{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":145,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":145,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"f1a95e232963","filters":{"venue":"Clinical Epigenetics"}},"results":[{"id":"W2154618092","doi":"10.1186/1868-7083-4-5","title":"Roles of histone deacetylases in epigenetic regulation: emerging paradigms from studies with inhibitors","year":2012,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":503,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Manitoba Health Research Council","keywords":"Histone deacetylase; Epigenetics; Biology; Histone; Chromatin remodeling; Reprogramming; HDAC1; Chromatin; Transcription factor; Acetylation; Vorinostat; Histone deacetylase 5; Transcriptional regulation; Computational biology; Cell biology; Genetics; Gene","authors":[{"name":"Geneviève P. Delcuve","is_ca":true},{"name":"Dilshad H. Khan","is_ca":true},{"name":"James Davie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05871680359192849,"gpt":0.4262477099212495,"spread":0.367530906329321,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002956616,0.0007913177,0.00143218,0.001078735,0.0004447605,0.002017321,0.001025994,0.001168897,0.002193156],"category_scores_gemma":[0.00140323,0.0003866887,0.0007925039,0.001070707,0.002319605,0.003379354,0.001382919,0.003748605,0.0009298416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001375993,"about_ca_system_score_gemma":0.0008513238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006917911,"about_ca_topic_score_gemma":0.00132369,"domain_scores_codex":[0.9992787,0.0002234148,0.00004793192,0.0001484783,0.0001842677,0.000117279],"domain_scores_gemma":[0.9989415,0.0005441677,0.0001090134,0.00009024407,0.0001866565,0.0001285556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00129282,0.0008119909,0.001791156,0.008348241,0.0003203648,0.0008192933,0.0007897889,0.00186401,0.07167482,0.1315167,0.01964311,0.7611277],"study_design_scores_gemma":[0.0003354958,0.002798885,0.003738882,0.001724905,0.000284258,0.001871052,0.0005755943,0.002242174,0.04550608,0.06411854,0.8766765,0.0001275364],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006232923,0.973756,0.007158727,0.00599382,0.000528498,0.00002866544,0.00008804704,0.00005988195,0.006153467],"genre_scores_gemma":[0.04337598,0.9462125,0.003857017,0.0026644,0.001224463,0.00008823563,0.0001221504,0.00002425527,0.002431056],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002956616,"threshold_uncertainty_score":0.01563627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2971578437","doi":"10.1186/s13148-019-0713-2","title":"Air pollution and DNA methylation: effects of exposure in humans","year":2019,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Air Quality and Health Impacts","field":"Environmental Science","cited_by":361,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Stornoway Diamond (Canada); University of British Columbia; University of British Columbia Hospital","funders":"Canadian Institutes of Health Research; Mitacs; Canada Research Chairs; Institute of Circulatory and Respiratory Health; Michael Smith Health Research BC; Canada Excellence Research Chairs, Government of Canada; British Columbia Lung Association","keywords":"dNaM; Environmental health; Air pollution; Medicine; Asthma; DNA methylation; Immunology; Biology; Ecology; Genetics","authors":[{"name":"Christopher F. Rider","is_ca":true},{"name":"Chris Carlsten","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1596919095045574,"gpt":0.4507814631193121,"spread":0.2910895536147546,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004918934,0.0003229521,0.0005085458,0.0004874671,0.0002994927,0.0007520116,0.0003236799,0.0007084713,0.002815646],"category_scores_gemma":[0.000775489,0.0001537879,0.0003522074,0.0008119812,0.0004602173,0.0004475072,0.000684919,0.0009239197,0.0006909592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000422725,"about_ca_system_score_gemma":0.0007802957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002876093,"about_ca_topic_score_gemma":0.003581986,"domain_scores_codex":[0.9996181,0.0001412907,0.00002748918,0.0001024911,0.00008329426,0.00002732936],"domain_scores_gemma":[0.9997663,0.00007302624,0.00006314123,0.00001178335,0.00005917749,0.00002655939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004165315,0.0001099572,0.01350598,0.01430174,0.0007319474,0.0003850965,0.0007548176,0.0007002972,0.02438175,0.01019961,0.03777251,0.8967397],"study_design_scores_gemma":[0.00004279799,0.0004574811,0.05048102,0.003456964,0.0005038374,0.001821411,0.0004603868,0.0004996659,0.01061248,0.01385986,0.9177371,0.00006696816],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006681252,0.9790699,0.002213412,0.004959411,0.0008074599,0.00002178092,0.0006204705,0.00007270806,0.005553585],"genre_scores_gemma":[0.08007775,0.90648,0.002411474,0.002132984,0.001333279,0.00007959612,0.000638034,0.00002317466,0.006823581],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002876093,"threshold_uncertainty_score":0.009419262,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3180853053","doi":"10.1186/s13148-021-01126-1","title":"The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes","year":2021,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Lethbridge; University of Manitoba; CancerCare Manitoba","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Comisión Nacional de Investigación Científica y Tecnológica; CancerCare Manitoba Foundation; National Institutes of Health; Agencia Nacional de Investigación y Desarrollo; University of Manitoba; Natural Sciences and Engineering Research Council of Canada","keywords":"Epigenetics; H3K4me3; Human genetics; Biology; Genetics; Gene; Computational biology; Epigenomics; Evolutionary biology; DNA methylation; Gene expression; Promoter","authors":[{"name":"Tasnim H. Beacon","is_ca":true},{"name":"Geneviève P. Delcuve","is_ca":true},{"name":"Camila López","is_ca":true},{"name":"Gino Nardocci","is_ca":false},{"name":"Igor Kovalchuk","is_ca":true},{"name":"André J. van Wijnen","is_ca":false},{"name":"James Davie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03670675112389615,"gpt":0.4143564149759556,"spread":0.3776496638520594,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000269043,0.0005365691,0.0007521908,0.001241229,0.0001892499,0.0007858478,0.0004191373,0.0005028028,0.002830844],"category_scores_gemma":[0.0003154742,0.0001717878,0.0002783636,0.001306639,0.0004700123,0.0007520528,0.0004523812,0.0007504073,0.001893761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006162731,"about_ca_system_score_gemma":0.000688954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008910045,"about_ca_topic_score_gemma":0.00116689,"domain_scores_codex":[0.9998723,0.00001788563,0.00001690792,0.00003730182,0.00004185997,0.00001371139],"domain_scores_gemma":[0.999884,0.00004312977,0.00002626274,0.000004155235,0.00003023717,0.0000122259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001577104,0.00004407385,0.001161844,0.0103408,0.00009533417,0.0006067972,0.0001722613,0.0005656306,0.03369381,0.006166765,0.02162624,0.9253687],"study_design_scores_gemma":[0.000008646894,0.00009498571,0.004273687,0.0008181838,0.0001028401,0.003269632,0.000104281,0.0002273265,0.009293013,0.003799674,0.9779775,0.00003028523],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001597316,0.991804,0.001573773,0.0006567594,0.0002239535,0.000008688372,0.0001315271,0.00004432082,0.003959682],"genre_scores_gemma":[0.00881623,0.9852843,0.001157626,0.0003285831,0.0003271395,0.00001455722,0.000255791,0.00000786367,0.003807919],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002830844,"threshold_uncertainty_score":0.009470105,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2970502399","doi":"10.1186/s13148-019-0717-y","title":"Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":234,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba; BC Children's Hospital; University of British Columbia","funders":"H2020 European Research Council; National Institute on Minority Health and Health Disparities; National Institute of Environmental Health Sciences; National Institute of General Medical Sciences; National Institute on Aging; National Cancer Institute; National Institutes of Health; Erasmus Medisch Centrum; Joint Programming Initiative A healthy diet for a healthy life; Erasmus Universiteit Rotterdam; ZonMw","keywords":"dNaM; Deconvolution; DNA methylation; Computer science; Leverage (statistics); Computational biology; Data mining; Biology; Algorithm; Artificial intelligence; Genetics","authors":[{"name":"Kristina Gervin","is_ca":false},{"name":"Lucas A. Salas","is_ca":false},{"name":"Kelly M. Bakulski","is_ca":false},{"name":"Menno C. van Zelm","is_ca":false},{"name":"Devin C. Koestler","is_ca":false},{"name":"John K. Wiencke","is_ca":false},{"name":"Liesbeth Duijts","is_ca":false},{"name":"Henriëtte A. Moll","is_ca":false},{"name":"Karl T. Kelsey","is_ca":false},{"name":"Michael S. Kobor","is_ca":true},{"name":"Robert Lyle","is_ca":false},{"name":"Brock C. Christensen","is_ca":false},{"name":"Janine F. Felix","is_ca":false},{"name":"Meaghan J. Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1189155673536061,"gpt":0.4546637391315752,"spread":0.3357481717779691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.1124103,0.002302498,0.002088699,0.00525843,0.001728128,0.003168775,0.003642704,0.002174746,0.001573191],"category_scores_gemma":[0.1722804,0.0008644332,0.003756461,0.00405904,0.00219607,0.001343223,0.004433721,0.001413006,0.001115152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001794285,"about_ca_system_score_gemma":0.005886934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004150414,"about_ca_topic_score_gemma":0.005690149,"domain_scores_codex":[0.9420146,0.03021812,0.005660115,0.008993995,0.01245977,0.0006533624],"domain_scores_gemma":[0.8838298,0.05591285,0.008214639,0.01782528,0.03319222,0.001025187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006594645,0.001088229,0.217831,0.01503634,0.01770304,0.0006542117,0.003127523,0.05762521,0.0980875,0.008650709,0.01706474,0.5565369],"study_design_scores_gemma":[0.001895943,0.005819523,0.2505933,0.005551529,0.01754277,0.003245714,0.001181445,0.1935584,0.4088272,0.01305758,0.09747431,0.001252332],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3156892,0.02245359,0.635927,0.0008750681,0.0004245614,0.003199197,0.01200934,0.00606944,0.003352584],"genre_scores_gemma":[0.336668,0.003410483,0.6221608,0.0008013049,0.0001354664,0.003869191,0.02945738,0.002305801,0.001191616],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1124103,"threshold_uncertainty_score":0.5944896,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2173045156","doi":"10.1186/s13148-015-0143-8","title":"Imprinting disorders: a group of congenital disorders with overlapping patterns of molecular changes affecting imprinted loci","year":2015,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Medical Research Council; Assistance publique-Hôpitaux de Paris; Bundesministerium für Bildung und Forschung; Seconda Università degli Studi di Napoli; Institute of Genetics; Institut National de la Santé et de la Recherche Médicale; European Cooperation in Science and Technology; Instituto de Salud Carlos III; National Institute for Health and Care Research","keywords":"Genomic imprinting; Epigenetics; Human genetics; Imprinting (psychology); Biology; Genetics; DNA methylation; Gene; Molecular genetics; Disease; Bioinformatics; Computational biology; Medicine; Gene expression; Internal medicine","authors":[{"name":"Thomas Eggermann","is_ca":false},{"name":"Guiomar Pérez de Nanclares","is_ca":false},{"name":"Eamonn R. Maher","is_ca":false},{"name":"I. Karen Temple","is_ca":false},{"name":"Zeynep Tümer","is_ca":false},{"name":"David Monk","is_ca":false},{"name":"Deborah Mackay","is_ca":false},{"name":"Karen Grønskov","is_ca":false},{"name":"Andrea Riccio","is_ca":false},{"name":"Agnès Linglart","is_ca":false},{"name":"Irène Netchine","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03780435557465298,"gpt":0.345246924430604,"spread":0.307442568855951,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003927046,0.0007764113,0.001075323,0.003125405,0.0003189982,0.0008440482,0.0008485556,0.000847697,0.00371653],"category_scores_gemma":[0.000732946,0.0001499392,0.000358673,0.002653369,0.0006556291,0.0009045929,0.0008197192,0.001248666,0.002080179],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006387828,"about_ca_system_score_gemma":0.001158811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001057041,"about_ca_topic_score_gemma":0.002024661,"domain_scores_codex":[0.9998314,0.00002631783,0.00002752705,0.00002993855,0.00006543997,0.00001928706],"domain_scores_gemma":[0.9997078,0.0001312215,0.00005432351,0.00001005183,0.00005433035,0.00004221466],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004019804,0.00002690837,0.0005989624,0.007947797,0.00008422773,0.0009107224,0.00009907346,0.0002305439,0.001719257,0.005016233,0.02393428,0.9593917],"study_design_scores_gemma":[0.000008498557,0.00002562815,0.001123829,0.00161385,0.00009095835,0.007522971,0.00006893624,0.0000397448,0.000488692,0.002267325,0.9867338,0.00001581913],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002430504,0.9973171,0.0003343447,0.0003496042,0.0001496957,0.000005302358,0.00004675744,0.00001834556,0.001535648],"genre_scores_gemma":[0.001796159,0.9965518,0.0003749804,0.0001879201,0.0001383175,0.000007142244,0.000100627,0.000003097177,0.0008400445],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00371653,"threshold_uncertainty_score":0.01243305,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170711824","doi":"10.1186/1868-7083-5-3","title":"Pharmacokinetic and pharmacodynamic analysis of 5-aza-2’-deoxycytidine (decitabine) in the design of its dose-schedule for cancer therapy","year":2013,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"","keywords":"Decitabine; Deoxycytidine; Azacitidine; Medicine; Cytidine deaminase; Myeloid leukemia; Pharmacology; Cancer; Cancer research; Pharmacodynamics; Cytarabine; Hypomethylating agent; Pharmacokinetics; DNA methylation; Oncology; Internal medicine; Gemcitabine; Biology; Immunology; Genetics","authors":[{"name":"Metin Karahoca","is_ca":true},{"name":"Richard L. Momparler","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09477849107436917,"gpt":0.4165955850140917,"spread":0.3218170939397225,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004105426,0.0002878529,0.000469405,0.0002083703,0.0001026314,0.0004948876,0.0002243368,0.0002986962,0.0008222919],"category_scores_gemma":[0.0007478762,0.0002137701,0.0002713206,0.0002954381,0.0001403758,0.0001992141,0.0001063979,0.0006727659,0.0003500987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006468651,"about_ca_system_score_gemma":0.0004868869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001201047,"about_ca_topic_score_gemma":0.001322193,"domain_scores_codex":[0.999763,0.00008416727,0.0000100888,0.00004730343,0.00006817835,0.00002731975],"domain_scores_gemma":[0.9998214,0.0000664886,0.00004576646,0.00001323711,0.00002746376,0.00002571846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00563724,0.0004728155,0.005130149,0.0004152432,0.0001807699,0.0001890421,0.000111277,0.01381312,0.8809772,0.001086283,0.001634244,0.09035258],"study_design_scores_gemma":[0.0005667246,0.01607061,0.03279943,0.00006303952,0.000536052,0.002017006,0.00008803535,0.06473745,0.813314,0.0006484906,0.06906516,0.00009402091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8992398,0.03775166,0.05118891,0.0006830913,0.0002127093,0.0005811797,0.001572733,0.0003264696,0.008443459],"genre_scores_gemma":[0.9817672,0.005904892,0.008759642,0.0001991886,0.00004885542,0.0002056021,0.0006348919,0.00008357185,0.002396136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001201047,"threshold_uncertainty_score":0.004693329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897267849","doi":"10.1186/s13148-018-0556-2","title":"Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute on Aging; European Commission; Michael Smith Health Research BC; European Research Council; National Institutes of Health; British Columbia Lung Association; Canadian Institutes of Health Research; Mitacs; Centre National de la Recherche Scientifique; Canadian Institute for Advanced Research","keywords":"dNaM; DNA methylation; CpG site; Epigenetics; Bioinformatics; Computational biology; Biology; Oncology; Genetics; Medicine; Gene","authors":[{"name":"Lisa M. McEwen","is_ca":true},{"name":"Meaghan J. Jones","is_ca":true},{"name":"David Lin","is_ca":true},{"name":"Rachel D. Edgar","is_ca":true},{"name":"Lucas Husquin","is_ca":false},{"name":"Julia L. MacIsaac","is_ca":true},{"name":"Katia E. Ramadori","is_ca":true},{"name":"Alexander M. Morin","is_ca":true},{"name":"Christopher F. Rider","is_ca":true},{"name":"Chris Carlsten","is_ca":true},{"name":"Lluís Quintana‐Murci","is_ca":false},{"name":"Steve Horvath","is_ca":false},{"name":"Michael