00008163598,0.000006945347,0.00001242425,0.000819972,0.00008657546,0.0004566186],"genre_scores_gemma":[0.9983007,0.00003954514,0.001267312,0.00002205879,0.000002975416,0.00000686043,0.0002769587,0.00001605811,0.0000676191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004150692,"threshold_uncertainty_score":0.01050615,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4403245132","doi":"10.1016/j.xgen.2024.100670","title":"The loach haplotype-resolved genome and the identification of Mex3a involved in fish air breathing","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of Agriculture","funders":"Huazhong Agricultural University; National Natural Science Foundation of China","keywords":"Haplotype; Fish <Actinopterygii>; Identification (biology); Biology; Genome; Evolutionary biology; Genetics; Breathing; Computational biology; Fishery; Gene; Anatomy; Ecology; Genotype","authors":[{"name":"Bing Sun","is_ca":false},{"name":"Qingshan Li","is_ca":false},{"name":"Xinxin Xiao","is_ca":false},{"name":"Jianwei Zhang","is_ca":false},{"name":"Yuwei Huang","is_ca":false},{"name":"Jian Gao","is_ca":true},{"name":"Xiaojuan Cao","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006618291304832509,"gpt":0.1990815028877974,"spread":0.1924632115829649,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108843,0.0002058894,0.0002018858,0.0005137728,0.0003068791,0.000241173,0.0001377504,0.0002710719,0.00113081],"category_scores_gemma":[0.000222329,0.0001346242,0.0004033139,0.0005125101,0.0001367334,0.0001727066,0.0003971612,0.0004542011,0.000307444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001585304,"about_ca_system_score_gemma":0.0002372262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002396033,"about_ca_topic_score_gemma":0.005184558,"domain_scores_codex":[0.9999318,0.000005815972,0.000005236155,0.00003082235,0.00001335812,0.00001290812],"domain_scores_gemma":[0.999894,0.00001972448,0.00003262256,0.00001178774,0.00002099426,0.00002081363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002323412,0.00001995875,0.02157598,0.000142042,0.00004632789,0.0002863521,0.0001852708,0.0002987685,0.9678206,0.0001850677,0.0001718302,0.00903538],"study_design_scores_gemma":[0.0000396607,0.0002452543,0.8608981,0.00008235312,0.0003180025,0.001654444,0.0007207509,0.006615638,0.1104551,0.0006823028,0.01823951,0.00004876079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900098,0.0007661051,0.005718461,0.00008502198,0.0000154413,0.00001500544,0.002424585,0.00008674289,0.0008788005],"genre_scores_gemma":[0.9754764,0.0005383334,0.01151762,0.0001052928,0.00001178218,0.000035187,0.01048415,0.00009292431,0.00173837],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002396033,"threshold_uncertainty_score":0.004764199,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4411179148","doi":"10.1016/j.xgen.2025.100916","title":"CXCR4-LASP1-G9a-SNAIL axis drives NEPC transdifferentiation via induction of EMT and downregulation of REST","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research - Antimicrobial Resistance Research Initiative; Terry Fox Research Institute; Canadian Cancer Society; Canadian Institutes of Health Research; Cancer Research Society; Government of Canada; U.S. Department of Defense","keywords":"Transdifferentiation; Downregulation and upregulation; Rest (music); Snail; Biology; Medicine; Cell biology; Internal medicine; Ecology; Genetics; Gene; Stem cell","authors":[{"name":"Liangliang Liu","is_ca":false},{"name":"Itzel Astiazarán Rascón","is_ca":true},{"name":"Dong Lin","is_ca":false},{"name":"Yuchao Ni","is_ca":false},{"name":"Xin Dong","is_ca":false},{"name":"Hui Xue","is_ca":false},{"name":"Yen‐Yi Lin","is_ca":false},{"name":"Anne Haegert","is_ca":false},{"name":"Funda Sar","is_ca":false},{"name":"James W. Peacock","is_ca":true},{"name":"Tabitha Tombe","is_ca":false},{"name":"Christopher Dusek","is_ca":true},{"name":"Amina Zoubeidi","is_ca":true},{"name":"Martin