{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":90,"total_is_capped":false,"direct_labels_cover":2,"predictions_cover":90,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"7a2ffd1dfdf0","filters":{"venue":"Cellular and Molecular Gastroenterology and Hepatology"}},"results":[{"id":"W2990307813","doi":"10.1016/j.jcmgh.2019.11.008","title":"Human Colon-on-a-Chip Enables Continuous In Vitro Analysis of Colon Mucus Layer Accumulation and Physiology","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Defense Advanced Research Projects Agency; U.S. Food and Drug Administration; Hamilton Health Sciences Foundation; Hansjörg Wyss Institute for Biologically Inspired Engineering, Harvard University; Harvard University; National Cancer Institute; Advanced Research Projects Agency; Cancer Research UK; Bayer","keywords":"Mucus; In vitro; Layer (electronics); Medicine; Physiology; Chemistry; Biology; Biochemistry; Ecology","authors":[{"name":"Alexandra Sontheimer-Phelps","is_ca":false},{"name":"David B. Chou","is_ca":false},{"name":"Alessio Tovaglieri","is_ca":false},{"name":"Thomas C. Ferrante","is_ca":false},{"name":"Taylor Duckworth","is_ca":false},{"name":"Cicely W. Fadel","is_ca":false},{"name":"Viktoras Frismantas","is_ca":false},{"name":"Arlene D. Sutherland","is_ca":false},{"name":"Sasan Jalili‐Firoozinezhad","is_ca":false},{"name":"Magdalena Kasendra","is_ca":false},{"name":"Eric Stas","is_ca":false},{"name":"James C. Weaver","is_ca":false},{"name":"Camilla A. Richmond","is_ca":false},{"name":"Oren Levy","is_ca":false},{"name":"Rachelle Prantil‐Baun","is_ca":false},{"name":"David T. Breault","is_ca":false},{"name":"Donald E. Ingber","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01236704165513206,"gpt":0.262379985080426,"spread":0.250012943425294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004388924,0.0005115287,0.0003695537,0.0003537943,0.0002021051,0.0004818242,0.0004050421,0.0007333132,0.002391046],"category_scores_gemma":[0.0004023767,0.000257388,0.0004073632,0.0001559065,0.0003137265,0.000270301,0.0003902912,0.0004983663,0.000780066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003473384,"about_ca_system_score_gemma":0.0004811617,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001032383,"about_ca_topic_score_gemma":0.002159549,"domain_scores_codex":[0.9997086,0.00005325039,0.00001447597,0.00009156271,0.00008769389,0.00004449509],"domain_scores_gemma":[0.999608,0.0001463255,0.0000687771,0.00006491725,0.00006879855,0.0000433431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005271453,0.00002531471,0.0005049011,0.0001044886,0.00001390655,0.00006640655,0.0000225748,0.0003212551,0.9941567,0.000192881,0.0005632344,0.003975655],"study_design_scores_gemma":[0.0000285127,0.0004310508,0.007017676,0.00002958112,0.0000615408,0.0005049718,0.00005255046,0.009858659,0.9661668,0.0001235269,0.01567494,0.00005015897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6362935,0.009745381,0.3297334,0.00119668,0.0006677111,0.0006206518,0.00716861,0.004825468,0.009748685],"genre_scores_gemma":[0.7801622,0.003131261,0.207017,0.0006130033,0.00007132999,0.0008516326,0.002726581,0.000194253,0.005232735],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002391046,"threshold_uncertainty_score":0.007998824,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2914907475","doi":"10.1016/j.jcmgh.2019.01.004","title":"Modulation of Gut Microbiota Composition by Serotonin Signaling Influences Intestinal Immune Response and Susceptibility to Colitis","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University Medical Centre; University of Manitoba; McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Centre National de la Recherche Scientifique; McMaster University","keywords":"Gut flora; Colitis; Microbiology; Dysbiosis; Biology; Enterochromaffin cell; Serotonin; Chemistry; Immunology; Biochemistry; Receptor","authors":[{"name":"Yun Han Kwon","is_ca":true},{"name":"Huaqing Wang","is_ca":true},{"name":"Emmanuel Denou","is_ca":true},{"name":"Jean‐Eric Ghia","is_ca":true},{"name":"Laura Rossi","is_ca":true},{"name":"Michelle E. Fontes","is_ca":true},{"name":"Steve P. Bernier","is_ca":true},{"name":"Md. Sharif Shajib","is_ca":true},{"name":"Suhrid Banskota","is_ca":true},{"name":"Stephen M. Collins","is_ca":true},{"name":"Michael G. Surette","is_ca":true},{"name":"Waliul I. Khan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004324339448124589,"gpt":0.2253641219316716,"spread":0.221039782483547,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001155665,0.0002874188,0.0003548353,0.0002488009,0.0001147318,0.0003264731,0.0001123855,0.000330944,0.001460724],"category_scores_gemma":[0.0001607899,0.0001369308,0.0002430027,0.000127604,0.0002316433,0.0001434133,0.0002054719,0.0005026782,0.0002043773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002184765,"about_ca_system_score_gemma":0.0001231496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004275067,"about_ca_topic_score_gemma":0.0007808696,"domain_scores_codex":[0.999835,0.00003418857,0.00001225088,0.00004283491,0.00002562172,0.00004997398],"domain_scores_gemma":[0.9997947,0.00001696815,0.00008077995,0.00001268907,0.00001574717,0.00007918535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001657265,0.00009704317,0.01196476,0.0001118148,0.00003562781,0.0001739446,0.00003685617,0.00006249323,0.9807481,0.00004869308,0.00009498466,0.004968362],"study_design_scores_gemma":[0.0001231154,0.003853584,0.6885617,0.00009495328,0.0003137527,0.001213828,0.0003633947,0.001684261,0.3005937,0.0002609024,0.002902644,0.00003408045],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970471,0.001736802,0.0004514188,0.00008655938,0.00001729188,0.00001362965,0.0002370428,0.00002533153,0.0003848678],"genre_scores_gemma":[0.9970254,0.001285953,0.000687506,0.00009372162,0.00002029683,0.00002886677,0.0002524369,0.00000940032,0.0005964406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001460724,"threshold_uncertainty_score":0.004886627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1491176685","doi":"10.1016/j.jcmgh.2015.06.005","title":"Defects in Nicotinamide-adenine Dinucleotide Phosphate Oxidase Genes NOX1 and DUOX2 in Very Early Onset Inflammatory Bowel Disease","year":2015,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":152,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Crohn's and Colitis Canada; Hospital for Sick Children; European Commission; Agency for Healthcare Research and Quality; National Institutes of Health; Science Foundation Ireland; Crohn's and Colitis Foundation of America; Canadian Association of Gastroenterology; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"NOX1; Nicotinamide adenine dinucleotide phosphate; Biology; Inflammatory bowel disease; Missense mutation; Exome sequencing; NADPH oxidase; Molecular biology; Microbiology; Gene; Genetics; Mutation; Reactive oxygen species; Oxidase test; Biochemistry; Enzyme; Medicine; Disease","authors":[{"name":"Patti Hayes","is_ca":false},{"name":"Sandeep Dhillon","is_ca":false},{"name":"Kim O’Neill","is_ca":false},{"name":"Cornelia Thoeni","is_ca":false},{"name":"Ken Hui","is_ca":false},{"name":"Abdul Elkadri","is_ca":false},{"name":"Conghui Guo","is_ca":false},{"name":"Lidija Kovačič","is_ca":false},{"name":"Gabriella Aviello","is_ca":false},{"name":"Luis Álvarez","is_ca":false},{"name":"Anne M. Griffiths","is_ca":true},{"name":"Scott B. Snapper","is_ca":false},{"name":"Steven R. Brant","is_ca":false},{"name":"James H. Doroshow","is_ca":false},{"name":"Mark S. Silverberg","is_ca":true},{"name":"Inga Peter","is_ca":false},{"name":"Dermot McGovern","is_ca":false},{"name":"Judy H. Cho","is_ca":false},{"name":"John H. Brumell","is_ca":true},{"name":"Holm H. Uhlig","is_ca":false},{"name":"Billy Bourke","is_ca":false},{"name":"Aleixo A Muise","is_ca":false},{"name":"Ulla G. Knaus","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007934672383592248,"gpt":0.2008521521033273,"spread":0.1929174797197351,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002891645,0.0004466899,0.0002434574,0.0004738963,0.0002780721,0.0002082074,0.0003087399,0.0004223364,0.0015452],"category_scores_gemma":[0.0005079965,0.0001103478,0.0002766388,0.0002959659,0.0002794981,0.0001111378,0.0002534614,0.0002804927,0.0001521902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001999422,"about_ca_system_score_gemma":0.0001166762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007912679,"about_ca_topic_score_gemma":0.0008509585,"domain_scores_codex":[0.9998197,0.00003792293,0.00001766645,0.00005350408,0.00004341649,0.00002784669],"domain_scores_gemma":[0.9996945,0.00007379822,0.0001357287,0.00001280402,0.00002609667,0.00005708077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001837077,0.0002251452,0.5546963,0.0003919468,0.0002667315,0.04081176,0.0006709923,0.0009481826,0.3468379,0.001080074,0.0009644277,0.0512695],"study_design_scores_gemma":[0.00007459722,0.0004286057,0.8379542,0.0001315007,0.0003038335,0.1033914,0.0002857799,0.001564332,0.04802078,0.0006779933,0.00714005,0.00002693672],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958581,0.001996843,0.001208429,0.00007293304,0.00001840133,0.000008222609,0.000178357,0.00003290969,0.0006257137],"genre_scores_gemma":[0.9981103,0.0003921321,0.001004817,0.00003568731,0.000009996947,0.000004952266,0.0001310708,0.000006138499,0.0003048824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0015452,"threshold_uncertainty_score":0.005169153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2811149247","doi":"10.1016/j.jcmgh.2018.06.008","title":"IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Bristol-Myers Squibb Canada; National Institutes of Health","keywords":"Organoid; Interleukin 22; Progenitor cell; Stem cell; Biology; Cell biology; Regeneration (biology); Cytokine; Immunology; Interleukin","authors":[{"name":"Bailey Zwarycz","is_ca":false},{"name":"Adam D. Gracz","is_ca":false},{"name":"Kristina R. Rivera","is_ca":false},{"name":"Ian Williamson","is_ca":false},{"name":"Leigh Ann Samsa","is_ca":false},{"name":"Josh Starmer","is_ca":false},{"name":"Michael A. Daniele","is_ca":false},{"name":"Luisa Salter–Cid","is_ca":false},{"name":"Qihong Zhao","is_ca":false},{"name":"Scott T. Magness","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005987812662925134,"gpt":0.2104630583419138,"spread":0.2044752456789886,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002277224,0.0004467027,0.0002916355,0.0005035827,0.0001480146,0.0003069572,0.0002375811,0.0003487899,0.001770899],"category_scores_gemma":[0.0001130517,0.0001204335,0.0003083081,0.0001739064,0.0003258792,0.000205097,0.0002144422,0.001035343,0.0004231583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002519711,"about_ca_system_score_gemma":0.0002719608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003587573,"about_ca_topic_score_gemma":0.0006136888,"domain_scores_codex":[0.9998363,0.00004025543,0.00001403474,0.00002616929,0.00004719667,0.00003601158],"domain_scores_gemma":[0.9997637,0.00003816384,0.00005697931,0.00003115579,0.00001844212,0.00009161912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004611463,0.0003190515,0.0001693902,0.00005943492,0.000006601544,0.0000846933,0.00003183404,0.0002116282,0.9967119,0.00009944595,0.0001046616,0.001740302],"study_design_scores_gemma":[0.00005408354,0.002082579,0.001056858,0.00001231794,0.00002250526,0.0001162748,0.00003650607,0.001095044,0.9933304,0.00003958107,0.002149356,0.000004359189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993018,0.001186372,0.002724304,0.0001520605,0.00008236671,0.00006923594,0.000368737,0.0001679933,0.002230844],"genre_scores_gemma":[0.9920243,0.0008539773,0.002314808,0.00007124936,0.00001816433,0.0001242331,0.0005404048,0.00002670244,0.004026061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001770899,"threshold_uncertainty_score":0.005924284,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2899043391","doi":"10.1016/j.jcmgh.2018.10.015","title":"Regulation of Chylomicron Secretion: Focus on Post-Assembly Mechanisms","year":2018,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Lymphatic System and Diseases","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Chylomicron; Secretion; Focus (optics); Cell biology; Medicine; Biology; Internal medicine; Lipoprotein; Cholesterol; Very low-density lipoprotein","authors":[{"name":"Changting Xiao","is_ca":true},{"name":"Priska Stahel","is_ca":true},{"name":"Gary F. Lewis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01411463681459432,"gpt":0.263941922289985,"spread":0.2498272854753907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004880569,0.0007362349,0.001059671,0.001495898,0.0002651686,0.001042582,0.0006887752,0.0009493098,0.002423422],"category_scores_gemma":[0.0005671062,0.0002173048,0.0004295073,0.001345119,0.0005654473,0.001674312,0.0008233437,0.001329045,0.001083571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000541294,"about_ca_system_score_gemma":0.001149743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000594926,"about_ca_topic_score_gemma":0.0007038172,"domain_scores_codex":[0.9998542,0.00002068448,0.00002595689,0.00003431012,0.0000440596,0.00002063526],"domain_scores_gemma":[0.9997405,0.0001234794,0.00003857674,0.000008315178,0.00006387997,0.00002515398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001448614,0.00006952032,0.0004525036,0.02473075,0.0001104589,0.0005810267,0.0001433709,0.0005020192,0.007830967,0.00847494,0.01719234,0.9397673],"study_design_scores_gemma":[0.00001512495,0.0001258615,0.001225794,0.002971262,0.0001141491,0.002163726,0.0001112438,0.000156519,0.002192083,0.002844368,0.9880537,0.00002625026],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002046946,0.9985329,0.0001786822,0.0002654913,0.0001668944,0.000002766817,0.00001264574,0.000006954835,0.0006289237],"genre_scores_gemma":[0.0009011825,0.9983339,0.0001386312,0.0001167758,0.0001182624,0.000003917448,0.00002005369,0.000001295687,0.0003659822],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002423422,"threshold_uncertainty_score":0.008107185,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2604856012","doi":"10.1016/j.jcmgh.2017.03.011","title":"The Circadian Clock Gene BMAL1 Coordinates Intestinal Regeneration","year":2017,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Windsor","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; RIKEN; Harvard Digestive Diseases Center, Harvard University; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research; National Institute of Diabetes and Digestive and Kidney Diseases; Intellectual and Developmental Disabilities Research Center; National Institutes of Health; National Institute of Neurological Disorders and Stroke; University of Windsor","keywords":"Circadian rhythm; Circadian clock; Biology; Intestinal epithelium; CLOCK; Gastrointestinal function; Small intestine; Cell biology; Endocrinology; Internal medicine; Short bowel syndrome; Epithelium; Medicine; Genetics","authors":[{"name":"Kyle Stokes","is_ca":true},{"name":"Abrial Ann Marie Cooke","is_ca":true},{"name":"Hanna Chang","is_ca":true},{"name":"David R. Weaver","is_ca":false},{"name":"David T. Breault","is_ca":false},{"name":"Phillip Karpowicz","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01441487048406816,"gpt":0.2347827801310108,"spread":0.2203679096469426,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001553961,0.0001977414,0.0002156472,0.0003097836,0.0002966987,0.0004309879,0.0002849241,0.0002023063,0.001653836],"category_scores_gemma":[0.0002790526,0.0001263296,0.0001737639,0.0001392943,0.0003982174,0.0003172546,0.0005298283,0.0004791486,0.0003793316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006935744,"about_ca_system_score_gemma":0.0005242917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00100096,"about_ca_topic_score_gemma":0.00174666,"domain_scores_codex":[0.9998673,0.00001972309,0.000006110849,0.00003645694,0.00002738583,0.00004303965],"domain_scores_gemma":[0.9997807,0.00001407291,0.00008082468,0.00001528492,0.00003471598,0.00007450421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004495042,0.00002222248,0.002422658,0.00008909377,0.00001056698,0.000145204,0.00009989988,0.0003064847,0.9834678,0.001384857,0.0007867996,0.01081489],"study_design_scores_gemma":[0.0001273614,0.0005084235,0.1485837,0.0001126456,0.00009693473,0.0007496263,0.0007226128,0.007756243,0.805335,0.002713712,0.03323761,0.00005600102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9660041,0.009380291,0.01590432,0.0008104142,0.0003460063,0.00003348072,0.0005322765,0.0004938975,0.006495022],"genre_scores_gemma":[0.9913505,0.001395637,0.002590686,0.000127844,0.00003556721,0.00002985142,0.000277658,0.00006286149,0.004129406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001653836,"threshold_uncertainty_score":0.005532682,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3199086925","doi":"10.1016/j.jcmgh.2021.08.001","title":"The