S. Kobor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06449069855221569,"gpt":0.4392783768135737,"spread":0.374787678261358,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04208231,0.002042532,0.001435216,0.002578768,0.0009592277,0.0013239,0.001627338,0.0009704179,0.0009319138],"category_scores_gemma":[0.06227332,0.001000284,0.002302788,0.00217238,0.001031379,0.0006335546,0.002130243,0.0009435752,0.0005921252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000797129,"about_ca_system_score_gemma":0.001908341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001985645,"about_ca_topic_score_gemma":0.00455721,"domain_scores_codex":[0.9695703,0.01521487,0.002885461,0.005519255,0.006478745,0.0003313007],"domain_scores_gemma":[0.9390372,0.02609895,0.006894338,0.01132596,0.01611298,0.0005305587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004899743,0.0006875848,0.2480977,0.005791619,0.00987648,0.0002835695,0.001281078,0.01514121,0.2816863,0.00166856,0.005535733,0.4250505],"study_design_scores_gemma":[0.0005334689,0.006176491,0.4384086,0.0007905783,0.008485351,0.001414069,0.0004137456,0.06810511,0.4450133,0.00237322,0.02779847,0.0004875259],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.302749,0.01090684,0.6749882,0.0004321992,0.0004103174,0.00235982,0.003618975,0.002524607,0.002009917],"genre_scores_gemma":[0.3777029,0.002587731,0.6075993,0.0005192793,0.0002073393,0.002990274,0.006381932,0.00107191,0.0009393652],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.04208231,"threshold_uncertainty_score":0.2225552,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2947363345","doi":"10.1186/s13148-019-0658-5","title":"Gene domain-specific DNA methylation episignatures highlight distinct molecular entities of ADNP syndrome","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Connective tissue disorders research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":128,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Victoria Hospital; London Health Sciences Centre; Western University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Children's Health Foundation; McMaster University; Children's Health Research Institute","keywords":"Genetics; Biology; DNA methylation; Gene; Human genetics; OMIM : Online Mendelian Inheritance in Man; Chromatin; Methylation; Bioinformatics; Gene expression; Phenotype","authors":[{"name":"Eric G. Bend","is_ca":false},{"name":"Erfan Aref‐Eshghi","is_ca":true},{"name":"David B. Everman","is_ca":false},{"name":"R. Curtis Rogers","is_ca":false},{"name":"Sara Cathey","is_ca":false},{"name":"Eloise J. Prijoles","is_ca":false},{"name":"Michael J. Lyons","is_ca":false},{"name":"Heather L. Davis","is_ca":false},{"name":"Katie Clarkson","is_ca":false},{"name":"Karen W. Gripp","is_ca":false},{"name":"Dong Li","is_ca":false},{"name":"Elizabeth Bhoj","is_ca":false},{"name":"Elaine H. Zackai","is_ca":false},{"name":"Paul R. Mark","is_ca":false},{"name":"Håkon Håkonarson","is_ca":false},{"name":"Laurie Demmer","is_ca":false},{"name":"Michael A. Levy","is_ca":true},{"name":"Jennifer Kerkhof","is_ca":true},{"name":"Alan Stuart","is_ca":true},{"name":"David I. Rodenhiser","is_ca":true},{"name":"Michael J. Friez","is_ca":false},{"name":"Roger E. Stevenson","is_ca":false},{"name":"Charles E. Schwartz","is_ca":false},{"name":"Bekim Sadiković","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02269880302682404,"gpt":0.3296962994632304,"spread":0.3069974964364064,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003214022,0.0003824574,0.0002089072,0.000805114,0.0001403887,0.0003683516,0.0001980675,0.0002995341,0.0008802287],"category_scores_gemma":[0.001375261,0.0000974752,0.0002605039,0.000306586,0.0002728649,0.0001456295,0.0004451232,0.000289623,0.0001048854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002533027,"about_ca_system_score_gemma":0.0001619911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001059726,"about_ca_topic_score_gemma":0.001233832,"domain_scores_codex":[0.999846,0.00002345183,0.00001271309,0.00006724956,0.00002752002,0.00002299323],"domain_scores_gemma":[0.9995179,0.0002540756,0.0001034982,0.00002769178,0.00004043542,0.00005641004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001107861,0.0000631303,0.896604,0.0000603226,0.0001366566,0.001354862,0.0001806542,0.009820946,0.06319694,0.0006096132,0.0002089228,0.02665607],"study_design_scores_gemma":[0.00009967517,0.0004248703,0.7327137,0.00003458553,0.0002640925,0.006178713,0.0002789305,0.2241657,0.02966793,0.004734051,0.00139672,0.00004105579],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954249,0.0001616372,0.003835008,0.00003216025,0.000002275043,0.00001399946,0.0001406745,0.0000458695,0.0003434426],"genre_scores_gemma":[0.9983966,0.00002777231,0.001332192,0.000008477349,0.000002490376,0.000006977881,0.0001723326,0.000003520832,0.00004964818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001059726,"threshold_uncertainty_score":0.002944708,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2960426719","doi":"10.1186/s13148-019-0696-z","title":"Apabetalone (RVX-208) reduces vascular inflammation in vitro and in CVD patients by a BET-dependent epigenetic mechanism","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Libin Cardiovascular Institute of Alberta; University of Calgary; Resverlogix (Canada)","funders":"","keywords":"Bromodomain; Inflammation; Mace; Epigenetics; Cell adhesion molecule; Medicine; BRD4; Endothelium; Cell adhesion; Soluble cell adhesion molecules; Immunology; Monocyte; Internal medicine; Endocrinology; Cancer research; Biology; Biochemistry; Cell; Myocardial infarction","authors":[{"name":"Laura Tsujikawa","is_ca":true},{"name":"Li Fu","is_ca":true},{"name":"Shovon Das","is_ca":true},{"name":"Christopher Halliday","is_ca":true},{"name":"Brooke D. Rakai","is_ca":true},{"name":"Stephanie C. Stotz","is_ca":true},{"name":"Christopher D. Sarsons","is_ca":true},{"name":"Dean Gilham","is_ca":true},{"name":"Emily Daze","is_ca":true},{"name":"Sylwia Wasiak","is_ca":true},{"name":"Deborah Studer","is_ca":true},{"name":"Kristina D. Rinker","is_ca":true},{"name":"Michael Sweeney","is_ca":false},{"name":"Jan O. Johansson","is_ca":false},{"name":"Norman C.W. Wong","is_ca":true},{"name":"Ewelina Kulikowski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00818863877657125,"gpt":0.2606006899581474,"spread":0.2524120511815762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001336769,0.0002387943,0.0002638766,0.000156839,0.0001239367,0.000217438,0.0001423049,0.0001809781,0.00218843],"category_scores_gemma":[0.0001213374,0.00009631774,0.0002202289,0.0001098466,0.0001338055,0.00009844576,0.0001224488,0.0005997899,0.0002839324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001287114,"about_ca_system_score_gemma":0.0001143091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002672537,"about_ca_topic_score_gemma":0.0005496088,"domain_scores_codex":[0.9999275,0.00001733386,0.000006079989,0.0000152619,0.00001613879,0.00001770844],"domain_scores_gemma":[0.9999452,0.000009592996,0.00001690145,0.000005389113,0.000006452821,0.00001646709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003101856,0.0005179672,0.001332176,0.0001404642,0.00004629968,0.00005191483,0.00002548362,0.0001226456,0.9797178,0.00004245271,0.0002016725,0.01469935],"study_design_scores_gemma":[0.001615565,0.03036579,0.07499266,0.00004712278,0.0003001123,0.0008101472,0.0001399652,0.00156029,0.8816096,0.0001807135,0.008353317,0.00002477795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942227,0.003675466,0.0006294271,0.0001237344,0.00005957793,0.00003527109,0.0003324182,0.00005094513,0.0008704416],"genre_scores_gemma":[0.9961691,0.001373118,0.0006244243,0.000119247,0.00002439574,0.00002941711,0.0004314679,0.000005120662,0.001223574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00218843,"threshold_uncertainty_score":0.00732106,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997423100","doi":"10.1186/s13148-015-0074-4","title":"Polycomb-mediated silencing in neuroendocrine prostate cancer","year":2015,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; BC Cancer Agency; Vancouver General Hospital; University of British Columbia","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; BC Cancer Foundation; Michael Smith Health Research BC; Prostate Cancer Canada","keywords":"Epigenetics; Gene silencing; Prostate cancer; Biology; Cancer research; Downregulation and upregulation; EZH2; Repressor; Cancer; Genetics; Gene; Gene expression","authors":[{"name":"Pier‐Luc Clermont","is_ca":true},{"name":"Dong Lin","is_ca":true},{"name":"Francesco Crea","is_ca":true},{"name":"Rebecca Wu","is_ca":true},{"name":"Hui Xue","is_ca":true},{"name":"Yuwei Wang","is_ca":true},{"name":"Kelsie L. Thu","is_ca":true},{"name":"Wan L. Lam","is_ca":true},{"name":"Colin C. Collins","is_ca":true},{"name":"Yuzhuo Wang","is_ca":true},{"name":"Cheryl D. Helgason","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1459865484202626,"gpt":0.4525723356037064,"spread":0.3065857871834438,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001896854,0.0002308925,0.0002048693,0.0003695902,0.0001514892,0.0003370389,0.0001936254,0.0001235811,0.001054649],"category_scores_gemma":[0.0002282138,0.00008019515,0.0001850773,0.0004358594,0.0002467094,0.000118005,0.0003083028,0.0003317309,0.0002190831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002790542,"about_ca_system_score_gemma":0.0002153384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007598725,"about_ca_topic_score_gemma":0.00175728,"domain_scores_codex":[0.9998621,0.00001583324,0.00001182959,0.00004322745,0.00005103367,0.00001603403],"domain_scores_gemma":[0.9998046,0.00003991484,0.00008018781,0.00002802113,0.00002093608,0.00002636052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004140683,0.00004234777,0.02957418,0.0004356852,0.0001561308,0.0003240496,0.00008566763,0.0008673067,0.9436734,0.0004402046,0.0007512947,0.02323565],"study_design_scores_gemma":[0.00006855308,0.001256975,0.4601835,0.00007025235,0.0004092377,0.004463551,0.0001950279,0.008188557,0.4889531,0.001069142,0.03509781,0.00004429806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9756444,0.01175441,0.006083929,0.0002018105,0.00003864506,0.00005989472,0.00357557,0.0002762795,0.002365119],"genre_scores_gemma":[0.9923019,0.00231216,0.001452405,0.00007470341,0.00001295999,0.00003202827,0.002864481,0.00001879469,0.0009305034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001054649,"threshold_uncertainty_score":0.003528118,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2782684324","doi":"10.1186/s13148-018-0439-6","title":"DNA methylation as a predictor of fetal alcohol spectrum disorder","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Prenatal Substance Exposure Effects","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Learning Partnership; Canada's Michael Smith Genome Sciences Centre; University of Manitoba; Queen's University; University of British Columbia; BC Children's Hospital","funders":"National Institute on Alcohol Abuse and Alcoholism; Networks of Centres of Excellence of Canada; National Institutes of Health; Kids Brain Health Network; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Australian Government; Canadian Institute for Advanced Research; Canadian Foundation on Fetal Alcohol Research; Fondation Brain Canada","keywords":"DNA methylation; Epigenetics; Autism spectrum disorder; Cohort; Fetal Alcohol Spectrum Disorder; Methylation; Prenatal alcohol exposure; Fetal alcohol syndrome; Medicine; Autism; Epigenome; Bioinformatics; Biology; Clinical psychology; Oncology; Genetics; Internal medicine; Pregnancy; Psychiatry; DNA; Gene","authors":[{"name":"Alexandre A. Lussier","is_ca":true},{"name":"Alexander M. Morin","is_ca":true},{"name":"Julia L. MacIsaac","is_ca":true},{"name":"Jenny Salmon","is_ca":true},{"name":"Joanne Weinberg","is_ca":true},{"name":"James N. Reynolds","is_ca":true},{"name":"Paul Pavlidis","is_ca":true},{"name":"Albert E. Chudley","is_ca":true},{"name":"Michael S. Kobor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03746357615836947,"gpt":0.3686286606701542,"spread":0.3311650845117847,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008007761,0.000359484,0.0002901293,0.0007561089,0.0002211491,0.0003258198,0.0002777933,0.0003457245,0.001757569],"category_scores_gemma":[0.003052572,0.0001326344,0.0004395722,0.0004792885,0.0001671157,0.0001524664,0.0003921171,0.0006599189,0.0003949446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000376996,"about_ca_system_score_gemma":0.0003729947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007053245,"about_ca_topic_score_gemma":0.007486705,"domain_scores_codex":[0.9996803,0.00007586975,0.00002174188,0.0001487273,0.00004180319,0.00003156851],"domain_scores_gemma":[0.9989483,0.000559114,0.0001833638,0.00007040445,0.0001544058,0.00008433698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005374774,0.00004825593,0.9674839,0.00006285122,0.0003008326,0.00006343908,0.0000462398,0.006828985,0.004460191,0.00007166788,0.001682909,0.01841318],"study_design_scores_gemma":[0.00008471406,0.0004337705,0.8643617,0.00006320572,0.0005141837,0.0006235891,0.0001025949,0.1179838,0.0102863,0.0009830125,0.004528095,0.00003487836],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9815094,0.0008607621,0.005686868,0.0003381477,0.00002941017,0.00003543587,0.01077616,0.0002232656,0.0005404272],"genre_scores_gemma":[0.9883122,0.0001820891,0.003902408,0.00006137036,0.00001953659,0.00003017026,0.007186736,0.00001833928,0.0002871124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007053245,"threshold_uncertainty_score":0.01402438,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2612235027","doi":"10.1186/s13148-017-0349-z","title":"Associations between maternal risk factors of adverse pregnancy and birth outcomes and the offspring epigenetic clock of gestational age at birth","year":2017,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Tays; Kuopion Yliopistollinen Sairaala; Academy of Finland; Helsingin ja Uudenmaan Sairaanhoitopiiri; Helsingin Yliopisto","keywords":"dNaM; Offspring; Pregnancy; Obstetrics; Gestational diabetes; Fetus; Medicine; Gestational age; Gestation; Biology; DNA methylation; Genetics","authors":[{"name":"Polina Girchenko","is_ca":false},{"name":"Jari Lahti","is_ca":false},{"name":"Darina Czamara","is_ca":false},{"name":"Anna K. Knight","is_ca":false},{"name":"Meaghan J. Jones","is_ca":true},{"name":"Anna Suarez","is_ca":false},{"name":"Esa Hämäläinen","is_ca":false},{"name":"Eero Kajantie","is_ca":false},{"name":"Hannele Laivuori","is_ca":false},{"name":"Pia Villa","is_ca":false},{"name":"Rebecca M. Reynolds","is_ca":false},{"name":"Michael S. Kobor","is_ca":true},{"name":"Alicia K. Smith","is_ca":false},{"name":"Elisabeth B. Binder","is_ca":false},{"name":"Katri Räikkönen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04429032305621929,"gpt":0.3430684272478347,"spread":0.2987781041916154,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004311204,0.0001464925,0.0001549762,0.0003120792,0.0001132839,0.0002332999,0.0001726065,0.0001915286,0.001555609],"category_scores_gemma":[0.001978635,0.0000932131,0.0001826282,0.0002926381,0.0001563536,0.0001016437,0.0002202537,0.0002694113,0.00008644292],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000193763,"about_ca_system_score_gemma":0.0001917395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002018101,"about_ca_topic_score_gemma":0.002101074,"domain_scores_codex":[0.999796,0.00006304196,0.00001403889,0.00006721497,0.00003096378,0.00002872999],"domain_scores_gemma":[0.9986026,0.0003625387,0.0006864658,0.0001170836,0.00008949783,0.0001417536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001705921,0.0000107991,0.9946064,0.00001113154,0.00007299882,0.00006791454,0.00005660786,0.00006403064,0.001890713,0.00008202471,0.00003545603,0.002931402],"study_design_scores_gemma":[7.83645e-7,0.00002477249,0.9995397,0.000002387666,0.00001271167,0.00008390639,0.00001369387,0.00009344192,0.0001355453,0.00003625295,0.00005582643,8.987053e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980933,0.0006051169,0.0004621185,0.00006163457,0.000007257318,0.000002845209,0.0003225167,0.00000603189,0.0004391706],"genre_scores_gemma":[0.9992214,0.0001544602,0.0003174419,0.00001069701,0.000004276955,0.000004230329,0.0001167581,0.000002096703,0.000168581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002018101,"threshold_uncertainty_score":0.005204082,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2522351964","doi":"10.1186/s13148-016-0268-4","title":"The emerging role of lysine methyltransferase SETD8 in human diseases","year":2016,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ministero dell’Istruzione, dell’Università e della Ricerca; European Cooperation in Science and Technology; York University; School of Medicine, New York University; Università degli Studi di Salerno; Constellation Pharmaceuticals","keywords":"Methyltransferase; Histone H4; Histone methyltransferase; Proliferating cell nuclear antigen; Histone; Biology; Lysine; Epigenetics; Cell biology; DNA replication; Biochemistry; Cell growth; DNA; Methylation; Gene","authors":[{"name":"Ciro Milite","is_ca":false},{"name":"Alessandra Feoli","is_ca":false},{"name":"Monica Viviano","is_ca":false},{"name":"Donatella Rescigno","is_ca":false},{"name":"Agostino Cianciulli","is_ca":false},{"name":"Amodio Luca Balzano","is_ca":false},{"name":"Antonello Mai","is_ca":false},{"name":"Sabrina Castellano","is_ca":false},{"name":"Gianluca