Gleave","is_ca":true},{"name":"Colin C. Collins","is_ca":true},{"name":"François Bénard","is_ca":true},{"name":"Yuzhuo Wang","is_ca":true},{"name":"Christopher J. Ong","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008339556459344288,"gpt":0.2165145164363343,"spread":0.20817495997699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008955791,0.0001493657,0.0001265559,0.0001308559,0.0001128673,0.000222898,0.00007735503,0.00009408595,0.001091361],"category_scores_gemma":[0.00005130039,0.00009947964,0.0001366151,0.00009006663,0.0001648027,0.0001068428,0.0001392035,0.0004093701,0.000255422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002781232,"about_ca_system_score_gemma":0.0002523147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001078969,"about_ca_topic_score_gemma":0.002331314,"domain_scores_codex":[0.999928,0.00001128599,0.000004104139,0.00001836634,0.00002189769,0.00001638376],"domain_scores_gemma":[0.9999526,0.000006487603,0.00001672045,0.000005168413,0.000005768135,0.00001338327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004469351,0.000009395138,0.0009089049,0.00001248754,0.00000271109,0.00002376987,0.00001040959,0.00009756639,0.9977778,0.00008707461,0.00002211798,0.001003046],"study_design_scores_gemma":[0.000008836812,0.0002282108,0.01739461,0.000003225921,0.000009470159,0.0002334536,0.00004385682,0.002434352,0.9776803,0.00004769273,0.00191265,0.000003317919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943691,0.0003631315,0.003445777,0.00005668305,0.000004888647,0.00002166894,0.0005110858,0.00008930346,0.00113828],"genre_scores_gemma":[0.9957719,0.0002281195,0.001969317,0.00002774821,0.000001379234,0.00001744552,0.0004310734,0.0000152847,0.001537685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001091361,"threshold_uncertainty_score":0.003650963,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410121130","doi":"10.1016/j.xgen.2025.100874","title":"Ribonuclease activity undermines immune sensing of naked extracellular RNA","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"NIH Office of the Director; Comisión Sectorial de Investigación Científica; National Institutes of Health; Institut Pasteur de Montevideo; Universidad de la República Uruguay; University of British Columbia; Agencia Nacional de Investigación e Innovación","keywords":"Ribonuclease; RNA; Extracellular; Immune system; Chemistry; Cell biology; Biology; Biochemistry; Genetics; Gene","authors":[{"name":"Mauricio Castellano","is_ca":false},{"name":"Valentina Blanco","is_ca":false},{"name":"Marco Li Calzi","is_ca":false},{"name":"Bruno Costa","is_ca":false},{"name":"Kenneth W. Witwer","is_ca":false},{"name":"Marcelo Hill","is_ca":false},{"name":"Alfonso Cayota","is_ca":false},{"name":"Mercedes Segovia","is_ca":false},{"name":"Juan Pablo Tosar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00808632470308198,"gpt":0.2249074639642825,"spread":0.2168211392612005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005168759,0.0003760271,0.0003469401,0.0001645125,0.0001295137,0.0006819694,0.0001936752,0.0004407027,0.00074554],"category_scores_gemma":[0.0005208825,0.0001782993,0.0002956852,0.00007584724,0.0005656478,0.0003736549,0.0003547851,0.0005160556,0.0004885996],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000220269,"about_ca_system_score_gemma":0.0002220136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001209603,"about_ca_topic_score_gemma":0.0001482683,"domain_scores_codex":[0.9995642,0.0001349893,0.00002818333,0.00009443307,0.000119817,0.00005818036],"domain_scores_gemma":[0.999635,0.0001499248,0.0001034693,0.00004943947,0.00003579985,0.00002648556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001639378,0.0000023118,0.00005355992,0.00002945781,0.000002263843,0.00002559893,0.00001171224,0.00002441274,0.9990447,0.0001771105,0.000007093322,0.0006052485],"study_design_scores_gemma":[0.000002623195,0.0000885355,0.0004011902,0.00000545396,0.000006054649,