{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":118,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":118,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"1a2cd75e558d","filters":{"venue":"Cold Spring Harbor Protocols"}},"results":[{"id":"W2109350221","doi":"10.1101/pdb.prot5156","title":"The OP9-DL1 System: Generation of T-Lymphocytes from Embryonic or Hematopoietic Stem Cells In Vitro","year":2009,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Stem cell; Cell biology; Haematopoiesis; Embryonic stem cell; Stromal cell; Biology; Adult stem cell; Bone marrow; Cellular differentiation; In vitro; Stem cell factor; Immunology; Cancer research; Genetics","authors":[{"name":"Roxanne Holmes","is_ca":true},{"name":"Juan Carlos Zúñiga‐Pflücker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02701278965301342,"gpt":0.2795117429043846,"spread":0.2524989532513712,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000335389,0.0006448652,0.0003570661,0.0008171565,0.0004150484,0.000700358,0.000912805,0.0004485999,0.004546103],"category_scores_gemma":[0.0001574998,0.0003451918,0.0002760252,0.0004350305,0.0002758024,0.0004243657,0.0007620103,0.001108369,0.004126529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004300202,"about_ca_system_score_gemma":0.0003430015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006024994,"about_ca_topic_score_gemma":0.001301504,"domain_scores_codex":[0.9996828,0.00003880556,0.00004820155,0.00007045958,0.0001090131,0.00005079933],"domain_scores_gemma":[0.9998591,0.00001965106,0.00003171936,0.00003023601,0.00001775247,0.00004151905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008261722,0.00002382046,0.0001415905,0.000127511,0.000006796195,0.00011059,0.00002818807,0.0001044985,0.992845,0.0006363345,0.0005051262,0.005388011],"study_design_scores_gemma":[0.00001982145,0.00006436493,0.0006749454,0.00001447491,0.00001954635,0.0004819651,0.00001153731,0.0004233494,0.9718918,0.00009769954,0.02629065,0.000009930836],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.6454441,0.01341163,0.2744768,0.000777645,0.0006643122,0.001610615,0.02065186,0.004881043,0.03808197],"genre_scores_gemma":[0.7792799,0.01024176,0.1295735,0.000424435,0.000165721,0.001286067,0.02684182,0.001004278,0.05118254],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.004546103,"threshold_uncertainty_score":0.01520824,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165722259","doi":"10.1101/pdb.top066050","title":"Ca<sup>2+</sup>-Sensitive Fluorescent Dyes and Intracellular Ca<sup>2+</sup> Imaging","year":2013,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":129,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; National Institutes of Health; National Heart, Lung, and Blood Institute; Ministero dello Sviluppo Economico; Ontario Ministry of Economic Development and Innovation","keywords":"Fluorescence; Biophysics; Intracellular; Brightness; Chemistry; Physics; Biology; Biochemistry; Optics","authors":[{"name":"Martin D. Bootman","is_ca":false},{"name":"Katja Rietdorf","is_ca":false},{"name":"Tony Collins","is_ca":true},{"name":"Simon Walker","is_ca":false},{"name":"Michael J. Sanderson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03037376031320008,"gpt":0.3079719560536011,"spread":0.277598195740401,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001710664,0.0006834121,0.0007531127,0.0008173095,0.0009203044,0.002005007,0.001674555,0.002520484,0.003349438],"category_scores_gemma":[0.001551305,0.0006258511,0.0004456141,0.0008748998,0.003117989,0.002898765,0.001559718,0.00384506,0.001275778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001332417,"about_ca_system_score_gemma":0.0007900828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009344674,"about_ca_topic_score_gemma":0.002693174,"domain_scores_codex":[0.9991103,0.0001709586,0.0000584538,0.0001498591,0.000415797,0.000094585],"domain_scores_gemma":[0.9992797,0.0003788792,0.00008356933,0.00009137534,0.0000966752,0.00006970615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001909363,0.00006780854,0.0005055852,0.001442469,0.00003020074,0.001189775,0.0005508449,0.001511385,0.6626974,0.1896496,0.01105987,0.1311043],"study_design_scores_gemma":[0.00002674139,0.0002054347,0.001460773,0.0003526488,0.00003144599,0.003826016,0.0002990984,0.004479748,0.6020454,0.0729013,0.3142495,0.0001217876],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.04958578,0.1909708,0.6372605,0.03633448,0.004068521,0.0003194878,0.0005589409,0.001585394,0.07931603],"genre_scores_gemma":[0.2602926,0.2281115,0.4478306,0.007363041,0.002146626,0.001001959,0.0007266349,0.0005465921,0.05198035],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.003349438,"threshold_uncertainty_score":0.01120502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152446105","doi":"10.1101/pdb.prot083733","title":"Rapid Isolation of Nuclei from Cells In Vitro","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Lysis; In vitro; Cytoplasm; Immunoprecipitation; Blot; Chemistry; Membrane; Cell disruption; Gel electrophoresis; Cell biology; Biophysics; Chromatography; Molecular biology; Biochemistry; Biology; Gene","authors":[{"name":"Arash Nabbi","is_ca":true},{"name":"Karl Riabowol","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01747676651041196,"gpt":0.2447745036869515,"spread":0.2272977371765396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009571229,0.001596855,0.001167307,0.001004953,0.001272712,0.001020353,0.001688335,0.0005874106,0.007323694],"category_scores_gemma":[0.0005946531,0.0008166275,0.0006748993,0.0007599841,0.0006462751,0.0008027159,0.001489006,0.002738906,0.01283328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000714495,"about_ca_system_score_gemma":0.0009198302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001596939,"about_ca_topic_score_gemma":0.008030744,"domain_scores_codex":[0.9990162,0.0001492444,0.0001181294,0.0002705714,0.0003449999,0.0001007997],"domain_scores_gemma":[0.9995838,0.00007170437,0.00003626188,0.0001321619,0.0001195941,0.00005647674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007091242,0.00002807765,0.00008073792,0.0002634674,0.00001357961,0.00008681149,0.0000654196,0.0001316988,0.9893973,0.001036261,0.001888777,0.006936973],"study_design_scores_gemma":[0.0000562723,0.000233099,0.001596069,0.0001244356,0.00005224806,0.0006399567,0.00004784694,0.001508139,0.8493083,0.0007247446,0.145657,0.00005200244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08126885,0.01973667,0.8054561,0.001291018,0.002050741,0.00475809,0.02430625,0.007391495,0.05374083],"genre_scores_gemma":[0.1368789,0.01714217,0.7075734,0.0009007868,0.0004337746,0.004577735,0.07242422,0.002374911,0.05769432],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007323694,"threshold_uncertainty_score":0.02450013,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977109589","doi":"10.1101/pdb.prot080325","title":"LysoTracker Staining to Aid in Monitoring Autophagy in <i>Drosophila</i>","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Autophagy; Cell biology; Staining; Biology; Flow cytometry; Cell; Molecular biology; Genetics; Apoptosis","authors":[{"name":"Lindsay DeVorkin","is_ca":true},{"name":"Sharon