Circadian Clock Gene, Bmal1, Regulates Intestinal Stem Cell Signaling and Represses Tumor Initiation","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Population Health Research Institute; University of Windsor","funders":"National Institute of Neurological Disorders and Stroke; Natural Sciences and Engineering Research Council of Canada; National Cancer Institute; National Institutes of Health; Ontario Institute for Regenerative Medicine; Crohn's and Colitis Canada; National Heart, Lung, and Blood Institute; Fundação de Amparo à Pesquisa do Estado de São Paulo; Canadian Institutes of Health Research; Mitacs; Canada Research Chairs","keywords":"Circadian rhythm; Circadian clock; Biology; Cell biology; Stem cell; Gene; Cancer research; Genetics; Endocrinology","authors":[{"name":"Kyle Stokes","is_ca":true},{"name":"Malika Nunes","is_ca":true},{"name":"Chantelle Trombley","is_ca":true},{"name":"Danilo E. F. L. Flôres","is_ca":false},{"name":"Gang Wu","is_ca":false},{"name":"Zainab Taleb","is_ca":true},{"name":"Abedalrhman Alkhateeb","is_ca":true},{"name":"Suhrid Banskota","is_ca":true},{"name":"Chris Harris","is_ca":true},{"name":"Oliver P. Love","is_ca":true},{"name":"Waliul I. Khan","is_ca":true},{"name":"Luis Rueda","is_ca":true},{"name":"John B. Hogenesch","is_ca":false},{"name":"Phillip Karpowicz","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01249715004773066,"gpt":0.2111251782668258,"spread":0.1986280282190951,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009628468,0.0003125985,0.0001428358,0.0006352012,0.000245719,0.0002755929,0.0002507314,0.0002103362,0.001637929],"category_scores_gemma":[0.00006597025,0.0001421702,0.0001809156,0.000291653,0.0002643102,0.0001669551,0.00021655,0.0004147568,0.0004557997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005183682,"about_ca_system_score_gemma":0.0003593593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001448375,"about_ca_topic_score_gemma":0.003275118,"domain_scores_codex":[0.9998884,0.00001140008,0.000005692724,0.00002810798,0.00003714885,0.00002919455],"domain_scores_gemma":[0.9999039,0.000005321619,0.00003404656,0.00001036826,0.00001026764,0.00003602964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002947372,0.00004042756,0.0009906539,0.0000381896,0.000006336781,0.00005820025,0.00001739529,0.000112439,0.9956992,0.0002505078,0.0002612694,0.002230774],"study_design_scores_gemma":[0.00004422526,0.0003826959,0.02229854,0.00001315243,0.00003821326,0.0003143417,0.00007180071,0.001845227,0.9663215,0.0001619032,0.008498603,0.000009737511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9863594,0.00126342,0.006405518,0.0002520431,0.00007309135,0.00005612794,0.00280944,0.0003596636,0.002421186],"genre_scores_gemma":[0.9837843,0.0009991084,0.004759582,0.00006860418,0.00001054683,0.000082278,0.002376399,0.00006835914,0.007850718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001637929,"threshold_uncertainty_score":0.005479455,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4307570293","doi":"10.1016/j.jcmgh.2022.10.014","title":"The Pregnane X Receptor and Indole-3-Propionic Acid Shape the Intestinal Mesenchyme to Restrain Inflammation and Fibrosis","year":2022,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"National Cancer Institute; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Crohn's and Colitis Canada; Society of Architectural Historians; Canada Research Chairs; U.S. Department of Defense","keywords":"Inflammation; Fibrosis; Pregnane X receptor; Colitis; Biology; Innate immune system; Inflammatory bowel disease; Immunology; Immune system; Medicine; Internal medicine; Nuclear receptor; Biochemistry; Transcription factor","authors":[{"name":"Kyle L. Flannigan","is_ca":true},{"name":"Kristoff Nieves","is_ca":true},{"name":"Holly Szczepanski","is_ca":true},{"name":"Alex Serra","is_ca":true},{"name":"Joshua W. Lee","is_ca":true},{"name":"Laurie Alston","is_ca":true},{"name":"Hena R. Ramay","is_ca":false},{"name":"Sridhar Mani","is_ca":false},{"name":"Simon A. Hirota","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006178151524059278,"gpt":0.2077668489596989,"spread":0.2015886974356396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002366224,0.0003888982,0.0002463233,0.000232116,0.0002158813,0.0004903048,0.0003012875,0.0004097176,0.001956571],"category_scores_gemma":[0.0001975574,0.0002461991,0.000388727,0.0001061546,0.0005500669,0.0003757711,0.0005325904,0.0007251971,0.0006301681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002425444,"about_ca_system_score_gemma":0.0003038476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004796155,"about_ca_topic_score_gemma":0.0009537076,"domain_scores_codex":[0.9997036,0.00005366414,0.00002108768,0.00004972369,0.0001042539,0.00006767409],"domain_scores_gemma":[0.9998209,0.0000147176,0.0000654449,0.00002058337,0.00002054002,0.00005784526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001681048,0.000009309683,0.0005230753,0.0001073957,0.000008336174,0.000244035,0.000036543,0.00006980346,0.9954576,0.000702012,0.0001352071,0.002538563],"study_design_scores_gemma":[0.0001207735,0.0008746758,0.02227608,0.00007083593,0.00006670025,0.002438409,0.000379886,0.001294911,0.9460763,0.0007707497,0.02560039,0.00003029094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9461687,0.02347049,0.01655173,0.001872545,0.000349578,0.00008882838,0.0005133679,0.0004521703,0.01053259],"genre_scores_gemma":[0.9757588,0.006622363,0.006314311,0.0003757913,0.00008783121,0.00005027912,0.0002150571,0.00005759804,0.01051798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001956571,"threshold_uncertainty_score":0.006545424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2922000510","doi":"10.1016/j.jcmgh.2019.04.010","title":"Human Intestinal Enteroids With Inducible Neurogenin-3 Expression as a Novel Model of Gut Hormone Secretion","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; Fonds de Recherche du Québec - Santé; Presbyterian Historical Society; National Cancer Institute; National Institutes of Health; Baylor College of Medicine; Cancer Prevention and Research Institute of Texas","keywords":"Secretion; Hormone; Expression (computer science); Cell biology; Biology; Endocrinology; Computer science","authors":[{"name":"Alexandra L. Chang‐Graham","is_ca":false},{"name":"Heather A. Danhof","is_ca":false},{"name":"Melinda A. Engevik","is_ca":false},{"name":"Catherine Tomaro-Duchesneau","is_ca":false},{"name":"Umesh C. Karandikar","is_ca":false},{"name":"Mary K. Estes","is_ca":false},{"name":"James Versalovic","is_ca":false},{"name":"Robert A. Britton","is_ca":false},{"name":"Joseph M. Hyser","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01121837932793184,"gpt":0.2271343867720992,"spread":0.2159160074441674,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003620823,0.0005214618,0.0004334449,0.0004699113,0.0002130797,0.0004928972,0.0005098206,0.0005703646,0.001529623],"category_scores_gemma":[0.0001806389,0.0002053959,0.0005348455,0.0002570998,0.0005502968,0.0003708058,0.0005011605,0.001602067,0.0005432682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006474556,"about_ca_system_score_gemma":0.0003941748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005767376,"about_ca_topic_score_gemma":0.001034646,"domain_scores_codex":[0.9996575,0.00005895588,0.0000322519,0.00008538592,0.000110974,0.00005494077],"domain_scores_gemma":[0.9997494,0.00004011948,0.00006460063,0.00004777683,0.00002298794,0.00007515504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003896794,0.0001395552,0.0001970504,0.00009320039,0.000009353513,0.0002072447,0.00004221473,0.0002283498,0.9966461,0.0002930837,0.0001004711,0.001653584],"study_design_scores_gemma":[0.0001338995,0.001543455,0.002373506,0.00003228694,0.00006312667,0.0006084272,0.0001192951,0.001845916,0.9792109,0.000157483,0.01389316,0.00001844981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9633305,0.004193573,0.02348227,0.0005010811,0.0003335901,0.0004393299,0.001694083,0.0004680114,0.005557468],"genre_scores_gemma":[0.9694364,0.002703713,0.0175231,0.0001791387,0.00002788599,0.0005508927,0.001781333,0.0001218673,0.00767567],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001529623,"threshold_uncertainty_score":0.005117118,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2807031272","doi":"10.1016/j.jcmgh.2018.04.008","title":"A Method for Cryogenic Preservation of Human Biopsy Specimens and Subsequent Organoid Culture","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Environmental Health Sciences; National Institute of Allergy and Infectious Diseases","keywords":"Organoid; Biopsy; Medicine; Pathology; Biology; Cell biology","authors":[{"name":"Yu-Hwai Tsai","is_ca":false},{"name":"Michael Czerwinski","is_ca":false},{"name":"Angeline Wu","is_ca":false},{"name":"Michael K. Dame","is_ca":false},{"name":"Durga Attili","is_ca":false},{"name":"Evan M. Hill","is_ca":false},{"name":"Justin A. Colacino","is_ca":false},{"name":"Lauren Marie Nowacki","is_ca":false},{"name":"Noah F. Shroyer","is_ca":false},{"name":"Peter Higgins","is_ca":false},{"name":"John Y. Kao","is_ca":false},{"name":"Jason R. Spence","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0134503076537595,"gpt":0.2849501822736216,"spread":0.2714998746198621,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004112293,0.001656796,0.001195735,0.007043249,0.002545833,0.001433859,0.001867438,0.001666809,0.03186561],"category_scores_gemma":[0.003049942,0.001335133,0.00161166,0.004163472,0.001694966,0.001782902,0.002875551,0.003182585,0.02605421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005167144,"about_ca_system_score_gemma":0.00231684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001380954,"about_ca_topic_score_gemma":0.005889502,"domain_scores_codex":[0.9980097,0.0003047183,0.0004188031,0.0004459477,0.000622019,0.0001988733],"domain_scores_gemma":[0.9970361,0.0006180351,0.0002692146,0.001124435,0.0007827272,0.0001694187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007831629,0.0003814462,0.001947994,0.004945144,0.0002146701,0.004655352,0.001440909,0.0009574954,0.6958794,0.006900699,0.06235374,0.21954],"study_design_scores_gemma":[0.0002291476,0.0009762377,0.01011007,0.002082615,0.0002947039,0.009066165,0.0006049175,0.001349967,0.2006248,0.003812674,0.7705708,0.0002779339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02526581,0.01839305,0.8476319,0.003145026,0.004860967,0.01541891,0.01690789,0.009891908,0.05848457],"genre_scores_gemma":[0.0314936,0.01711417,0.8775729,0.002254979,0.0005796591,0.02246883,0.01589763,0.00347369,0.02914457],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03186561,"threshold_uncertainty_score":0.1066011,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3179477775","doi":"10.1016/j.jcmgh.2021.07.005","title":"The Production and Function of Endogenous Interleukin-10 in Intestinal Epithelial Cells and Gut Homeostasis","year":2021,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; W. Garfield Weston Foundation","keywords":"Endogeny; Function (biology); Homeostasis; Interleukin 22; Cell biology; Production (economics); Interleukin; Intestinal epithelium; Immunology; Biology; Medicine; Epithelium; Cytokine; Endocrinology; Pathology; Economics","authors":[{"name":"Huong D. Nguyen","is_ca":true},{"name":"Hanan M. Aljamaei","is_ca":true},{"name":"Andrew W. Stadnyk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02018785183394683,"gpt":0.2276566528291099,"spread":0.2074688009951631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000527355,0.0006945798,0.0007927393,0.001211274,0.0001962045,0.0008340679,0.0006381508,0.0009085784,0.002028059],"category_scores_gemma":[0.0005609088,0.0001953408,0.0002503154,0.001190409,0.0005548148,0.001041265,0.0006284805,0.001912299,0.00188691],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005298056,"about_ca_system_score_gemma":0.001005373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004778794,"about_ca_topic_score_gemma":0.0007761329,"domain_scores_codex":[0.9998587,0.00002270012,0.00002074397,0.00002289019,0.00005656063,0.00001828257],"domain_scores_gemma":[0.9998117,0.00007166766,0.00003011085,0.000007149614,0.0000494451,0.00002985169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00010586,0.00005153824,0.0002304962,0.01152135,0.00004895507,0.000258006,0.00005956482,0.0003260621,0.003559912,0.006692162,0.03061099,0.9465351],"study_design_scores_gemma":[0.00001433547,0.00007423067,0.0008835415,0.00215632,0.0000420629,0.001130405,0.00004209476,0.00006095343,0.0007383667,0.002570962,0.9922739,0.00001286306],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009737604,0.9985796,0.000106586,0.0002519509,0.0002902474,0.000002590409,0.00001031973,0.000004624492,0.0006566912],"genre_scores_gemma":[0.0006885572,0.998332,0.0001024036,0.0001336616,0.0002721572,0.0000055706,0.00002116747,9.181788e-7,0.0004435966],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002028059,"threshold_uncertainty_score":0.006784499,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3016270993","doi":"10.1016/j.jcmgh.2020.04.004","title":"Perturbed Mitochondrial Dynamics Is a Novel Feature of Colitis That Can Be Targeted to Lessen Disease","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada","keywords":"Mitochondrial fission; FIS1; Colitis; mitochondrial fusion; Inflammatory bowel disease; Mitochondrion; Inflammation; Cell biology; Chemistry; Biology; Immunology; Mitochondrial DNA; Medicine; Pathology; Biochemistry; Disease","authors":[{"name":"Nicole L. Mancini","is_ca":true},{"name":"Luke Goudie","is_ca":true},{"name":"Warren Xu","is_ca":true},{"name":"Rasha Sabouny","is_ca":true},{"name":"Sruthi Rajeev","is_ca":true},{"name":"Arthur Wang","is_ca":true},{"name":"Nicolas Esquerre","is_ca":true},{"name":"Ala Al Rajabi","is_ca":true},{"name":"Timothy S. Jayme","is_ca":true},{"name":"Yasmin Nasser","is_ca":true},{"name":"José G. Ferraz","is_ca":true},{"name":"Timothy E. Shutt","is_ca":true},{"name":"Jane Shearer","is_ca":true},{"name":"Derek M. McKay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01064166636027952,"gpt":0.2137156770957142,"spread":0.2030740107354347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001545302,0.0003272073,0.0002812948,0.0002508575,0.0001203088,0.0003195239,0.000124736,0.0003528306,0.0009112674],"category_scores_gemma":[0.0001875328,0.0001057942,0.0001745398,0.0001484493,0.0003023322,0.0001773356,0.0001699531,0.0005068047,0.0001715696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002067611,"about_ca_system_score_gemma":0.0001168146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009758997,"about_ca_topic_score_gemma":0.0002327498,"domain_scores_codex":[0.9999022,0.00001317954,0.00000916947,0.00003234032,0.00002476948,0.00001823609],"domain_scores_gemma":[0.9997593,0.00002556357,0.0001339083,0.00001861054,0.00001643579,0.0000461327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003065185,0.00004220552,0.00209973,0.0001388758,0.00001369967,0.0002389907,0.00001179189,0.00007066417,0.9916112,0.0001054045,0.00007197774,0.005288971],"study_design_scores_gemma":[0.0001012516,0.003686363,0.09718233,0.0001087602,0.0001436262,0.009415199,0.0001104069,0.002005525,0.8774288,0.0006373529,0.00915586,0.00002454974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771594,0.01073449,0.009158685,0.0004581301,0.00007717326,0.00007089452,0.0002646929,0.0002538876,0.001822564],"genre_scores_gemma":[0.9931625,0.003235785,0.0025,0.0001033122,0.00003687982,0.00002685419,0.0001949612,0.0000158331,0.0007237485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009112674,"threshold_uncertainty_score":0.00304848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2950306742","doi":"10.1016/j.jcmgh.2017.11.013","title":"Cftr Modulates Wnt/β-Catenin Signaling and Stem Cell Proliferation in Murine Intestine","year":2017,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Cystic Fibrosis Foundation","keywords":"Wnt signaling pathway; LGR5; Dishevelled; Cystic fibrosis transmembrane conductance regulator; Cell biology; Biology; Stem cell; Crypt; Adenomatous polyposis coli; Cell growth; Molecular biology; Signal transduction; Chemistry; Cystic fibrosis; Endocrinology; Frizzled; Biochemistry","authors":[{"name":"Ashlee M. Strubberg","is_ca":false},{"name":"Jinghua Liu","is_ca":false},{"name":"Nancy M. Walker","is_ca":false},{"name":"Casey D. Stefanski","is_ca":false},{"name":"R. John MacLeod","is_ca":true},{"name":"Scott T. Magness","is_ca":false},{"name":"Lane