Sbardella","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04422844623955558,"gpt":0.429736330433742,"spread":0.3855078841941864,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003763238,0.0004770174,0.0007310724,0.001268636,0.0001965322,0.0005594675,0.0004926494,0.0007577376,0.002952005],"category_scores_gemma":[0.000377877,0.0001419404,0.0003228598,0.001003573,0.0003589809,0.0007281642,0.0007058255,0.001093901,0.001356058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004205586,"about_ca_system_score_gemma":0.0006781823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000488871,"about_ca_topic_score_gemma":0.0008706694,"domain_scores_codex":[0.9998991,0.00001720975,0.00001745361,0.00002025902,0.00003366358,0.00001238285],"domain_scores_gemma":[0.9998595,0.00005970865,0.00002110666,0.000005123179,0.0000356821,0.00001898745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008281831,0.00003258297,0.0003853546,0.009196218,0.00007156794,0.0004253797,0.0000598904,0.0002619685,0.005505473,0.004023452,0.01284434,0.9671111],"study_design_scores_gemma":[0.00001693862,0.00009826728,0.00131663,0.00115501,0.00009598305,0.00320861,0.00004766873,0.00009348442,0.002213003,0.002243267,0.9894928,0.00001849133],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003447561,0.9977457,0.0003198668,0.0003780366,0.0001425461,0.000003824133,0.0000260389,0.00001182387,0.001027397],"genre_scores_gemma":[0.002396185,0.9960263,0.0004175397,0.0001984921,0.0001589343,0.000006774617,0.00005054826,0.000002464203,0.0007428735],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002952005,"threshold_uncertainty_score":0.009875476,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2463358284","doi":"10.1186/s13148-016-0239-9","title":"PPARGC1α gene DNA methylation variations in human placenta mediate the link between maternal hyperglycemia and leptin levels in newborns","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Gestational Diabetes Research and Management","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Cégep de Chicoutimi; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Université de Montréal; Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Université de Sherbrooke; Fonds de Recherche du Québec - Santé; Diabète Québec","keywords":"DNA methylation; Gestational diabetes; Pregnancy; Endocrinology; Internal medicine; Placenta; Leptin; Biology; Cord blood; Epigenetics; PRDM16; Obesity; Medicine; Fetus; Gene; Gestation; Genetics; Brown adipose tissue; Gene expression","authors":[{"name":"Sandra Côté","is_ca":true},{"name":"Valérie Gagné‐Ouellet","is_ca":true},{"name":"Simon‐Pierre Guay","is_ca":true},{"name":"Catherine Allard","is_ca":true},{"name":"Andrée-Anne Houde","is_ca":true},{"name":"Patrice Perron","is_ca":true},{"name":"Jean‐Patrice Baillargeon","is_ca":true},{"name":"Daniel Gaudet","is_ca":true},{"name":"Renée Guérin","is_ca":true},{"name":"Diane Brisson","is_ca":true},{"name":"Marie‐France Hivert","is_ca":true},{"name":"Luigi Bouchard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09897680475774649,"gpt":0.4033279852320775,"spread":0.304351180474331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002855038,0.000138379,0.0001414397,0.0003181885,0.000108942,0.0002087362,0.0001618659,0.0001682871,0.001266033],"category_scores_gemma":[0.000927525,0.0001566397,0.0001393651,0.0003706176,0.0001450473,0.00007448822,0.0001799463,0.0001883882,0.0001220481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002344235,"about_ca_system_score_gemma":0.0002041844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003824558,"about_ca_topic_score_gemma":0.002583654,"domain_scores_codex":[0.9998658,0.00003715002,0.000008233927,0.00003894355,0.00003084207,0.00001898225],"domain_scores_gemma":[0.9997079,0.00007662854,0.0001479711,0.00002281101,0.00002595735,0.00001864246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008983721,0.00002435226,0.888661,0.00008112984,0.0001884087,0.0003098869,0.0004622884,0.0002278987,0.0956331,0.0001176131,0.0001145316,0.01328145],"study_design_scores_gemma":[0.000006148067,0.00007864754,0.9904838,0.00001243648,0.0000683934,0.0005468773,0.00009372989,0.0002835233,0.007979933,0.0001040429,0.0003397076,0.000002739848],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981523,0.0008655237,0.0004531096,0.0000341495,0.000001939519,0.000003754831,0.0002105412,0.000007425178,0.0002713313],"genre_scores_gemma":[0.998886,0.0003062359,0.000374324,0.00001508932,0.00000145505,0.000007502876,0.000145709,0.000003826963,0.0002598415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003824558,"threshold_uncertainty_score":0.007604599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3035710795","doi":"10.1186/s13148-020-00864-y","title":"Harnessing peripheral DNA methylation differences in the Alzheimer’s Disease Neuroimaging Initiative (ADNI) to reveal novel biomarkers of disease","year":2020,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; National Institutes of Health; Genentech; U.S. National Library of Medicine; IXICO; H. Lundbeck A/S; Servier; Eisai; Northern California Institute for Research and Education; Pfizer; Biogen; BioClinica; F. Hoffmann-La Roche; University of Southern California; Eli Lilly and Company; U.S. Department of Defense; Meso Scale Diagnostics; Alzheimer's Disease Neuroimaging Initiative; Novartis Pharmaceuticals Corporation; Bristol-Myers Squibb; National Institute on Aging; Alzheimer's Association; Foundation for the National Institutes of Health","keywords":"DNA methylation; Alzheimer's Disease Neuroimaging Initiative; Neuroimaging; Dementia; Biomarker; Disease; Cohort; Neurology; Oncology; Alzheimer's disease; Cognitive decline; Neurodegeneration; Medicine; Bioinformatics; Internal medicine; Biology; Neuroscience; Genetics; Gene; Gene expression","authors":[{"name":"Aparna Vasanthakumar","is_ca":false},{"name":"J. Wade Davis","is_ca":false},{"name":"Kenneth B. Idler","is_ca":false},{"name":"Jeffrey F. Waring","is_ca":false},{"name":"Elizabeth Asque","is_ca":false},{"name":"Bridget Riley‐Gillis","is_ca":false},{"name":"Shaun Grosskurth","is_ca":false},{"name":"Gyan Srivastava","is_ca":false},{"name":"Sung Eun Kim","is_ca":false},{"name":"Kwangsik Nho","is_ca":false},{"name":"Kelly Nudelman","is_ca":false},{"name":"Kelley Faber","is_ca":false},{"name":"Yu Sun","is_ca":false},{"name":"Tatiana Foroud","is_ca":false},{"name":"Karol Estrada","is_ca":false},{"name":"Liana G. Apostolova","is_ca":false},{"name":"Qingqin S. Li","is_ca":false},{"name":"Andrew J. Saykin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.136349498147738,"gpt":0.3711695822886595,"spread":0.2348200841409215,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008831818,0.0003175469,0.0003679415,0.0007979053,0.0005050739,0.0006013798,0.0004042286,0.0003575077,0.002351442],"category_scores_gemma":[0.001671227,0.0001721229,0.0002371084,0.0008704018,0.0002267504,0.0001838357,0.0007185709,0.0003611129,0.0004079124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003093819,"about_ca_system_score_gemma":0.0003650855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004645836,"about_ca_topic_score_gemma":0.01314573,"domain_scores_codex":[0.9994617,0.0001288303,0.00003328015,0.0002416925,0.00008155033,0.00005300244],"domain_scores_gemma":[0.9995134,0.00007047492,0.0001447082,0.00008773573,0.0001024535,0.0000812924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002418878,0.0002060944,0.8015363,0.0003057073,0.000890803,0.0003037339,0.0009621434,0.001225065,0.1270008,0.0009252097,0.005277901,0.05894734],"study_design_scores_gemma":[0.00005679351,0.0004047534,0.969609,0.00004693392,0.0003211894,0.0008910074,0.0002395401,0.001957031,0.01659659,0.001551396,0.008299018,0.0000268498],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9732875,0.001049987,0.007030609,0.0003121168,0.00002930661,0.000155689,0.0145028,0.0001480326,0.003484042],"genre_scores_gemma":[0.9770333,0.0003020454,0.01066962,0.0002709954,0.00003939688,0.0003303237,0.009483585,0.00005920707,0.001811564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004645836,"threshold_uncertainty_score":0.009237587,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2472944858","doi":"10.1186/s13148-016-0238-x","title":"Genome-wide placental DNA methylation analysis of severely growth-discordant monochorionic twins reveals novel epigenetic targets for intrauterine growth restriction","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Ontario Genomics; Genome Canada","keywords":"Epigenetics; DNA methylation; Intrauterine growth restriction; Biology; Genetics; Methylation; Monozygotic twin; Placenta; Bioinformatics; Gene; Pregnancy; Fetus; Gene expression","authors":[{"name":"Maian Roifman","is_ca":true},{"name":"Sanaa Choufani","is_ca":true},{"name":"Andrei L. Turinsky","is_ca":true},{"name":"Sascha Drewlo","is_ca":false},{"name":"Sarah Keating","is_ca":true},{"name":"Michael Brudno","is_ca":true},{"name":"John‏ Kingdom","is_ca":true},{"name":"Rosanna Weksberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05774212651478908,"gpt":0.3415905305245017,"spread":0.2838484040097126,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001981194,0.0002052348,0.0003041728,0.0006458674,0.0002565724,0.0002245662,0.0001895543,0.0002390581,0.001028778],"category_scores_gemma":[0.0007305628,0.0001660703,0.000273312,0.0002896777,0.000212097,0.00005713967,0.0003653819,0.0002240354,0.00009631618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001744522,"about_ca_system_score_gemma":0.0001318294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002419837,"about_ca_topic_score_gemma":0.002914741,"domain_scores_codex":[0.9997604,0.00003012484,0.00002149116,0.00009070061,0.00006527315,0.00003195669],"domain_scores_gemma":[0.9997678,0.00004184394,0.0000747108,0.00003556652,0.00003366002,0.00004647866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001388685,0.00003880718,0.2837918,0.00006817839,0.0002321017,0.001644294,0.0006698067,0.0002237008,0.7029715,0.0001749972,0.0001626211,0.008633561],"study_design_scores_gemma":[0.0000150126,0.000178824,0.9442313,0.000009592849,0.000113006,0.005984991,0.0002394675,0.0007647838,0.04771554,0.0001393522,0.0005995817,0.000008634441],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988269,0.0001516466,0.0005179273,0.00001497264,0.000003433721,0.000006022914,0.0002200589,0.000004645859,0.0002542819],"genre_scores_gemma":[0.9989057,0.00006288421,0.0005541581,0.00001566321,0.000001389567,0.000007429322,0.0002530749,0.000005326827,0.0001943843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002419837,"threshold_uncertainty_score":0.004811466,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2608488687","doi":"10.1186/s13148-017-0345-3","title":"Epigenetic changes in blood leukocytes following an omega-3 fatty acid supplementation","year":2017,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Fatty Acid Research and Health","field":"Nursing","cited_by":97,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"Human genetics; Epigenetics; Omega; Medicine; Bioinformatics; Immunology; Biology; Physiology; Biochemistry; Gene","authors":[{"name":"Bénédicte L. Tremblay","is_ca":true},{"name":"Frédéric Guénard","is_ca":true},{"name":"Iwona Rudkowska","is_ca":true},{"name":"Simone Lemieux","is_ca":true},{"name":"Patrick Couture","is_ca":true},{"name":"Marie‐Claude Vohl","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1231746861883628,"gpt":0.4528934430303398,"spread":0.329718756841977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001571497,0.0001318672,0.0002119941,0.0002385301,0.0001170539,0.0002051287,0.00008286299,0.0001750437,0.001046976],"category_scores_gemma":[0.000312982,0.00009017799,0.0001760142,0.0002543358,0.00009306976,0.00008202774,0.0001606084,0.0001562327,0.0001289256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001268629,"about_ca_system_score_gemma":0.0001222997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001578311,"about_ca_topic_score_gemma":0.002092822,"domain_scores_codex":[0.9998794,0.00003016468,0.000008250489,0.00003688759,0.00002903333,0.00001621121],"domain_scores_gemma":[0.9999243,0.00001500605,0.00003067383,0.000005860403,0.00001537067,0.000008797674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003014342,0.00009667882,0.1042091,0.0002444201,0.0001879643,0.0002596434,0.0004411235,0.0002452789,0.8334094,0.0001600952,0.0002496643,0.05748226],"study_design_scores_gemma":[0.00005932693,0.0009100467,0.8200973,0.00006079415,0.0002457207,0.0005370786,0.0004184139,0.00126588,0.1725108,0.0004601482,0.003415175,0.00001930978],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945269,0.002057769,0.001972676,0.00008561803,0.00001273528,0.00001592343,0.0005998576,0.00003566511,0.0006928751],"genre_scores_gemma":[0.9955257,0.0009195974,0.001664846,0.0000850189,0.000005903569,0.00003005735,0.00035409,0.000007860686,0.001406848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001578311,"threshold_uncertainty_score":0.003502488,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2796003820","doi":"10.1186/s13148-018-0463-6","title":"Epigenetic regulation of placental gene expression in transcriptional subtypes of preeclampsia","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":95,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; University of British Columbia; BC Children's Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; BC Children's Hospital","keywords":"Epigenetics; Biology; CpG site; DNA methylation; Epigenome; Gene; Methylation; Gene expression; Regulation of gene expression; Transcriptome; Genetics; Transcriptional regulation; Microarray; Gene cluster; Differentially methylated regions; Microarray analysis techniques; Promoter; Human genetics; Gene expression profiling","authors":[{"name":"Katherine Leavey","is_ca":true},{"name":"Samantha L. Wilson","is_ca":true},{"name":"Shannon Bainbridge","is_ca":true},{"name":"Wendy P. Robinson","is_ca":true},{"name":"Brian Cox","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0575544254731545,"gpt":0.3514449436248903,"spread":0.2938905181517358,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002010831,0.0001183197,0.0001302921,0.0003144931,0.0001278789,0.0001999648,0.0001577532,0.0001238309,0.001351621],"category_scores_gemma":[0.0003496516,0.00007879414,0.0001039959,0.0002616464,0.0001493947,0.0000724183,0.0002489402,0.0001650025,0.0001463944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001765328,"about_ca_system_score_gemma":0.0001164006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008640004,"about_ca_topic_score_gemma":0.001431247,"domain_scores_codex":[0.9998887,0.00001685433,0.00000765961,0.00003712474,0.00002825414,0.00002144187],"domain_scores_gemma":[0.9998806,0.00003018549,0.00003942179,0.00001854574,0.00001760506,0.00001359171],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006966642,0.00003012333,0.2110986,0.0001031397,0.00006063333,0.0001922716,0.0003664093,0.0002541757,0.7685099,0.0002458527,0.0001619776,0.01828025],"study_design_scores_gemma":[0.000008807741,0.0001003986,0.933946,0.000008290916,0.00003603774,0.0007679269,0.00009643463,0.0005273658,0.06316327,0.0001771547,0.00116462,0.000003684774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968262,0.0006604987,0.00139783,0.00003720454,0.000002595236,0.000009937644,0.0004596722,0.00002251404,0.0005836468],"genre_scores_gemma":[0.9981335,0.0001564832,0.0006640564,0.00001645013,0.000003031181,0.00001131537,0.0004874307,0.000006010238,0.0005218246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001351621,"threshold_uncertainty_score":0.004521608,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118667725","doi":"10.1186/1868-7083-6-1","title":"The effects of olanzapine on genome-wide DNA methylation in the hippocampus and cerebellum","year":2014,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"DNA methylation; Biology; Epigenetics; Methylation; Methylated DNA immunoprecipitation; Gene; Genetics; Gene expression","authors":[{"name":"Melkaye G. Melka","is_ca":true},{"name":"Benjamin I. Laufer","is_ca":true},{"name":"Patrick P. McDonald","is_ca":true},{"name":"Christina A. Castellani","is_ca":true},{"name":"Nagalingam Rajakumar","is_ca":true},{"name":"Richard O’Reilly","is_ca":true},{"name":"Shiva M. Singh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01366863641321417,"gpt":0.3002691831916813,"spread":0.2866005467784671,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001008219,0.0002913239,0.0001984013,0.0003306838,0.0001125514,0.0001974399,0.000177527,0.0001767669,0.001332626],"category_scores_gemma":[0.0001314726,0.00008210084,0.0002581157,0.0001506659,0.0001225498,0.00007456113,0.0001456641,0.000239758,0.0001207249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004720299,"about_ca_system_score_gemma":0.0002527228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003392125,"about_ca_topic_score_gemma":0.007013732,"domain_scores_codex":[0.9999181,0.00001089066,0.000006173933,0.00002372754,0.00002226249,0.00001881106],"domain_scores_gemma":[0.9999084,0.0000093408,0.00004099312,0.000006972105,0.00001245113,0.00002186573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003293254,0.00006804697,0.008692122,0.0001266087,0.000103438,0.0001123569,0.00004029808,0.0001569318,0.9770548,0.00003666569,0.0001565029,0.01015886],"study_design_scores_gemma":[0.0001385326,0.002619071,0.4779158,0.00003365276,0.0003955239,0.0008208225,0.0001874734,0.001196096,0.5142761,0.0001893639,0.002202351,0.00002510979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959372,0.002234502,0.0003871058,0.0001005753,0.00001509649,0.00001096687,0.0006605989,0.00006145042,0.0005923917],"genre_scores_gemma":[0.9979144,0.0006649015,0.0003232924,0.00004788268,0.000003720793,0.00001527251,0.00039293,0.000009551061,0.0006280994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003392125,"threshold_uncertainty_score":0.006744742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2947973160","doi":"10.1186/s13148-019-0682-5","title":"Identification