M. Gorski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02410930233292441,"gpt":0.3215034700865806,"spread":0.2973941677536562,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005125627,0.0007513812,0.0004828971,0.00114709,0.001071623,0.0006544623,0.0008029137,0.0008903604,0.01126416],"category_scores_gemma":[0.0002600121,0.0005150943,0.000561638,0.0007853545,0.00046021,0.0005691615,0.0005655748,0.002074281,0.004849525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007607558,"about_ca_system_score_gemma":0.000540878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001855582,"about_ca_topic_score_gemma":0.007676575,"domain_scores_codex":[0.999521,0.00004860334,0.0000624428,0.0001490049,0.0001443737,0.00007448379],"domain_scores_gemma":[0.9996891,0.00005906523,0.0000539797,0.00006084412,0.00009174841,0.00004530883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003177815,0.00001274716,0.0001235971,0.00008121824,0.000005257672,0.00007230358,0.00003545159,0.00005590076,0.996388,0.0004986302,0.0008246673,0.001870442],"study_design_scores_gemma":[0.00001412688,0.00006922324,0.003180192,0.00004034234,0.00002044138,0.0004962048,0.00004863357,0.0009812313,0.9596639,0.0002439122,0.03522612,0.00001579199],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3327941,0.01063928,0.535491,0.002116604,0.001318481,0.001885085,0.02746026,0.01169793,0.07659724],"genre_scores_gemma":[0.3327447,0.01257223,0.5381459,0.001640936,0.0001877377,0.002598045,0.0244045,0.003974981,0.08373103],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01126416,"threshold_uncertainty_score":0.03768241,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2297537563","doi":"10.1101/pdb.top080754","title":"BioGRID: A Resource for Studying Biological Interactions in Yeast","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Center for Research Resources; Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Schizosaccharomyces pombe; Budding yeast; Yeast; Biology; Model organism; Saccharomyces cerevisiae; Computational biology; Schizosaccharomyces; Bioinformatics; Biotechnology; Genetics; Gene","authors":[{"name":"Rose Oughtred","is_ca":false},{"name":"Andrew Chatr‐aryamontri","is_ca":true},{"name":"Bobby‐Joe Breitkreutz","is_ca":true},{"name":"Christie Chang","is_ca":false},{"name":"Jennifer Rust","is_ca":false},{"name":"Chandra L. Theesfeld","is_ca":false},{"name":"Sven Heinicke","is_ca":false},{"name":"Ashton Breitkreutz","is_ca":true},{"name":"Daici Chen","is_ca":true},{"name":"Jodi Hirschman","is_ca":false},{"name":"Nadine K. Kolas","is_ca":true},{"name":"Michael Livstone","is_ca":false},{"name":"Julie Nixon","is_ca":false},{"name":"Lara O’Donnell","is_ca":true},{"name":"Lindsay Ramage","is_ca":false},{"name":"Andrew Winter","is_ca":false},{"name":"Teresa Reguly","is_ca":true},{"name":"Adnane Sellam","is_ca":true},{"name":"Chris Stark","is_ca":true},{"name":"Lorrie Boucher","is_ca":true},{"name":"Kara Dolinski","is_ca":false},{"name":"Mike Tyers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04030808286606052,"gpt":0.301101602197882,"spread":0.2607935193318215,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001247827,0.003544387,0.004068895,0.005712823,0.002310787,0.00396452,0.004994413,0.001460737,0.02436098],"category_scores_gemma":[0.002912364,0.001926589,0.003164334,0.01037345,0.0005286686,0.003003375,0.004426261,0.002785052,0.02369192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001617136,"about_ca_system_score_gemma":0.003483987,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01499294,"about_ca_topic_score_gemma":0.01344187,"domain_scores_codex":[0.9991906,0.0001763038,0.000117695,0.0001908237,0.0002415171,0.00008302783],"domain_scores_gemma":[0.9990461,0.0002278371,0.000093394,0.000298797,0.0001446237,0.0001892539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001259366,0.0001742121,0.00412775,0.007361788,0.001092308,0.001136886,0.0008162048,0.01835951,0.01797404,0.02444035,0.8805082,0.04274938],"study_design_scores_gemma":[0.0008857878,0.00008620336,0.006741952,0.0008479261,0.0004526375,0.000845227,0.0003515218,0.02608075,0.007015176,0.04424838,0.9121431,0.0003012391],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.007350382,0.005664564,0.05339647,0.0007283155,0.0003742736,0.0002890358,0.8118999,0.1058679,0.01442915],"genre_scores_gemma":[0.01743715,0.004915616,0.05024562,0.0002154645,0.00007805982,0.0006482886,0.9126355,0.01151075,0.002313634],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.02436098,"threshold_uncertainty_score":0.08149558,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2561934665","doi":"10.1101/pdb.prot088740","title":"Analysis of the Budding Yeast Cell Cycle by Flow Cytometry","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Budding yeast; Flow cytometry; Yeast; Budding; Cell cycle; Cell biology; Flow (mathematics); Cell; Chemistry; Biology; Saccharomyces cerevisiae; Molecular biology; Biochemistry; Mechanics; Physics","authors":[{"name":"Adam P. Rosebrock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01490996684158608,"gpt":0.3009252736927988,"spread":0.2860153068512127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001216995,0.0008200376,0.00102284,0.002275624,0.0008796565,0.001358041,0.001155683,0.0006946381,0.006677105],"category_scores_gemma":[0.001042834,0.0003119085,0.0005840047,0.001689692,0.0004645127,0.0006350654,0.0007337554,0.00215625,0.003968643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008410035,"about_ca_system_score_gemma":0.0006462815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001423889,"about_ca_topic_score_gemma":0.001532056,"domain_scores_codex":[0.9989535,0.0001209121,0.0000971833,0.0002981647,0.0004310532,0.00009921042],"domain_scores_gemma":[0.9994853,0.0001536509,0.00004508978,0.00008410233,0.0001864688,0.00004547255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002068871,0.0001022937,0.0009238655,0.0002293587,0.0000264265,0.00006721293,0.000109989,0.0009628327,0.960677,0.004126752,0.002821653,0.02974577],"study_design_scores_gemma":[0.00006823811,0.0002402075,0.004226883,0.00005745842,0.0000365423,0.0001954437,0.00006360055,0.02345799,0.9202344,0.004334043,0.04701915,0.00006610586],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.134086,0.00349679,0.8093991,0.0006998945,0.0005331946,0.001921074,0.02314234,0.01076197,0.01595965],"genre_scores_gemma":[0.2500834,0.006460838,0.6993262,0.0006316326,0.0001740218,0.004721295,0.02324031,0.001737433,0.01362493],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.006677105,"threshold_uncertainty_score":0.02233708,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016363647","doi":"10.1101/pdb.prot080333","title":"Monitoring Autophagic Flux Using Ref(2)P, the <i>Drosophila</i> p62 Ortholog","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Autophagy; Ubiquitin; Drosophila (subgenus); Cell biology; Flux (metallurgy); Proteasome; Scaffold protein; Chemistry; Protein degradation; Biology; Biochemistry; Gene; Signal transduction","authors":[{"name":"Lindsay DeVorkin","is_ca":true},{"name":"Sharon M. Gorski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03896750921672727,"gpt":0.3264212368751699,"spread":0.2874537276584427,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003144254,0.0004961525,0.0002532553,0.0007438056,0.0005449548,0.0003021415,0.0004236759,0.000705989,0.001432148],"category_scores_gemma":[0.0001869427,0.0002801795,0.0004073684,0.0003179614,0.000341624,0.0004556194,0.0004872834,0.001007389,0.0004320788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004591521,"about_ca_system_score_gemma":0.0003489289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009323001,"about_ca_topic_score_gemma":0.002074903,"domain_scores_codex":[0.9997053,0.00004540732,0.0000311526,0.00008697309,0.00008602558,0.00004517714],"domain_scores_gemma":[0.9997769,0.00005402312,0.00005677422,0.00003570209,0.00003363049,0.00004301799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003808508,0.00002002832,0.0001776587,0.00002146515,0.000002861463,0.00002526011,0.00001171124,0.00002710927,0.9986846,0.0001144616,0.0000798543,0.000796937],"study_design_scores_gemma":[0.00001639805,0.0001315928,0.003736696,0.000004628291,0.000008324244,0.0002641417,0.00001670059,0.0004623306,0.9936066,0.00009720244,0.001641901,0.00001358742],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8369009,0.003963402,0.1396217,0.0007815476,0.0002471463,0.0006506396,0.003507821,0.001799474,0.01252737],"genre_scores_gemma":[0.7848888,0.003400622,0.1911758,0.000613035,0.00006870762,0.001213718,0.003623287,0.0002898658,0.01472627],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001432148,"threshold_uncertainty_score":0.004791021,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2327149980","doi":"10.1101/pdb.prot088807","title":"Synthetic