0.0001268566,0.00001040603,0.0003563628,0.9979486,0.0001017023,0.0009500476,0.000002210273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9341382,0.00583824,0.05396001,0.0003133383,0.0001224891,0.00005660875,0.0001167048,0.0003055207,0.005148894],"genre_scores_gemma":[0.9843898,0.001308717,0.011134,0.0002339441,0.00003203578,0.00003825962,0.000122691,0.00005585413,0.00268473],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00074554,"threshold_uncertainty_score":0.002733529,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388871065","doi":"10.1016/j.xgen.2023.100440","title":"Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"NHLBI Division of Intramural Research; National Institute of General Medical Sciences; National Cancer Institute; Government of South Australia; Searle Scholars Program; U.S. Food and Drug Administration; Life Sciences Research Foundation; Hamilton Health Sciences Foundation; Gilead Sciences; Aldeyra Therapeutics; Bill and Melinda Gates Foundation; Arnold and Mabel Beckman Foundation; Battelle; National Science Foundation; Damon Runyon Cancer Research Foundation; Alfred P. Sloan Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; U.S. Department of Health and Human Services; Pew Charitable Trusts; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute","keywords":"Ebola virus; Biology; Virology; Virus; Pathogen; Host (biology); Disease; Viral load; Tissue tropism; Immunology; Genetics; Medicine; Pathology; Tropism","authors":[{"name":"Erica Normandin","is_ca":false},{"name":"Sergio Triana","is_ca":false},{"name":"Siddharth S. Raju","is_ca":false},{"name":"Tammy C. T. Lan","is_ca":false},{"name":"Kim A. Lagerborg","is_ca":false},{"name":"Melissa A. Rudy","is_ca":false},{"name":"Gordon Adams","is_ca":false},{"name":"Katherine C. DeRuff","is_ca":false},{"name":"James Logue","is_ca":false},{"name":"David Liu","is_ca":false},{"name":"Daniel Strebinger","is_ca":false},{"name":"Arya Rao","is_ca":false},{"name":"Katelyn S. Messer","is_ca":false},{"name":"M Sacks","is_ca":false},{"name":"Ricky Adams","is_ca":false},{"name":"Krisztina Janosko","is_ca":false},{"name":"Dylan Kotliar","is_ca":false},{"name":"Rickey R. Shah","is_ca":false},{"name":"Ian Crozier","is_ca":false},{"name":"John L. Rinn","is_ca":false},{"name":"Marta Melé","is_ca":false},{"name":"Anna N. Honko","is_ca":false},{"name":"Feng Zhang","is_ca":false},{"name":"Mehrtash Babadi","is_ca":false},{"name":"Jeremy Luban","is_ca":false},{"name":"Richard S. Bennett","is_ca":false},{"name":"Alex K. Shalek","is_ca":false},{"name":"Nikolaos Barkas","is_ca":false},{"name":"Aaron E. Lin","is_ca":false},{"name":"Lisa E. Hensley","is_ca":false},{"name":"Pardis C. Sabeti","is_ca":false},{"name":"Katherine J. Siddle","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02645018627268399,"gpt":0.2819461449272687,"spread":0.2554959586545847,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001646918,0.0001086838,0.0001755453,0.0003222429,0.0002232445,0.0002304406,0.00008769437,0.0001251873,0.0003671392],"category_scores_gemma":[0.0003199138,0.00009368049,0.0001091429,0.0001634399,0.0002850873,0.0001295101,0.000173708,0.0002583136,0.0001204048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002146872,"about_ca_system_score_gemma":0.00009283415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001089197,"about_ca_topic_score_gemma":0.001830711,"domain_scores_codex":[0.9999058,0.00001964519,0.000004316893,0.0000350121,0.00001276875,0.00002249636],"domain_scores_gemma":[0.9998572,0.00003364358,0.00004107578,0.00002284207,0.00002037767,0.00002481655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002296199,0.000027076,0.1213839,0.00002740816,0.00003379047,0.0001943907,0.0003841352,0.0002280852,0.8718698,0.0001482775,0.00008231536,0.005391287],"study_design_scores_gemma":[0.000004661127,0.0002339256,0.9550866,0.0000066801,0.00003001684,0.0008574896,0.0004180055,0.001671491,0.04026741,0.0002640813,0.001146363,0.0000131711],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991455,0.0001670306,0.0003742286,0.00001331633,0.000001118772,0.000003104821,0.00008481738,0.000006780555,0.0002041595],"genre_scores_gemma":[0.9988374,0.0001045863,0.0005651647,0.0000297175,0.000002740832,0.00001417278,0.0002218734,0.000008148537,0.0002162634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001089197,"threshold_uncertainty_score":0.002165735,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410218486","doi":"10.1016/j.xgen.2025.100876","title":"Identification