of dynamic glucocorticoid-induced methylation changes at the FKBP5 locus","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; Simon Fraser University","funders":"European Research Council; Canadian Institutes of Health Research; Bundesministerium für Bildung und Forschung","keywords":"dNaM; FKBP5; DNA methylation; Glucocorticoid receptor; Epigenetics; Methylation; Locus (genetics); Biology; SNP; Differentially methylated regions; Bisulfite sequencing; In silico; Genetics; Glucocorticoid; Internal medicine; Endocrinology; Medicine; Genotype; Gene; Single-nucleotide polymorphism; Gene expression","authors":[{"name":"Tobias Wiechmann","is_ca":false},{"name":"Simone Röh","is_ca":false},{"name":"Susann Sauer","is_ca":false},{"name":"Darina Czamara","is_ca":false},{"name":"Janine Arloth","is_ca":false},{"name":"Maik Ködel","is_ca":false},{"name":"Madita Beintner","is_ca":false},{"name":"Lisanne Knop","is_ca":false},{"name":"Andreas Menke","is_ca":false},{"name":"Elisabeth B. Binder","is_ca":false},{"name":"Nadine Provençal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02631480176989289,"gpt":0.3506405407187915,"spread":0.3243257389488986,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000177745,0.000201912,0.0002216853,0.0002518079,0.0001615346,0.0002006777,0.0001692522,0.0002340731,0.001852497],"category_scores_gemma":[0.0003823814,0.0001108391,0.0001939367,0.00018978,0.0001891396,0.00007278996,0.000215976,0.0002705351,0.0002288346],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000291239,"about_ca_system_score_gemma":0.0001770143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003197425,"about_ca_topic_score_gemma":0.00468282,"domain_scores_codex":[0.9998521,0.00001624035,0.000007808618,0.0000709204,0.00002679081,0.00002603845],"domain_scores_gemma":[0.9998017,0.00003954033,0.0000756634,0.00002474604,0.00003183229,0.00002650464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005827954,0.00001895914,0.059524,0.0001167618,0.0001067044,0.0001276256,0.0001515922,0.0002176953,0.9275278,0.000100437,0.0001867733,0.0113389],"study_design_scores_gemma":[0.00001299428,0.000239399,0.8642532,0.0000212157,0.00009523353,0.000654847,0.0001021698,0.0007362756,0.1316565,0.0002247201,0.001986757,0.00001668476],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909724,0.001648962,0.0050848,0.00009614784,0.00002046887,0.00001824074,0.001503889,0.00007061764,0.0005845802],"genre_scores_gemma":[0.9971891,0.0002036699,0.001365311,0.00004606333,0.000008078482,0.0000167719,0.0006389859,0.00001088793,0.0005209864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003197425,"threshold_uncertainty_score":0.00635767,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2993489868","doi":"10.1186/s13148-019-0766-2","title":"The central nervous system tumor methylation classifier changes neuro-oncology practice for challenging brain tumor diagnoses and directly impacts patient care","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; University of Toronto; University Health Network; Princess Margaret Cancer Centre","funders":"Brain Tumour Charity","keywords":"Brain tumor; Medicine; Medical diagnosis; Neurology; Central nervous system; Human genetics; Oncology; Patient care; Internal medicine; Bioinformatics; Intensive care medicine; Pathology; Biology; Psychiatry; Nursing","authors":[{"name":"Shirin Karimi","is_ca":true},{"name":"Jeffrey Zuccato","is_ca":true},{"name":"Yasin Mamatjan","is_ca":true},{"name":"Sheila Mansouri","is_ca":true},{"name":"Suganth Suppiah","is_ca":true},{"name":"Farshad Nassiri","is_ca":true},{"name":"Phedias Diamandis","is_ca":true},{"name":"David G. Muñoz","is_ca":true},{"name":"Kenneth Aldape","is_ca":true},{"name":"Gelareh Zadeh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03788344725762592,"gpt":0.3600271935792914,"spread":0.3221437463216655,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003408215,0.0002280013,0.0002586616,0.0008322519,0.000608078,0.001305232,0.0006696641,0.0004531563,0.001818706],"category_scores_gemma":[0.01316097,0.0001109511,0.0002019432,0.0005936773,0.0004354554,0.0006391064,0.001091481,0.000552017,0.0006288886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001207106,"about_ca_system_score_gemma":0.001891083,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002609838,"about_ca_topic_score_gemma":0.006662557,"domain_scores_codex":[0.9976643,0.0007893659,0.0002638516,0.0003480082,0.0007807196,0.000153768],"domain_scores_gemma":[0.9937751,0.001681779,0.00225466,0.0002862311,0.001251698,0.0007504115],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001560792,0.0001493137,0.7948357,0.0001015953,0.00005575262,0.001095787,0.001047728,0.001084461,0.005511378,0.0001923943,0.003637631,0.1921322],"study_design_scores_gemma":[0.00003039807,0.0009137555,0.9308512,0.0003615659,0.0001813877,0.01320211,0.004169344,0.01624938,0.01553105,0.001307687,0.01712902,0.00007313918],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9836488,0.001145155,0.004898099,0.004402657,0.00008476136,0.00009885104,0.0002178793,0.0002131309,0.005290664],"genre_scores_gemma":[0.9891363,0.0004268433,0.009428786,0.0003902246,0.00004606372,0.00002192656,0.0001125592,0.0000285888,0.0004086191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003408215,"threshold_uncertainty_score":0.01802456,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2737338545","doi":"10.1186/s13148-017-0371-1","title":"Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1","year":2017,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Diamantina Institute, University of Queensland; Canadian Institutes of Health Research; Hunter Medical Research Institute; Multiple Sclerosis Australia","keywords":"DNA methylation; Epigenetics; Differentially methylated regions; Multiple sclerosis; Human leukocyte antigen; Major histocompatibility complex; Methylation; Biology; Cohort; Oncology; Immunology; Genetics; Internal medicine; Medicine; Gene; Gene expression; Antigen","authors":[{"name":"Vicki E. Maltby","is_ca":false},{"name":"Rod A. Lea","is_ca":false},{"name":"Katherine Sanders","is_ca":false},{"name":"Nicole White","is_ca":false},{"name":"Miles C. Benton","is_ca":false},{"name":"Rodney J. Scott","is_ca":false},{"name":"Jeannette Lechner‐Scott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07427371494508753,"gpt":0.3300210336429564,"spread":0.2557473186978689,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001939151,0.0001849243,0.0003054159,0.000524235,0.0002090054,0.0002452568,0.0001647419,0.0002391812,0.003009208],"category_scores_gemma":[0.0008162845,0.000164978,0.0001857418,0.0004146022,0.0002009555,0.00009052548,0.0001742771,0.000272621,0.0002917971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001245429,"about_ca_system_score_gemma":0.00009977454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001807599,"about_ca_topic_score_gemma":0.00170614,"domain_scores_codex":[0.9997836,0.00004648254,0.00001663048,0.00008277744,0.00003441948,0.00003604084],"domain_scores_gemma":[0.9996045,0.00009652069,0.0001461029,0.00004291396,0.00003924655,0.00007080817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002445207,0.00005739682,0.7790486,0.00006447564,0.0002539754,0.0004327818,0.0003113438,0.0001927272,0.2048193,0.00006053035,0.0002005674,0.01211316],"study_design_scores_gemma":[0.00001541683,0.0001090115,0.9960243,0.000003787212,0.00004863473,0.0008103239,0.00005661789,0.0001855219,0.002514672,0.0000445628,0.0001835984,0.000003582386],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992725,0.0001933932,0.0001520711,0.00001929539,0.000002335403,0.000002525196,0.0001382857,0.000008602111,0.0002109631],"genre_scores_gemma":[0.9994838,0.00005111596,0.0001122515,0.00001028352,0.000004328788,0.000003739293,0.0001064568,0.000004595647,0.0002234355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003009208,"threshold_uncertainty_score":0.01006675,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2737752879","doi":"10.1186/s13148-017-0370-2","title":"Maternal blood contamination of collected cord blood can be identified using DNA methylation at three CpGs","year":2017,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Prenatal Screening and Diagnostics","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Learning Partnership; BC Children's Hospital; University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Medical Research Council; National Institutes of Health; Signe ja Ane Gyllenbergin Säätiö; Jane ja Aatos Erkon Säätiö; Novo Nordisk Fonden; Foundation for the National Institutes of Health; Academy of Finland; Novo Nordisk; South African Medical Research Council; Päivikki ja Sakari Sohlbergin Säätiö; National Research Foundation; Emil Aaltosen Säätiö; AllerGen; Canadian Institutes of Health Research; Suomen Lääketieteen Säätiö; Helsingin Yliopisto; Bill and Melinda Gates Foundation","keywords":"dNaM; Cord blood; Pyrosequencing; DNA methylation; Epigenetics; Biology; Contamination; Population; Cohort; Medicine; Physiology; Andrology; Bioinformatics; Computational biology; Genetics; Internal medicine; Environmental health; Gene; Ecology","authors":[{"name":"Alexander M. Morin","is_ca":true},{"name":"Evan Gatev","is_ca":true},{"name":"Lisa M. McEwen","is_ca":true},{"name":"Julia L. MacIsaac","is_ca":true},{"name":"David Lin","is_ca":true},{"name":"Nastassja Koen","is_ca":false},{"name":"Darina Czamara","is_ca":false},{"name":"Katri Räikkönen","is_ca":false},{"name":"Heather J. Zar","is_ca":false},{"name":"Karestan C. Koenen","is_ca":false},{"name":"Dan J. Stein","is_ca":true},{"name":"Michael S. Kobor","is_ca":true},{"name":"Meaghan J. Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1221767889658162,"gpt":0.3963754564067263,"spread":0.2741986674409101,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002651681,0.0003724108,0.0003561632,0.001096607,0.0003547139,0.0007555831,0.0005406428,0.0005984948,0.001646698],"category_scores_gemma":[0.007492893,0.0003117943,0.0004181239,0.001311087,0.0005418435,0.0002079582,0.0006086354,0.0005523749,0.0003861749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000349677,"about_ca_system_score_gemma":0.0003815763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001647116,"about_ca_topic_score_gemma":0.0027237,"domain_scores_codex":[0.9971637,0.0006846607,0.0002587471,0.0007140261,0.0010366,0.0001422763],"domain_scores_gemma":[0.9950089,0.001776525,0.001939089,0.0005349817,0.0006254832,0.0001149938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007314984,0.00005982698,0.7640789,0.0005486953,0.0005864725,0.0008752035,0.0007999977,0.0006781074,0.162884,0.0008201834,0.001056483,0.06688063],"study_design_scores_gemma":[0.00002410586,0.0005305712,0.7396618,0.0003155497,0.0005978465,0.004579209,0.0003567353,0.002553001,0.2366425,0.001521948,0.01316556,0.00005119413],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9259546,0.005646586,0.0597777,0.0004548784,0.0001114376,0.0001534265,0.00373399,0.0003624774,0.003804807],"genre_scores_gemma":[0.9667912,0.001363933,0.0283804,0.0004243289,0.00004521498,0.0001354777,0.001668845,0.00007090916,0.001119785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002651681,"threshold_uncertainty_score":0.0140236,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162833751","doi":"10.1186/1868-7083-6-14","title":"Acetylsalicylic acid, aging and coronary artery disease are associated with ABCA1 DNA methylation in men","year":2014,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Cholesterol and Lipid Metabolism","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Cégep de Chicoutimi; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Université de Sherbrooke; Fonds de Recherche du Québec - Santé; Diabète Québec","keywords":"Coronary artery disease; DNA methylation; Medicine; Human genetics; Disease; Methylation; Internal medicine; Cardiology; Bioinformatics; DNA; Genetics; Biology; Gene","authors":[{"name":"Simon‐Pierre Guay","is_ca":true},{"name":"Cécilia Légaré","is_ca":true},{"name":"Andrée-Anne Houde","is_ca":true},{"name":"Patrick Mathieu","is_ca":true},{"name":"Yohan Bossé","is_ca":true},{"name":"Luigi Bouchard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03846457396152479,"gpt":0.3268112549315287,"spread":0.2883466809700039,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002427702,0.0001812815,0.0002066657,0.0003443028,0.000231393,0.0002247506,0.00008549842,0.000206305,0.001773159],"category_scores_gemma":[0.0006938273,0.000149406,0.0002480969,0.0003975139,0.0001565196,0.0001189261,0.0001435325,0.0001953237,0.000167009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008776171,"about_ca_system_score_gemma":0.0001028434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001555117,"about_ca_topic_score_gemma":0.001470122,"domain_scores_codex":[0.9998734,0.00003020497,0.00001107524,0.00004571924,0.00002225782,0.00001731009],"domain_scores_gemma":[0.9996891,0.00006490488,0.0001355373,0.00002505898,0.00002904121,0.00005640474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003931394,0.00002303481,0.992077,0.00001914841,0.0001064105,0.0001313141,0.0001158989,0.00002793316,0.003409998,0.00002218477,0.00005974923,0.003614183],"study_design_scores_gemma":[0.000003272708,0.00008807718,0.9991092,0.000002013428,0.00004104764,0.0002762941,0.00003085805,0.00005234495,0.0002317097,0.0000204896,0.0001430613,0.000001542183],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985065,0.0009534849,0.0001230214,0.00002288108,0.000005839438,0.000003293728,0.0001343599,0.000005637126,0.0002450229],"genre_scores_gemma":[0.9994581,0.0001654438,0.00008708711,0.00001368932,0.000008139243,0.000002401499,0.00006691447,0.000001135877,0.0001970866],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001773159,"threshold_uncertainty_score":0.005931795,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159753430","doi":"10.1186/s13148-015-0118-9","title":"Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells","year":2015,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"Ministero dello Sviluppo Economico; Cancer Research UK; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute; Ontario Genomics; Genome Canada; Wellcome Trust; GlaxoSmithKline; European Commission; Pfizer; Ovarian Cancer Action; Engineering and Physical Sciences Research Council; Eli Lilly and Company","keywords":"Histone methyltransferase; Gene silencing; EZH2; Biology; Histone; Histone methylation; Chromatin; Chromatin immunoprecipitation; Gene knockdown; Methyltransferase; Cancer research; RNA interference; Gene expression; Methylation; Cell biology; DNA methylation; Gene; Biochemistry; Promoter; RNA","authors":[{"name":"Edward Curry","is_ca":false},{"name":"Ian Green","is_ca":false},{"name":"Nadine Chapman‐Rothe","is_ca":false},{"name":"Elham Shamsaei","is_ca":false},{"name":"Sarah Kandil","is_ca":false},{"name":"Fanny Cherblanc","is_ca":false},{"name":"Luke Payne","is_ca":false},{"name":"Emma Bell","is_ca":false},{"name":"Thota Ganesh","is_ca":false},{"name":"Nitipol Srimongkolpithak","is_ca":false},{"name":"Joachim Caron","is_ca":false},{"name":"Fengling Li","is_ca":true},{"name":"Anthony G. Uren","is_ca":false},{"name":"James P. Snyder","is_ca":false},{"name":"Masoud Vedadi","is_ca":true},{"name":"Matthew J. Fuchter","is_ca":false},{"name":"Robert Brown","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06994144965050621,"gpt":0.3805285219737153,"spread":0.3105870723232091,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001616062,0.0004531643,0.0005103881,0.0002751804,0.0001406888,0.0002890297,0.0002483513,0.0002899189,0.002323661],"category_scores_gemma":[0.0001070638,0.0001187755,0.0002826236,0.0002781657,0.0001399755,0.0001475523,0.0001676428,0.000696146,0.0005324216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003237271,"about_ca_system_score_gemma":0.0002251193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005653285,"about_ca_topic_score_gemma":0.001458353,"domain_scores_codex":[0.9998326,0.00002092352,0.00001647209,0.00003008883,0.00006767934,0.00003220143],"domain_scores_gemma":[0.9999212,0.00001628281,0.00001403896,0.00001074029,0.00001677957,0.000020876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002016067,0.0001132776,0.0001496425,0.00007392749,0.00001546554,0.00002273871,0.000009854986,0.0000697498,0.9964374,0.00003611001,0.0001375932,0.002732697],"study_design_scores_gemma":[0.00003312769,0.0007406506,0.001787524,0.000003633002,0.00003166857,0.000094937,0.000009086315,0.0002959814,0.9950045,0.00001186147,0.001984299,0.000002795014],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984848,0.005674961,0.003116258,0.0002230548,0.00008221996,0.0000971812,0.001177265,0.0003323611,0.004448734],"genre_scores_gemma":[0.9881505,0.002354006,0.002861377,0.00009062468,0.00001617773,0.00009729437,0.00166817,0.00003076031,0.004731182],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002323661,"threshold_uncertainty_score":0.007773399,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2515141406","doi":"10.1186/s13148-016-0254-x","title":"Identification