Genetic Array Analysis","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; University of Toronto","funders":"","keywords":"Genetics; Mutant; Computational biology; Biology; Gene; Genetic analysis; Allele; Mutation; Computer science","authors":[{"name":"Elena Kuzmin","is_ca":true},{"name":"Michael Costanzo","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01640254900568938,"gpt":0.287443695608684,"spread":0.2710411466029946,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001623007,0.001428732,0.001487663,0.003491316,0.001008375,0.002196099,0.001757436,0.0009343445,0.02659722],"category_scores_gemma":[0.002920592,0.0009324668,0.001450527,0.003174464,0.00062308,0.0006750935,0.001451538,0.001724775,0.01659897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007840702,"about_ca_system_score_gemma":0.0008337823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009534577,"about_ca_topic_score_gemma":0.001653539,"domain_scores_codex":[0.9974551,0.0003227639,0.0002180723,0.0007273162,0.001029817,0.0002469906],"domain_scores_gemma":[0.99799,0.0005385844,0.0002361468,0.0004619325,0.0005688905,0.0002043684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006606826,0.0002419767,0.002562805,0.0007265374,0.0001738755,0.0005564147,0.0002221418,0.006861205,0.8510496,0.01656464,0.01816657,0.1022136],"study_design_scores_gemma":[0.0001107581,0.0004810797,0.003770725,0.00008153019,0.0001562035,0.001068536,0.0001295019,0.04943055,0.7447178,0.008629893,0.1912467,0.000176673],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03306925,0.0009059076,0.9001507,0.0003260712,0.0004662392,0.001141038,0.02197221,0.01736878,0.02459972],"genre_scores_gemma":[0.0855002,0.00139258,0.831786,0.0004126645,0.00008116222,0.00299591,0.04632324,0.004705571,0.02680276],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02659722,"threshold_uncertainty_score":0.08897662,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031077285","doi":"10.1101/pdb.prot5487","title":"Electrophysiological Recording from <i>Drosophila</i> Larval Body-Wall Muscles","year":2010,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Oklahoma Center for the Advancement of Science and Technology","keywords":"Larva; Electrophysiology; Drosophila (subgenus); Anatomy; Biology; Zoology; Neuroscience; Ecology; Genetics","authors":[{"name":"Bing Zhang","is_ca":false},{"name":"Bryan A. Stewart","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03532909795043457,"gpt":0.3018323302167328,"spread":0.2665032322662982,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000291177,0.0004586634,0.0003855987,0.0003968238,0.0007356489,0.000384352,0.0007713931,0.0004902534,0.004294585],"category_scores_gemma":[0.000251725,0.000285467,0.0003160718,0.0003563343,0.0004596155,0.0004243238,0.0003196897,0.001014581,0.002384945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003032748,"about_ca_system_score_gemma":0.0003474793,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008408577,"about_ca_topic_score_gemma":0.00253416,"domain_scores_codex":[0.9997733,0.00002542827,0.00004042015,0.0000709684,0.00006766738,0.00002217466],"domain_scores_gemma":[0.9998565,0.00004415384,0.00001830587,0.00003320318,0.00002946429,0.00001834698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002800901,0.00000934181,0.0000863872,0.00008315314,0.000004480224,0.00008864151,0.00003175069,0.00004284992,0.9957997,0.0003367784,0.0002989515,0.003189856],"study_design_scores_gemma":[0.00003710781,0.0002071019,0.007513803,0.00006344069,0.00003266105,0.0007066772,0.00007667617,0.001136861,0.970982,0.0005234691,0.0187019,0.0000181933],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5384078,0.004013557,0.3953197,0.0008456932,0.0003875741,0.001993111,0.01388578,0.003122803,0.042024],"genre_scores_gemma":[0.4628506,0.008033138,0.4878674,0.0008646986,0.0001475715,0.00369839,0.01074468,0.0007811085,0.02501234],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004294585,"threshold_uncertainty_score":0.01436681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156363787","doi":"10.1101/pdb.prot085100","title":"Rapid and Efficient Plasmid Construction by Homologous Recombination in Yeast","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"In vitro recombination; Homologous recombination; Plasmid; Cloning (programming); Insert (composites); Molecular cloning; Biology; DNA; Restriction enzyme; Genetics; Cloning vector; Computational biology; Saccharomyces cerevisiae; Recombinant DNA; Ligation; Yeast; Molecular biology; Gene; Computer science; Complementary DNA","authors":[{"name":"Jolanda van Leeuwen","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Guihong Tan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02137356066978993,"gpt":0.2760748877763225,"spread":0.2547013271065326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001987938,0.001065684,0.001494879,0.001703944,0.0009225669,0.00135334,0.001782417,0.0009312397,0.002726595],"category_scores_gemma":[0.0008636639,0.0009658861,0.001044722,0.001703186,0.0006512922,0.0008119642,0.001791847,0.002798754,0.006456971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000602608,"about_ca_system_score_gemma":0.000842544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007911266,"about_ca_topic_score_gemma":0.001094957,"domain_scores_codex":[0.9981624,0.0002930943,0.0002722929,0.000289118,0.0008077034,0.000175365],"domain_scores_gemma":[0.9996172,0.00006989868,0.00005617984,0.0001076906,0.00007886068,0.00007020137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000127726,0.0001044775,0.0001316156,0.0005011973,0.00002772729,0.0003166965,0.0001500575,0.0005386763,0.9669124,0.00355373,0.002830981,0.02480475],"study_design_scores_gemma":[0.00009640818,0.000303726,0.0008883991,0.00008756519,0.00005127623,0.001021722,0.000075769,0.002964251,0.8255359,0.001101387,0.1677948,0.00007878564],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.109539,0.01027297,0.8430231,0.000734174,0.0007975954,0.004331208,0.00919134,0.01043137,0.01167924],"genre_scores_gemma":[0.2274758,0.01559136,0.7019842,0.0002753631,0.0001114385,0.002870072,0.02941261,0.002604654,0.01967455],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002726595,"threshold_uncertainty_score":0.01051331,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995335719","doi":"10.1101/pdb.prot5095","title":"Isolation of <i>Amphimedon</i> Developmental Material","year":2008,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Isolation (microbiology); Biology; Evolutionary biology; Bioinformatics","authors":[{"name":"Sally P. Leys","is_ca":true},{"name":"Claire Larroux","is_ca":false},{"name":"Marie Gauthier","is_ca":false},{"name":"Maja Adamska","is_ca":false},{"name":"Bryony Fahey","is_ca":false},{"name":"Gemma S. Richards","is_ca":false},{"name":"Sandie