of targetable vulnerabilities of PLK1-overexpressing cancers by synthetic dosage lethality","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; Cameco (Canada); University of Calgary; Global Institute for Water Security; Agriculture and Agri-Food Canada; University of Saskatchewan; University of Alberta; Saskatchewan Cancer Agency","funders":"Canada Foundation for Innovation; Canadian Institutes of Health Research; Mitacs; Saskatchewan Health Research Foundation; Cancer Research Society; Saskatchewan Cancer Agency; Deutsche Forschungsgemeinschaft; University of Saskatchewan","keywords":"Synthetic lethality; Lethality; Identification (biology); Cancer research; Medicine; Computational biology; Biology; Toxicology; Genetics; DNA repair; DNA","authors":[{"name":"Chelsea E. Cunningham","is_ca":true},{"name":"Frederick S. Vizeacoumar","is_ca":true},{"name":"Yue Zhang","is_ca":true},{"name":"Liliia Kyrylenko","is_ca":true},{"name":"Simon Both","is_ca":true},{"name":"Vincent Maranda","is_ca":true},{"name":"He Dong","is_ca":true},{"name":"Jared D. W. Price","is_ca":true},{"name":"Peng Gao","is_ca":true},{"name":"Konrad Wagner","is_ca":true},{"name":"Yingwen Wu","is_ca":false},{"name":"Mary Lazell-Wright","is_ca":true},{"name":"Ashtalakshmi Ganapathysamy","is_ca":true},{"name":"Rithik Hari","is_ca":true},{"name":"Kalpana K. Bhanumathy","is_ca":true},{"name":"Connor Denomy","is_ca":true},{"name":"Anjali Saxena","is_ca":true},{"name":"Jeff Patrick Vizeacoumar","is_ca":true},{"name":"Alain Morejon Morales","is_ca":true},{"name":"Faizaan Khan","is_ca":true},{"name":"Shayla R. Mosley","is_ca":true},{"name":"A. Chen","is_ca":true},{"name":"Tetiana Katrii","is_ca":true},{"name":"Ben G. E. Zoller","is_ca":true},{"name":"Karthic Rajamanickam","is_ca":true},{"name":"Prachi Walke","is_ca":true},{"name":"Lihui Gong","is_ca":true},{"name":"Hardikkumar Patel","is_ca":true},{"name":"Hussain Elhasasna","is_ca":true},{"name":"Renuka Dahiya","is_ca":true},{"name":"Omar Abuhussein","is_ca":true},{"name":"Anton E. Dmitriev","is_ca":true},{"name":"Tanya Freywald","is_ca":true},{"name":"Érika Prando Munhoz","is_ca":true},{"name":"Eytan Ruppin","is_ca":true},{"name":"Joo Sang Lee","is_ca":false},{"name":"Katharina Rox","is_ca":false},{"name":"Martin Köebel","is_ca":true},{"name":"Laura Hopkins","is_ca":true},{"name":"Cheng‐Han Lee","is_ca":true},{"name":"Sunil Yadav","is_ca":true},{"name":"Gilles Gasparoni","is_ca":true},{"name":"Jörn Walter","is_ca":false},{"name":"Anand Krishnan","is_ca":true},{"name":"Raju Datla","is_ca":true},{"name":"Behzad M. Toosi","is_ca":true},{"name":"Kristi Baker","is_ca":true},{"name":"Jalna Meens","is_ca":true},{"name":"David W. Cescon","is_ca":true},{"name":"Laurie Ailles","is_ca":true},{"name":"Scot C. Leary","is_ca":true},{"name":"Yuliang Wu","is_ca":true},{"name":"Martin Empting","is_ca":true},{"name":"Alexandra K. Kiemer","is_ca":false},{"name":"Andrew Freywald","is_ca":true},{"name":"Franco