of a methylation profile for DNMT1-associated autosomal dominant cerebellar ataxia, deafness, and narcolepsy","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; London Health Sciences Centre; McMaster University; Western University; Children's Hospital of Eastern Ontario; Children’s Health Research Institute; University of Ottawa","funders":"Canadian Institutes of Health Research; Children's Hospital of Eastern Ontario Foundation; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"DNA methylation; Genetics; Biology; DNA methyltransferase; Methylation; CpG site; Epigenetics; Epigenomics; Ataxia; Gene; Gene expression; Neuroscience","authors":[{"name":"Kristin D. Kernohan","is_ca":true},{"name":"Laila C. Schenkel","is_ca":true},{"name":"Lijia Huang","is_ca":true},{"name":"Amanda Smith","is_ca":true},{"name":"Guillaume Paré","is_ca":true},{"name":"Peter Ainsworth","is_ca":true},{"name":"Kym M. Boycott","is_ca":true},{"name":"Jodi Warman‐Chardon","is_ca":true},{"name":"Bekim Sadiković","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06233779080184717,"gpt":0.3565178564107731,"spread":0.294180065608926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001432275,0.0002612307,0.0001699228,0.0007435583,0.0002000693,0.0001643656,0.0001241799,0.0002607315,0.001390177],"category_scores_gemma":[0.0004546036,0.00008011305,0.0001266976,0.0002512654,0.0001335942,0.00006284657,0.0001483618,0.0001850741,0.0002362367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002364812,"about_ca_system_score_gemma":0.00009336059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002363334,"about_ca_topic_score_gemma":0.003059864,"domain_scores_codex":[0.9998912,0.00001053688,0.00001174974,0.00004398675,0.00002784558,0.00001466451],"domain_scores_gemma":[0.999822,0.00003195446,0.00005826894,0.00001320599,0.00003979452,0.00003481956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004419054,0.0000417667,0.3187411,0.00007420137,0.00008691067,0.001638879,0.0003663004,0.0002501872,0.6663356,0.00005479924,0.0002342001,0.0117342],"study_design_scores_gemma":[0.00001458252,0.0003127431,0.9053339,0.00001216882,0.000125189,0.01424079,0.0001680219,0.001018223,0.07741176,0.0000783132,0.001272984,0.00001128994],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983795,0.0002834513,0.0005975649,0.00001841694,0.000002118216,0.00001015584,0.0003997573,0.00002362093,0.0002854337],"genre_scores_gemma":[0.9985726,0.0000880167,0.0006585539,0.00001824823,0.000002497239,0.000006957924,0.0004259111,0.000007994481,0.0002192737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002363334,"threshold_uncertainty_score":0.004699111,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165918808","doi":"10.1186/1868-7083-4-10","title":"LINE-1 methylation in visceral adipose tissue of severely obese individuals is associated with metabolic syndrome status and related phenotypes","year":2012,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University and Génome Québec Innovation Centre; Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","funders":"Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Canada Research Chairs; Canadian Institutes of Health Research; Université Laval","keywords":"Metabolic syndrome; Internal medicine; Medicine; Endocrinology; Quartile; Meth-; Adipose tissue; Obesity; Blood pressure; DNA methylation; Waist; Odds ratio; Physiology; Biology; Confidence interval; Genetics; Chemistry","authors":[{"name":"Valérie Turcot","is_ca":true},{"name":"André Tchernof","is_ca":true},{"name":"Yves Deshaies","is_ca":true},{"name":"Louis Përusse","is_ca":true},{"name":"Alexandre Bélisle","is_ca":true},{"name":"Simon Marceau","is_ca":true},{"name":"Simon Biron","is_ca":true},{"name":"Odette Lescelleur","is_ca":true},{"name":"Laurent Biertho","is_ca":true},{"name":"Marie‐Claude Vohl","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02711592490107131,"gpt":0.3297061407320625,"spread":0.3025902158309912,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001242264,0.0001619576,0.0001641351,0.0003273077,0.0001331012,0.0002167609,0.0001198072,0.0002086932,0.001480462],"category_scores_gemma":[0.0005436855,0.000124913,0.0001298574,0.0003029584,0.0001408125,0.00008229311,0.0001778257,0.0002433755,0.0001299125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007319905,"about_ca_system_score_gemma":0.00004812678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007544603,"about_ca_topic_score_gemma":0.001185018,"domain_scores_codex":[0.9999243,0.00001775617,0.000007482471,0.00002920114,0.00001195682,0.000009354952],"domain_scores_gemma":[0.9996356,0.00006642523,0.0002037141,0.00002387448,0.0000241413,0.00004610369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007480772,0.00002558443,0.9762818,0.00002311471,0.00008498195,0.0001124202,0.00009634391,0.0000812536,0.01920887,0.00002251471,0.00005805432,0.003256911],"study_design_scores_gemma":[0.000003659799,0.00007580363,0.998812,0.000002670232,0.00001942273,0.0003048498,0.00004285418,0.0001160469,0.0005458129,0.0000209414,0.00005419694,0.000001849124],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999505,0.0001426151,0.0001218763,0.00001326234,0.000001357575,0.000001933098,0.0001111977,0.000003202368,0.00009964136],"genre_scores_gemma":[0.9995455,0.00004354468,0.0001340598,0.000009695481,0.000002243538,0.000002748911,0.0001384563,0.000001525423,0.0001220746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001480462,"threshold_uncertainty_score":0.00495261,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2263790045","doi":"10.1186/s13148-016-0182-9","title":"Identification of the epigenetic reader CBX2 as a potential drug target in advanced prostate cancer","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency; University of British Columbia; Université Laval","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; BC Cancer Foundation; Terry Fox Research Institute; Michael Smith Health Research BC; Prostate Cancer Canada","keywords":"Prostate cancer; Epigenetics; Identification (biology); Cancer; Medicine; Human genetics; Drug; Drug discovery; Bioinformatics; Computational biology; Internal medicine; Biology; Oncology; Pharmacology; Genetics; Gene","authors":[{"name":"Pier‐Luc Clermont","is_ca":true},{"name":"Francesco Crea","is_ca":false},{"name":"Yan Ting Chiang","is_ca":false},{"name":"Dong Lin","is_ca":false},{"name":"Amy Zhang","is_ca":false},{"name":"James Z. L. Wang","is_ca":false},{"name":"Abhijit Parolia","is_ca":false},{"name":"Rebecca Wu","is_ca":false},{"name":"Hui Xue","is_ca":false},{"name":"Yuwei Wang","is_ca":false},{"name":"Jiarui Ding","is_ca":true},{"name":"Kelsie L. Thu","is_ca":false},{"name":"Wan L. Lam","is_ca":false},{"name":"Sohrab P. Shah","is_ca":true},{"name":"Colin C. Collins","is_ca":false},{"name":"Yuzhuo Wang","is_ca":true},{"name":"Cheryl D. Helgason","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01341067941024567,"gpt":0.3341558411526209,"spread":0.3207451617423753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002096305,0.0002893437,0.0003070649,0.0003107284,0.0001449098,0.0003933297,0.0002536413,0.0002274405,0.002284048],"category_scores_gemma":[0.0001254835,0.000083206,0.0001478779,0.0002236546,0.0002532264,0.0001784226,0.0002314252,0.0004475931,0.0003155286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005589041,"about_ca_system_score_gemma":0.0003315251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005797332,"about_ca_topic_score_gemma":0.001346741,"domain_scores_codex":[0.9999355,0.000009676591,0.000003231822,0.00001529449,0.00002387558,0.00001242907],"domain_scores_gemma":[0.9999381,0.00001057648,0.00001497246,0.000006206018,0.0000113489,0.00001868072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004112382,0.00006798469,0.003621617,0.0001510357,0.0000198194,0.000243405,0.00002146516,0.0005572541,0.9756523,0.0005720246,0.0003533357,0.01832856],"study_design_scores_gemma":[0.00007393467,0.0007444792,0.02195915,0.0000244264,0.00004642537,0.001198295,0.00004036053,0.002442424,0.9609613,0.0003551996,0.01214287,0.00001118408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9687815,0.01977439,0.005500711,0.0008724963,0.00006308394,0.00008065735,0.0006079749,0.0001693757,0.004149868],"genre_scores_gemma":[0.9914169,0.002807945,0.002578585,0.0001248124,0.0000262379,0.00002328159,0.0004293412,0.000009709895,0.002583174],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002284048,"threshold_uncertainty_score":0.007640898,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2957019321","doi":"10.1186/s13148-019-0684-3","title":"Functional DNA methylation signatures for autism spectrum disorder genomic risk loci: 16p11.2 deletions and CHD8 variants","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Holland Bloorview Kids Rehabilitation Hospital; Centre for Addiction and Mental Health; McMaster University; Western University; Children's Hospital of Eastern Ontario; University of Alberta; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Hospital for Sick Children; Centre for Applied Genomics; Government of Ontario; Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Rare Disease Foundation; Ontario Brain Institute; University of Toronto; GlaxoSmithKline","keywords":"dNaM; Epigenetics; DNA methylation; Genetics; Biology; Autism spectrum disorder; Epigenome; Human genetics; Gene; Copy-number variation; Autism; Bioinformatics; Genome; Medicine; Gene expression","authors":[{"name":"M. Siu","is_ca":true},{"name":"Darci T. Butcher","is_ca":true},{"name":"Andrei L. Turinsky","is_ca":true},{"name":"Cheryl Cytrynbaum","is_ca":true},{"name":"Dimitri J. Stavropoulos","is_ca":true},{"name":"Susan Walker","is_ca":true},{"name":"Oana Caluseriu","is_ca":true},{"name":"M. Carter","is_ca":true},{"name":"Y. Lou","is_ca":true},{"name":"Rob Nicolson","is_ca":true},{"name":"Stelios Georgiades","is_ca":true},{"name":"Péter Szatmári","is_ca":true},{"name":"Evdokia Anagnostou","is_ca":true},{"name":"Stephen W. Scherer","is_ca":true},{"name":"Sanaa Choufani","is_ca":true},{"name":"Michael Brudno","is_ca":true},{"name":"Rosanna Weksberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05174583356869899,"gpt":0.3448165068759574,"spread":0.2930706733072584,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001817133,0.0002166845,0.0002092349,0.000840341,0.0001544508,0.0002076753,0.0001491586,0.0002670934,0.00153313],"category_scores_gemma":[0.0006254746,0.0001318691,0.0001667043,0.000365912,0.0001397277,0.00008559542,0.0002858758,0.0001871714,0.0001485439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001539935,"about_ca_system_score_gemma":0.00008182993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001731156,"about_ca_topic_score_gemma":0.003210295,"domain_scores_codex":[0.9998292,0.00002312487,0.00001459837,0.00008090741,0.00002867291,0.00002354055],"domain_scores_gemma":[0.9997991,0.00005476915,0.00007337439,0.00001783731,0.00002556681,0.00002929611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008211808,0.00002888387,0.5006217,0.00009523406,0.0001923145,0.0003222864,0.0003858274,0.0002993868,0.484175,0.0001310412,0.0002472265,0.01267983],"study_design_scores_gemma":[0.0000181233,0.00008603853,0.9761066,0.000006146051,0.00006366788,0.001238261,0.00007936521,0.0007568504,0.02099477,0.000167887,0.0004745244,0.000007846792],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971952,0.0003259735,0.0008754883,0.00002442669,0.000003278128,0.000008932777,0.001076891,0.00002515118,0.0004645884],"genre_scores_gemma":[0.9982229,0.0000623714,0.0007773703,0.00001845255,0.000002492882,0.00001607117,0.0006347804,0.000006223429,0.0002592414],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001731156,"threshold_uncertainty_score":0.005128801,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156665587","doi":"10.1186/1868-7083-6-19","title":"Epigenetic therapy of acute myeloid leukemia using 5-aza-2'-deoxycytidine (decitabine) in combination with inhibitors of histone methylation and deacetylation","year":2014,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"Université de Montréal","keywords":"Trichostatin A; Decitabine; EZH2; Epigenetics; Epigenetic therapy; Cancer research; Biology; Gene silencing; Chromatin; DNA methylation; Acetylation; PRC2; Histone; Methylation; Histone deacetylase; Genetics; Gene; Gene expression","authors":[{"name":"Richard L. Momparler","is_ca":true},{"name":"Sylvie Côté","is_ca":true},{"name":"Louise F. Momparler","is_ca":true},{"name":"Youssef Idaghdour","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05031231532236087,"gpt":0.3895590017751555,"spread":0.3392466864527947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001126487,0.0003112793,0.0003767467,0.000255722,0.0001373469,0.0001727792,0.0002407526,0.0001974019,0.001069488],"category_scores_gemma":[0.0001082693,0.00007702247,0.0001819499,0.000233271,0.0001246321,0.0001068949,0.0002302368,0.0004194787,0.0002434249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003260162,"about_ca_system_score_gemma":0.0002001676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006163624,"about_ca_topic_score_gemma":0.001537722,"domain_scores_codex":[0.9999192,0.00001585508,0.00000932302,0.000017984,0.00001881003,0.00001880373],"domain_scores_gemma":[0.9999672,0.000005514771,0.00001036145,0.000004562063,0.00000453365,0.000007839842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"nonrandomized_trial","study_design_scores_codex":[0.001394032,0.0003344201,0.0007902543,0.0003185434,0.00007368034,0.0002433072,0.00005241987,0.000788331,0.8984331,0.0004378808,0.000509112,0.09662481],"study_design_scores_gemma":[0.0008132096,0.006172691,0.01212689,0.0000480803,0.0002566919,0.00234936,0.0000371102,0.002180581,0.9392369,0.000221479,0.03654325,0.00001369973],"study_design_candidate":"nonrandomized_trial","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9535289,0.03119247,0.006917601,0.0004799832,0.0002622633,0.0002898061,0.0004613038,0.0003244316,0.006543232],"genre_scores_gemma":[0.9884928,0.006003458,0.003026379,0.0001593305,0.00004275328,0.00009554866,0.0003678369,0.00001385673,0.001798032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001069488,"threshold_uncertainty_score":0.003577769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3133587423","doi":"10.1186/s13148-021-01037-1","title":"Synergistic effects of type I PRMT and PARP inhibitors against non-small cell lung cancer cells","year":2021,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université Laval; Université de Montréal; McGill University","funders":"CIHR Skin Research Training Centre; Fonds de Recherche du Québec-Société et Culture","keywords":"Lung cancer; Combination therapy; Cancer research; Cancer; PARP inhibitor; Medicine; Methyltransferase; Targeted therapy; Pharmacology; Internal medicine; Biology; Poly ADP ribose polymerase; Biochemistry; Enzyme; DNA; Methylation","authors":[{"name":"Claudia Dominici","is_ca":true},{"name":"Nicolas Sgarioto","is_ca":true},{"name":"Zhenbao Yu","is_ca":true},{"name":"Laura Sesma-Sanz","is_ca":true},{"name":"Jean‐Yves Masson","is_ca":true},{"name":"Stéphane Richard","is_ca":true},{"name":"Noël J.