L. Clarke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01198977690514921,"gpt":0.2596127056563985,"spread":0.2476229287512493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002456939,0.0002884408,0.0002492553,0.0007105999,0.0001965485,0.0003475939,0.0001894586,0.0005967055,0.001653922],"category_scores_gemma":[0.0001306007,0.0002337415,0.0002519253,0.0002035872,0.0004323616,0.0003152803,0.000223276,0.0006002889,0.0003951521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004330323,"about_ca_system_score_gemma":0.0002195639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007666561,"about_ca_topic_score_gemma":0.001160038,"domain_scores_codex":[0.9996777,0.00005390973,0.00003364126,0.00005716157,0.00008958795,0.00008802532],"domain_scores_gemma":[0.9997557,0.00002420742,0.00009787556,0.00002355119,0.00002216385,0.00007651288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001330369,0.0000278015,0.0004208916,0.00002624163,0.000001872375,0.00005262552,0.00001357987,0.00003312511,0.998741,0.0000677123,0.00002700513,0.0004551392],"study_design_scores_gemma":[0.00005036336,0.0004851852,0.01486188,0.0000200761,0.00003245472,0.0004503755,0.00007537872,0.0006510073,0.9815512,0.00007438865,0.00174063,0.000007214386],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964339,0.00111167,0.0008752254,0.0001009991,0.00001377452,0.00002767936,0.0003369018,0.00005672848,0.001043147],"genre_scores_gemma":[0.9962227,0.000614866,0.0009056529,0.00005283637,0.000008436109,0.00004526123,0.0002611215,0.00001834982,0.00187064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001653922,"threshold_uncertainty_score":0.005532861,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2904937572","doi":"10.1016/j.jcmgh.2018.12.001","title":"TTC7A: Steward of Intestinal Health","year":2018,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Disease; Inflammatory bowel disease; Medicine; Enterocolitis; Immunodeficiency; Incidence (geometry); Primary immunodeficiency; Exome sequencing; Immunology; Phenotype; Internal medicine; Biology; Immune system; Genetics","authors":[{"name":"Sasha Jardine","is_ca":true},{"name":"Neel Dhingani","is_ca":true},{"name":"Aleixo M. Muise","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01639945947919572,"gpt":0.2670696991463055,"spread":0.2506702396671098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005254261,0.0006700503,0.0009171396,0.001953358,0.0003719018,0.001087026,0.0007802834,0.00139379,0.004213875],"category_scores_gemma":[0.001149625,0.0001958311,0.000410568,0.001313681,0.0005338768,0.001434736,0.0008279848,0.00235812,0.002410844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006815207,"about_ca_system_score_gemma":0.00133841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009747614,"about_ca_topic_score_gemma":0.001561617,"domain_scores_codex":[0.9997332,0.00004946206,0.00005255837,0.00004351014,0.0000923429,0.000028935],"domain_scores_gemma":[0.9995808,0.0001774568,0.00006019611,0.00001637929,0.0001163453,0.00004889705],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005587906,0.00002978302,0.000322461,0.008898129,0.0000711651,0.0003644499,0.00008758701,0.000158972,0.0007571998,0.006208513,0.06811829,0.9149275],"study_design_scores_gemma":[0.000006847678,0.00002619879,0.0004437649,0.002231581,0.00003388604,0.002220574,0.00004482402,0.00003278452,0.0001813802,0.001159961,0.9936097,0.000008547753],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001248739,0.9960024,0.0001986741,0.001194356,0.0006788418,0.000004858658,0.00002881298,0.00001659549,0.00175062],"genre_scores_gemma":[0.001072015,0.99609,0.000272278,0.0007703813,0.0004890959,0.000007001549,0.00005948695,0.000004895086,0.001234778],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004213875,"threshold_uncertainty_score":0.0140968,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4283274944","doi":"10.1016/j.jcmgh.2022.05.015","title":"Role of the Endocannabinoid System in the Regulation of Intestinal Homeostasis","year":2022,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cannabis and Cannabinoid Research","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; Hotchkiss Brain Institute; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Endocannabinoid system; Homeostasis; 2-Arachidonoylglycerol; Neuroscience; Biology; Medicine; Endocrinology; Internal medicine; Cannabinoid receptor; Receptor","authors":[{"name":"Hailey Cuddihey","is_ca":true},{"name":"Wallace K. MacNaughton","is_ca":true},{"name":"Keith A. Sharkey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01619309782697321,"gpt":0.2699373140806977,"spread":0.2537442162537245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002853949,0.0004155871,0.0006739108,0.001272017,0.0003288068,0.0007975321,0.0004541118,0.0006981163,0.003211153],"category_scores_gemma":[0.0003478661,0.0001142571,0.0003182358,0.001110548,0.0003838919,0.0006869189,0.0004949284,0.001064532,0.001487106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005449316,"about_ca_system_score_gemma":0.001231118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001244575,"about_ca_topic_score_gemma":0.001921033,"domain_scores_codex":[0.9998995,0.00001602736,0.00001319051,0.00001777861,0.00003859793,0.00001484136],"domain_scores_gemma":[0.9998976,0.00003935898,0.0000123145,0.000003748305,0.00003127774,0.00001579502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008737963,0.0000479351,0.0003107357,0.01425781,0.00009258997,0.0004701479,0.0001013392,0.0004102498,0.006151949,0.008918365,0.01817441,0.9509771],"study_design_scores_gemma":[0.00001014622,0.00006580816,0.001240079,0.002492025,0.00008249487,0.001972473,0.00009541449,0.00008900125,0.001120498,0.00396484,0.9888479,0.00001946718],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002580937,0.9974382,0.000169627,0.0003083677,0.0001386846,0.000003404382,0.00002038972,0.00000833841,0.001654727],"genre_scores_gemma":[0.001609029,0.9974076,0.00016934,0.0001051896,0.00008976945,0.000003594108,0.00001991393,0.000001045302,0.000594573],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003211153,"threshold_uncertainty_score":0.01074231,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4304893055","doi":"10.1016/j.jcmgh.2022.10.002","title":"Ethanol and its Nonoxidative Metabolites Promote Acute Liver Injury by Inducing ER Stress, Adipocyte Death, and Lipolysis","year":2022,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Alcohol Consumption and Health Effects","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institutes of Health Research; University of Alberta","funders":"National Institutes of Health; National Research Foundation of Korea; National Research Foundation","keywords":"Acetaldehyde; Lipolysis; Endocrinology; Internal medicine; Liver injury; Chemistry; Ethanol metabolism; Ethanol; Fatty liver; Alcoholic liver disease; Adipose tissue; Oxidative stress; Adipocyte; Biochemistry; Biology; Medicine","authors":[{"name":"Seol Hee Park","is_ca":false},{"name":"Wonhyo Seo","is_ca":false},{"name":"Mingjiang Xu","is_ca":false},{"name":"Bryan Mackowiak","is_ca":false},{"name":"Yuhong Lin","is_ca":false},{"name":"Yong He","is_ca":false},{"name":"Yaojie Fu","is_ca":false},{"name":"Seonghwan Hwang","is_ca":false},{"name":"Seung-Jin Kim","is_ca":false},{"name":"Yukun Guan","is_ca":false},{"name":"Dechun Feng","is_ca":false},{"name":"Liqing Yu","is_ca":false},{"name":"Richard Lehner","is_ca":true},{"name":"Suthat Liangpunsakul","is_ca":false},{"name":"Bin Gao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.019754480809508,"gpt":0.2855949168471275,"spread":0.2658404360376195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001287684,0.0004811717,0.0003086475,0.0003047292,0.0001173428,0.0002178184,0.0001460333,0.0002631502,0.001269885],"category_scores_gemma":[0.00006281063,0.0001504519,0.0004093686,0.0001979077,0.0002173328,0.0002498521,0.000318339,0.000441437,0.00019468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002455682,"about_ca_system_score_gemma":0.0001190071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000270002,"about_ca_topic_score_gemma":0.0007253834,"domain_scores_codex":[0.9998941,0.00001793056,0.00001218879,0.00002212335,0.00002439103,0.0000291457],"domain_scores_gemma":[0.9998715,0.000008477494,0.0000618491,0.00001210153,0.00001282088,0.00003319874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002193791,0.0002136185,0.003871727,0.0001361474,0.00006635598,0.0002479437,0.00002786279,0.00007696298,0.989155,0.00008921112,0.00005995306,0.003861396],"study_design_scores_gemma":[0.00009472718,0.003944125,0.08752599,0.00004013902,0.0001686902,0.001053994,0.0001625446,0.001051191,0.9037657,0.0002594141,0.001913532,0.00001987954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945377,0.002735196,0.001833231,0.0000844342,0.0000238927,0.00003287207,0.0001870568,0.00005394206,0.0005116626],"genre_scores_gemma":[0.9961067,0.001505523,0.001039669,0.00007974767,0.00001109991,0.00003111423,0.0002468846,0.000007048161,0.0009721788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001269885,"threshold_uncertainty_score":0.004248142,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3015694861","doi":"10.1016/j.jcmgh.2020.04.003","title":"Colitis-Induced Microbial Perturbation Promotes Postinflammatory Visceral Hypersensitivity","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Institut National de la Santé et de la Recherche Médicale; Canada Foundation for Innovation; Crohn's and Colitis Canada; Alberta Innovates; University of Calgary","keywords":"Medicine; Perturbation (astronomy); Colitis; Dermatology; Intensive care medicine; Internal medicine; Physics","authors":[{"name":"Nicolas Esquerre","is_ca":true},{"name":"Lilian Basso","is_ca":true},{"name":"Manon Defaye","is_ca":true},{"name":"Fernando Vicentini","is_ca":true},{"name":"Nina L. Cluny","is_ca":true},{"name":"Dominique Bihan","is_ca":true},{"name":"Simon A. Hirota","is_ca":true},{"name":"Alana Schick","is_ca":true},{"name":"Humberto Jijon","is_ca":true},{"name":"Ian A. Lewis","is_ca":true},{"name":"Markus B. Geuking","is_ca":true},{"name":"Keith A. Sharkey","is_ca":true},{"name":"Christophe Altier","is_ca":true},{"name":"Yasmin Nasser","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01238149409252804,"gpt":0.2122883343831175,"spread":0.1999068402905895,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001521212,0.0004655906,0.0003572616,0.0003145999,0.0001323648,0.000361014,0.0001340001,0.0003810254,0.001896124],"category_scores_gemma":[0.0001663822,0.0001534102,0.0003156466,0.0001865651,0.0003343987,0.000229012,0.000271625,0.000832593,0.000356913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002355761,"about_ca_system_score_gemma":0.000175134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001305769,"about_ca_topic_score_gemma":0.0002668127,"domain_scores_codex":[0.9997829,0.00003544529,0.00001896927,0.00004619623,0.0000455417,0.00007103096],"domain_scores_gemma":[0.9997016,0.000018955,0.000140163,0.00002553941,0.00001949926,0.00009421826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008008445,0.0001431235,0.001402556,0.0001027624,0.00001373946,0.000191625,0.00001478588,0.00004229471,0.9950646,0.00003218582,0.00005819279,0.002133395],"study_design_scores_gemma":[0.0002259367,0.009798839,0.1710684,0.0001139939,0.0001546952,0.003277636,0.000242585,0.001659979,0.8094011,0.0002334584,0.003798866,0.00002452939],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958364,0.001960983,0.001041548,0.0001170697,0.00003884243,0.00003560787,0.0001831272,0.0000893678,0.0006970832],"genre_scores_gemma":[0.9968485,0.001195756,0.0009260231,0.0001129306,0.00002661213,0.0000371692,0.0001876388,0.00001142872,0.0006538065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001896124,"threshold_uncertainty_score":0.006343126,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3041244286","doi":"10.1016/j.jcmgh.2020.07.003","title":"Muc2 Mucin and Nonmucin Microbiota Confer Distinct Innate Host Defense in Disease Susceptibility and Colonic Injury","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; McMaster University Medical Centre; Health Sciences Centre; University of Calgary","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada","keywords":"Mucin; Innate immune system; Immunology; Host (biology); Disease; Biology; Medicine; Immune system; Pathology; Genetics","authors":[{"name":"Aralia Leon‐Coria","is_ca":true},{"name":"Manish Kumar","is_ca":true},{"name":"Matthew L. Workentine","is_ca":true},{"name":"France Moreau","is_ca":true},{"name":"Michael G. Surette","is_ca":true},{"name":"Kris Chadee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008428552278979231,"gpt":0.2340068599276441,"spread":0.2255783076486649,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003880397,0.0003483858,0.0002716773,0.000354142,0.0001530493,0.0003948347,0.0001751615,0.0004415664,0.001280581],"category_scores_gemma":[0.000210242,0.0001639664,0.0002420495,0.0001569907,0.0004314164,0.000284813,0.0004540592,0.0005167846,0.0001248119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003109919,"about_ca_system_score_gemma":0.0003056629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003267347,"about_ca_topic_score_gemma":0.0005971418,"domain_scores_codex":[0.9997517,0.00006889361,0.00001825812,0.0000476554,0.00004341437,0.00007012102],"domain_scores_gemma":[0.9997092,0.00001634675,0.00008256291,0.00002828241,0.00001633183,0.00014727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007742659,0.00004256106,0.003326677,0.00002984628,0.000007363516,0.0001040845,0.00002340495,0.00001976975,0.9945548,0.0001494281,0.00001406165,0.0009537094],"study_design_scores_gemma":[0.00008040517,0.003135509,0.3419792,0.0000367632,0.00008523701,0.002984029,0.0003709754,0.001030888,0.648009,0.0003342416,0.001937027,0.000016698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984237,0.0006157777,0.000475766,0.00004383799,0.000005136305,0.00000635392,0.00004413268,0.00001190756,0.0003735283],"genre_scores_gemma":[0.9985943,0.0001823512,0.0006068571,0.00002561537,0.000005207731,0.0000114987,0.00007515131,0.000003946007,0.0004949332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001280581,"threshold_uncertainty_score":0.004283965,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4322721469","doi":"10.1016/j.jcmgh.2023.02.014","title":"Mimicking Tumor Cell Heterogeneity of Colorectal Cancer in a Patient-derived Organoid-Fibroblast Model","year":2023,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"HORIZON EUROPE Marie Sklodowska-Curie Actions; Childhood Cancer Canada; Magistrat der Stadt Wien; Bundesministerium für Bildung und Frauen; European Commission; German Network for Bioinformatics Infrastructure; Österreichische Forschungsförderungsgesellschaft; Österreichischen Akademie der Wissenschaften; Gesellschaft für Forschungsförderung Niederösterreich; Austrian Science Fund; International Max Planck Research School for Advanced Methods in Process and Systems Engineering; International Max Planck Research School for Environmental, Cellular and Molecular Microbiology","keywords":"Organoid; Colorectal cancer; Fibroblast; Cancer research; Tumor heterogeneity; Medicine; Cell; Tumor cells; Cancer; Oncology; Pathology; Biology; Internal medicine; Cell biology; Cell culture; Genetics","authors":[{"name":"Velina S. Atanasova","is_ca":false},{"name":"Crhistian de Jesus Cardona","is_ca":false},{"name":"Václav Hejret","is_ca":false},{"name":"Andreas Tiefenbacher","is_ca":false},{"name":"Theresia Mair","is_ca":false},{"name":"Loan Tran","is_ca":false},{"name":"Janette Pfneissl","is_ca":false},{"name":"Kristina Draganić","is_ca":false},{"name":"Carina Binder","is_ca":false},{"name":"Julijan Kabiljo","is_ca":false},{"name":"Janik Clement","is_ca":false},{"name":"Katharina Woeran","is_ca":false},{"name":"Barbara Neudert","is_ca":false},{"name":"Sabrina Wohlhaupter","is_ca":false},{"name":"Astrid D. Haase","is_ca":false},{"name":"Sandra Domazet","is_ca":false},{"name":"Markus Hengstschläger","is_ca":false},{"name":"Markus Mitterhauser","is_ca":false},{"name":"Leonhard Müllauer","is_ca":false},{"name":"Boris Tichý","is_ca":false},{"name":"Michael Bergmann","is_ca":false},{"name":"Gabriele Schweikert","is_ca":false},{"name":"Markus Hartl","is_ca":false},{"name":"Helmut Dolznig","is_ca":false},{"name":"Gerda