J. Vizeacoumar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003997066014212802,"gpt":0.2193270117571821,"spread":0.2153299457429693,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002181761,0.0006711966,0.0003239308,0.0005351767,0.000171493,0.0004380564,0.0002663585,0.0003002606,0.001801464],"category_scores_gemma":[0.0001682735,0.0001742947,0.0003039177,0.0002302469,0.0002806628,0.0001710286,0.0004773297,0.0006907673,0.0004025576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003745101,"about_ca_system_score_gemma":0.0002257865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003674038,"about_ca_topic_score_gemma":0.001026795,"domain_scores_codex":[0.9997987,0.00002588465,0.00001905399,0.0000520533,0.00007341778,0.00003085544],"domain_scores_gemma":[0.9998626,0.00003028859,0.00004877082,0.00002265602,0.00001018582,0.00002561793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003175997,0.00001712995,0.0002484982,0.00002829012,0.000006727289,0.00005455497,0.000007082512,0.0002570577,0.9974776,0.0001267936,0.00003790748,0.001706606],"study_design_scores_gemma":[0.00001023209,0.000270401,0.002759601,0.000006724389,0.00002460336,0.0004248617,0.00002067961,0.001964135,0.9919091,0.00006694855,0.002535575,0.000007075112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9734126,0.001344311,0.01959925,0.0001767037,0.00004188899,0.0001661417,0.001752195,0.0006061748,0.002900793],"genre_scores_gemma":[0.9896987,0.0009011209,0.00517314,0.00006154374,0.000005207365,0.00008857263,0.001109796,0.00008809296,0.002873775],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001801464,"threshold_uncertainty_score":0.006026506,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412087326","doi":"10.1016/j.xgen.2025.100926","title":"Landscape and m6A post-transcriptional regulation of soybean proteome","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"National Science and Technology Major Project; China Agricultural Research System; Ministry of Agriculture and Rural Affairs of the People's Republic of China; Taishan Scholar Project of Shandong Province; Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences; Natural Science Foundation of Shandong Province; National Key Research and Development Program of China; Chinese Academy of Agricultural Sciences; Natural Science Foundation of Hebei Province; National Natural Science Foundation of China","keywords":"Proteome; Computational biology; Biology; Cell biology; Bioinformatics","authors":[{"name":"Qing Yang","is_ca":false},{"name":"Zhiyang Hou","is_ca":false},{"name":"Linxia Li","is_ca":false},{"name":"Leili Wang","is_ca":false},{"name":"Shang‐Tong Li","is_ca":false},{"name":"Yaping Li","is_ca":false},{"name":"Xuemin Zhang","is_ca":false},{"name":"Huanwei Huang","is_ca":false},{"name":"Yunzhuo Ke","is_ca":false},{"name":"Xiaofei Ma","is_ca":false},{"name":"Zexuan Wu","is_ca":false},{"name":"Zhi Liu","is_ca":false},{"name":"Xiaolei Shi","is_ca":false},{"name":"Chaofan Liu","is_ca":false},{"name":"Chen Meng","is_ca":false},{"name":"Hai Du","is_ca":false},{"name":"Mingxun Chen","is_ca":false},{"name":"Xiaofeng Gu","is_ca":false},{"name":"Zhe Yan","is_ca":false},{"name":"Faming Wang","is_ca":false},{"name":"Xiaofang Luo","is_ca":false},{"name":"Long Yan","is_ca":false},{"name":"Zhe Liang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004446480054639853,"gpt":0.206054693264669,"spread":0.2016082132100291,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000164952,0.0002110838,0.0002185659,0.0004591805,0.0002430553,0.0003735071,0.0001135791,0.0002086223,0.0007143993],"category_scores_gemma":[0.0001675642,0.0001676436,0.0002563841,0.0004604386,0.0001567948,0.0002916613,0.0002979673,0.0002397225,0.0002905905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003495621,"about_ca_system_score_gemma":0.0001943198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001862558,"about_ca_topic_score_gemma":0.003357135,"domain_scores_codex":[0.9998785,0.000008663196,0.000005333475,0.00006112973,0.00003153755,0.00001466336],"domain_scores_gemma":[0.9998934,0.0000131568,0.00004591018,0.000008225034,0.0000229722,0.00001628854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001077758,0.00000413605,0.006777894,0.00005862951,0.00002668575,0.00003284683,0.00003338806,0.0001643861,0.9901307,0.00006234368,0.0001303044,0.00247087],"study_design_scores_gemma":[0.00001502229,0.0001474046,0.7