M. Degnan","is_ca":false},{"name":"Bernard M. Degnan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01579070469492137,"gpt":0.2472649719086674,"spread":0.2314742672137461,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003436731,0.0005613244,0.000349366,0.0008016545,0.0007116459,0.0005212829,0.0006887807,0.0003347375,0.01246378],"category_scores_gemma":[0.0003663094,0.000343327,0.0003586368,0.0004654213,0.000360013,0.0003004376,0.0005093077,0.0008274299,0.01000371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002947446,"about_ca_system_score_gemma":0.0004081783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009537289,"about_ca_topic_score_gemma":0.002616831,"domain_scores_codex":[0.999797,0.00002060476,0.00003248234,0.00006397595,0.00005141558,0.00003453795],"domain_scores_gemma":[0.999698,0.00005423478,0.00004186609,0.00008468384,0.00006933586,0.00005190956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001372025,0.00002697385,0.0006028389,0.0001282205,0.000006471089,0.0003241136,0.00003586336,0.00003670278,0.992407,0.0005170464,0.001025621,0.004751923],"study_design_scores_gemma":[0.0001505458,0.0007135706,0.06843435,0.0003195348,0.0001017005,0.004070183,0.0001974924,0.0006716654,0.6663525,0.0008474159,0.2580737,0.00006741543],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.6069245,0.008367054,0.1339946,0.001108507,0.0008872293,0.00508245,0.1232571,0.00345054,0.1169279],"genre_scores_gemma":[0.5135494,0.005659984,0.1318113,0.001211358,0.0004131988,0.003962064,0.2628343,0.001360137,0.07919828],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.01246378,"threshold_uncertainty_score":0.04169548,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062389087","doi":"10.1101/pdb.prot5011","title":"Construction and Characterization of Adenovirus Vectors","year":2009,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; ALS Society of Canada","keywords":"Transduction (biophysics); Transgene; Plasmid; Biology; Gene delivery; Vector (molecular biology); Cloning (programming); Gene; Genetic enhancement; Computational biology; Viral vector; In vivo; Transfection; Genome; Cloning vector; Genetics; Recombinant DNA; Computer science","authors":[{"name":"P. Joel Ross","is_ca":false},{"name":"Robin J. Parks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01600136121852969,"gpt":0.2933106057832059,"spread":0.2773092445646762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002108696,0.0008357642,0.0009311953,0.001702944,0.0007174586,0.001360407,0.001069475,0.0005353318,0.003512947],"category_scores_gemma":[0.002094103,0.0006027915,0.0005405425,0.001157772,0.0005128471,0.0005688936,0.0003983684,0.001437653,0.004299945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007869566,"about_ca_system_score_gemma":0.0009644088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007270015,"about_ca_topic_score_gemma":0.0008668028,"domain_scores_codex":[0.9984013,0.0002882062,0.0003606596,0.0002129323,0.000551263,0.0001855533],"domain_scores_gemma":[0.9987293,0.0003600237,0.0001389125,0.0002285148,0.0003958161,0.0001473063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003702778,0.0002765562,0.001248957,0.00129928,0.0000438079,0.000357116,0.0002994789,0.001375108,0.9376978,0.004307445,0.002521151,0.05020309],"study_design_scores_gemma":[0.00006614762,0.0006451837,0.002458114,0.0001437951,0.00005086963,0.0007720228,0.0001316492,0.002278891,0.8194327,0.0010219,0.172949,0.00004965959],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3280537,0.02515336,0.5449877,0.001417791,0.001157736,0.01248046,0.05146655,0.002627894,0.03265487],"genre_scores_gemma":[0.3343762,0.0269599,0.5062234,0.000418406,0.0002385138,0.006833718,0.09325578,0.0008542014,0.03083984],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003512947,"threshold_uncertainty_score":0.01175201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999419823","doi":"10.1101/pdb.emo108","title":"The Demosponge <i>Amphimedon queenslandica</i>: Reconstructing the Ancestral Metazoan Genome and Deciphering the Origin of Animal Multicellularity","year":2008,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Multicellular organism; Sponge; Evolutionary biology; Marine invertebrates; Biological dispersal; Population; Genome; Ecology; Zoology; Genetics; Gene; Paleontology","authors":[{"name":"Bernard M. Degnan","is_ca":false},{"name":"Maja Adamska","is_ca":false},{"name":"Alina Craigie","is_ca":false},{"name":"Sandie M. Degnan","is_ca":false},{"name":"Bryony Fahey","is_ca":false},{"name":"Marie Gauthier","is_ca":false},{"name":"John N. A. Hooper","is_ca":false},{"name":"Claire Larroux","is_ca":false},{"name":"Sally P. Leys","is_ca":true},{"name":"Erica Lovas","is_ca":false},{"name":"Gemma S. Richards","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02875494021812797,"gpt":0.2729369134409351,"spread":0.2441819732228072,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001786334,0.0002551346,0.0002289035,0.0007528806,0.0005239355,0.0004536367,0.0003358092,0.0004452418,0.001984044],"category_scores_gemma":[0.0002614008,0.0001894215,0.000277257,0.0006254206,0.0004476409,0.0004353894,0.0005309375,0.000454348,0.0004353667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008706955,"about_ca_system_score_gemma":0.0004487555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01201265,"about_ca_topic_score_gemma":0.01606084,"domain_scores_codex":[0.9999352,0.000004087926,0.000002662034,0.00003213913,0.00001218868,0.00001380772],"domain_scores_gemma":[0.9998394,0.00003003597,0.00005148651,0.00001997886,0.00002746044,0.00003162154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003564387,0.00002653071,0.0519526,0.0004320321,0.00003385204,0.0004693613,0.001514399,0.001052448,0.904029,0.0007684311,0.000596442,0.03876852],"study_design_scores_gemma":[0.00004376193,0.0002730021,0.920357,0.0001705786,0.00007980589,0.001246369,0.00150345,0.003240681,0.02911094,0.0009160647,0.04301529,0.00004298067],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.9858463,0.001529807,0.005525385,0.0003436252,0.00001455713,0.0000355725,0.003286788,0.0002029981,0.003214885],"genre_scores_gemma":[0.9781706,0.0009218249,0.01135324,0.0001738175,0.00001442358,0.00003762554,0.004603043,0.00007828505,0.004647105],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.01201265,"threshold_uncertainty_score":0.02388549,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1844860071","doi":"10.1101/pdb.prot086256","title":"Monitoring Autophagic Flux by Using Lysosomal Inhibitors and Western Blotting of Endogenous MAP1LC3B","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Autophagy; Flux (metallurgy); Endogeny; Lysosome; Blot; Drug; Chemistry; Cell biology; Pharmacology; Biochemistry; Biology; Enzyme; Apoptosis","authors":[{"name":"Suganthi Chittaranjan","is_ca":true},{"name":"Svetlana Bortnik","is_ca":true},{"name":"Sharon