Egger","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009612423373388754,"gpt":0.2399036478264611,"spread":0.2302912244530723,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000414769,0.0004308854,0.0003409624,0.0005038396,0.0002231062,0.0004266837,0.0003458648,0.0005310554,0.0009360813],"category_scores_gemma":[0.0002422649,0.0002049967,0.000425431,0.0003108513,0.0002158833,0.0002378552,0.0004226267,0.0005850786,0.0003955261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003699229,"about_ca_system_score_gemma":0.0003478326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001328706,"about_ca_topic_score_gemma":0.00198874,"domain_scores_codex":[0.9997482,0.00005067713,0.00001627959,0.00006871226,0.0000868572,0.00002926859],"domain_scores_gemma":[0.9997367,0.00006626256,0.00005308629,0.00005796735,0.00003098466,0.00005507271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001850076,0.0000700508,0.001395481,0.0001225062,0.00001916852,0.000645245,0.00008119311,0.002994643,0.9913686,0.0003874707,0.0001649584,0.002565812],"study_design_scores_gemma":[0.00007010737,0.001294208,0.01283729,0.00005001975,0.0001392617,0.005532288,0.000235037,0.03706016,0.9261028,0.0004770117,0.01614153,0.00006041577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9276858,0.002317705,0.06495264,0.0001677675,0.00006776486,0.0002118055,0.00130412,0.0003483916,0.002944116],"genre_scores_gemma":[0.9758421,0.0008890372,0.02071916,0.00005759878,0.000007719968,0.0001627267,0.0009688486,0.00003102794,0.001321803],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001328706,"threshold_uncertainty_score":0.003131509,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3159974931","doi":"10.1016/j.jcmgh.2021.04.010","title":"Creating a More Perfect Union: Modeling Intestinal Bacteria-Epithelial Interactions Using Organoids","year":2021,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada","keywords":"Organoid; Intestinal epithelium; Biology; Computational biology; Intestinal mucosa; Epithelium; Cell biology; Medicine; Genetics; Internal medicine","authors":[{"name":"Xiao Han","is_ca":true},{"name":"M Mslati","is_ca":true},{"name":"Emily Davies","is_ca":true},{"name":"Yan Chen","is_ca":true},{"name":"Joannie M. Allaire","is_ca":true},{"name":"Bruce A. Vallance","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0388740681537906,"gpt":0.322768666387036,"spread":0.2838945982332454,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009240108,0.0007152577,0.00124245,0.001138336,0.0002659576,0.001620732,0.0009566374,0.001467852,0.001863372],"category_scores_gemma":[0.0006582146,0.0004302676,0.000866914,0.0007507924,0.000755509,0.002299656,0.001089419,0.002287081,0.00125811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006658267,"about_ca_system_score_gemma":0.000941852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009166429,"about_ca_topic_score_gemma":0.00121354,"domain_scores_codex":[0.999747,0.00006942329,0.0000264432,0.0000423005,0.00009639645,0.0000183848],"domain_scores_gemma":[0.9997553,0.0001130047,0.00002600695,0.0000178553,0.00005769305,0.0000301257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001577821,0.0001427482,0.0004573584,0.03005983,0.000258182,0.0008067092,0.0005090453,0.008928751,0.04706939,0.05442668,0.03475659,0.8224269],"study_design_scores_gemma":[0.00002507419,0.0001504357,0.0002928429,0.00253801,0.0001503083,0.001042763,0.0001677879,0.001506416,0.009217281,0.007210426,0.9776519,0.00004680895],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001554232,0.9748902,0.01686799,0.001393004,0.0007291023,0.00004336577,0.0001012248,0.00009864024,0.004322211],"genre_scores_gemma":[0.009755966,0.972451,0.01401149,0.0007384918,0.0002078001,0.0000854804,0.0001921357,0.00003723835,0.00252046],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001863372,"threshold_uncertainty_score":0.006233573,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3094379051","doi":"10.1016/j.jcmgh.2020.10.010","title":"Nanoparticle-Mediated Delivery of 2-Deoxy-D-Glucose Induces Antitumor Immunity and Cytotoxicity in Liver Tumors in Mice","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Nanoplatforms for cancer theranostics","field":"Engineering","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Pancreas Centre (Canada)","funders":"Japan Society for the Promotion of Science","keywords":"Cytotoxicity; Immunity; Cancer research; Chemistry; Immunology; Medicine; Immune system; Biochemistry; In vitro","authors":[{"name":"Kyo Sasaki","is_ca":false},{"name":"Sohji Nishina","is_ca":true},{"name":"Akira Yamauchi","is_ca":false},{"name":"Kotaro Fukuda","is_ca":false},{"name":"Yuichi Hara","is_ca":false},{"name":"Masahiro Yamamura","is_ca":false},{"name":"Kensuke Egashira","is_ca":false},{"name":"Keisuke Hino","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008179220361040422,"gpt":0.1832384089567083,"spread":0.1750591885956678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000153875,0.0006218855,0.0003558149,0.0003783382,0.0001178822,0.0002337279,0.0002333369,0.0005773096,0.0008352267],"category_scores_gemma":[0.00007631439,0.0001886706,0.0003764548,0.0001577795,0.0003160224,0.0002597366,0.0001436751,0.0008072089,0.0002943728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003583048,"about_ca_system_score_gemma":0.0002452413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006219222,"about_ca_topic_score_gemma":0.0007461865,"domain_scores_codex":[0.9998271,0.00001770727,0.00001291167,0.00005261597,0.00004266876,0.00004708959],"domain_scores_gemma":[0.9998969,0.00001127757,0.00004123268,0.00001061269,0.00001014999,0.00002990002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003751522,0.0001891011,0.00009460228,0.00005487638,0.000008066254,0.00004049728,0.00001816715,0.0001826706,0.9973201,0.00006083636,0.00006870284,0.00158734],"study_design_scores_gemma":[0.00007762566,0.001623692,0.0007234691,0.000006038253,0.00002151235,0.00008812951,0.00001107678,0.001063278,0.9953514,0.0000279706,0.001001047,0.000004854155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877788,0.001496373,0.006850918,0.0002648538,0.0001214474,0.0001622507,0.0004929971,0.0004375085,0.002394942],"genre_scores_gemma":[0.9898318,0.0008534933,0.00423288,0.0001345682,0.00002267077,0.0002139054,0.0004616604,0.00004583494,0.004203164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008352267,"threshold_uncertainty_score":0.002794147,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200363170","doi":"10.1016/j.jcmgh.2021.12.012","title":"Gut-innervating TRPV1+ Neurons Drive Chronic Visceral Pain via Microglial P2Y12 Receptor","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Pain Mechanisms and Treatments","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hotchkiss Brain Institute; University of Calgary; Institute of Infection and Immunity; Alberta Children's Hospital","funders":"Canadian Institutes of Health Research; Alberta Children's Hospital Research Institute; Canada Research Chairs; Canadian Association of Gastroenterology; Crohn's and Colitis Canada; University of Calgary","keywords":"TRPV1; Chronic pain; Medicine; Neuroscience; Receptor; Biology; Internal medicine; Transient receptor potential channel","authors":[{"name":"Manon Defaye","is_ca":true},{"name":"Mircea Iftinca","is_ca":true},{"name":"Ahmed Hassan","is_ca":true},{"name":"Francina Agosti","is_ca":true},{"name":"Zizhen Zhang","is_ca":true},{"name":"Mélissa Cuménal","is_ca":true},{"name":"Gerald W. Zamponi","is_ca":true},{"name":"Christophe Altier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005972555604706644,"gpt":0.2185188091795079,"spread":0.2125462535748013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001555598,0.0003737906,0.0003367853,0.0001383431,0.0002287155,0.0003267961,0.0002622978,0.0004477939,0.002412946],"category_scores_gemma":[0.0001281818,0.0001645089,0.0003343229,0.0001088517,0.0003315706,0.0003248661,0.0002937104,0.0007314713,0.0004182728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000240356,"about_ca_system_score_gemma":0.0002217716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003209656,"about_ca_topic_score_gemma":0.000601612,"domain_scores_codex":[0.9997919,0.0000283732,0.00001524747,0.00003852688,0.00004163263,0.00008439959],"domain_scores_gemma":[0.999925,0.000008747083,0.00002985957,0.000007817017,0.00001085043,0.00001774301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004487988,0.00005277864,0.0002864288,0.000132515,0.000007765274,0.0001202529,0.00002558588,0.00006213408,0.9967119,0.0001244669,0.00009171408,0.00193576],"study_design_scores_gemma":[0.0001615511,0.002549337,0.02008425,0.00005247532,0.00009347049,0.001225732,0.0002233808,0.002125945,0.9686804,0.0004041533,0.004381626,0.00001770143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905306,0.002847924,0.004190773,0.0003215136,0.00005018534,0.0000476001,0.0002000432,0.000106221,0.001705245],"genre_scores_gemma":[0.994306,0.001412192,0.001835373,0.00009234264,0.00003021757,0.00008654156,0.0001187237,0.0000126092,0.002105942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002412946,"threshold_uncertainty_score":0.008072078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2397034582","doi":"10.1016/j.jcmgh.2016.05.013","title":"THBS2 Is a Candidate Modifier of Liver Disease Severity in Alagille Syndrome","year":2016,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Pediatric Hepatobiliary Diseases and Treatments","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Human Genome Research Institute; National Institutes of Health; Children's Hospital of Philadelphia; U.S. Department of Veterans Affairs","keywords":"JAG1; Alagille syndrome; Biology; Primary sclerosing cholangitis; Phenotype; Genome-wide association study; Notch signaling pathway; Locus (genetics); Cholestasis; Liver disease; Cancer research; Candidate gene; Bile duct; Exome; Genetics; Internal medicine; Endocrinology; Pathology; Disease; Gene; Medicine; Exome sequencing; Single-nucleotide polymorphism; Genotype","authors":[{"name":"Ellen Tsai","is_ca":false},{"name":"Melissa A. Gilbert","is_ca":false},{"name":"Christopher M. Grochowski","is_ca":false},{"name":"Lara A. Underkoffler","is_ca":false},{"name":"He Meng","is_ca":false},{"name":"Xiaojie Zhang","is_ca":false},{"name":"Michael M. Wang","is_ca":false},{"name":"Hailu Shitaye","is_ca":false},{"name":"Kurt D. Hankenson","is_ca":false},{"name":"David A. Piccoli","is_ca":false},{"name":"Henry C. Lin","is_ca":false},{"name":"Binita M. Kamath","is_ca":true},{"name":"Marcella Devoto","is_ca":false},{"name":"Nancy B. Spinner","is_ca":false},{"name":"Kathleen M. Loomes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005997543556659767,"gpt":0.2168574721077764,"spread":0.2108599285511166,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002353262,0.0007338959,0.0003483629,0.0007822381,0.0002363784,0.0003254132,0.0003271483,0.000585437,0.004294634],"category_scores_gemma":[0.0004664219,0.000179959,0.0003461241,0.0003654623,0.0002988335,0.000149397,0.0002291966,0.0004421508,0.0001612297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002213469,"about_ca_system_score_gemma":0.0002142165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006991252,"about_ca_topic_score_gemma":0.0007138565,"domain_scores_codex":[0.9997922,0.00005941268,0.0000238953,0.00005229957,0.0000502517,0.00002199251],"domain_scores_gemma":[0.9997254,0.00007287952,0.0001081292,0.000009676513,0.0000122509,0.00007164712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003608308,0.0001787587,0.3249282,0.0002678666,0.0004091378,0.0142062,0.0002408919,0.001026587,0.6386113,0.0009448468,0.0005825636,0.01499532],"study_design_scores_gemma":[0.0002175431,0.0007539863,0.8484007,0.0001209974,0.0008117082,0.03272686,0.000296281,0.005063683,0.1079916,0.0007212016,0.00285768,0.00003788247],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978058,0.000528986,0.0008614514,0.0001567859,0.00001493512,0.000008706132,0.0002165008,0.00003243165,0.0003745018],"genre_scores_gemma":[0.9984739,0.0001471914,0.0008468371,0.00003447669,0.00001070664,0.00000726815,0.0001507166,0.000007671778,0.0003211159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004294634,"threshold_uncertainty_score":0.01436698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1601890219","doi":"10.1016/j.jcmgh.2015.05.001","title":"Mutations in Plasmalemma Vesicle Associated Protein Result in Sieving Protein-Losing Enteropathy Characterized by Hypoproteinemia, Hypoalbuminemia, and Hypertriglyceridemia","year":2015,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Caveolin-1 and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Toronto; Hospital for Sick Children; SickKids Foundation","funders":"National Heart, Lung, and Blood Institute; Crohn's and Colitis Canada; Hospital for Sick Children; Canadian Association of Gastroenterology; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Hypoproteinemia; Hypoalbuminemia; Protein losing enteropathy; Exome sequencing; Enteropathy; Biology; Frameshift mutation; Exome; Lymphocytopenia; Pathology; Medicine; Genetics; Internal medicine; Molecular biology; Mutation; Gene; Disease","authors":[{"name":"Abdul Elkadri","is_ca":true},{"name":"Cornelia Thoeni","is_ca":true},{"name":"Sophie J. Deharvengt","is_ca":false},{"name":"Ryan Murchie","is_ca":true},{"name":"Conghui Guo","is_ca":true},{"name":"James Stavropoulos","is_ca":true},{"name":"Christian R. Marshall","is_ca":true},{"name":"Paul W. Wales","is_ca":true},{"name":"Robert Bandsma","is_ca":true},{"name":"Ernest Cutz","is_ca":true},{"name":"Chaim M. Roifman","is_ca":true},{"name":"David Chitayat","is_ca":true},{"name":"Yaron Avitzur","is_ca":true},{"name":"Radu V. Stan","is_ca":false},{"name":"Aleixo M. Muise","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008313878505344674,"gpt":0.2101275867002072,"spread":0.2018137081948625,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001514725,0.0007625532,0.0002612456,0.0004687039,0.0003328266,0.0002779695,0.0002113884,0.0005447195,0.001064273],"category_scores_gemma":[0.0004807769,0.0001937312,0.0003667953,0.0003592633,0.0004746176,0.0001626055,0.0004160618,0.0004823283,0.000222325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000187278,"about_ca_system_score_gemma":0.0001476733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005348147,"about_ca_topic_score_gemma":0.00077881,"domain_scores_codex":[0.9998455,0.00001611096,0.0000218728,0.00005111066,0.00003544274,0.00002986788],"domain_scores_gemma":[0.9997438,0.00008526439,0.00009297756,0.00001080193,0.00001264422,0.0000545742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007351449,0.0001527567,0.2959507,0.0002089361,0.0002633809,0.2527717,0.001078031,0.001046483,0.4264501,0.0007956005,0.001074677,0.01947245],"study_design_scores_gemma":[0.00005196707,0.0005266207,0.5044572,0.00005227256,0.0001528993,0.4284624,0.0004010918,0.001165787,0.06099087,0.0003383159,0.003365896,0.0000347828],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982729,0.0002083275,0.0008424513,0.00004469472,0.00001084642,0.000009483124,0.0001971911,0.00003472847,0.0003793788],"genre_scores_gemma":[0.9984428,0.0001696878,0.0008835064,0.00004493296,0.000009940167,0.000006159125,0.0001816754,0.0000128007,0.0002485644],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001064273,"threshold_uncertainty_score":0.003560364,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3090148470","doi":"10.1016/j.jcmgh.2020.09.013","title":"Crohn’s Disease Pathobiont Adherent-Invasive E coli Disrupts Epithelial Mitochondrial Networks With Implications for Gut Permeability","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; McGill University; University of Calgary","funders":"Canadian Institutes of Health Research; International Microbiome Centre, University of Calgary; University of Calgary","keywords":"Biology; Mitochondrion; Mitochondrial fission; Mitochondrial apoptosis-induced channel; Escherichia coli; Molecular biology; Cell biology; Biochemistry; Inner mitochondrial membrane","authors":[{"name":"Nicole L. Mancini","is_ca":true},{"name":"Sruthi Rajeev","is_ca":true},{"name":"Timothy S. Jayme","is_ca":true},{"name":"Arthur Wang","is_ca":true},{"name":"Åsa V. Keita","is_ca":false},{"name":"Matthew L. Workentine","is_ca":true},{"name":"Samira Hamed","is_ca":true},{"name":"Johan D. Söderholm","is_ca":false},{"name":"Fernando Lopes","is_ca":true},{"name":"Timothy E. Shutt","is_ca":true},{"name":"Jane Shearer","is_ca":true},{"name":"Derek M. McKay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01216414339244516,"gpt":0.2465028525239459,"spread":0.2343387091315007,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001180132,0.0002312991,0.0001822461,0.000177998,0.0001667502,0.0003410535,0.00007993426,0.0003794848,0.001041373],"category_scores_gemma":[0.0001198329,0.0001042215,0.0001764676,0.0001179214,0.0002082938,0.0001628449,0.0001933737,0.0005414478,0.0001782174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00025139,"about_ca_system_score_gemma":0.0001008667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002681135,"about_ca_topic_score_gemma":0.0004357467,"domain_scores_codex":[0.9998289,0.00003463848,0.00001655798,0.00003028422,0.00004065932,0.00004888965],"domain_scores_gemma":[0.9998955,0.00001398477,0.00003496719,0.00001086057,0.00001649342,0.00002833171],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002007212,0.0000496789,0.001490019,0.0000690992,0.00000852262,0.000245327,0.00002291948,0.00004953901,0.9961034,0.00006566432,0.0000578205,0.001637343],"study_design_scores_gemma":[0.00008629641,0.001762974,0.1167173,0.00005453526,0.00005718457,0.004596391,0.0003294672,0.002038721,0.8666921,0.000271121,0.007380475,0.00001348172],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964641,0.001622488,0.0008654378,0.0001672048,0.0000177328,0.00001623817,0.0001182288,0.00002198976,0.000706657],"genre_scores_gemma":[0.9970591,0.0008359377,0.001039693,0.0001029897,0.000008535835,0.00001860639,0.0002423192,0.00000342072,0.0006893564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001041373,"threshold_uncertainty_score":0.003483772,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4220818840","doi":"10.1016/j.jcmgh.2022.02.015","title":"Activation