‐M. Raynal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01003112780038929,"gpt":0.2924846336181623,"spread":0.2824535058177731,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001458627,0.0005560565,0.0005553286,0.000460442,0.0001805379,0.0002346398,0.0003004407,0.0002551046,0.002026728],"category_scores_gemma":[0.00009035265,0.0001465321,0.0005439532,0.0004280576,0.0001146057,0.000176207,0.0002528609,0.0004353692,0.0003943288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002142637,"about_ca_system_score_gemma":0.0002761555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004332894,"about_ca_topic_score_gemma":0.001522804,"domain_scores_codex":[0.9998697,0.00002041591,0.00001405214,0.00002635068,0.00004343026,0.00002601434],"domain_scores_gemma":[0.9999399,0.00001285604,0.00001433061,0.000006557586,0.000009374882,0.00001689343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009588493,0.0005158557,0.001070381,0.0004958644,0.0001035476,0.000185652,0.00003180502,0.0007695266,0.9725258,0.0001185411,0.0005283072,0.02269582],"study_design_scores_gemma":[0.0001908601,0.006162371,0.006634052,0.00002440845,0.0002036399,0.0007311497,0.00003536474,0.001385163,0.977958,0.0000479179,0.006612435,0.00001462049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9758833,0.01497308,0.001781009,0.0001930324,0.000100808,0.0001944837,0.001016731,0.0001508617,0.005706623],"genre_scores_gemma":[0.9891559,0.005469661,0.002229081,0.0001083241,0.00002596697,0.00009462122,0.0008848687,0.00001291626,0.00201871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002026728,"threshold_uncertainty_score":0.006780088,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2351397887","doi":"10.1186/s13148-016-0219-0","title":"DNA methylation mediates the effect of exposure to prenatal maternal stress on cytokine production in children at age 13½ years: Project Ice Storm","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Reproductive System and Pregnancy","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Douglas College; McGill University; Douglas Mental Health University Institute","funders":"Canadian Institutes of Health Research","keywords":"DNA methylation; Cytokine; Immunology; Methylation; Biology; Cytokine storm; Epigenetics; Mediation; In utero; Immune system; Genetics; Medicine; Gene; Internal medicine; Gene expression; Pregnancy; Fetus; Disease","authors":[{"name":"Lei Cao-Lei","is_ca":true},{"name":"Franz Veru","is_ca":true},{"name":"Guillaume Elgbeili","is_ca":true},{"name":"Moshe Szyf","is_ca":true},{"name":"David P. Laplante","is_ca":true},{"name":"Suzanne King","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02028546591530175,"gpt":0.307870905188718,"spread":0.2875854392734163,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003739346,0.0001719631,0.0001559256,0.0001818545,0.0002492256,0.0002298065,0.0002008599,0.0001744369,0.001835697],"category_scores_gemma":[0.000673469,0.0000975976,0.0001412087,0.000172011,0.0002945123,0.00007479129,0.0001987661,0.0002643117,0.00009287649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000758125,"about_ca_system_score_gemma":0.000974656,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06809774,"about_ca_topic_score_gemma":0.1107416,"domain_scores_codex":[0.9998268,0.00003778014,0.000004728369,0.0000428382,0.00003317254,0.00005465916],"domain_scores_gemma":[0.9995596,0.00009045367,0.000170582,0.00002154228,0.00005908412,0.00009863429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009523435,0.00005829834,0.9639257,0.00002802394,0.00007811104,0.000134917,0.000385997,0.0001223269,0.02993992,0.00005156968,0.00009686298,0.004225926],"study_design_scores_gemma":[0.000001783696,0.00008694233,0.9981508,0.000002568693,0.00001045727,0.00004342776,0.0000959211,0.00007322263,0.001422544,0.00001120107,0.0000999406,0.000001168833],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995148,0.00008311847,0.00007898792,0.00002451935,0.000001008277,0.000002997224,0.0001129895,0.000001199646,0.0001803718],"genre_scores_gemma":[0.9993862,0.00007186118,0.00009257753,0.00001339456,0.000001272012,0.000005391434,0.0000970828,0.000001012072,0.0003312165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06809774,"threshold_uncertainty_score":0.1354027,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2943557932","doi":"10.1186/s13148-019-0653-x","title":"Prenatal maternal antidepressants, anxiety, and depression and offspring DNA methylation: epigenome-wide associations at birth and persistence into early childhood","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Maternal Mental Health During Pregnancy and Postpartum","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Environmental Health Sciences; National Institute of Nursing Research; National Heart, Lung, and Blood Institute; National Institutes of Health; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Erasmus Medisch Centrum; Erasmus Universiteit Rotterdam; European Commission","keywords":"Pregnancy; Anxiety; Medicine; Offspring; Epigenome; DNA methylation; Depression (economics); Edinburgh Postnatal Depression Scale; Psychiatry; Obstetrics; Cord blood; Internal medicine; Biology; Genetics","authors":[{"name":"Andrés Cárdenas","is_ca":false},{"name":"Sabrina Faleschini","is_ca":true},{"name":"Andrea P. Cortés Hidalgo","is_ca":false},{"name":"Sheryl L. Rifas‐Shiman","is_ca":false},{"name":"Andrea Baccarelli","is_ca":false},{"name":"Dawn L. DeMeo","is_ca":false},{"name":"Augusto A. Litonjua","is_ca":false},{"name":"Alexander Neumann","is_ca":false},{"name":"Janine F. Felix","is_ca":false},{"name":"Vincent W. V. Jaddoe","is_ca":false},{"name":"Hanan El Marroun","is_ca":false},{"name":"Henning Tiemeier","is_ca":false},{"name":"Emily Oken","is_ca":false},{"name":"Marie‐France Hivert","is_ca":false},{"name":"Heather H. Burris","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0256483694259034,"gpt":0.3095590265849187,"spread":0.2839106571590154,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003280096,0.0001967538,0.0001848265,0.0002846908,0.0001966096,0.0003488114,0.0002656823,0.000353804,0.001656744],"category_scores_gemma":[0.001019946,0.0001874044,0.0003187253,0.000472297,0.0001225821,0.0001749314,0.000372603,0.0003223849,0.0001133565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002389863,"about_ca_system_score_gemma":0.0001949289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006817979,"about_ca_topic_score_gemma":0.008542574,"domain_scores_codex":[0.9997589,0.00004784285,0.00001488272,0.0001079567,0.00003028909,0.00004018894],"domain_scores_gemma":[0.9995555,0.0001013261,0.0001901073,0.00004699311,0.0000388101,0.00006725651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003864455,0.0000260688,0.9890656,0.00002861098,0.0002554562,0.00009731818,0.0001224923,0.0001015999,0.004932476,0.00005213341,0.0001597755,0.004771985],"study_design_scores_gemma":[0.000004156874,0.00003569886,0.9992622,0.000004755873,0.00004667626,0.0001080359,0.00001936537,0.00007422167,0.0002961602,0.0000218792,0.000125313,0.000001567529],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974459,0.0005855762,0.0003505348,0.00005803619,0.000003133486,0.000005360209,0.001293866,0.000007616344,0.0002499897],"genre_scores_gemma":[0.9981534,0.0003018284,0.0005052527,0.00003206773,0.000004308768,0.00001454951,0.0006650891,0.000004138883,0.0003193463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006817979,"threshold_uncertainty_score":0.01355654,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3112369087","doi":"10.1186/s13148-020-00988-1","title":"High-resolution analyses of human sperm dynamic methylome reveal thousands of novel age-related epigenetic alterations","year":2020,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; National Research Council Canada; McGill University and Génome Québec Innovation Centre; McGill University","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"DNA methylation; CpG site; Epigenome; Biology; Methylation; Epigenetics; Differentially methylated regions; Human genetics; Sperm; Genetics; Andrology; Gene; Medicine; Gene expression","authors":[{"name":"Mingju Cao","is_ca":true},{"name":"Xiaojian Shao","is_ca":true},{"name":"Peter Chan","is_ca":true},{"name":"Warren Cheung","is_ca":false},{"name":"Tony Kwan","is_ca":true},{"name":"Tomi Pastinen","is_ca":true},{"name":"Bernard Robaire","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1095152211219206,"gpt":0.4189905006740487,"spread":0.3094752795521282,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002492418,0.0001790198,0.0002598872,0.0004028054,0.0001669782,0.0002019179,0.0001623062,0.0002760089,0.001528868],"category_scores_gemma":[0.0004002002,0.0001469558,0.0003028879,0.0004645025,0.00009088721,0.0001256781,0.0002371394,0.0002356408,0.0003765596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001389621,"about_ca_system_score_gemma":0.0001328981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00165146,"about_ca_topic_score_gemma":0.003999165,"domain_scores_codex":[0.9999118,0.000008815554,0.000006161413,0.00003832594,0.00002160358,0.00001333373],"domain_scores_gemma":[0.9998222,0.00004905531,0.00005480867,0.00002068048,0.00003491641,0.00001831647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003863955,0.00004166264,0.2017109,0.0003018253,0.0003431104,0.0001361282,0.0001685955,0.001718795,0.7657038,0.0001616865,0.0006796924,0.02864748],"study_design_scores_gemma":[0.00001441069,0.0002227112,0.8994761,0.00001898438,0.0001756377,0.0005533306,0.00008574792,0.005132636,0.09037845,0.0002808147,0.003641124,0.00002007657],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822878,0.002647402,0.008678903,0.00008664806,0.00001089772,0.0000208655,0.005446986,0.0001329607,0.0006875491],"genre_scores_gemma":[0.9849466,0.0007733875,0.007414971,0.0001152019,0.00001648688,0.00002358962,0.005867966,0.00002385253,0.000818063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00165146,"threshold_uncertainty_score":0.005114555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2788635059","doi":"10.1186/s13148-017-0436-1","title":"The signature of liver cancer in immune cells DNA methylation","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University; McGill University","funders":"Canadian Institutes of Health Research; Beijing Municipal Science and Technology Commission; National Natural Science Foundation of China","keywords":"Hepatocellular carcinoma; Immune system; DNA methylation; Peripheral blood mononuclear cell; Immunology; Liver cancer; Immunotherapy; Cancer; Biology; Methylation; Medicine; Cancer research; Gene; Internal medicine; Gene expression; Genetics","authors":[{"name":"Yonghong Zhang","is_ca":false},{"name":"Sophie Petropoulos","is_ca":true},{"name":"Jinhua Liu","is_ca":false},{"name":"David Cheishvili","is_ca":true},{"name":"Rudy Zhou","is_ca":true},{"name":"Sergiy Dymov","is_ca":true},{"name":"Kang Li","is_ca":false},{"name":"Ning Li","is_ca":false},{"name":"Moshe Szyf","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02696051806644748,"gpt":0.3544362898326305,"spread":0.327475771766183,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001547243,0.00009862579,0.0001766306,0.0003241489,0.0001254232,0.0002116695,0.00008805461,0.000149583,0.001152191],"category_scores_gemma":[0.0003707653,0.00008849234,0.0001000626,0.0002494203,0.000167446,0.00008156683,0.0001872324,0.000197853,0.0002162216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000124461,"about_ca_system_score_gemma":0.0001165912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007298524,"about_ca_topic_score_gemma":0.001146518,"domain_scores_codex":[0.9998713,0.00002463904,0.000006519076,0.00005029092,0.00002755946,0.00001966213],"domain_scores_gemma":[0.9998649,0.00003142025,0.00004446115,0.00001635647,0.00002374115,0.00001914904],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006907844,0.00002212963,0.136208,0.00009085747,0.00007648397,0.0001638624,0.0002230865,0.0001940431,0.8389539,0.000207313,0.0002275418,0.02294204],"study_design_scores_gemma":[0.00001520617,0.0003081309,0.8419447,0.00001197123,0.00007004344,0.001597322,0.0001511688,0.001127142,0.1514874,0.0006350832,0.002641466,0.00001046935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939892,0.001223636,0.002477607,0.00009112226,0.00000988947,0.0000123062,0.00070765,0.00004833821,0.001440414],"genre_scores_gemma":[0.9981163,0.0002275432,0.0007783328,0.00004685773,0.000006080939,0.000009296843,0.0002576384,0.000005304229,0.0005527146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001152191,"threshold_uncertainty_score":0.003854454,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2803978842","doi":"10.1186/s13148-018-0453-8","title":"Peripheral blood epi-signature of Claes-Jensen syndrome enables sensitive and specific identification of patients and healthy carriers with pathogenic mutations in KDM5C","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Victoria Hospital; McMaster University; London Health Sciences Centre; Western University","funders":"Children's Health Foundation; London Health Sciences Centre; Children's Health Research Institute","keywords":"DNA methylation; Genetics; Biology; Human genetics; Epigenetics; Histone; Bioinformatics; Gene; Gene expression","authors":[{"name":"Laila C. Schenkel","is_ca":true},{"name":"Erfan Aref‐Eshghi","is_ca":true},{"name":"Cindy Skinner","is_ca":false},{"name":"Peter Ainsworth","is_ca":true},{"name":"Hanxin Lin","is_ca":true},{"name":"Guillaume Paré","is_ca":true},{"name":"David I. Rodenhiser","is_ca":true},{"name":"Charles E. Schwartz","is_ca":false},{"name":"Bekim Sadiković","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01118059083921972,"gpt":0.2754541032727756,"spread":0.2642735124335559,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001773037,0.0003072224,0.0002762843,0.000257244,0.000076601,0.0002227797,0.0001853676,0.0001903079,0.0008330012],"category_scores_gemma":[0.0007946994,0.00008979032,0.0002082465,0.0001321816,0.00007245899,0.00009986555,0.0002458624,0.0001545176,0.0001671657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001169341,"about_ca_system_score_gemma":0.0002059214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00345236,"about_ca_topic_score_gemma":0.003374073,"domain_scores_codex":[0.9999232,0.00001966383,0.000005523713,0.00003016646,0.00001127765,0.00001009894],"domain_scores_gemma":[0.9998384,0.00007041022,0.00002588368,0.00001857914,0.00002204989,0.0000246603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004055961,0.0002045408,0.5922282,0.0001402167,0.0003894761,0.001772219,0.0002224174,0.1040659,0.1675931,0.0006749504,0.001918079,0.1267349],"study_design_scores_gemma":[0.00007347399,0.0003477369,0.2337018,0.00001489099,0.0001228073,0.001114603,0.00008170058,0.7378725,0.02512557,0.0007369479,0.0007848556,0.00002312025],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940203,0.0000640307,0.005113994,0.00002509042,0.000002923614,0.000008430899,0.0003840266,0.0001047163,0.0002764429],"genre_scores_gemma":[0.9964151,0.00002968792,0.002521252,0.00001344128,0.000002316343,0.000007282502,0.0007893503,0.00000864403,0.0002128007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00345236,"threshold_uncertainty_score":0.006864548,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2904265522","doi":"10.1186/s13148-018-0591-z","title":"Machine learning selected smoking-associated DNA methylation signatures that predict HIV prognosis and mortality","year":2018,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; York University; National Institute on Drug Abuse; National Heart, Lung, and Blood Institute; Yale University; Vanderbilt University; National Center for PTSD, U.S. Department of Veterans Affairs; School of Medicine, Emory University; National Cancer Institute; Emory University; National Institute of General Medical Sciences; School of Medicine, Vanderbilt University","keywords":"Epigenome; DNA methylation; CpG site; Medicine; Population; Oncology; Methylation; Biology; Internal medicine; Bioinformatics; Genetics; Gene; Environmental health","authors":[{"name":"Xinyu Zhang","is_ca":false},{"name":"Ying Hu","is_ca":false},{"name":"Bradley E. Aouizerat","is_ca":false},{"name":"Gang Peng","is_ca":false},{"name":"Vincent C. Marconi","is_ca":false},{"name":"Michael J. Corley","is_ca":false},{"name":"Todd Hulgan","is_ca":false},{"name":"Kendall Bryant","is_ca":false},{"name":"Hongyu Zhao","is_ca":false},{"name":"John H. Krystal","is_ca":false},{"name":"Amy C. Justice","is_ca":false},{"name":"Ke Xu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04033477245716474,"gpt":0.3378655007403575,"spread":0.2975307282831928,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002023426,0.0005431874,0.0008361608,0.0008248157,0.0002676527,0.0005318436,0.0005075425,0.0004917411,0.0007459683],"category_scores_gemma":[0.004317247,0.000179464,0.0008232343,0.0005031459,0.0001857595,0.0003451686,0.0004355243,0.0007736101,0.0002273596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004011337,"about_ca_system_score_gemma":0.0005166612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0030925,"about_ca_topic_score_gemma":0.003645459,"domain_scores_codex":[0.9996223,0.0001585411,0.00002551377,0.0001051193,0.00004017464,0.00004832902],"domain_scores_gemma":[0.9984899,0.0009227077,0.0001824208,0.0001303427,0.0002021518,0.0000724729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007846442,0.0004804862,0.6684632,0.00009969355,0.001324575,0.0001682644,0.0001392085,0.1960193,0.008249782,0.0002649241,0.001545406,0.1224605],"study_design_scores_gemma":[0.00004200963,0.0003138202,0.08010528,0.00003435462,0.0002656328,0.0001090442,0.00004869281,0.9150022,0.002230614,0.001429,0.0003954681,0.00002390495],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9758462,0.0005437846,0.0218945,0.0002832383,0.00002920299,0.00004107053,0.0005177025,0.0002026198,0.0006417144],"genre_scores_gemma":[0.9929563,0.0001108275,0.005726342,0.00006089846,0.00002312428,0.00002613887,0.000839596,0.000009184459,0.0002475842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0030925,"threshold_uncertainty_score":0.01070106,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2986189881","doi":"10.1186/s13148-019-0749-3","title":"A genome-wide DNA methylation signature for SETD1B-related syndrome","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia; Western University","funders":"","keywords":"Epigenetics; Genetics; Biology; DNA methylation; Human genetics; Gene; Histone; Histone methyltransferase; Missense mutation; Chromatin; Methyltransferase; Computational biology; Methylation; Gene expression; Mutation","authors":[{"name":"I. Krzyzewska","is_ca":false},{"name":"Saskia M. Maas","is_ca":false},{"name":"Peter Henneman","is_ca":false},{"name":"K. Lip","is_ca":false},{"name":"A. Venema","is_ca":false},{"name":"Kristin Barañano","is_ca":false},{"name":"Anna Chassevent","is_ca":false},{"name":"Erfan Aref‐Eshghi","is_ca":true},{"name":"Anthonie J. van Essen","is_ca":false},{"name":"Tokiko Fukuda","is_ca":false},{"name":"Hiroko Ikeda","is_ca":false},{"name":"M. Jacquemont","is_ca":false},{"name":"H.