057538,0.00002297745,0.0001115467,0.0005983177,0.0001800566,0.006749346,0.2774838,0.0005797336,0.008320134,0.00003789021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9868483,0.002102892,0.003516471,0.0001219513,0.00001145058,0.000009483562,0.005947737,0.0001276952,0.001314073],"genre_scores_gemma":[0.9845096,0.001032169,0.004812841,0.0001213582,0.000009526885,0.00002045662,0.008284323,0.00005574433,0.00115394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001862558,"threshold_uncertainty_score":0.003703475,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4414281027","doi":"10.1016/j.xgen.2025.101007","title":"Single-nucleus transcriptome atlas of orbitofrontal cortex in ALS with a deep learning-based decoding of alternative polyadenylation mechanisms","year":2025,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"The Wilson Centre; Sinai Health System; Sunnybrook Health Science Centre; University of Toronto; University Health Network; Princess Margaret Cancer Centre; Health Sciences Centre; Occupational Cancer Research Centre","funders":"Canadian Institutes of Health Research; ALS Society of Canada; McGill University; Consortium canadien en neurodégénérescence associée au vieillissement; ALS Association; Foundation for the National Institutes of Health","keywords":"Polyadenylation; Frontotemporal lobar degeneration; Amyotrophic lateral sclerosis; Transcriptome; Frontotemporal dementia; Orbitofrontal cortex; C9orf72; microRNA; Prefrontal cortex","authors":[{"name":"Paul M. McKeever","is_ca":true},{"name":"Aiden M. Sababi","is_ca":true},{"name":"Raghav Sharma","is_ca":true},{"name":"Zhiyu Xu","is_ca":true},{"name":"Shangxi Xiao","is_ca":true},{"name":"Philip McGoldrick","is_ca":true},{"name":"Troy Ketela","is_ca":true},{"name":"Christine Sato","is_ca":true},{"name":"Danielle Moreno","is_ca":true},{"name":"Naomi P. Visanji","is_ca":true},{"name":"Gábor G. Kovács","is_ca":true},{"name":"Julia Keith","is_ca":true},{"name":"Lorne Zinman","is_ca":true},{"name":"Ekaterina Rogaeva","is_ca":true},{"name":"Hani Goodarzi","is_ca":false},{"name":"Gary D. Bader","is_ca":true},{"name":"Janice Robertson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01636713717049412,"gpt":0.2557433171676102,"spread":0.2393761799971161,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001606749,0.0003425505,0.0002744079,0.0005363743,0.0002964211,0.0003106345,0.0002449819,0.0003081326,0.00196203],"category_scores_gemma":[0.0002202734,0.0001576816,0.0004210277,0.0004698031,0.0001739636,0.0001133414,0.0003863324,0.0002771708,0.0005202683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004911796,"about_ca_system_score_gemma":0.0009173122,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01487148,"about_ca_topic_score_gemma":0.03209857,"domain_scores_codex":[0.999926,0.000007569385,0.000002928037,0.00003319219,0.00001573745,0.00001460446],"domain_scores_gemma":[0.9999514,0.00001280798,0.000008051935,0.00000721069,0.00001355865,0.000006888157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001315364,0.0001541445,0.06705736,0.001109775,0.0008530332,0.001849994,0.0006833702,0.1239144,0.6129937,0.005421169,0.03176347,0.1528843],"study_design_scores_gemma":[0.000155957,0.0003179138,0.2109377,0.0001939735,0.0005319504,0.002494765,0.0007142223,0.590782,0.1308663,0.01223368,0.05063638,0.0001351217],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7722669,0.003641475,0.137512,0.0004239646,0.0001217087,0.0001076045,0.0744359,0.005227522,0.006262897],"genre_scores_gemma":[0.870039,0.001196219,0.069517,0.000161604,0.00002487298,0.0002377775,0.05453206,0.0005057226,0.003785728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01487148,"threshold_uncertainty_score":0.0295698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4405288250","doi":"10.1016/j.xgen.2024.100721","title":"Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; HEC Montréal; Hospital for Sick Children; Mila - Quebec Artificial