of Liver mTORC1 Protects Against NASH via Dual Regulation of VLDL-TAG Secretion and De Novo Lipogenesis","year":2022,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"mTORC1; Lipogenesis; Nonalcoholic fatty liver disease; Insulin resistance; Steatosis; Endocrinology; Internal medicine; Fatty liver; Biology; Lipid metabolism; PI3K/AKT/mTOR pathway; Chemistry; Insulin; Biochemistry; Medicine; Signal transduction","authors":[{"name":"Kahealani Uehara","is_ca":false},{"name":"Jaimarie Sostre‐Colón","is_ca":false},{"name":"Matthew Gavin","is_ca":false},{"name":"Dominic Santoleri","is_ca":false},{"name":"Kelly‐Ann Leonard","is_ca":true},{"name":"René L. Jacobs","is_ca":true},{"name":"Paul M. Titchenell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006613260488911537,"gpt":0.2033334981693187,"spread":0.1967202376804072,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002234441,0.0006662126,0.0006044979,0.0004685337,0.0002014506,0.0003890633,0.0003264666,0.0003312003,0.001765205],"category_scores_gemma":[0.000164328,0.000192784,0.0003250774,0.0001819732,0.0004360896,0.0002823149,0.0002836104,0.000861151,0.0003944594],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003205002,"about_ca_system_score_gemma":0.0004452225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000339196,"about_ca_topic_score_gemma":0.000701662,"domain_scores_codex":[0.9998569,0.00002402922,0.00001846652,0.00003118919,0.00002598428,0.00004331637],"domain_scores_gemma":[0.9998665,0.000009880482,0.00005175981,0.0000129978,0.00001617547,0.00004269291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003911156,0.0004115069,0.000619431,0.0002721856,0.00006169952,0.00005098988,0.00002535845,0.0003025028,0.9834869,0.0002574179,0.0004231049,0.01017778],"study_design_scores_gemma":[0.0007614432,0.005835877,0.01033283,0.00005664777,0.0001802573,0.0003451034,0.00006832569,0.002006221,0.9743825,0.0002191029,0.005788544,0.00002311592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906474,0.003476585,0.002992587,0.0004063757,0.0001032029,0.00008107942,0.0004775627,0.0003853547,0.001429816],"genre_scores_gemma":[0.9911481,0.002120865,0.003457106,0.0001860977,0.0000580948,0.0001837747,0.0007822947,0.00005511436,0.002008555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001765205,"threshold_uncertainty_score":0.005905151,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4321595463","doi":"10.1016/j.jcmgh.2023.02.007","title":"Psyllium Fiber Protects Against Colitis Via Activation of Bile Acid Sensor Farnesoid X Receptor","year":2023,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Food composition and properties","field":"Nursing","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health; Crohn's and Colitis Foundation","keywords":"Farnesoid X receptor; Psyllium; Colitis; Bile acid; Cholesterol 7 alpha-hydroxylase; Chemistry; Internal medicine; Enterohepatic circulation; Cholestyramine; Endocrinology; Pharmacology; Biochemistry; Biology; Medicine; Cholesterol; Nuclear receptor; Food science; Dietary fiber; Transcription factor","authors":[{"name":"Alexis Bretin","is_ca":false},{"name":"Jun Zou","is_ca":false},{"name":"Beng San Yeoh","is_ca":false},{"name":"Vu L. Ngo","is_ca":false},{"name":"Shawn Winer","is_ca":true},{"name":"Daniel A. Winer","is_ca":true},{"name":"Lavanya Reddivari","is_ca":false},{"name":"Michael Pellizzon","is_ca":false},{"name":"William A. Walters","is_ca":false},{"name":"Andrew D. Patterson","is_ca":false},{"name":"Ruth E. Ley","is_ca":false},{"name":"Benoît Chassaing","is_ca":false},{"name":"Matam Vijay–Kumar","is_ca":false},{"name":"Andrew T. Gewirtz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01002348028485125,"gpt":0.2164902170347335,"spread":0.2064667367498822,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009836309,0.0003923061,0.0003164381,0.0002170404,0.0001096511,0.0002157681,0.0001402566,0.0002839283,0.001796406],"category_scores_gemma":[0.00008655139,0.0001294753,0.0002665069,0.0001085277,0.0002068605,0.0002301439,0.0001862915,0.0005630028,0.0002640925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001753927,"about_ca_system_score_gemma":0.0001503392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002944427,"about_ca_topic_score_gemma":0.0004724467,"domain_scores_codex":[0.9999113,0.00001284163,0.000007728869,0.00001873583,0.0000174147,0.00003190731],"domain_scores_gemma":[0.9999216,0.000006017664,0.00003477392,0.000006933347,0.000007291359,0.0000234056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001218045,0.00008123938,0.0003320216,0.0000568431,0.0000125733,0.00003473706,0.000007417009,0.00003386167,0.9968222,0.00003184516,0.00004379348,0.001325392],"study_design_scores_gemma":[0.0002027023,0.005922429,0.022671,0.00002490162,0.0000850116,0.0002741676,0.00009190447,0.0006444706,0.9671104,0.0001254535,0.002833062,0.00001453128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969254,0.001185907,0.0008843802,0.0001301302,0.00003493501,0.00001732441,0.0002417579,0.00005606635,0.0005240591],"genre_scores_gemma":[0.9953812,0.001207707,0.000848897,0.0001068207,0.00001506619,0.00003709435,0.000422564,0.00001213644,0.00196856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001796406,"threshold_uncertainty_score":0.006009519,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897080090","doi":"10.1016/j.jcmgh.2018.10.002","title":"Oral Glucose Mobilizes Triglyceride Stores From the Human Intestine","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Kensington Health; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Chylomicron; Enterocyte; Triglyceride; Internal medicine; Ingestion; Endocrinology; Small intestine; Biology; Lipid metabolism; Intestinal mucosa; Lipoprotein; Chemistry; Very low-density lipoprotein; Cholesterol; Medicine","authors":[{"name":"Changting Xiao","is_ca":true},{"name":"Priska Stahel","is_ca":true},{"name":"Alicia L. Carreiro","is_ca":false},{"name":"Yu-Han Hung","is_ca":false},{"name":"Satya Dash","is_ca":true},{"name":"Ian Bookman","is_ca":true},{"name":"Kimberly K. Buhman","is_ca":false},{"name":"Gary F. Lewis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008314730974421699,"gpt":0.2295655681418642,"spread":0.2212508371674425,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009988353,0.0003858956,0.0003588779,0.0001804012,0.0001021685,0.0002633892,0.000149569,0.0002096305,0.0016901],"category_scores_gemma":[0.0001647241,0.0001119499,0.000228255,0.0001842998,0.0001506682,0.0001450278,0.0002424845,0.0003545152,0.0002748016],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001617533,"about_ca_system_score_gemma":0.0001201757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004918374,"about_ca_topic_score_gemma":0.0005071003,"domain_scores_codex":[0.999921,0.00001596841,0.000005220063,0.00002065697,0.000019344,0.0000178458],"domain_scores_gemma":[0.9999543,0.000009218315,0.00001523891,0.000006346134,0.00000437454,0.0000103701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.03338626,0.00135236,0.01363159,0.0005017265,0.0001475791,0.0004829399,0.00007706967,0.0001751542,0.8871208,0.00006379157,0.0007053084,0.06235544],"study_design_scores_gemma":[0.002704746,0.06205365,0.4550379,0.0002325329,0.0008706711,0.002633387,0.0006941754,0.002394335,0.4601245,0.0003595528,0.0128419,0.00005258585],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99507,0.003647926,0.0003511981,0.00008394845,0.00004706562,0.00002951339,0.000178791,0.00003278495,0.0005587217],"genre_scores_gemma":[0.994959,0.002663896,0.0006431771,0.0001614802,0.00004189238,0.00005609762,0.0005741882,0.00001289998,0.0008873136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0016901,"threshold_uncertainty_score":0.005653918,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2979710977","doi":"10.1016/j.jcmgh.2019.10.002","title":"RIPK1 Mediates TNF-Induced Intestinal Crypt Apoptosis During Chronic NF-κB Activation","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; Deutsche Krebshilfe; Genentech; National Cancer Institute; National Institutes of Health; GlaxoSmithKline; Deutsche Forschungsgemeinschaft; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; European Commission; Canadian Institutes of Health Research; American Cancer Society","keywords":"RIPK1; Tumor necrosis factor alpha; Apoptosis; Programmed cell death; Kinase; Chemistry; IκB kinase; Cancer research; Cell biology; Biology; Molecular biology; NF-κB; Immunology; Necroptosis; Biochemistry","authors":[{"name":"Jerry Wong","is_ca":false},{"name":"Ricard Garcia‐Carbonell","is_ca":false},{"name":"Matija Zelic","is_ca":false},{"name":"Samuel B. Ho","is_ca":false},{"name":"Brigid S. Boland","is_ca":false},{"name":"S. Yao","is_ca":false},{"name":"Shalin A. Desai","is_ca":false},{"name":"Soumita Das","is_ca":false},{"name":"Núria Planell","is_ca":false},{"name":"Philip A. Harris","is_ca":false},{"name":"Joan Font-Burgada","is_ca":false},{"name":"Koji Taniguchi","is_ca":false},{"name":"John Bertin","is_ca":false},{"name":"Azucena Salas","is_ca":false},{"name":"Manolis Pasparakis","is_ca":false},{"name":"Pete J. Gough","is_ca":false},{"name":"Michelle A. Kelliher","is_ca":false},{"name":"Michael Karin","is_ca":false},{"name":"Mónica Gumá","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005654707051150907,"gpt":0.2023565891353889,"spread":0.196701882084238,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002829695,0.0005166762,0.0002971159,0.0001692896,0.00022214,0.000370031,0.000324797,0.0003508661,0.002756128],"category_scores_gemma":[0.0001858706,0.0001364586,0.0004379446,0.0001170714,0.0003117343,0.0004375982,0.0002477898,0.000936845,0.00124335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004376876,"about_ca_system_score_gemma":0.000235295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001152791,"about_ca_topic_score_gemma":0.000125564,"domain_scores_codex":[0.9998516,0.0000213581,0.00001639517,0.00003088366,0.00002478753,0.00005486278],"domain_scores_gemma":[0.999801,0.00001938633,0.00008658968,0.0000228035,0.0000233881,0.00004682398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009460461,0.00007686318,0.0004503361,0.0002733026,0.0000149055,0.0001582304,0.00002223676,0.00008433979,0.9963432,0.0001568175,0.0001259025,0.00134787],"study_design_scores_gemma":[0.000168197,0.0007738954,0.01505897,0.00005500477,0.00005971583,0.001791207,0.0000669416,0.001266524,0.9757304,0.0002916052,0.004724415,0.00001323544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9748908,0.01564864,0.005992005,0.0003395622,0.00009982265,0.00006540003,0.0007779703,0.0001625604,0.002023168],"genre_scores_gemma":[0.9928629,0.002898749,0.001767955,0.00007233935,0.00003155303,0.00007191741,0.0008191168,0.00001966083,0.001455819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002756128,"threshold_uncertainty_score":0.009220123,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3107265620","doi":"10.1016/j.jcmgh.2020.11.006","title":"Intestinal Phospholipid Disequilibrium Initiates an ER Stress Response That Drives Goblet Cell Necroptosis and Spontaneous Colitis in Mice","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Clinical Nutrition and Gastroenterology","field":"Nursing","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Necroptosis; Goblet cell; Cell biology; Disequilibrium; Unfolded protein response; Colitis; Chemistry; Programmed cell death; Medicine; Immunology; Biology; Apoptosis; Pathology; Epithelium; Biochemistry; Endoplasmic reticulum; Surgery","authors":[{"name":"John P. Kennelly","is_ca":true},{"name":"Stephanie Carlin","is_ca":true},{"name":"Tingting Ju","is_ca":false},{"name":"Jelske N. van der Veen","is_ca":true},{"name":"Randal C. Nelson","is_ca":true},{"name":"Jean Buteau","is_ca":false},{"name":"Aducio Thiesen","is_ca":true},{"name":"Caroline Richard","is_ca":true},{"name":"Benjamin P. Willing","is_ca":false},{"name":"René L. Jacobs","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01488313170748333,"gpt":0.2450552466946752,"spread":0.2301721149871918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003358517,0.0008983244,0.0004605894,0.001140547,0.0003499366,0.000619114,0.0003492559,0.0009399179,0.005640737],"category_scores_gemma":[0.0001906071,0.000505593,0.000593846,0.0004632443,0.0005973519,0.0006482685,0.0006341176,0.001318672,0.001845519],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005037411,"about_ca_system_score_gemma":0.0002848073,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002756161,"about_ca_topic_score_gemma":0.0006102994,"domain_scores_codex":[0.9995185,0.00009272773,0.00005094131,0.0001313187,0.000087079,0.0001194083],"domain_scores_gemma":[0.9994319,0.00002526159,0.0002835848,0.00005536457,0.00002996397,0.0001739405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007295666,0.0001369155,0.0005897289,0.00007144218,0.00001136644,0.0001966042,0.00002221914,0.00003261187,0.9968305,0.0001503473,0.0000952244,0.001133388],"study_design_scores_gemma":[0.0002612621,0.002515124,0.02548544,0.00008676483,0.00008341579,0.002318844,0.0001566778,0.0007222619,0.9629307,0.0002434313,0.005176046,0.00002002055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879423,0.001793396,0.004002776,0.0004459729,0.00008269725,0.0001218081,0.00196244,0.0005333858,0.003115126],"genre_scores_gemma":[0.9816094,0.001753174,0.004438885,0.00025727,0.00005801777,0.0002209356,0.002055635,0.0001692267,0.009437439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005640737,"threshold_uncertainty_score":0.01887017,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3176533716","doi":"10.1016/j.jcmgh.2021.06.011","title":"Prebiotic Enriched Exclusive Enteral Nutrition Suppresses Colitis via Gut Microbiome Modulation and Expansion of Anti-inflammatory T Cells in a Mouse Model of Colitis","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; CH.I.L.D. Foundation; Crohn's and Colitis Canada; Michael Smith Health Research BC","keywords":"Colitis; Inflammatory bowel disease; Immune system; Medicine; Gut flora; Immunology; Bifidobacterium; Ulcerative colitis; FOXP3; Microbiome; Adoptive cell transfer; Gastroenterology; Internal medicine; Microbiology; T cell; Lactobacillus; Biology; Disease","authors":[{"name":"Genelle Lunken","is_ca":true},{"name":"Kevin Tsai","is_ca":true},{"name":"Alana Schick","is_ca":true},{"name":"Daniel J. Lisko","is_ca":true},{"name":"Laura Cook","is_ca":true},{"name":"Bruce A. Vallance","is_ca":true},{"name":"Kevan Jacobson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005429201749777703,"gpt":0.2105895056451305,"spread":0.2051603038953528,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002597874,0.0006972928,0.0004686597,0.0005774235,0.0002106319,0.0003448838,0.000267932,0.0005758135,0.001472166],"category_scores_gemma":[0.0001176487,0.0002647833,0.00032481,0.0002286261,0.0004579331,0.0003325567,0.0002307174,0.001491716,0.000276199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002117844,"about_ca_system_score_gemma":0.0003178395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002336829,"about_ca_topic_score_gemma":0.0006955373,"domain_scores_codex":[0.9997577,0.00004526556,0.00002656456,0.00005073139,0.00005576612,0.00006397496],"domain_scores_gemma":[0.9997932,0.00001266175,0.0000644731,0.00001991973,0.00001435016,0.00009545598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002079956,0.0009773951,0.0004117452,0.00009995218,0.00001139211,0.00009574166,0.00003169162,0.0001156568,0.9932373,0.00008304333,0.00009470957,0.002761398],"study_design_scores_gemma":[0.0006185757,0.01865471,0.01268617,0.0000791164,0.0001282602,0.0007241718,0.0001685068,0.001215007,0.9603336,0.0001673681,0.005205739,0.00001885933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958931,0.0009698523,0.001291554,0.0001712939,0.00006727594,0.00007735036,0.0003791343,0.0001018985,0.001048444],"genre_scores_gemma":[0.9887903,0.001405841,0.003356357,0.0001934508,0.00004477445,0.0002387441,0.0006548243,0.0000428081,0.005272863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001472166,"threshold_uncertainty_score":0.004924893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2990370852","doi":"10.1016/j.jcmgh.2019.11.012","title":"Analysis