M. Gorski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06894107139366758,"gpt":0.3213398820380909,"spread":0.2523988106444233,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001625763,0.001961462,0.001118189,0.003343415,0.00190256,0.001019032,0.002079153,0.00105738,0.004985078],"category_scores_gemma":[0.0004782483,0.001389279,0.001184379,0.002707455,0.001022139,0.00122073,0.001280822,0.004262606,0.004399511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001350772,"about_ca_system_score_gemma":0.001202878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00147309,"about_ca_topic_score_gemma":0.004691371,"domain_scores_codex":[0.9978217,0.0003534441,0.0002969876,0.0005496585,0.0006990603,0.0002791157],"domain_scores_gemma":[0.9994401,0.0001357586,0.00009534249,0.0001314697,0.0001139243,0.00008336557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007535834,0.00006882664,0.00006492351,0.0002077721,0.00001467924,0.00005043894,0.00004690419,0.00009257601,0.9955372,0.0008168048,0.0007201739,0.002304283],"study_design_scores_gemma":[0.00005116008,0.0001468588,0.001853986,0.00004540999,0.00004049072,0.0002813348,0.00002830727,0.002190125,0.9716436,0.0004910504,0.02319465,0.00003289672],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.1973453,0.01645341,0.7155015,0.002284323,0.001282085,0.003792322,0.01653041,0.008703521,0.03810716],"genre_scores_gemma":[0.1539301,0.02278315,0.7201402,0.001230807,0.0002662518,0.01577642,0.02985689,0.001782184,0.05423396],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.004985078,"threshold_uncertainty_score":0.01667672,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2329142534","doi":"10.1101/pdb.prot080226","title":"Fluorescent Visualization of Germline Apoptosis in Living <i>Caenorhabditis elegans</i>","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Caenorhabditis elegans; Apoptosis; Green fluorescent protein; Acridine orange; Cell biology; Biology; RNA interference; Fluorescence; Fluorescence microscope; Programmed cell death; High-content screening; Cell; Molecular biology; Gene; RNA; Genetics","authors":[{"name":"Benjamin Lant","is_ca":true},{"name":"W. Brent Derry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00912868035645164,"gpt":0.2543287361151239,"spread":0.2452000557586723,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002685056,0.0004036045,0.0002052428,0.0005344615,0.0006815467,0.0003573808,0.0008311439,0.0003852682,0.003351911],"category_scores_gemma":[0.0001526329,0.0003251542,0.0002988062,0.0002756465,0.0003674694,0.0002943038,0.0003655667,0.001043124,0.001104363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006825478,"about_ca_system_score_gemma":0.0005270241,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003994691,"about_ca_topic_score_gemma":0.009445993,"domain_scores_codex":[0.9998025,0.00001686479,0.00001946034,0.00005537026,0.0000675495,0.00003829607],"domain_scores_gemma":[0.9998147,0.00003843022,0.00004595856,0.00003397703,0.0000360843,0.00003081477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001954068,0.0000135747,0.00007593571,0.00005381836,0.000002380883,0.00005271373,0.00002072061,0.00007887937,0.9963247,0.0005366238,0.0005334938,0.002287529],"study_design_scores_gemma":[0.00001099249,0.00004323247,0.001663396,0.00002228269,0.000006397268,0.0002890799,0.00001752475,0.0008828947,0.9881651,0.0001185255,0.008770383,0.00001023302],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7387991,0.003103747,0.1977955,0.0009990064,0.000374793,0.0006813243,0.008896884,0.006413822,0.04293577],"genre_scores_gemma":[0.6643698,0.005751268,0.2725785,0.0006309203,0.00007461329,0.001179345,0.009052056,0.001475948,0.04488768],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003994691,"threshold_uncertainty_score":0.01121318,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2258517306","doi":"10.1101/pdb.prot085118","title":"Analysis of Replicating Yeast Chromosomes by DNA Combing","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Combing; DNA; DNA replication; Yeast; Biology; Chemistry; Cell biology; Molecular biology; Genetics; Materials science","authors":[{"name":"David Gallo","is_ca":true},{"name":"Gang Wang","is_ca":true},{"name":"Christopher M. Yip","is_ca":true},{"name":"Grant W. Brown","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01177796719087136,"gpt":0.2656573748553598,"spread":0.2538794076644885,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003004711,0.000515111,0.0003498129,0.001931161,0.0004281913,0.0003172395,0.0003275602,0.0003060592,0.001763295],"category_scores_gemma":[0.0002543663,0.0002678843,0.000378101,0.001296383,0.0003183435,0.0003283873,0.0003004493,0.0006694579,0.0006338101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003175705,"about_ca_system_score_gemma":0.0001760555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005194152,"about_ca_topic_score_gemma":0.001275211,"domain_scores_codex":[0.9997661,0.00003371947,0.0000228809,0.00007338521,0.00008327212,0.00002068344],"domain_scores_gemma":[0.9998031,0.00006723866,0.00003959571,0.00004181941,0.00002840032,0.00001987988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002634731,0.00001072978,0.0002797539,0.00004280941,0.000008258244,0.00003935177,0.00002901003,0.00009831522,0.9957419,0.0001495021,0.00002886848,0.00354514],"study_design_scores_gemma":[0.000007354619,0.0001827364,0.006157778,0.00001040861,0.00002905429,0.0002273354,0.00004982855,0.001641406,0.9870197,0.000225934,0.004439452,0.000008934065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.683528,0.004819249,0.2975429,0.0001758009,0.0001716126,0.000686909,0.003027718,0.001790671,0.008257188],"genre_scores_gemma":[0.6488354,0.004536093,0.3354674,0.0001124203,0.00004182596,0.00109533,0.003267704,0.0002745195,0.006369314],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001931161,"threshold_uncertainty_score":0.005898774,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001713897","doi":"10.1101/pdb.prot5148","title":"Starting and Maintaining <i>Monosiga brevicollis</i> Cultures","year":2009,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Bacteria; Axenic; Yeast; Microbiology; Isolation (microbiology); Biochemistry; Genetics","authors":[{"name":"Nicole King","is_ca":true},{"name":"Susan L. Young","is_ca":false},{"name":"Monika Abedin","is_ca":false},{"name":"Martin Carr","is_ca":false},{"name":"B. S. C. Leadbeater","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01358261655157119,"gpt":0.2704904595695737,"spread":0.2569078430180026,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004957705,0.001154383,0.0007676376,0.001084097,0.001648645,0.00105074,0.00201543,0.0006600202,0.006326865],"category_scores_gemma":[0.0006137845,0.000568687,0.0007414501,0.0007148032,0.000513495,0.0004705969,0.00217825,0.001452642,0.008796912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008717734,"about_ca_system_score_gemma":0.001045538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01224321,"about_ca_topic_score_gemma":0.03808147,"domain_scores_codex":[0.9989718,0.0001025893,0.0001495437,0.0002578686,0.0003358822,0.0001823698],"domain_scores_gemma":[0.9994113,0.00007558354,0.00006910107,0.0001597208,0.0001949835,0.00008927346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001555058,0.00006418722,0.001442138,0.0002115658,0.00001540361,0.0002314492,0.0001745249,0.0001678881,0.986855,0.0004437716,0.002526088,0.007712459],"study_design_scores_gemma":[0.00003413281,0.0004246634,0.01602265,0.000300302,0.00008722736,0.000518968,0.0003370112,0.0009373198,0.8821856,0.000320813,0.09872867,0.0001026158],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.6900041,0.008643269,0.1012706,0.001878282,0.001729232,0.01132002,0.06918888,0.00992279,0.1060429],"genre_scores_gemma":[0.5115876,0.006398434,0.2332185,0.001226103,0.000297257,0.01062187,0.1385306,0.00239677,0.09572289],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01224321,"threshold_uncertainty_score":0.02434391,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2336308079","doi":"10.1101/pdb.prot088880","title":"Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Center for Research Resources; Canadian Institutes of Health Research; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; National Institutes of Health","keywords":"Schizosaccharomyces pombe; Budding