Intelligence Institute; Centre Hospitalier Universitaire Sainte-Justine","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute on Drug Abuse; National Institute of Mental Health; National Institute for Health and Care Research; National Institute on Aging; Economic and Social Research Council; National Center for Mental Health; Wellcome Trust; Biotechnology and Biological Sciences Research Council; Medical Research Council; Scottish Government; Chief Scientist Office, Scottish Government Health and Social Care Directorate; Directorate for Biological Sciences; National Institutes of Health; Health and Care Research Wales; Deutsche Forschungsgemeinschaft; Bundesministerium für Bildung und Forschung; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; Compute Canada; Age UK; Scottish Funding Council; King's College London; Agence Nationale de la Recherche; Fondation Brain Canada; South London and Maudsley NHS Foundation Trust; Heart and Stroke Foundation of Canada","keywords":"Brain function; Association (psychology); Cognition; Neuroscience; Psychology; Medicine; Psychotherapist","authors":[{"name":"Guillaume Huguet","is_ca":true},{"name":"Thomas Renné","is_ca":true},{"name":"Cécile Poulain","is_ca":true},{"name":"Alma Dubuc","is_ca":false},{"name":"Kuldeep Kumar","is_ca":true},{"name":"Sayeh Kazem","is_ca":true},{"name":"Worrawat Engchuan","is_ca":true},{"name":"Omar Shanta","is_ca":false},{"name":"Élise Douard","is_ca":true},{"name":"Catherine Proulx","is_ca":true},{"name":"Martineau Jean‐Louis","is_ca":true},{"name":"Zohra Saci","is_ca":true},{"name":"Josephine Mollon","is_ca":false},{"name":"Laura M. Schultz","is_ca":false},{"name":"Emma Knowles","is_ca":false},{"name":"Simon R. Cox","is_ca":false},{"name":"David J. Porteous","is_ca":false},{"name":"Gail Davies","is_ca":false},{"name":"Paul Redmond","is_ca":false},{"name":"Sarah E. Harris","is_ca":false},{"name":"Günter Schumann","is_ca":false},{"name":"Guillaume Dumas","is_ca":true},{"name":"Aurélie Labbe","is_ca":true},{"name":"Zdenka Pausová","is_ca":true},{"name":"Tomaš Paus","is_ca":true},{"name":"Stephen W. Scherer","is_ca":true},{"name":"Jonathan Sebat","is_ca":false},{"name":"Laura Almasy","is_ca":false},{"name":"David C. Glahn","is_ca":false},{"name":"Sébastien Jacquemont","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003899412071569251,"gpt":0.2254252178657647,"spread":0.2215258057941955,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001127651,0.0007001167,0.0005242932,0.001496529,0.000423703,0.000668812,0.0004633174,0.0005626708,0.001661593],"category_scores_gemma":[0.00260873,0.0002323,0.0007536767,0.001311396,0.0006583403,0.0003122367,0.0007196153,0.0004861022,0.000195738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002724443,"about_ca_system_score_gemma":0.0002140402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001946938,"about_ca_topic_score_gemma":0.002746449,"domain_scores_codex":[0.9989414,0.0003420455,0.00008078916,0.0004127065,0.0001457637,0.00007745633],"domain_scores_gemma":[0.9985714,0.0006380597,0.0003250172,0.0002460995,0.0000793547,0.0001400345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00241997,0.0002697257,0.8875266,0.0001206505,0.002984512,0.001472088,0.0006911875,0.0008155915,0.08365688,0.0005151348,0.0002567966,0.01927087],"study_design_scores_gemma":[0.00004479833,0.0003422459,0.9947585,0.000008064019,0.0005766888,0.0007913472,0.0000698056,0.0008116767,0.001933729,0.0002733745,0.0003756672,0.00001396926],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985049,0.0003020582,0.0007050434,0.00003979497,0.000004373163,0.000006825936,0.0001739113,0.00000919988,0.0002538569],"genre_scores_gemma":[0.9988292,0.0001099571,0.0006472329,0.00003163934,0.00001026922,0.00001272164,0.0001587874,0.0000108969,0.0001893663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001946938,"threshold_uncertainty_score":0.005963624,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}