of Flagellin-Specific Adaptive Immunity Reveals Links to Dysbiosis in Patients With Inflammatory Bowel Disease","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Society of Intestinal Research; BC Children's Hospital; McGill University; University of British Columbia","funders":"Canadian Institutes of Health Research; Takeda Pharmaceutical Company; Crohn's and Colitis Foundation; Pfizer Canada; Merck; Bristol-Myers Squibb Canada; Gilead Sciences; Canada Research Chairs; Crohn's and Colitis Foundation of America","keywords":"Flagellin; Dysbiosis; Inflammatory bowel disease; Acquired immune system; Immunity; Immunology; Disease; Medicine; Immune system; Gut flora; Internal medicine","authors":[{"name":"Laura Cook","is_ca":true},{"name":"Daniel J. Lisko","is_ca":true},{"name":"May Q. Wong","is_ca":true},{"name":"Rosa V. Garcia","is_ca":true},{"name":"Megan E. Himmel","is_ca":true},{"name":"Ernest G. Seidman","is_ca":true},{"name":"Brian Bressler","is_ca":true},{"name":"Megan K. Levings","is_ca":true},{"name":"Theodore S. Steiner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003628014417606597,"gpt":0.1928690073562025,"spread":0.1892409929385959,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003253713,0.0002782988,0.0003630084,0.0008020794,0.0003034622,0.0004881274,0.0001846102,0.0004013551,0.001747809],"category_scores_gemma":[0.0009141929,0.0001581368,0.0002484088,0.0006972662,0.0002222586,0.0002703585,0.0003755508,0.0003823937,0.0001932952],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001898211,"about_ca_system_score_gemma":0.00009542374,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005472688,"about_ca_topic_score_gemma":0.0007440765,"domain_scores_codex":[0.9997258,0.00006642571,0.00003515279,0.00007858274,0.00003857448,0.00005543484],"domain_scores_gemma":[0.9994302,0.0001068735,0.0002754432,0.00002847636,0.00006051274,0.00009839118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006548069,0.00004916398,0.9898107,0.00004335161,0.00005427403,0.0001640948,0.00008886238,0.00004210495,0.004262708,0.00001861957,0.0001249789,0.004686297],"study_design_scores_gemma":[0.000007530315,0.0001595577,0.9984706,0.00001013224,0.00002683835,0.0004526638,0.0001231453,0.000133745,0.0003621762,0.00003379636,0.0002168797,0.000002828536],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985124,0.0007838866,0.0001054127,0.00004895065,0.000006128873,0.000005601389,0.0001896525,0.00000634927,0.0003415963],"genre_scores_gemma":[0.999376,0.000163623,0.0001527214,0.00003074537,0.000009869958,0.000005611978,0.0001706346,0.000001969096,0.00008886954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001747809,"threshold_uncertainty_score":0.005847037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3161117753","doi":"10.1016/j.jcmgh.2021.05.001","title":"PGI2 Inhibits Intestinal Epithelial Permeability and Apoptosis to Alleviate Colitis","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Université de Nantes; Centre National de la Recherche Scientifique; Institut National de la Santé et de la Recherche Médicale; Centre hospitalier universitaire Sainte-Justine; Agence Nationale de la Recherche; Infrastructures en Biologie Santé et Agronomie","keywords":"Apoptosis; Intestinal permeability; Colitis; Cancer research; Permeability (electromagnetism); Chemistry; Cell biology; Medicine; Gastroenterology; Biology; Biochemistry","authors":[{"name":"Camille Pochard","is_ca":false},{"name":"Jacques Gonzalès","is_ca":false},{"name":"Anne Bessard","is_ca":false},{"name":"Maxime M. Mahé","is_ca":false},{"name":"Arnaud Bourreille","is_ca":false},{"name":"Nicolas Cénac","is_ca":false},{"name":"Anne Jarry","is_ca":false},{"name":"Emmanuel Coron","is_ca":false},{"name":"J. Podevin","is_ca":false},{"name":"G. Meurette","is_ca":false},{"name":"Michel Neunlist","is_ca":false},{"name":"Malvyne Rolli‐Derkinderen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01319042226400454,"gpt":0.2285031300055649,"spread":0.2153127077415603,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006973112,0.0002051375,0.0001449526,0.000138668,0.00009217108,0.0001267786,0.0001008054,0.0001423766,0.002084354],"category_scores_gemma":[0.0000601737,0.00004079592,0.0001214421,0.00009360244,0.0001914165,0.00008683965,0.00008673488,0.0005181711,0.000285479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001410734,"about_ca_system_score_gemma":0.0001811289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002264266,"about_ca_topic_score_gemma":0.000505156,"domain_scores_codex":[0.9999654,0.00000705566,0.000001799742,0.000004564039,0.000008899912,0.000012259],"domain_scores_gemma":[0.9999676,0.000004447409,0.000007686684,0.000002994524,0.000004571986,0.00001286792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002376229,0.0004732535,0.001513822,0.0004428773,0.00003243827,0.0002250855,0.00005209879,0.0002117627,0.9726692,0.0004075256,0.0007332593,0.02086236],"study_design_scores_gemma":[0.0005024483,0.007417296,0.03193736,0.00005541881,0.00008173912,0.001221594,0.0001520627,0.001442509,0.9422089,0.0003511386,0.01461959,0.00001005721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9862528,0.007364917,0.001601071,0.0003789844,0.0001140387,0.00003481106,0.0002685854,0.0001097203,0.003875175],"genre_scores_gemma":[0.992287,0.00300212,0.001097052,0.00009034934,0.00004575596,0.00003864284,0.0002130637,0.000007871536,0.003218158],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002084354,"threshold_uncertainty_score":0.006972849,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3009391993","doi":"10.1016/j.jcmgh.2020.02.007","title":"A Novel Organoid Model of Damage and Repair Identifies HNF4α as a Critical Regulator of Intestinal Epithelial Regeneration","year":2020,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Liver physiology and pathology","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Organoid; Regeneration (biology); Intestinal epithelium; Cell biology; Regulator; Biology; Intestinal mucosa; Stem cell; Immunology; Epithelium; Medicine; Genetics; Internal medicine","authors":[{"name":"Paula S. Montenegro-Miranda","is_ca":false},{"name":"Jonathan H. M. van der Meer","is_ca":false},{"name":"Christine M. Jones","is_ca":true},{"name":"Sander Meisner","is_ca":false},{"name":"Jacqueline L.M. Vermeulen","is_ca":false},{"name":"Jan Köster","is_ca":false},{"name":"Manon E. Wildenberg","is_ca":false},{"name":"Jarom Heijmans","is_ca":false},{"name":"François Boudreau","is_ca":true},{"name":"Agnès Ribeiro","is_ca":false},{"name":"Gijs R. van den Brink","is_ca":false},{"name":"Vanesa Muncan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01635482399249187,"gpt":0.2443294302087191,"spread":0.2279746062162272,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002497351,0.0005424194,0.0004193734,0.0008094963,0.000270692,0.0003756876,0.0003562339,0.0004878044,0.002173916],"category_scores_gemma":[0.0001215595,0.0001773612,0.0006050074,0.0003843573,0.0004592674,0.0002600949,0.0003926563,0.001050563,0.0006125858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000592226,"about_ca_system_score_gemma":0.0004808284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001081417,"about_ca_topic_score_gemma":0.001754029,"domain_scores_codex":[0.9997913,0.00002214556,0.00001723813,0.00006620213,0.00006789692,0.00003508733],"domain_scores_gemma":[0.9997762,0.00002985951,0.00006322639,0.00003715927,0.0000253951,0.00006818426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001179303,0.00001399456,0.0001669433,0.00003238224,0.000005495809,0.00004196404,0.00001127471,0.0001069581,0.9987418,0.00006839472,0.00004870802,0.0006441775],"study_design_scores_gemma":[0.00001611791,0.0003368413,0.003497955,0.00000860785,0.00003031275,0.0002562469,0.00004662715,0.0006696456,0.9914463,0.00006620825,0.003618144,0.000007063655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9491424,0.003618218,0.03521129,0.0003964907,0.0001908368,0.0001887476,0.006683449,0.000753432,0.003815109],"genre_scores_gemma":[0.960586,0.001821801,0.01937279,0.00017227,0.00001216684,0.0001975586,0.008391657,0.00009758971,0.00934829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002173916,"threshold_uncertainty_score":0.007272542,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3125737167","doi":"10.1016/j.jcmgh.2021.01.019","title":"SMN Depleted Mice Offer a Robust and Rapid Onset Model of Nonalcoholic Fatty Liver Disease","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; National Institutes of Health; Canadian Institutes of Health Research; Tenovus; Spinal Muscular Atrophy UK; Cure SMA; Vanderbilt University; Muscular Dystrophy Association","keywords":"Nonalcoholic fatty liver disease; Fatty liver; Disease; Liver disease; Medicine; Pathology; Gastroenterology","authors":[{"name":"Marc‐Olivier Deguise","is_ca":true},{"name":"Chantal A. Pileggi","is_ca":true},{"name":"Yves De Repentigny","is_ca":true},{"name":"Ariane Beauvais","is_ca":true},{"name":"Alexandra Tierney","is_ca":true},{"name":"Lucia Chehadé","is_ca":true},{"name":"Jean Michaud","is_ca":true},{"name":"Maica Llavero-Hurtado","is_ca":false},{"name":"Douglas J. Lamont","is_ca":false},{"name":"Abdelmadjid Atrih","is_ca":false},{"name":"Thomas M. Wishart","is_ca":false},{"name":"Thomas H. Gillingwater","is_ca":false},{"name":"Bernard L. Schneider","is_ca":false},{"name":"Mary‐Ellen Harper","is_ca":true},{"name":"Simon H. Parson","is_ca":false},{"name":"Rashmi Kothary","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01794807891910339,"gpt":0.2215465433850502,"spread":0.2035984644659468,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005163151,0.001252425,0.0005239402,0.001050727,0.0004392136,0.0005330541,0.0005384422,0.001017925,0.005183585],"category_scores_gemma":[0.0001734824,0.00042526,0.000415496,0.000261905,0.0005599329,0.0006549494,0.0005682078,0.001478896,0.001548566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003437747,"about_ca_system_score_gemma":0.0003509386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002611014,"about_ca_topic_score_gemma":0.001054254,"domain_scores_codex":[0.9996426,0.000061684,0.00004934244,0.00008823504,0.00009273659,0.00006546768],"domain_scores_gemma":[0.9996663,0.00002384118,0.0001045506,0.00004325094,0.0000272927,0.000134799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001311704,0.000588724,0.001279066,0.0001414365,0.00002483073,0.0003207685,0.00005985397,0.000161093,0.9894441,0.0008778096,0.0007342762,0.00505619],"study_design_scores_gemma":[0.0006543605,0.005819439,0.01890262,0.0001603994,0.0001514287,0.003868196,0.0002180456,0.002060352,0.9318438,0.0009031579,0.03536022,0.00005787196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9626367,0.00282257,0.01992305,0.0008581555,0.0002406345,0.0004470283,0.004734518,0.001414844,0.006922534],"genre_scores_gemma":[0.928751,0.003291046,0.03016457,0.0005929921,0.000118523,0.001264777,0.006227589,0.0004227174,0.02916678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005183585,"threshold_uncertainty_score":0.01734078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3159836411","doi":"10.1016/j.jcmgh.2021.04.017","title":"Fasting Hormones Synergistically Induce Amino Acid Catabolism Genes to Promote Gluconeogenesis","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Metabolism, Diabetes, and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; Azrieli Foundation; Israel Science Foundation; Abisch-Frenkel-Stiftung; International Development Research Centre","keywords":"Catabolism; Glucagon; Endocrinology; Internal medicine; CREB; Biology; Gluconeogenesis; Chromatin immunoprecipitation; Glucose homeostasis; Hormone; Corticosterone; Insulin; Gene expression; Biochemistry; Gene; Transcription factor; Metabolism; Insulin resistance; Medicine; Promoter","authors":[{"name":"Noga Korenfeld","is_ca":false},{"name":"Maya Finkel","is_ca":false},{"name":"Nufar Buchshtab","is_ca":false},{"name":"Meirav Bar‐Shimon","is_ca":false},{"name":"Meital Charni‐Natan","is_ca":false},{"name":"Ido Goldstein","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007363263246486751,"gpt":0.2183108710809025,"spread":0.2109476078344158,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001111305,0.0004044185,0.0001976407,0.0002206941,0.000169366,0.000220583,0.0001107713,0.0001157451,0.00265463],"category_scores_gemma":[0.00009944911,0.0001498484,0.0003704895,0.0001164134,0.0002552643,0.0001139769,0.0002928109,0.000339618,0.000333749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002663415,"about_ca_system_score_gemma":0.0001658189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004045664,"about_ca_topic_score_gemma":0.00113415,"domain_scores_codex":[0.999843,0.00001845133,0.00001007183,0.00005788715,0.00002764758,0.00004282994],"domain_scores_gemma":[0.9998432,0.00003147751,0.00003930804,0.00001666999,0.00002181625,0.00004738968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001901957,0.00001083456,0.001090608,0.0000430993,0.000005663905,0.00007248222,0.00001782688,0.00001708722,0.9970938,0.0000428462,0.00006680994,0.001348727],"study_design_scores_gemma":[0.00004630258,0.0008921623,0.1604494,0.00004682815,0.00007222267,0.0006961041,0.0002194621,0.0005577886,0.8292984,0.0002446488,0.00745561,0.00002105149],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887158,0.003513462,0.003812455,0.0001876369,0.0001227006,0.0000385761,0.0007833313,0.0001868056,0.002639259],"genre_scores_gemma":[0.9921028,0.0009219521,0.002933363,0.0001734211,0.00004948547,0.00005980381,0.0009281155,0.00003691158,0.002794207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00265463,"threshold_uncertainty_score":0.008880675,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2800189225","doi":"10.1016/j.jcmgh.2018.01.012","title":"siRNA Library Screening Identifies a Druggable Immune-Signature Driving Esophageal Adenocarcinoma Cell Growth","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Cancer research; Druggability; Biology; Medicine; Gene; Genetics","authors":[{"name":"Shane P. Duggan","is_ca":true},{"name":"Catherine Garry","is_ca":false},{"name":"Fiona M. Behan","is_ca":false},{"name":"Sinead Phipps","is_ca":false},{"name":"Hiromi Kudo","is_ca":false},{"name":"Murat Kirca","is_ca":false},{"name":"Abdul Zaheer","is_ca":false},{"name":"Sarah A. McGarrigle","is_ca":false},{"name":"John V. Reynolds","is_ca":false},{"name":"Robert Goldin","is_ca":false},{"name":"Steve E. Kalloger","is_ca":true},{"name":"David F. Schaeffer","is_ca":true},{"name":"Aideen Long","is_ca":false},{"name":"Jessica Strid","is_ca":false},{"name":"Dermot Kelleher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004035963957576754,"gpt":0.1873460386487142,"spread":0.1833100746911374,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002346975,0.0005663524,0.0004811445,0.0004136486,0.0001700346,0.0004671873,0.0002085193,0.0004097934,0.001390757],"category_scores_gemma":[0.0002094125,0.0001703556,0.0003825821,0.0002272112,0.0002175579,0.0001188145,0.0002307717,0.0003443745,0.0006801867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004615038,"about_ca_system_score_gemma":0.0002505826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004594463,"about_ca_topic_score_gemma":0.001183771,"domain_scores_codex":[0.9997573,0.00002590364,0.00002594641,0.00007894714,0.00007087663,0.00004096247],"domain_scores_gemma":[0.9998732,0.00003861539,0.00002903315,0.00001624436,0.00002484507,0.00001804695],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004047205,0.0000219684,0.0002078902,0.00003832025,0.000007595935,0.00002852691,0.000006512513,0.0001277328,0.9974711,0.00004885113,0.00005878011,0.001942346],"study_design_scores_gemma":[0.00001113647,0.0002302535,0.001776144,0.000003657858,0.00003182395,0.0001001,0.000008022785,0.001188205,0.994871,0.00001844089,0.001757971,0.000003199224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9693612,0.002743357,0.01961777,0.0001939858,0.00007237352,0.0002315493,0.002143216,0.0007512702,0.004885232],"genre_scores_gemma":[0.9794925,0.001307124,0.01116825,0.0002100723,0.00001181733,0.0002224647,0.00291653,0.0001076686,0.004563581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001390757,"threshold_uncertainty_score":0.00465256,"prediction_status":"machine_predicted_unvalidated"},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W3120602695","doi":"10.1016/j.jcmgh.2020.12.013","title":"Preventing Colitis-Associated Colon Cancer With Antioxidants: A Systematic Review","year":2021,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Vitamin C and Antioxidants Research","field":"Nursing","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Canadian