yeast; Yeast; Candida albicans; Saccharomyces cerevisiae; Biology; Schizosaccharomyces; Computational biology; Database; Bioinformatics; Genetics; Computer science","authors":[{"name":"Rose Oughtred","is_ca":false},{"name":"Andrew Chatr‐aryamontri","is_ca":true},{"name":"Bobby‐Joe Breitkreutz","is_ca":true},{"name":"Christie Chang","is_ca":false},{"name":"Jennifer Rust","is_ca":false},{"name":"Chandra L. Theesfeld","is_ca":false},{"name":"Sven Heinicke","is_ca":false},{"name":"Ashton Breitkreutz","is_ca":true},{"name":"Daici Chen","is_ca":true},{"name":"Jodi Hirschman","is_ca":false},{"name":"Nadine K. Kolas","is_ca":true},{"name":"Michael Livstone","is_ca":false},{"name":"Julie Nixon","is_ca":false},{"name":"Lara O’Donnell","is_ca":true},{"name":"Lindsay Ramage","is_ca":false},{"name":"Andrew Winter","is_ca":false},{"name":"Teresa Reguly","is_ca":true},{"name":"Adnane Sellam","is_ca":true},{"name":"Chris Stark","is_ca":true},{"name":"Lorrie Boucher","is_ca":true},{"name":"Kara Dolinski","is_ca":false},{"name":"Mike Tyers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03019394413057767,"gpt":0.2791532204173295,"spread":0.2489592762867519,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001978756,0.001914414,0.002173329,0.004305308,0.001603105,0.002943456,0.003498955,0.0006256716,0.01813383],"category_scores_gemma":[0.002727151,0.001083936,0.00159731,0.007908515,0.0003807229,0.001830952,0.003031536,0.00233551,0.01333269],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001613685,"about_ca_system_score_gemma":0.002454371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01526246,"about_ca_topic_score_gemma":0.01312293,"domain_scores_codex":[0.9989096,0.0002147346,0.0001731791,0.0002120431,0.0003896704,0.0001008304],"domain_scores_gemma":[0.9991469,0.0001417907,0.0000521165,0.0003709669,0.0001618142,0.0001262473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001880539,0.0004128865,0.006933059,0.003873723,0.001005011,0.001240665,0.0009707243,0.0230992,0.04635219,0.04495571,0.7665983,0.102678],"study_design_scores_gemma":[0.0007833641,0.0001017052,0.010268,0.000505221,0.0002742507,0.0006482788,0.0004347731,0.04808068,0.02916474,0.05172347,0.8577009,0.0003146238],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.01766805,0.002118403,0.1327257,0.0009161526,0.0003289126,0.0008285085,0.6774315,0.1415563,0.02642641],"genre_scores_gemma":[0.04319602,0.002241669,0.1373932,0.0002617896,0.00004809918,0.001549717,0.7973525,0.01471673,0.003240282],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01813383,"threshold_uncertainty_score":0.06066364,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063276354","doi":"10.1101/pdb.prot5019","title":"High-Resolution Fluorescent In Situ Hybridization of <i>Drosophila</i> Embryos and Tissues: Figure 1.","year":2008,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"In situ hybridization; Drosophila (subgenus); In situ; Embryo; Fluorescence; High resolution; Biology; Cell biology; Molecular biology; Chemistry; Genetics; Gene; Physics; Remote sensing; Gene expression; Optics; Geology","authors":[{"name":"Éric Lécuyer","is_ca":true},{"name":"Aleksandar Necakov","is_ca":true},{"name":"Lucía Cáceres","is_ca":true},{"name":"Henry M. Krause","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0113559684622166,"gpt":0.241130899722739,"spread":0.2297749312605224,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001706217,0.0008383452,0.0003550119,0.0005485812,0.0008665728,0.0006245366,0.0009871719,0.0006758625,0.04030733],"category_scores_gemma":[0.000105293,0.000539761,0.0005906139,0.0004354859,0.0003359145,0.0003848277,0.0003802492,0.00133233,0.02628376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008249891,"about_ca_system_score_gemma":0.0005845053,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002986833,"about_ca_topic_score_gemma":0.008415384,"domain_scores_codex":[0.9998274,0.00001815262,0.00001011951,0.00005818308,0.00006051375,0.00002561519],"domain_scores_gemma":[0.9998875,0.00001698304,0.00001379903,0.00003082936,0.00002665556,0.00002414775],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006394424,0.00002298886,0.00007951482,0.0001895023,0.000005807869,0.0001461605,0.00003012374,0.00017394,0.9811349,0.002168673,0.008601662,0.007382666],"study_design_scores_gemma":[0.00006001008,0.0001058051,0.005468432,0.0001178919,0.00002917521,0.001427376,0.00006058477,0.001264942,0.7567604,0.001059741,0.2336109,0.0000348266],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1231411,0.007470765,0.5537636,0.003059529,0.001767582,0.002032544,0.06938048,0.0154717,0.2239128],"genre_scores_gemma":[0.2258328,0.006838118,0.5105758,0.00159062,0.0002477534,0.002144014,0.06157556,0.003217812,0.1879776],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.04030733,"threshold_uncertainty_score":0.1348414,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039905887","doi":"10.1101/pdb.top069765","title":"Transgenic Mouse Models—A Seminal Breakthrough in Oncogene Research","year":2013,"lang":"en","type":"review","venue":"Cold Spring Harbor Protocols","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Transgene; Genetically modified mouse; Carcinogenesis; Oncogene; Gain of function; Biology; Function (biology); Suppressor; Cancer; Metastasis; Computational biology; Cancer research; Cell biology; Gene; Phenotype; Genetics; Cell cycle","authors":[{"name":"Harvey W. Smith","is_ca":true},{"name":"William J. Muller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2092022179098973,"gpt":0.4640379351191913,"spread":0.254835717209294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002235406,0.001361186,0.001389698,0.002493176,0.000428424,0.00138256,0.001975662,0.002006132,0.003249645],"category_scores_gemma":[0.001342153,0.0005927955,0.000776808,0.001533322,0.001958085,0.00242318,0.001117425,0.006271225,0.002909944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001498753,"about_ca_system_score_gemma":0.001590948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001020104,"about_ca_topic_score_gemma":0.001296456,"domain_scores_codex":[0.999315,0.0001472216,0.00006203846,0.0001131487,0.0003075518,0.0000549099],"domain_scores_gemma":[0.9993345,0.0003235226,0.00005719702,0.00004288723,0.0001689138,0.00007294974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001461902,0.0001524517,0.0002418759,0.01038706,0.00008818519,0.0006677145,0.0002065428,0.000636077,0.02635967,0.07188956,0.1415984,0.7476263],"study_design_scores_gemma":[0.0000130218,0.00004661311,0.0001344221,0.0006812021,0.00002520341,0.0007497251,0.00001325651,0.00004516824,0.002377936,0.00385701,0.9920403,0.0000160797],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003526282,0.9842779,0.005152944,0.001834325,0.001612057,0.00004544698,0.0001071406,0.0001192439,0.006498393],"genre_scores_gemma":[0.001867335,0.9882659,0.003333885,0.001658264,0.0006390366,0.00007932726,0.0001879508,0.00003557122,0.003932656],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003249645,"threshold_uncertainty_score":0.0118221,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2414155443","doi":"10.1101/pdb.prot091306","title":"Using Multiple Whole-Cell Recordings to Study Spike-Timing-Dependent Plasticity in Acute Neocortical Slices","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neural dynamics and brain function","field":"Neuroscience","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre; Montreal General Hospital","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Plasticity; Spike-timing-dependent plasticity; Neuroscience; Spike (software development); Synaptic