-G. Kim","is_ca":false},{"name":"Audrey Labalme","is_ca":false},{"name":"M. E. Suzanne Lewis","is_ca":true},{"name":"Gaëtan Lesca","is_ca":false},{"name":"Irene Madrigal","is_ca":false},{"name":"Sonal Mahida","is_ca":false},{"name":"Naomichi Matsumoto","is_ca":false},{"name":"Raquel Rabionet","is_ca":false},{"name":"Evica Rajcan‐Separovic","is_ca":true},{"name":"Ying Qiao","is_ca":true},{"name":"Bekim Sadiković","is_ca":true},{"name":"Hirotomo Saitsu","is_ca":false},{"name":"David A. Sweetser","is_ca":false},{"name":"Mariëlle Alders","is_ca":false},{"name":"Marcel M. A. M. Mannens","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01778535818405212,"gpt":0.2955901367086984,"spread":0.2778047785246463,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001023964,0.0003935004,0.0002157194,0.0008456854,0.000285787,0.0002377214,0.0002466953,0.0004751264,0.002044338],"category_scores_gemma":[0.0005855731,0.0001017089,0.0001825655,0.0003085751,0.0002502915,0.0001015817,0.0003819508,0.0003080119,0.0001735134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001752757,"about_ca_system_score_gemma":0.0001348808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001382453,"about_ca_topic_score_gemma":0.001540178,"domain_scores_codex":[0.9998664,0.00001271136,0.00001391867,0.00004878813,0.00003949246,0.00001873611],"domain_scores_gemma":[0.999831,0.0000478359,0.00003701915,0.00001176361,0.00001753629,0.00005482943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004671896,0.00007556615,0.231925,0.0001055508,0.00008343433,0.05783395,0.0008045606,0.0005491647,0.6845839,0.0005462425,0.0004995525,0.02252584],"study_design_scores_gemma":[0.00003967806,0.0004270992,0.6044567,0.00002641932,0.0001235172,0.2877739,0.0003607362,0.002738642,0.1005348,0.0004113803,0.00307131,0.00003591746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967782,0.0002377274,0.001469495,0.0001071643,0.00001019501,0.00002349922,0.0004139907,0.0000471435,0.0009125337],"genre_scores_gemma":[0.9986079,0.00009373754,0.0007149401,0.0000403479,0.000004421027,0.00000810328,0.0001934776,0.000009352177,0.0003277245],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002044338,"threshold_uncertainty_score":0.006839037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2107949981","doi":"10.1186/s13148-015-0129-6","title":"Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells","year":2015,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; Mitacs; BC Children's Hospital; Michael Smith Health Research BC; Child and Family Research Institute","keywords":"dNaM; Nucleated Red Blood Cell; Cord blood; Biology; DNA methylation; Haematopoiesis; Epigenetics; Immune system; Cell sorting; Immunology; Transcriptome; Blood cell; Molecular biology; Stem cell; Flow cytometry; Cell biology; Genetics; Fetus; Gene expression; Gene","authors":[{"name":"Olivia M. de Goede","is_ca":true},{"name":"Hamid Reza Razzaghian","is_ca":true},{"name":"E. Magda Price","is_ca":true},{"name":"Meaghan J. Jones","is_ca":true},{"name":"Michael S. Kobor","is_ca":true},{"name":"Wendy P. Robinson","is_ca":true},{"name":"Pascal M. Lavoie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1511768639657927,"gpt":0.4526627684138403,"spread":0.3014859044480476,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003413391,0.0002487746,0.0002004983,0.0003231187,0.000163946,0.0002979582,0.0002148044,0.0002216099,0.001706856],"category_scores_gemma":[0.0005427082,0.0001055171,0.0001528125,0.0002946783,0.0002063739,0.0000804786,0.0002959179,0.0003474258,0.0003639346],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003234368,"about_ca_system_score_gemma":0.0002324529,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001692772,"about_ca_topic_score_gemma":0.002799316,"domain_scores_codex":[0.9996419,0.0000539754,0.00002412084,0.0001258528,0.0001124821,0.00004175508],"domain_scores_gemma":[0.9997781,0.0000591967,0.00006028429,0.0000289288,0.0000464822,0.00002697129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001658522,0.00001163733,0.006909643,0.00006802622,0.00001788106,0.00002934017,0.00004338516,0.00009263086,0.9848007,0.00004734317,0.0000595862,0.007754005],"study_design_scores_gemma":[0.000009707232,0.0001957532,0.07587776,0.00002338325,0.00007068082,0.0003888721,0.00005261994,0.001480329,0.9184532,0.0001062599,0.003333731,0.00000762943],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980958,0.002415405,0.01283743,0.0001057638,0.00002403051,0.00005382331,0.001750001,0.0002012075,0.001654192],"genre_scores_gemma":[0.9808338,0.0008388039,0.01438573,0.0001479531,0.00001168442,0.00008131086,0.002326879,0.00006117739,0.001312586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001706856,"threshold_uncertainty_score":0.005710065,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2990076559","doi":"10.1186/s13148-019-0754-6","title":"Body mass index is associated with epigenetic age acceleration in the visceral adipose tissue of subjects with severe obesity","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Fonds de Recherche du Québec - Santé; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Canada Research Chairs; Heart and Stroke Foundation of Canada","keywords":"Body mass index; Adipose tissue; Obesity; Epigenetics; Medicine; Human genetics; Sports medicine; Physiology; Internal medicine; Bioinformatics; Endocrinology; Biology; Pathology; Genetics; Gene","authors":[{"name":"Juan de Toro‐Martín","is_ca":true},{"name":"Frédéric Guénard","is_ca":true},{"name":"André Tchernof","is_ca":true},{"name":"Frédéric‐Simon Hould","is_ca":true},{"name":"Stéfane Lebel","is_ca":true},{"name":"François Julien","is_ca":true},{"name":"Simon Marceau","is_ca":true},{"name":"Marie‐Claude Vohl","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02210726225735483,"gpt":0.3076489336054764,"spread":0.2855416713481216,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003432447,0.0002517322,0.0002150371,0.0005050563,0.0001838952,0.0003250522,0.0001268737,0.0003124916,0.001682292],"category_scores_gemma":[0.001172434,0.0001575746,0.0003176465,0.0004700096,0.0001960688,0.000202221,0.0002749114,0.0004506523,0.000147918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008746912,"about_ca_system_score_gemma":0.0001193712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001039038,"about_ca_topic_score_gemma":0.001236096,"domain_scores_codex":[0.9998854,0.00003057509,0.00001273449,0.00003446142,0.00001835143,0.00001837664],"domain_scores_gemma":[0.9992977,0.0001131178,0.0003716947,0.0000484591,0.00005588897,0.0001130974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002463587,0.00001781007,0.9970493,0.00001102704,0.00005250013,0.00005724136,0.00002885546,0.00002924615,0.0008333725,0.00001752707,0.00003812391,0.001618573],"study_design_scores_gemma":[0.000001865678,0.00006155892,0.9995698,0.000002292893,0.00002070587,0.0001173329,0.00002410206,0.00009093888,0.00004420247,0.00001729949,0.00004873167,0.000001212889],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988582,0.0004771765,0.0001958528,0.00004036256,0.00001054135,0.000004305864,0.0001086868,0.000005420874,0.0002993362],"genre_scores_gemma":[0.9995034,0.000101097,0.000108691,0.00001373066,0.0000127238,0.000003545842,0.0001111264,0.000001670945,0.0001438998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001682292,"threshold_uncertainty_score":0.005627811,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2584723532","doi":"10.1186/s13148-017-0320-z","title":"An empirically driven data reduction method on the human 450K methylation array to remove tissue specific non-variable CpGs","year":2017,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; R. Howard Webster Foundation; Fondation Brain Canada","keywords":"DNA methylation; Epigenetics; Epigenome; Population; Biology; Computational biology; Human genetics; Context (archaeology); Methylation; Genetics; Bioinformatics; Medicine; Gene; Gene expression","authors":[{"name":"Rachel D. Edgar","is_ca":true},{"name":"Meaghan J. Jones","is_ca":true},{"name":"Wendy P. Robinson","is_ca":true},{"name":"Michael S. Kobor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.3588563041744419,"gpt":0.5480611774189741,"spread":0.1892048732445322,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01293471,0.001326249,0.001664602,0.002144013,0.001173299,0.00158192,0.002321766,0.001481119,0.004571138],"category_scores_gemma":[0.03707511,0.0007864614,0.004727586,0.002689666,0.0009488703,0.0006325162,0.001822373,0.002838782,0.002201799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007876205,"about_ca_system_score_gemma":0.003876114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005562712,"about_ca_topic_score_gemma":0.009857919,"domain_scores_codex":[0.9921462,0.004040163,0.000701445,0.001660251,0.001236831,0.0002151493],"domain_scores_gemma":[0.9880655,0.006752812,0.0006003997,0.002617321,0.001804744,0.0001592771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001240055,0.0005715146,0.04685054,0.001497735,0.003983791,0.0006281249,0.001123204,0.06829468,0.05583237,0.0147753,0.02398137,0.7812213],"study_design_scores_gemma":[0.0007232823,0.0007321729,0.05085178,0.0002448504,0.001438933,0.0008031877,0.0004281634,0.8182111,0.04044269,0.03550159,0.05035072,0.0002715284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0188361,0.0004204552,0.9742433,0.0004633331,0.0001355242,0.0006480844,0.001526393,0.003253674,0.0004731689],"genre_scores_gemma":[0.0525623,0.0001117004,0.9407814,0.0002911314,0.00008033203,0.00152487,0.003297655,0.0004309852,0.0009195539],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01293471,"threshold_uncertainty_score":0.06840611,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3014445345","doi":"10.1186/s13148-020-00844-2","title":"Adverse childhood experiences, DNA methylation age acceleration, and cortisol in UK children: a prospective population-based cohort study","year":2020,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital","funders":"Economic and Social Research Council; University of Bristol; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Medical Research Council; Wellcome Trust","keywords":"Human genetics; DNA methylation; Prospective cohort study; Medicine; Cohort; Cohort study; Population; Genetics; Demography; Pediatrics; Bioinformatics; Biology; Internal medicine; Environmental health; Gene","authors":[{"name":"Rosalind Tang","is_ca":true},{"name":"Laura D Howe","is_ca":false},{"name":"Matthew Suderman","is_ca":false},{"name":"Caroline L. Relton","is_ca":false},{"name":"Andrew Crawford","is_ca":false},{"name":"Lotte C. Houtepen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02284494097101197,"gpt":0.3197192255497258,"spread":0.2968742845787138,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001191886,0.0006566544,0.0007783222,0.001134192,0.0009350062,0.001225826,0.0008444589,0.0008170155,0.001841243],"category_scores_gemma":[0.003001987,0.001011566,0.001112658,0.002451029,0.0007115823,0.0006827494,0.001542636,0.001197759,0.0004585775],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000973643,"about_ca_system_score_gemma":0.0007270267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0805961,"about_ca_topic_score_gemma":0.07978987,"domain_scores_codex":[0.9986046,0.0004364121,0.000168504,0.0003668647,0.0002279333,0.0001957023],"domain_scores_gemma":[0.9974357,0.0003344607,0.001083031,0.0004578002,0.0002750931,0.0004138678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006886289,0.00002182779,0.9988809,0.00001340781,0.0001015178,0.0001027364,0.000214605,0.00002534344,0.0001133546,0.0000125923,0.0001075232,0.0003373572],"study_design_scores_gemma":[0.000006636415,0.00004874924,0.9993887,0.00001132911,0.00003059407,0.0001533763,0.0001715545,0.00004373364,0.00001846646,0.000005382981,0.0001178398,0.000003617245],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979346,0.0003193478,0.00009784459,0.00003414853,0.000008825316,0.00002214928,0.001399075,0.000003775169,0.0001803957],"genre_scores_gemma":[0.9978266,0.0004214013,0.0002203441,0.0000420947,0.000009837839,0.00005108379,0.001139674,0.000003973005,0.000284922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0805961,"threshold_uncertainty_score":0.1602539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2295081085","doi":"10.1186/s13148-016-0193-6","title":"Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohn’s disease-associated fibrosis","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Génome Québec; McGill University; National Cancer Institute; National Institutes of Health; Case Western Reserve University; Cleveland Clinic; Eli and Edythe Broad Foundation; Howard Hughes Medical Institute","keywords":"DNA methylation; Biology; Epigenetics; Transcriptome; Genetics; Epigenomics; CpG site; Gene; Cancer research; Gene expression","authors":[{"name":"Tammy Sadler","is_ca":false},{"name":"Jeffrey Bhasin","is_ca":false},{"name":"Yaomin Xu","is_ca":false},{"name":"Jill Barnholz-Sloan","is_ca":false},{"name":"Yanwen Chen","is_ca":false},{"name":"Angela H. Ting","is_ca":false},{"name":"Eleni Stylianou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01638572447660843,"gpt":0.2862379551458263,"spread":0.2698522306692179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002269812,0.0001569355,0.0002432461,0.0006318688,0.0001275901,0.0002312201,0.0001135905,0.0002336314,0.0007911454],"category_scores_gemma":[0.0003758006,0.0000903318,0.00017734,0.0004456976,0.0001506113,0.0001034186,0.0002128514,0.0002323197,0.0001066073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001225987,"about_ca_system_score_gemma":0.00009747911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005745334,"about_ca_topic_score_gemma":0.001304984,"domain_scores_codex":[0.9998404,0.00002388957,0.00001194098,0.00007059243,0.00002968561,0.00002352445],"domain_scores_gemma":[0.9997594,0.00006376152,0.0000995645,0.00001676166,0.00002844722,0.00003204663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008003031,0.0000399065,0.5088077,0.0001579905,0.0002576478,0.0001526961,0.00013727,0.0006221216,0.471779,0.0001253916,0.0002219339,0.0168981],"study_design_scores_gemma":[0.000008829941,0.0001158285,0.9844,0.00001005677,0.00009442868,0.0005468536,0.00007384876,0.001315063,0.01256627,0.0001914613,0.0006712815,0.000006085856],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959293,0.0008175973,0.001814697,0.00004134049,0.000002765583,0.000009597135,0.0009783204,0.00001714469,0.0003892881],"genre_scores_gemma":[0.9976493,0.0002192124,0.001149988,0.00003086114,0.000004117499,0.00001232027,0.000793192,0.000005179253,0.0001358232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007911454,"threshold_uncertainty_score":0.002646625,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3159791029","doi":"10.1186/s13148-021-01081-x","title":"Assessment of differentially methylated loci in individuals with end-stage kidney disease attributed to diabetic kidney disease: an exploratory study","year":2021,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Chronic Kidney Disease and Diabetes","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Centre for Public Health, Queen's University Belfast; Perelman School of Medicine, University of Pennsylvania; University of California, San Diego; Medical Research Council; Samfundet Folkhälsan; Institute of Genetics; National Institutes of Health; Queen's University; Monash University; University College Dublin; Public Health Agency; Science Foundation Ireland; Department for the Economy; Economic and Social Research Council; Broad Institute; University of Pennsylvania; Wellcome Trust; Queen's University Belfast; Helsingin Yliopisto; Massachusetts General Hospital","keywords":"Disease; Kidney disease; Human genetics; End-stage kidney disease; End stage renal disease; Kidney; Medicine; Diabetes mellitus; Stage (stratigraphy); Biology; Bioinformatics; Internal medicine; Genetics; Endocrinology; Gene","authors":[{"name":"Laura J. Smyth","is_ca":false},{"name":"Jill Kilner","is_ca":false},{"name":"Viji Nair","is_ca":false},{"name":"H. Liu","is_ca":false},{"name":"Eoin Brennan","is_ca":false},{"name":"Katie Kerr","is_ca":false},{"name":"Niina Sandholm","is_ca":false},{"name":"Joanne B. Cole","is_ca":false},{"name":"Emma H. Dahlström","is_ca":false},{"name":"Anna Syreeni","is_ca":false},{"name":"Rany M. Salem","is_ca":false},{"name":"Robert G. Nelson","is_ca":false},{"name":"Helen C. Looker","is_ca":false},{"name":"Christopher Wooster","is_ca":false},{"name":"Kerry Anderson","is_ca":false},{"name":"Gareth J. McKay","is_ca":false},{"name":"Frank Kee","is_ca":false},{"name":"Ian Young","is_ca":false},{"name":"Darrell Andrews","is_ca":false},{"name":"Carol Forsblom","is_ca":false},{"name":"Joel N. Hirschhorn","is_ca":false},{"name":"Catherine Godson","is_ca":false},{"name":"Per‐Henrik Groop","is_ca":false},{"name":"Alexander P. Maxwell","is_ca":false},{"name":"Katalin Suszták","is_ca":false},{"name":"Matthias Kretzler","is_ca":false},{"name":"José C. Florez","is_ca":false},{"name":"Amy Jayne