Cancer Society","keywords":"Medicine; Colorectal cancer; Colitis; Cancer; Internal medicine; Gastroenterology; Oncology","authors":[{"name":"Thergiory Irrazábal","is_ca":true},{"name":"Bhupesh Kumar Thakur","is_ca":true},{"name":"Kenneth Croitoru","is_ca":true},{"name":"Alberto Martín","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01790556287906109,"gpt":0.3121209001575857,"spread":0.2942153372785246,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001071602,0.0009419691,0.003077473,0.003653132,0.0003126084,0.001052346,0.001086448,0.001089267,0.005339111],"category_scores_gemma":[0.004123048,0.0003544615,0.002502399,0.004012425,0.000293348,0.0009814557,0.0006637179,0.0006875739,0.0004497705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000847397,"about_ca_system_score_gemma":0.003033219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003818127,"about_ca_topic_score_gemma":0.009987449,"domain_scores_codex":[0.9994851,0.0001342624,0.0001625867,0.0000629046,0.0001229296,0.00003211211],"domain_scores_gemma":[0.9981674,0.001187938,0.0003283412,0.00002146924,0.0002399146,0.00005501479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0002359561,0.00003423341,0.0003662541,0.7248998,0.002497855,0.0001118843,0.00009398154,0.0001559421,0.0002705095,0.0004461971,0.009277857,0.2616096],"study_design_scores_gemma":[0.0003129923,0.0004118304,0.005277203,0.7327546,0.03014391,0.001230422,0.0002501836,0.00015588,0.0003944245,0.0008203264,0.2281887,0.00005948837],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001453022,0.9994573,0.00002382312,0.0000904734,0.00005519458,0.00001697016,0.00005546844,0.000002354549,0.0001532408],"genre_scores_gemma":[0.0008455323,0.9988523,0.00006285213,0.0001004868,0.00002858862,0.00001568052,0.00003911102,6.492758e-7,0.00005488054],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005339111,"threshold_uncertainty_score":0.01786113,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2889678507","doi":"10.1016/j.jcmgh.2018.09.004","title":"The Loss of ATRX Increases Susceptibility to Pancreatic Injury and Oncogenic KRAS in Female But Not Male Mice","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Robarts Clinical Trials; Children's Hospital of Western Ontario; Children’s Health Research Institute; Western University","funders":"Medical Research Council; Canadian Association of Gastroenterology; Cancer Research Society","keywords":"ATRX; KRAS; Cancer research; Biology; Pancreatic cancer; Cancer; Pathology; Medicine; Mutation; Gene; Colorectal cancer; Genetics","authors":[{"name":"C. C. Young","is_ca":true},{"name":"Ryan Baker","is_ca":true},{"name":"Christopher J. Howlett","is_ca":true},{"name":"Todd Hryciw","is_ca":true},{"name":"Joshua Herman","is_ca":true},{"name":"Douglas R. Higgs","is_ca":false},{"name":"Richard J. Gibbons","is_ca":false},{"name":"Howard C. Crawford","is_ca":false},{"name":"Arthur Brown","is_ca":true},{"name":"Christopher L. Pin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0132450766988495,"gpt":0.2919848311989167,"spread":0.2787397545000672,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002784307,0.0005727829,0.0003032771,0.0009356051,0.0002104532,0.000355635,0.0002458205,0.0005307822,0.007433961],"category_scores_gemma":[0.0002102204,0.0002835196,0.0003833484,0.0001984834,0.0004448262,0.0003324604,0.0003345489,0.001059664,0.0008147078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001836882,"about_ca_system_score_gemma":0.0001790092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000182156,"about_ca_topic_score_gemma":0.000385425,"domain_scores_codex":[0.9995926,0.00007448558,0.00004954659,0.00011313,0.00009172416,0.00007843803],"domain_scores_gemma":[0.999383,0.0000667808,0.0002548098,0.00006074751,0.00002662032,0.0002080574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003076977,0.00007929046,0.001574956,0.00002472323,0.000009275845,0.0001046004,0.00001593432,0.00001414449,0.9962246,0.0001099945,0.00007497097,0.001459827],"study_design_scores_gemma":[0.00004435048,0.0009976656,0.03319964,0.00001574492,0.00005581321,0.002376867,0.0000667903,0.0001733964,0.9608509,0.0000829551,0.002123874,0.00001208415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923663,0.0008367473,0.002944161,0.0003270334,0.00006324108,0.00002804117,0.0008357536,0.0001891476,0.002409576],"genre_scores_gemma":[0.9915618,0.0005270565,0.001638901,0.0001387559,0.00002680725,0.00005627099,0.0006804133,0.0001015004,0.005268472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007433961,"threshold_uncertainty_score":0.02486902,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2964780775","doi":"10.1016/j.jcmgh.2019.07.005","title":"TRPV6 and Cav1.3 Mediate Distal Small Intestine Calcium Absorption Before Weaning","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Magnesium in Health and Disease","field":"Nursing","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Novo Nordisk Fonden; Deutsche Forschungsgemeinschaft; Stollery Children’s Hospital Foundation; Sundhed og Sygdom, Det Frie Forskningsråd; Women and Children's Health Research Institute; Universität des Saarlandes","keywords":"Weaning; TRPV6; Calcium; Calcium metabolism; Absorption (acoustics); Small intestine; Chemistry; Medicine; Endocrinology; Internal medicine; Materials science","authors":[{"name":"Megan R. Beggs","is_ca":true},{"name":"Justin J. Lee","is_ca":true},{"name":"Kai Busch","is_ca":false},{"name":"Ahsan Raza","is_ca":false},{"name":"Henrik Dimke","is_ca":false},{"name":"Petra Weißgerber","is_ca":false},{"name":"Jutta Engel","is_ca":false},{"name":"Veit Flockerzi","is_ca":false},{"name":"R. Todd Alexander","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008015150374535549,"gpt":0.2261594664768691,"spread":0.2181443161023335,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003384384,0.0003329837,0.0004786539,0.0002382655,0.0003164472,0.0005457813,0.000476759,0.0008183233,0.003546288],"category_scores_gemma":[0.0008097914,0.0002393954,0.0003443008,0.00007619303,0.000535178,0.0005876612,0.0005886565,0.001028334,0.0007181218],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005333537,"about_ca_system_score_gemma":0.0005640672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006617731,"about_ca_topic_score_gemma":0.0009604105,"domain_scores_codex":[0.9997644,0.00003038507,0.00001169373,0.00005525173,0.00006503784,0.000073266],"domain_scores_gemma":[0.9994152,0.00007922325,0.0001610866,0.00002958257,0.00009668453,0.0002181932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00292694,0.0001165124,0.009169486,0.0002358085,0.00002243541,0.0004113068,0.0001858555,0.00008218585,0.9712737,0.0007231944,0.0006039774,0.01424861],"study_design_scores_gemma":[0.0003352525,0.003799849,0.4840183,0.0003300206,0.0001726862,0.002573768,0.001348126,0.002057899,0.4886168,0.004335581,0.01235193,0.0000596297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9786167,0.006556331,0.009323764,0.001003712,0.000170627,0.00005387565,0.0004758905,0.0002185502,0.003580489],"genre_scores_gemma":[0.9898169,0.001067671,0.001698486,0.0001985641,0.00004898102,0.00009563241,0.0002603478,0.00006438323,0.006749111],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003546288,"threshold_uncertainty_score":0.01186353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389332068","doi":"10.1016/j.jcmgh.2023.11.012","title":"Vasoactive Intestinal Polypeptide Plays a Key Role in the Microbial-Neuroimmune Control of Intestinal Motility","year":2023,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; AstraZeneca","keywords":"Vasoactive intestinal peptide; Enteric nervous system; Biology; Motility; Cholinergic; Gastric emptying; Gastrointestinal function; Acetylcholine; Immunology; Internal medicine; Endocrinology; Cell biology; Neuropeptide; Receptor; Medicine; Stomach","authors":[{"name":"Xiaopeng Bai","is_ca":true},{"name":"Giada De Palma","is_ca":true},{"name":"Elisa Boschetti","is_ca":false},{"name":"Yuichiro Nishiharo","is_ca":true},{"name":"Jun Lü","is_ca":true},{"name":"Chiko Shimbori","is_ca":true},{"name":"Anna Costanzini","is_ca":false},{"name":"Zarwa Saqib","is_ca":true},{"name":"Narjis Kraïmi","is_ca":true},{"name":"Sacha Sidani","is_ca":true},{"name":"Siegfried Hapfelmeier","is_ca":false},{"name":"Andrew J. Macpherson","is_ca":false},{"name":"Elena F. Verdú","is_ca":true},{"name":"Roberto De Giorgio","is_ca":false},{"name":"Stephen M. Collins","is_ca":true},{"name":"Přemysl Berčík","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009161035518782867,"gpt":0.2252266188951959,"spread":0.216065583376413,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002379411,0.0003910597,0.0003051941,0.0001728688,0.0001593919,0.0003543387,0.0001983129,0.0002926326,0.001181064],"category_scores_gemma":[0.0002027846,0.00007822015,0.0001782784,0.0001353157,0.0004853582,0.0001963095,0.0002686227,0.0004210201,0.0001780878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000193644,"about_ca_system_score_gemma":0.0001811042,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002122621,"about_ca_topic_score_gemma":0.0001580548,"domain_scores_codex":[0.999878,0.00003874994,0.000008593939,0.00002570579,0.0000195767,0.00002938181],"domain_scores_gemma":[0.9998342,0.00003166574,0.00005595887,0.000007822751,0.00002190533,0.00004853156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002519283,0.0001792363,0.01387343,0.001166689,0.00009050049,0.001915638,0.0001048981,0.0003134412,0.9318774,0.0009556201,0.0005440565,0.04645988],"study_design_scores_gemma":[0.0005151422,0.0135669,0.6220707,0.0004517724,0.0004627704,0.009199344,0.001157348,0.002766598,0.3176615,0.002570061,0.02951492,0.00006287039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8775824,0.11047,0.005950587,0.0009180434,0.0002867217,0.00005547249,0.0003367054,0.0001239657,0.004275987],"genre_scores_gemma":[0.9832444,0.01422634,0.001288622,0.00012653,0.0001306755,0.00002845989,0.0001083214,0.000006366632,0.000840279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001181064,"threshold_uncertainty_score":0.003951073,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2176734385","doi":"10.1016/j.jcmgh.2015.11.001","title":"New and Unexpected Biological Functions for the Src-Homology 2 Domain-Containing Phosphatase SHP-2 in the Gastrointestinal Tract","year":2015,"lang":"en","type":"review","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Cancer research; Biology; Proto-oncogene tyrosine-protein kinase Src; Protein kinase B; Wnt signaling pathway; Protein tyrosine phosphatase; Receptor tyrosine kinase; Tyrosine kinase; Cell biology; Signal transduction","authors":[{"name":"Geneviève Coulombe","is_ca":true},{"name":"Nathalie Rivard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03051601416763023,"gpt":0.2855788855550049,"spread":0.2550628713873747,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003887265,0.0004970244,0.0007175233,0.001351848,0.0001940721,0.0007193849,0.0004238611,0.0006165713,0.002069757],"category_scores_gemma":[0.0004181249,0.0001548106,0.0003100543,0.001262438,0.0003575237,0.0009866661,0.0006411811,0.001253563,0.0008919457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003296536,"about_ca_system_score_gemma":0.0008640651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004073148,"about_ca_topic_score_gemma":0.0009415066,"domain_scores_codex":[0.9998918,0.00001434758,0.00001741483,0.0000233813,0.00003999255,0.00001304542],"domain_scores_gemma":[0.9998491,0.00006210015,0.000026576,0.000004614084,0.00003693177,0.00002066944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001046804,0.00003942557,0.0007209149,0.01685248,0.0001539771,0.0007207218,0.00009276978,0.0003056256,0.008085712,0.004756184,0.0202325,0.947935],"study_design_scores_gemma":[0.00001711849,0.0001173162,0.002620182,0.001741541,0.0002189415,0.004934677,0.0001078287,0.0001117918,0.001747698,0.002805269,0.9855506,0.00002693055],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003577701,0.9981319,0.0002166375,0.0003583752,0.0001448596,0.000002543731,0.00002235762,0.000007532939,0.0007581035],"genre_scores_gemma":[0.00125694,0.9977127,0.0001835454,0.0001624583,0.000149927,0.000002904316,0.00003755102,0.000001118502,0.000492965],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002069757,"threshold_uncertainty_score":0.006924093,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3151546070","doi":"10.1016/j.jcmgh.2021.03.008","title":"Loss of SMAD4 Is Sufficient to Promote Tumorigenesis in a Model of Dysplastic Barrett’s Esophagus","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"National Health and Medical Research Council; University of Melbourne; Department of Health and Human Services, State Government of Victoria; Medical Research Council; Marshfield Clinic Research Foundation; Victorian Cancer Agency; U.S. Department of Health and Human Services","keywords":"Esophagus; Barrett's esophagus; Carcinogenesis; Medicine; Internal medicine; Gastroenterology; Adenocarcinoma; Cancer","authors":[{"name":"Jovana Gotovac","is_ca":false},{"name":"Tanjina Kader","is_ca":false},{"name":"Julia V. Milne","is_ca":false},{"name":"Kenji M. Fujihara","is_ca":false},{"name":"Luis E. Lara Gonzalez","is_ca":false},{"name":"Kylie L. Gorringe","is_ca":false},{"name":"Sangeetha Kalimuthu","is_ca":true},{"name":"Madawa Jayawardana","is_ca":false},{"name":"Wayne A. Phillips","is_ca":false},{"name":"Nicholas J. Clemons","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01237585185769242,"gpt":0.2609518154270584,"spread":0.248575963569366,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002574282,0.0005704524,0.0003430531,0.0005188195,0.000213982,0.0003286147,0.0003545962,0.0004341293,0.002160658],"category_scores_gemma":[0.0001427447,0.000281094,0.0003921786,0.0001797884,0.0004048017,0.0002342515,0.0002633194,0.0008933783,0.0004723645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003683304,"about_ca_system_score_gemma":0.0003012857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004491414,"about_ca_topic_score_gemma":0.0008271963,"domain_scores_codex":[0.9997589,0.00004671425,0.00003320051,0.00004617574,0.00006714034,0.00004784668],"domain_scores_gemma":[0.9996965,0.0000525768,0.00009678897,0.00003844305,0.00002264958,0.00009305744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000217235,0.00007727174,0.0001141441,0.00003119409,0.000006351089,0.00003289688,0.000008194142,0.00004350301,0.9990587,0.00004142509,0.00001929507,0.0003499254],"study_design_scores_gemma":[0.00003827824,0.000730861,0.001772068,0.000006783156,0.00002546486,0.0001497874,0.00002967381,0.0006933605,0.9952484,0.00003049922,0.001270604,0.00000410013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995116,0.0008650582,0.002061079,0.0001517896,0.0000532514,0.00005682417,0.0004745286,0.0001219282,0.001099444],"genre_scores_gemma":[0.9879827,0.001028858,0.003491845,0.00009254192,0.00001530882,0.0001214438,0.0008838534,0.00006323594,0.006320198],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002160658,"threshold_uncertainty_score":0.007228136,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4291116994","doi":"10.1016/j.jcmgh.2022.08.001","title":"Sex-Dependent Hepatoprotective Role of IL-22 Receptor Signaling in Non-Alcoholic Fatty Liver Disease-Related Fibrosis","year":2022,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Psoriasis: Treatment and Pathogenesis","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Clinical Research Institute; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Fatty liver; Alcoholic liver disease; Disease; Fibrosis; Medicine; Liver fibrosis; Receptor; Internal medicine; Cirrhosis","authors":[{"name":"Mohamed N. Abdelnabi","is_ca":true},{"name":"Manuel Flores Molina","is_ca":true},{"name":"Geneviève Soucy","is_ca":true},{"name":"Vincent Quoc‐Huy Trinh","is_ca":true},{"name":"Nathalie Bédard","is_ca":true},{"name":"Sabrina Mazouz","is_ca":true},{"name":"Nathalie Jouvet","is_ca":true},{"name":"Jessica Dion","is_ca":true},{"name":"Sarah Tran","is_ca":true},{"name":"Marc Bilodeau","is_ca":true},{"name":"Jennifer L. Estall","is_ca":true},{"name":"Naglaa