plasticity; Focus (optics); Neocortex; Biology; Computer science; Materials science; Physics; Optics","authors":[{"name":"Txomin Lalanne","is_ca":true},{"name":"Therése Abrahamsson","is_ca":true},{"name":"P. Jesper Sjöström","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07798960145614289,"gpt":0.3238971978999964,"spread":0.2459075964438535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003132014,0.0009397625,0.0006869776,0.0004033671,0.0007106809,0.0005880236,0.001414325,0.0007803083,0.002425731],"category_scores_gemma":[0.000181429,0.0003970145,0.0007237201,0.000304464,0.0005420023,0.001003164,0.0009900451,0.002774254,0.001054915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005414235,"about_ca_system_score_gemma":0.0005463645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001907608,"about_ca_topic_score_gemma":0.008621501,"domain_scores_codex":[0.9997309,0.0000107151,0.00003758763,0.00009783048,0.0000814501,0.0000416449],"domain_scores_gemma":[0.9997831,0.00003381768,0.00003819255,0.00005258476,0.0000366264,0.00005582979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001383771,0.000009402285,0.00003968125,0.00003875472,0.000005656802,0.00003433298,0.00001380539,0.0000706982,0.9978228,0.0001354322,0.00004485686,0.001770806],"study_design_scores_gemma":[0.00002324902,0.0001317255,0.002514983,0.00001696722,0.00003131876,0.0003093885,0.00002530448,0.003005277,0.9909574,0.0002907986,0.002673811,0.00001982691],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.510237,0.002254095,0.4691136,0.0005475299,0.0006198812,0.0009097219,0.004577308,0.003132653,0.008608148],"genre_scores_gemma":[0.5123562,0.002552653,0.4719566,0.0002817112,0.0001114169,0.002076678,0.002049888,0.000827831,0.007787162],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002425731,"threshold_uncertainty_score":0.008114874,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964853412","doi":"10.1101/pdb.prot080341","title":"Monitoring Autophagy in <i>Drosophila</i> Using Fluorescent Reporters in the UAS-GAL4 System","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"mCherry; ATG8; Autophagy; Green fluorescent protein; Cell biology; Autophagosome; Chemistry; Biology; Biochemistry; Gene","authors":[{"name":"Lindsay DeVorkin","is_ca":true},{"name":"Sharon M. Gorski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03340002596848815,"gpt":0.3144122082435635,"spread":0.2810121822750753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002951873,0.0005465012,0.0002996806,0.0006346908,0.0005280434,0.0003891881,0.0006653338,0.0004355673,0.001417687],"category_scores_gemma":[0.0001397727,0.000368694,0.0003911568,0.0003855987,0.0003665898,0.0003609353,0.0004220739,0.0009284344,0.0008707988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009065139,"about_ca_system_score_gemma":0.000366437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002922673,"about_ca_topic_score_gemma":0.006051553,"domain_scores_codex":[0.9997569,0.00003173367,0.00003006773,0.000072574,0.00007335949,0.00003542399],"domain_scores_gemma":[0.9998206,0.0000285169,0.00006486614,0.00002330253,0.00003369796,0.0000289781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002131598,0.000008479091,0.0001404997,0.00002462862,0.000002673898,0.00001787016,0.00001129858,0.00006714607,0.9987255,0.00009414242,0.0001221314,0.0007643783],"study_design_scores_gemma":[0.00000631997,0.00003598585,0.001539405,0.000005039229,0.00000662485,0.0001187141,0.00001698618,0.0007068928,0.995391,0.00004029052,0.002125671,0.000007148029],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.8774663,0.001759071,0.09565729,0.0004780219,0.0001466086,0.0004760041,0.008903714,0.003073894,0.01203902],"genre_scores_gemma":[0.788585,0.003470634,0.1775361,0.0004789626,0.00003297487,0.0009873216,0.009449771,0.001120962,0.01833818],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.002922673,"threshold_uncertainty_score":0.006577253,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2413834665","doi":"10.1101/pdb.prot091298","title":"Long-Term Potentiation by Theta-Burst Stimulation Using Extracellular Field Potential Recordings in Acute Hippocampal Slices","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre; Montreal General Hospital","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research","keywords":"Long-term potentiation; Hippocampal formation; Neuroscience; Hippocampus; Stimulation; Extracellular; Computer science; Biology; Cell biology","authors":[{"name":"Therése Abrahamsson","is_ca":true},{"name":"Txomin Lalanne","is_ca":true},{"name":"Alanna J. Watt","is_ca":true},{"name":"P. Jesper Sjöström","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05293224260644517,"gpt":0.3551698622977065,"spread":0.3022376196912613,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004440678,0.001249322,0.0006512769,0.0005932746,0.0008754932,0.0004926487,0.001415917,0.0005459374,0.002564559],"category_scores_gemma":[0.0002215921,0.0005799648,0.000928887,0.0004766908,0.0004616529,0.0007302322,0.0008209911,0.002131099,0.002855704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000408786,"about_ca_system_score_gemma":0.0008621805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002301971,"about_ca_topic_score_gemma":0.008134629,"domain_scores_codex":[0.9996675,0.00002569504,0.00006300507,0.00006300808,0.0001224799,0.00005828028],"domain_scores_gemma":[0.9998415,0.00002397002,0.00002296069,0.00003928923,0.00004352913,0.00002877758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002384615,0.00001455694,0.00003199079,0.00006635357,0.000005774849,0.0000579767,0.00002299166,0.0000408628,0.9971288,0.0001396043,0.0001453339,0.002321826],"study_design_scores_gemma":[0.00003960264,0.0002692818,0.00325617,0.00006224604,0.00004099822,0.0003337202,0.00002918523,0.0005998602,0.985952,0.0002772731,0.00911666,0.00002289233],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4345699,0.00723113,0.4874594,0.001086298,0.001434605,0.006399147,0.01727533,0.005258256,0.03928598],"genre_scores_gemma":[0.3905419,0.0162851,0.5445812,0.0006279026,0.0002426186,0.01223012,0.009830099,0.0008687981,0.02479233],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002564559,"threshold_uncertainty_score":0.008579254,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055583450","doi":"10.1101/pdb.top070458","title":"Analysis of Apoptosis in <i>Caenorhabditis elegans</i>","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Caenorhabditis elegans; Multicellular organism; Apoptosis; Biology; Model organism; Germline; Cell biology; Somatic cell; Programmed cell death; Organism; Caenorhabditis; Genetics; Computational biology; Cell; Gene","authors":[{"name":"Benjamin Lant","is_ca":true},{"name":"W. Brent Derry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009377017873168213,"gpt":0.2476656472255526,"spread":0.2382886293523844,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001898633,0.0003592079,0.0001626354,0.0007116222,0.0005947917,0.0002890131,0.0006176755,0.0002801546,0.0008243832],"category_scores_gemma":[0.0001429035,0.0001967989,0.0002998221,0.0002926747,0.0003066343,0.0002251266,0.0002899399,0.0007694333,0.0003790429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007018968,"about_ca_system_score_gemma":0.0003929487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004282885,"about_ca_topic_score_gemma":0.006832256,"domain_scores_codex":[0.99983,0.00001123792,0.00002108763,0.00004587177,0.00006479855,0.00002687479],"domain_scores_gemma":[0.9998404,0.00002622981,0.00005154418,0.00001666782,0.00003733544,0.00002794711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002300622,0.000009562675,0.0002253192,0.00003395591,0.0000023899,0.00004098085,0.00001290359,0.00005511605,0.9976822,0.0001683002,0.00009837133,0.001647972],"study_design_scores_gemma":[0.00001153326,0.00008832645,0.008828629,0.00002027711,0.00001258103,0.0004173148,0.00002593425,0.0009047506,0.9837136,0.0001272056,0.005838741,0.00001120437],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9197112,0.005772696,0.05448739,0.0004394714,0.0001876833,0.0003975848,0.005899583,0.001456604,0.01164775],"genre_scores_gemma":[0.8863227,0.00771836,0.08707668,0.0003889368,0.00004894425,0.0005516941,0.00471254,0.0004075521,0.01277251],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004282885,"threshold_uncertainty_score":0.008515954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014353906","doi":"10.1101/pdb.prot5494","title":"Two-Photon