McKnight","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0535737403221971,"gpt":0.3831278072536649,"spread":0.3295540669314678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007044637,0.0003424988,0.0003163099,0.0005347301,0.000567397,0.0003322107,0.0002876099,0.0003895627,0.001462126],"category_scores_gemma":[0.001110333,0.0001478751,0.0003675181,0.0005681977,0.0002722395,0.0001647551,0.0006203871,0.0002781153,0.0002663031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001718096,"about_ca_system_score_gemma":0.0002259801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001336148,"about_ca_topic_score_gemma":0.001364951,"domain_scores_codex":[0.9996171,0.0001192752,0.00002428722,0.0001473509,0.00004090168,0.00005102487],"domain_scores_gemma":[0.9994758,0.000132761,0.0001418026,0.00006511842,0.00007989805,0.000104677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001877058,0.0002836343,0.977012,0.00005904147,0.000158245,0.0006631463,0.0008469383,0.00008165513,0.01290143,0.00006805431,0.0001369873,0.00591163],"study_design_scores_gemma":[0.00005009495,0.002032705,0.9920402,0.000009390721,0.0001639797,0.001681565,0.0006558739,0.0002867876,0.002159107,0.00009195507,0.000817835,0.00001044395],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999299,0.00006766935,0.0002759405,0.000007440446,8.783402e-7,0.00002047254,0.0001806896,0.000002778863,0.0001451162],"genre_scores_gemma":[0.9990346,0.00002549255,0.0004575676,0.0000162688,0.000002539717,0.00002374037,0.0002294275,0.00000195467,0.0002083714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001462126,"threshold_uncertainty_score":0.004891336,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2516517589","doi":"10.1186/s13148-016-0253-y","title":"Next-generation sequencing reveals broad down-regulation of microRNAs in secondary progressive multiple sclerosis CD4+ T cells","year":2016,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Cytokine Signaling Pathways and Interactions","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Diamantina Institute, University of Queensland; Trish Multiple Sclerosis Research Foundation; Canadian Institutes of Health Research; University of Queensland; Multiple Sclerosis Australia","keywords":"Human genetics; microRNA; Multiple sclerosis; Biology; Computational biology; Genetics; Medicine; Bioinformatics; Gene; Immunology","authors":[{"name":"Katherine Sanders","is_ca":false},{"name":"Miles C. Benton","is_ca":false},{"name":"Rod A. Lea","is_ca":false},{"name":"Vicki E. Maltby","is_ca":false},{"name":"Susan Agland","is_ca":false},{"name":"Nathan Griffin","is_ca":false},{"name":"Rodney J. Scott","is_ca":false},{"name":"Lotti Tajouri","is_ca":false},{"name":"Jeannette Lechner‐Scott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2068559815960139,"gpt":0.349268747507373,"spread":0.1424127659113591,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002686506,0.0002173506,0.0002781269,0.0003180117,0.0001829762,0.0003768286,0.0001161999,0.0002976742,0.001474437],"category_scores_gemma":[0.0004406033,0.0001340075,0.0003015838,0.0002171314,0.0001601819,0.0001014304,0.000186559,0.0003188186,0.0004589186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001858162,"about_ca_system_score_gemma":0.0001513135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003681784,"about_ca_topic_score_gemma":0.000809582,"domain_scores_codex":[0.9997452,0.00002744981,0.00002244021,0.00009756475,0.00007237299,0.00003504204],"domain_scores_gemma":[0.9998266,0.00004394986,0.00004517905,0.00001756685,0.00004630857,0.00002037834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003759089,0.00002235621,0.01154635,0.00009034815,0.0000461502,0.00008160765,0.0000757541,0.0001518065,0.9789801,0.00004000963,0.0002265926,0.008363176],"study_design_scores_gemma":[0.00006141865,0.0009854604,0.3690436,0.00004205038,0.0002348993,0.001558459,0.0002396978,0.003818211,0.616934,0.0003336656,0.006724722,0.00002390563],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922957,0.001086028,0.003983697,0.0000676092,0.00002736634,0.00002671711,0.001350856,0.0001043688,0.001057634],"genre_scores_gemma":[0.9884136,0.0004489285,0.007200581,0.0001946176,0.0000213903,0.0001046432,0.00199592,0.00004528926,0.00157505],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001474437,"threshold_uncertainty_score":0.004932523,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2998743225","doi":"10.1186/s13148-019-0804-0","title":"Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature","year":2020,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"London Health Sciences Centre; Western University","funders":"Fondazione Bambino Gesù; Istituto Superiore di Sanità; Illumina; Ministero della Salute; London Health Sciences Centre","keywords":"Frameshift mutation; DNA methylation; Epigenetics; Genetics; Human genetics; Biology; Proband; Gene; Computational biology; Bioinformatics; Methylation; Medicine; Exon; Mutation; Gene expression","authors":[{"name":"Andrea Ciolfi","is_ca":false},{"name":"Erfan Aref‐Eshghi","is_ca":true},{"name":"Simone Pizzi","is_ca":false},{"name":"Lucia Pedace","is_ca":false},{"name":"Evelina Miele","is_ca":false},{"name":"Jennifer Kerkhof","is_ca":true},{"name":"Elisabetta Flex","is_ca":false},{"name":"Simone Martinelli","is_ca":false},{"name":"Francesca Clementina Radio","is_ca":false},{"name":"Claudia Ruivenkamp","is_ca":false},{"name":"Gijs W.E. Santen","is_ca":false},{"name":"Emilia Bijlsma","is_ca":false},{"name":"Daniela Q.C.M. Barge‐Schaapveld","is_ca":false},{"name":"Katrin Õunap","is_ca":false},{"name":"Victoria Mok Siu","is_ca":true},{"name":"R. Frank Kooy","is_ca":false},{"name":"Bruno Dallapiccola","is_ca":false},{"name":"Bekim Sadiković","is_ca":true},{"name":"Marco Tartaglia","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03336429675200332,"gpt":0.3041740722003124,"spread":0.2708097754483091,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002080618,0.0003116163,0.0002071696,0.0003459177,0.0001158998,0.0001740773,0.000169557,0.0002866723,0.001452823],"category_scores_gemma":[0.0007325553,0.00008141228,0.0002335632,0.0002076266,0.0001735918,0.00007136693,0.000142813,0.0001657863,0.0002858489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001888142,"about_ca_system_score_gemma":0.0001476006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001391163,"about_ca_topic_score_gemma":0.002101423,"domain_scores_codex":[0.9999193,0.00001095741,0.00000673914,0.00003543072,0.00001888968,0.000008738837],"domain_scores_gemma":[0.9998087,0.00009462071,0.00005005557,0.00001864424,0.00001371708,0.00001420762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008643103,0.000124625,0.3449856,0.0001601858,0.0003011213,0.00315521,0.0001400567,0.01225761,0.5825298,0.001064129,0.0007046613,0.05371284],"study_design_scores_gemma":[0.00009377562,0.0003989668,0.5698916,0.00002988002,0.0002510145,0.01306163,0.00009860958,0.1109808,0.3001182,0.002696404,0.002327962,0.00005108328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874559,0.0001314295,0.01100743,0.00003945961,0.000005411603,0.00002380233,0.0006528831,0.0002587352,0.0004249703],"genre_scores_gemma":[0.9956074,0.00003883765,0.003629665,0.00001841239,0.00000293722,0.000008010323,0.0004772598,0.00001110036,0.0002064491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001452823,"threshold_uncertainty_score":0.004860222,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4396976798","doi":"10.1186/s13148-024-01670-6","title":"DNA methylation and type 2 diabetes: a systematic review","year":2024,"lang":"en","type":"review","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"The Wellcome Trust DBT India Alliance; Department of Biotechnology, Ministry of Science and Technology, India; Wellcome Trust","keywords":"DNA methylation; TXNIP; Type 2 diabetes; Biology; Bioinformatics; Methylation; Diabetes mellitus; Medicine; Internal medicine; Endocrinology; Genetics; Gene; Gene expression","authors":[{"name":"Nikhil Nadiger","is_ca":false},{"name":"Jyothisha Kana Veed","is_ca":false},{"name":"Priyanka Chinya Nataraj","is_ca":false},{"name":"Arpita Mukhopadhyay","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0843513859580974,"gpt":0.4344293004287861,"spread":0.3500779144706888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004610633,0.001340537,0.007196407,0.006148109,0.0005328673,0.001589727,0.001449044,0.0017517,0.004674992],"category_scores_gemma":[0.02147987,0.0007612464,0.00652088,0.009229261,0.0006197858,0.001281027,0.001064583,0.00100991,0.000243561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002523965,"about_ca_system_score_gemma":0.007472371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00829105,"about_ca_topic_score_gemma":0.01626089,"domain_scores_codex":[0.9960153,0.001470323,0.001224141,0.0004338263,0.0006962187,0.0001601911],"domain_scores_gemma":[0.9850906,0.01068121,0.002774765,0.0001978791,0.001082711,0.0001727523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0002012072,0.00001307979,0.001690186,0.9537364,0.0142502,0.0001061628,0.0001262267,0.0001115224,0.0001476035,0.0001522118,0.001709703,0.02775554],"study_design_scores_gemma":[0.0003359498,0.000235452,0.01209252,0.8350528,0.1333719,0.0006469658,0.0002364274,0.0001595262,0.0001995867,0.0004070748,0.01721159,0.00005011781],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008465601,0.9981945,0.0000873524,0.0002526336,0.00006974077,0.00009808929,0.0003313227,0.000004558594,0.0001153477],"genre_scores_gemma":[0.01543913,0.9829257,0.0004013904,0.000472045,0.00009087193,0.0003443751,0.0002470431,0.000002979246,0.00007650244],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00829105,"threshold_uncertainty_score":0.0243836,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3003176324","doi":"10.1186/s13148-019-0800-4","title":"Elevated HDAC activity and altered histone phospho-acetylation confer acquired radio-resistant phenotype to breast cancer cells","year":2020,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Advanced Centre for Treatment, Research and Education in Cancer; Bhabha Atomic Research Centre; University Grants Commission; Department of Science and Technology, Ministry of Science and Technology, India","keywords":"Acetylation; Phenotype; Breast cancer; Epigenetics; Histone; Human genetics; Cancer research; Medicine; Biology; Cancer; Internal medicine; Genetics; Gene","authors":[{"name":"Asmita Sharda","is_ca":false},{"name":"Mudasir Rashid","is_ca":false},{"name":"Sanket Shah","is_ca":false},{"name":"Ajit Kumar Sharma","is_ca":true},{"name":"Saurav Singh","is_ca":false},{"name":"Poonam Gera","is_ca":false},{"name":"Murali Krishna Chilkapati","is_ca":false},{"name":"Sanjay Gupta","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04157297784044701,"gpt":0.3652544735638351,"spread":0.3236814957233881,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000872116,0.0001957051,0.0002647318,0.0002042705,0.0001036434,0.0001755639,0.00009982907,0.0001572439,0.002151892],"category_scores_gemma":[0.0000817903,0.0001269655,0.0002059004,0.000159584,0.0001173538,0.00005054937,0.0001140048,0.0002767546,0.0003946646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000139127,"about_ca_system_score_gemma":0.00009007779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006475488,"about_ca_topic_score_gemma":0.0006746938,"domain_scores_codex":[0.9999063,0.00001391694,0.00001160411,0.0000204843,0.000023776,0.00002395686],"domain_scores_gemma":[0.9999375,0.00001094293,0.00001585862,0.00001194852,0.00001016108,0.00001358238],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008421926,0.00001567367,0.001181768,0.00001791303,0.000008610615,0.00006683943,0.00001389149,0.00002210226,0.9979431,0.00001555358,0.00003028319,0.0006000643],"study_design_scores_gemma":[0.00001096766,0.0006310674,0.0501167,0.000004068485,0.00004177895,0.001252647,0.00007144042,0.0004606766,0.9455732,0.00002993525,0.001802464,0.000005148971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972596,0.000770672,0.0008433678,0.0000334893,0.00001401372,0.00001642049,0.0003873582,0.00003733864,0.0006376957],"genre_scores_gemma":[0.9974253,0.000334796,0.0005080151,0.00002514851,0.000005171897,0.00002131541,0.000590628,0.000007484556,0.001082295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002151892,"threshold_uncertainty_score":0.00719887,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2907917440","doi":"10.1186/s13148-018-0606-9","title":"Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Centre for Addiction and Mental Health","funders":"European Research Council; Sigrid Juséliuksen Säätiö; Canadian Institutes of Health Research; Helsingin Yliopiston Tiedesäätiö; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Academy of Finland","keywords":"Cotinine; DNA methylation; Epigenetics; CpG site; Methylation; Epigenome; Single-nucleotide polymorphism; Nicotine; Biology; Genetics; Genome-wide association study; Biomarker; Genotype; Medicine; Internal medicine; Gene","authors":[{"name":"Richa Gupta","is_ca":false},{"name":"Jenny van Dongen","is_ca":false},{"name":"Yu Fu","is_ca":false},{"name":"Abdel Abdellaoui","is_ca":false},{"name":"Rachel F. Tyndale","is_ca":true},{"name":"Vidya Velagapudi","is_ca":false},{"name":"Dorret I. Boomsma","is_ca":false},{"name":"Tellervo Korhonen","is_ca":false},{"name":"Jaakko Kaprio","is_ca":false},{"name":"Anu Loukola","is_ca":false},{"name":"Miina Ollikainen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03549484570916981,"gpt":0.3511567114975077,"spread":0.3156618657883378,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006230462,0.0002725621,0.0002906465,0.0004534179,0.0002394367,0.0003416293,0.000321973,0.0004147245,0.001323398],"category_scores_gemma":[0.001500088,0.0001409874,0.0005266095,0.0006762227,0.000241349,0.00009829549,0.0002512129,0.0004321657,0.0001161046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001561866,"about_ca_system_score_gemma":0.0002545694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004190912,"about_ca_topic_score_gemma":0.006553912,"domain_scores_codex":[0.9995964,0.00009511907,0.00003141035,0.0001679541,0.00006674144,0.00004228869],"domain_scores_gemma":[0.9990782,0.000323876,0.0002768072,0.0001265482,0.00008248563,0.000112035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007569224,0.00005547605,0.9410922,0.00004647574,0.0007433877,0.0002826419,0.000156442,0.0001879408,0.0514042,0.0001317625,0.0001020304,0.005040535],"study_design_scores_gemma":[0.00001000995,0.00006885966,0.9975063,0.00000352195,0.000172812,0.0002381137,0.00001869276,0.0004280043,0.001315351,0.00007083726,0.0001642885,0.000003200075],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974788,0.0004581801,0.001394802,0.00005090916,0.000008200735,0.000008889607,0.0003359061,0.00002142213,0.0002428891],"genre_scores_gemma":[0.9991079,0.00006993832,0.0005413285,0.00001845032,0.000005077087,0.000006316199,0.0001278899,0.000005130011,0.0001178951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004190912,"threshold_uncertainty_score":0.008333027,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3193863613","doi":"10.1186/s13148-021-01150-1","title":"Epigenetic age is associated with baseline and 3-year change in frailty in the Canadian Longitudinal Study on Aging","year":2021,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McMaster University; NOSM University; University of British Columbia; Impact; BC Children's Hospital; Health Sciences North","funders":"Institute of Aging; Canadian Institutes of Health Research; Government of Canada","keywords":"Epigenetics; Frailty Index; Gerontology; Demography; Healthy aging; Medicine; Longitudinal study; Biological age; Biology; Genetics","authors":[{"name":"Chris P. Verschoor","is_ca":true},{"name":"David Lin","is_ca":true},{"name":"Michael S. Kobor","is_ca":true},{"name":"Oxana Mian","is_ca":true},{"name":"Jinhui Ma","is_ca":true},{"name":"Guillaume Paré","is_ca":true},{"name":"Gustavo Ybazeta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1744129746775886,"gpt":0.4069250684051434,"spread":0.2325120937275547,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001696313,0.0004359481,0.0004101491,0.0009052322,0.001749397,0.0008165549,0.001399177,0.0006096901,0.002192846],"category_scores_gemma":[0.005013697,0.0002031182,0.0009137883,0.001996871,0.0004490027,0.0003494221,0.001003969,0.0009069835,0.0001952483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007384382,"about_ca_system_score_gemma":0.008663364,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9639754,"about_ca_topic_score_gemma":0.9771619,"domain_scores_codex":[0.9988959,0.0001208553,0.00006878043,0.0002603998,0.0003709115,0.0002830516],"domain_scores_gemma":[0.9973635,0.0001458244,0.0004848742,0.0002509026,0.00126789,0.0004869609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001333674,0.00001950538,0.9952922,0.00001819237,0.0001336261,0.00001287478,0.0002607947,0.00007923326,0.0001248784,0.00007020099,0.0007403987,0.003114755],"study_design_scores_gemma":[0.000003895771,0.000009293723,0.9993144,0.000007811961,0.00002892636,0.000008645725,0.0001432688,0.0001668335,0.00002594137,0.00002075559,0.000264438,0.000005782327],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926058,0.000758893,0.0002486609,0.00038205,0.00003206941,0.00002512406,0.00446575,0.00001491732,0.001466664],"genre_scores_gemma":[0.9969394,0.000228184,0.0002219804,0.00006535182,0.000007010594,0.00001517369,0.001901796,0.000005596054,0.0006155049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03602463,"threshold_uncertainty_score":0.07247353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}