H. Shoukry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00546717447712724,"gpt":0.1878426272045103,"spread":0.182375452727383,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002393842,0.0002171917,0.0002242467,0.0002877585,0.0001256676,0.0002542175,0.0001071361,0.0001296185,0.002404263],"category_scores_gemma":[0.0002518825,0.00009104569,0.0002255894,0.0001105379,0.0001533509,0.0001394532,0.0001487273,0.0002479013,0.0003834862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001023527,"about_ca_system_score_gemma":0.0001548669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001905915,"about_ca_topic_score_gemma":0.0003526534,"domain_scores_codex":[0.9998815,0.00002827388,0.000008866567,0.00003160502,0.00002532681,0.00002445293],"domain_scores_gemma":[0.9998003,0.00001969865,0.00008648621,0.00001828019,0.00002832907,0.00004690368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003914504,0.0002303526,0.1375032,0.0002563723,0.0001443155,0.001069482,0.0002064013,0.000157339,0.8132432,0.0004396972,0.000884642,0.04195051],"study_design_scores_gemma":[0.0001001654,0.001171916,0.9146922,0.00003480093,0.0001328189,0.002675933,0.000205437,0.0005977616,0.07554715,0.0003226287,0.004497581,0.00002168043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907827,0.005428597,0.001114223,0.000225866,0.0000431703,0.00001584694,0.0007285996,0.00004464588,0.001616175],"genre_scores_gemma":[0.9960148,0.001432855,0.0004122303,0.0001040809,0.00003567112,0.00002511728,0.0004160233,0.00001446447,0.00154468],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002404263,"threshold_uncertainty_score":0.00804311,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768923125","doi":"10.1016/j.jcmgh.2017.11.001","title":"The Endosomal Protein Endotubin Is Required for Enterocyte Differentiation","year":2017,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Cancer Institute; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; University of Arizona; University of Arizona Cancer Center; Macalester College; Howard Hughes Medical Institute","keywords":"Enterocyte; Endocytic cycle; Cell biology; Microvillus; Endocytosis; Endosome; Biology; Villin; Apical membrane; Apical cell; Small intestine; Cell; Epithelium; Endocrinology; Biochemistry; Actin; Intracellular","authors":[{"name":"Christopher M. Cox","is_ca":false},{"name":"Ruifeng Lu","is_ca":false},{"name":"Kaan Salcin","is_ca":true},{"name":"Jean M. Wilson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008488286066659854,"gpt":0.2224687941623339,"spread":0.213980508095674,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009508021,0.0003208885,0.0002497009,0.0001694183,0.0001891448,0.0003824304,0.0002423486,0.0002998152,0.001466882],"category_scores_gemma":[0.0001957945,0.0001405498,0.0001928655,0.0001224751,0.0002475756,0.0001997866,0.0005343446,0.0005244866,0.0008273078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002994539,"about_ca_system_score_gemma":0.0002470173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004652629,"about_ca_topic_score_gemma":0.000577813,"domain_scores_codex":[0.9998614,0.00001870585,0.0000176741,0.00003097957,0.0000435471,0.00002777023],"domain_scores_gemma":[0.9996983,0.00003852357,0.0001101562,0.00002198319,0.00003723332,0.00009390112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006017163,0.000004139459,0.0003254157,0.00001712255,0.000001599991,0.0001600409,0.000004834002,0.0000252639,0.9987952,0.00006518563,0.00001642663,0.0005246694],"study_design_scores_gemma":[0.00001413681,0.0000687275,0.01742296,0.00001120807,0.00001326447,0.001610419,0.00004969237,0.0008498721,0.9755181,0.00006873058,0.004366002,0.000006895034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860095,0.001809389,0.009181865,0.0001252098,0.00003101622,0.00001978714,0.0006622225,0.000158539,0.0020024],"genre_scores_gemma":[0.991232,0.0007045755,0.003131034,0.00004194779,0.000005798079,0.00002369607,0.001131177,0.00008198547,0.003647896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001466882,"threshold_uncertainty_score":0.004907191,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4212798424","doi":"10.1016/j.jcmgh.2022.02.011","title":"Glucagon-Like Peptide-2 Stimulates S-Phase Entry of Intestinal Lgr5+ Stem Cells","year":2022,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Diabetes Treatment and Management","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Muscular Dystrophy Canada","funders":"Banting and Best Diabetes Centre, University of Toronto; Canadian Institutes of Health Research; Novo Nordisk; Novo Nordisk Fonden; University of Toronto; Lunds Universitet; Canadian Association of Gastroenterology","keywords":"LGR5; Stem cell; Biology; Cell cycle; Glucagon-like peptide-2; Internal medicine; Endocrinology; Intestinal epithelium; Cell biology; Molecular biology; Cell; Cancer stem cell; Epithelium; Biochemistry; Medicine; Peptide","authors":[{"name":"Maegan E. Chen","is_ca":true},{"name":"Setareh Malekian Naeini","is_ca":true},{"name":"Arjuna Srikrishnaraj","is_ca":true},{"name":"Daniel J. Drucker","is_ca":true},{"name":"Zivit Fesler","is_ca":true},{"name":"Patricia L. Brubaker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00898717945186504,"gpt":0.2326760549056534,"spread":0.2236888754537884,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008244911,0.0002366229,0.0001433715,0.0001640133,0.000058445,0.0001749205,0.00007798272,0.0001452873,0.001740283],"category_scores_gemma":[0.00005687168,0.00006644738,0.0001575813,0.00007847395,0.0001698891,0.0001333469,0.0001430917,0.0003078123,0.0002188098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001923157,"about_ca_system_score_gemma":0.0001277215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002635663,"about_ca_topic_score_gemma":0.000641197,"domain_scores_codex":[0.9999475,0.000008932183,0.000004848884,0.00001131104,0.00001370302,0.00001366686],"domain_scores_gemma":[0.9999462,0.000007363972,0.00001514802,0.000004347417,0.000004273943,0.00002265922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002173172,0.00002193142,0.0004116822,0.00005192505,0.000003344953,0.00004176025,0.000008981051,0.0000262528,0.9973887,0.00003844974,0.00006183147,0.001727856],"study_design_scores_gemma":[0.00006769505,0.001161924,0.02527622,0.00001933442,0.000019996,0.0002190957,0.00007770681,0.000558527,0.9693467,0.00004421057,0.003205183,0.000003408691],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961753,0.001226145,0.0008842392,0.00008952047,0.00002760728,0.00001320407,0.0002000824,0.00006366972,0.001320242],"genre_scores_gemma":[0.9961573,0.0006194719,0.0009305244,0.0001009199,0.00001578684,0.00002610917,0.0002931232,0.00001127098,0.001845453],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001740283,"threshold_uncertainty_score":0.005821824,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3204948040","doi":"10.1016/j.jcmgh.2021.09.017","title":"Rab9 Mediates Pancreatic Autophagy Switch From Canonical to Noncanonical, Aggravating Experimental Pancreatitis","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health; U.S. Department of Veterans Affairs","keywords":"Autophagy; ATG5; Cell biology; Autophagosome; Pancreatitis; Biology; Internal medicine; Medicine; Apoptosis; Biochemistry","authors":[{"name":"Olga A. Mareninova","is_ca":false},{"name":"Dustin L. Dillon","is_ca":false},{"name":"Carli J. Wightman","is_ca":false},{"name":"Iskandar Yakubov","is_ca":false},{"name":"Toshimasa Takahashi","is_ca":true},{"name":"Herbert Y. Gaisano","is_ca":true},{"name":"Keith Munson","is_ca":false},{"name":"Masaki Ohmuraya","is_ca":false},{"name":"David W. Dawson","is_ca":false},{"name":"Ilya Gukovsky","is_ca":false},{"name":"Anna S. Gukovskaya","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007786074046003461,"gpt":0.2528061882136018,"spread":0.2450201141675984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002062674,0.0002955745,0.0003089719,0.0001879814,0.0001556467,0.0002680261,0.0001700711,0.0002564855,0.002218938],"category_scores_gemma":[0.0001666433,0.0001312521,0.000324051,0.0001393331,0.0002674713,0.0003215874,0.0002383937,0.0008644072,0.0003840396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002660816,"about_ca_system_score_gemma":0.0001950308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001004386,"about_ca_topic_score_gemma":0.0001319975,"domain_scores_codex":[0.9998691,0.0000245236,0.00001708785,0.00002216474,0.00001929953,0.00004780361],"domain_scores_gemma":[0.9998823,0.00001320289,0.00002882548,0.00002027084,0.00001034262,0.00004494332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001716223,0.000189786,0.0009751339,0.0001113277,0.00001355378,0.0003138327,0.00002531498,0.00005665976,0.9944877,0.0002426351,0.0001394426,0.00172841],"study_design_scores_gemma":[0.0001540127,0.00160483,0.02034662,0.00002290174,0.00006274391,0.002034202,0.0001294142,0.001252208,0.9708374,0.0002618594,0.003283191,0.00001061991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974533,0.0009211153,0.0005667896,0.0001044276,0.0000328574,0.00002449507,0.0001145353,0.00004809074,0.0007345278],"genre_scores_gemma":[0.9974455,0.0006945718,0.000434572,0.0000589057,0.00001509669,0.00005282308,0.0002719651,0.000009794835,0.00101689],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002218938,"threshold_uncertainty_score":0.007423043,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3119232027","doi":"10.1016/j.jcmgh.2020.12.012","title":"Norovirus-Specific CD8+ T Cell Responses in Human Blood and Tissues","year":2021,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Pancreas Centre (Canada)","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Deutsche Forschungsgemeinschaft; Wellcome Trust; University of Pennsylvania","keywords":"Biology; Epitope; CD8; Immune system; Immunology; Cytotoxic T cell; Virology; Immunity; T cell; Cellular immunity; Antibody; Genetics; In vitro","authors":[{"name":"Ajinkya Pattekar","is_ca":false},{"name":"L Mayer","is_ca":false},{"name":"Chi Wai Lau","is_ca":false},{"name":"Chengyang Liu","is_ca":false},{"name":"Olesya Palko","is_ca":false},{"name":"Meenakshi Bewtra","is_ca":false},{"name":"Lisa C. Lindesmith","is_ca":true},{"name":"Paul D. Brewer-Jensen","is_ca":false},{"name":"Ralph S. Baric","is_ca":false},{"name":"Michael R. Betts","is_ca":false},{"name":"Ali Naji","is_ca":false},{"name":"E. John Wherry","is_ca":false},{"name":"Vesselin T. Tomov","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01693735728673937,"gpt":0.2788805781799057,"spread":0.2619432208931664,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002051492,0.000237143,0.0001847883,0.0002236999,0.0001420197,0.0003157799,0.0001300314,0.0003309289,0.003369723],"category_scores_gemma":[0.0002839391,0.0001270919,0.0001111971,0.0001594325,0.0001249711,0.0001122427,0.0001867655,0.0003057361,0.0008204432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001268948,"about_ca_system_score_gemma":0.0001258597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003965739,"about_ca_topic_score_gemma":0.0003698244,"domain_scores_codex":[0.9998327,0.00004326235,0.000009465271,0.00006811935,0.000019945,0.00002647439],"domain_scores_gemma":[0.9998962,0.00004487943,0.00001235604,0.0000138314,0.00001651046,0.00001610618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001673171,0.0001903632,0.01611017,0.0002230718,0.00001546315,0.0005327325,0.0002536548,0.0002804002,0.9504723,0.0001968288,0.0007711666,0.02928067],"study_design_scores_gemma":[0.0004366615,0.008568652,0.2289813,0.000204128,0.0001545965,0.01087907,0.001049732,0.007167493,0.7089336,0.001292415,0.03229368,0.00003855279],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860213,0.002517177,0.004619681,0.0001222516,0.00004835069,0.0001215636,0.0006049225,0.0001425857,0.005802224],"genre_scores_gemma":[0.9929969,0.000774045,0.002472634,0.000237296,0.00004072997,0.0001676218,0.001057379,0.00001844073,0.002234978],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003369723,"threshold_uncertainty_score":0.01127285,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2898338366","doi":"10.1016/j.jcmgh.2018.10.011","title":"Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics","year":2018,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Heart Institute; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Canadian Institutes of Health Research; Fonds de Recherche du Québec - Santé; Fondation du Grand défi Pierre Lavoie; E-Rare","keywords":"Epigenomics; Chromatin; Biology; Bisulfite sequencing; Epigenetics; DNA methylation; Epigenome; Cell biology; Phenotype; Transcriptome; Genetics; Gene; Gene expression","authors":[{"name":"Natacha Gosset","is_ca":true},{"name":"Lisa‐Marie Legault","is_ca":true},{"name":"Alain Pacis","is_ca":true},{"name":"Andrea Oneglia","is_ca":true},{"name":"Maxime Caron","is_ca":true},{"name":"Philippe Chétaille","is_ca":false},{"name":"Luis B. Barreiro","is_ca":true},{"name":"Donghai Liu","is_ca":true},{"name":"Xioyan Qi","is_ca":true},{"name":"Stanley Nattel","is_ca":true},{"name":"Séverine Leclerc","is_ca":true},{"name":"Mélanie Breton‐Larrivée","is_ca":true},{"name":"Serge McGraw","is_ca":true},{"name":"Gregor Andelfinger","is_ca":true},{"name":"Jeroen Bakkers","is_ca":false},{"name":"Bart Loeys","is_ca":false},{"name":"Michel Pucéat","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004141805505505191,"gpt":0.2120772297687713,"spread":0.2079354242632661,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001112457,0.0003288375,0.000222668,0.0004172418,0.0001240516,0.0002224696,0.0001402657,0.0002214371,0.001192507],"category_scores_gemma":[0.0001741693,0.0001114624,0.0002222989,0.0002575571,0.0002196438,0.000091792,0.0001823885,0.0003179238,0.000164087],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001553888,"about_ca_system_score_gemma":0.0001514703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003473342,"about_ca_topic_score_gemma":0.0008989345,"domain_scores_codex":[0.9999058,0.000006386437,0.000008179189,0.0000418044,0.00002648923,0.00001126314],"domain_scores_gemma":[0.9998492,0.0000331599,0.00005865814,0.00001724429,0.00001331972,0.00002833111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001009721,0.000006718291,0.0100266,0.00005802645,0.00001669862,0.000849049,0.00003084714,0.0001009959,0.9862635,0.0001239142,0.0000615704,0.002361031],"study_design_scores_gemma":[0.00004695939,0.0003512384,0.3290573,0.0000269945,0.000143692,0.01271424,0.0001076844,0.002767441,0.6483296,0.0006013313,0.005837874,0.00001554633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937673,0.0008957263,0.00331423,0.0001223539,0.00001087561,0.00001863812,0.001080532,0.00008181071,0.0007085352],"genre_scores_gemma":[0.9926717,0.0006460432,0.004570783,0.0001056991,0.00001130941,0.00002919638,0.001329619,0.00002427369,0.0006113442],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001192507,"threshold_uncertainty_score":0.003989339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2970183103","doi":"10.1016/j.jcmgh.2019.08.006","title":"Impaired Intestinal Farnesoid X Receptor Signaling in Cystic Fibrosis Mice","year":2019,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Stichting Vrienden Beatrix Kinderziekenhuis; Universitair Medisch Centrum Groningen; Nederlandse Cystic Fibrosis Stichting; McGill University; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Farnesoid X receptor; Cystic fibrosis; Fibrosis; Medicine; Biology; Nuclear receptor; Internal medicine; Genetics; Gene; Transcription factor","authors":[{"name":"Pauline T. Ikpa","is_ca":false},{"name":"Marcela Doktorova","is_ca":false},{"name":"Kelly F. Meijsen","is_ca":false},{"name":"Natascha D.A. Nieuwenhuijze","is_ca":false},{"name":"Henkjan J. Verkade","is_ca":false},{"name":"Johan W. Jonker","is_ca":false},{"name":"Hugo R. de Jonge","is_ca":false},{"name":"Marcel J. C. Bijvelds","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006832164472864362,"gpt":0.2413679058880879,"spread":0.2345357414152235,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003867393,0.001154422,0.0006240345,0.001818764,0.0005333364,0.0005981777,0.0004620498,0.001807101,0.006037833],"category_scores_gemma":[0.0003631657,0.0005738849,0.0007254715,0.0004353751,0.001103028,0.0005453135,0.0004728815,0.001598171,0.001127002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000687398,"about_ca_system_score_gemma":0.0004197365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001051967,"about_ca_topic_score_gemma":0.001156676,"domain_scores_codex":[0.999409,0.0000805837,0.00008477068,0.000196444,0.0001192049,0.0001099864],"domain_scores_gemma":[0.999015,0.0001450337,0.0004615144,0.0000615204,0.00004608245,0.0002709129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005772323,0.0001058441,0.0007839014,0.00009564279,0.00001575478,0.0005020479,0.00005392343,0.00008555281,0.9958205,0.0001726498,0.0001084567,0.001678533],"study_design_scores_gemma":[0.0004899505,0.001883924,0.05254472,0.0001737041,0.0002199588,0.01051315,0.0003398047,0.002224887,0.9240916,0.000464644,0.006993793,0.00005979815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990365,0.00220586,0.003067084,0.0003763303,0.00005227179,0.00009012353,0.002148534,0.0003790512,0.00131578],"genre_scores_gemma":[0.9875751,0.001425694,0.004194935,0.0002322315,0.00002958117,0.0002560727,0.001676796,0.0001535726,0.004456157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006037833,"threshold_uncertainty_score":0.02019858,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}