Fluorescence Microscopy of Cerebral Hemodynamics","year":2010,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Optical Imaging and Spectroscopy Techniques","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Two-photon excitation microscopy; Hemodynamics; Haemodynamic response; Somatosensory system; Barrel cortex; Neuroscience; Stimulation; Premovement neuronal activity; Microscopy; Fluorescence microscope; Biomedical engineering; Fluorescence; Medicine; Biology; Optics; Pathology; Physics; Internal medicine","authors":[{"name":"Liis Lindvere","is_ca":true},{"name":"Adrienne Dorr","is_ca":true},{"name":"Bojana Stefanovic","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01149901219342573,"gpt":0.3320992605247331,"spread":0.3206002483313073,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002523046,0.0002847885,0.0001970738,0.0005042304,0.0004551011,0.0003136532,0.0005061633,0.0006967404,0.002421146],"category_scores_gemma":[0.0002255466,0.0001935622,0.0001507855,0.0002588466,0.0004210881,0.0003966521,0.0004131351,0.001242084,0.0004165624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006991462,"about_ca_system_score_gemma":0.000508935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00158012,"about_ca_topic_score_gemma":0.002116031,"domain_scores_codex":[0.9998711,0.00002100053,0.000004202694,0.00003518671,0.00004240254,0.00002602073],"domain_scores_gemma":[0.9998639,0.0000647483,0.00001414364,0.000018271,0.00002136843,0.00001759168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004021927,0.00002283318,0.0001366475,0.00003180238,0.000003176554,0.00007416253,0.00002757882,0.0004418603,0.9939721,0.001438083,0.0004482146,0.003363312],"study_design_scores_gemma":[0.00004597995,0.0001351898,0.008452103,0.00001812082,0.00001139566,0.0006693001,0.00007751791,0.02891066,0.9530087,0.001921016,0.006711163,0.00003895326],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7239289,0.001694286,0.25302,0.001779895,0.000141481,0.0001310417,0.001443578,0.001238154,0.01662275],"genre_scores_gemma":[0.836709,0.002052405,0.1491747,0.0002697583,0.00006159263,0.000334019,0.0004401758,0.0001049428,0.01085328],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002421146,"threshold_uncertainty_score":0.008099496,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2409086625","doi":"10.1101/pdb.top087262","title":"In Vitro Investigation of Synaptic Plasticity","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre; Montreal General Hospital","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research","keywords":"Neocortex; Neuroscience; Hippocampal formation; Long-term potentiation; Excitatory postsynaptic potential; Pyramidal cell; Synaptic plasticity; Plasticity; Slice preparation; Spike-timing-dependent plasticity; Computer science; Electrophysiology; Biology; Physics; Inhibitory postsynaptic potential","authors":[{"name":"Therése Abrahamsson","is_ca":true},{"name":"Txomin Lalanne","is_ca":true},{"name":"Alanna J. Watt","is_ca":true},{"name":"P. Jesper Sjöström","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0709999115892941,"gpt":0.3460459838318736,"spread":0.2750460722425795,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003475866,0.0007362938,0.0005295264,0.0003972696,0.0004465373,0.0004221771,0.001058989,0.000529058,0.001901262],"category_scores_gemma":[0.0002590819,0.0003440948,0.0005554697,0.0003344192,0.0004455451,0.0005396928,0.0007176319,0.001558405,0.001225616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004819671,"about_ca_system_score_gemma":0.0002676782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006050573,"about_ca_topic_score_gemma":0.001437694,"domain_scores_codex":[0.9995505,0.00008319091,0.00006113311,0.0001149422,0.0001305715,0.00005955681],"domain_scores_gemma":[0.9996393,0.0001427668,0.00004733941,0.0001000011,0.00003736939,0.00003319166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001410828,0.00002441909,0.00006304643,0.00009507098,0.000009704446,0.00009058284,0.00002163226,0.0001147705,0.9980797,0.0005445314,0.00008127518,0.0008610669],"study_design_scores_gemma":[0.00001115848,0.0002204981,0.000913199,0.00002311775,0.00004175447,0.0003818788,0.00002064718,0.001239177,0.9894511,0.0004538555,0.00723602,0.000007570205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.5189409,0.02462615,0.3966169,0.001170247,0.001486104,0.0009732706,0.006942109,0.001523636,0.04772075],"genre_scores_gemma":[0.827142,0.02065849,0.1348026,0.0006725119,0.0003645674,0.001459722,0.003735335,0.0002578101,0.01090694],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.001901262,"threshold_uncertainty_score":0.006360352,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2561595298","doi":"10.1101/pdb.prot088724","title":"Synchronization and Arrest of the Budding Yeast Cell Cycle Using Chemical and Genetic Methods","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Nocodazole; Cell cycle; Cell biology; Yeast; Biology; Cell synchronization; Population; Cell cycle checkpoint; Saccharomyces cerevisiae; Genetics; Cell; Chemistry","authors":[{"name":"Adam P. Rosebrock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02532689433807448,"gpt":0.3462286119690326,"spread":0.3209017176309581,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001195052,0.0009052602,0.0008468711,0.001152586,0.00104332,0.0007966654,0.001509324,0.0005860075,0.003596671],"category_scores_gemma":[0.0007461015,0.0006117722,0.0009597546,0.0009984067,0.0008340855,0.0004455823,0.001642371,0.002315452,0.002911803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006957793,"about_ca_system_score_gemma":0.001001982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001449102,"about_ca_topic_score_gemma":0.00366217,"domain_scores_codex":[0.9976948,0.0003119615,0.0003773564,0.0004474978,0.0009928865,0.0001755302],"domain_scores_gemma":[0.9993976,0.00009710595,0.0001041519,0.0002313671,0.00009844908,0.00007131862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002027356,0.00007252368,0.000247648,0.000285109,0.00001928557,0.0001038968,0.0001083524,0.0004616032,0.982002,0.002316875,0.001255556,0.01292436],"study_design_scores_gemma":[0.00008355095,0.0002310623,0.001297702,0.00005049429,0.00002908156,0.0003169599,0.00004978499,0.002076091,0.9394703,0.0005401204,0.05580191,0.00005288447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2375417,0.01176697,0.6916194,0.001377777,0.002365579,0.008304007,0.00934913,0.004608478,0.03306688],"genre_scores_gemma":[0.3126988,0.01224685,0.6234224,0.0008410906,0.0003297729,0.009718177,0.008923345,0.001738605,0.03008095],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003596671,"threshold_uncertainty_score":0.01203203,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2312576496","doi":"10.1101/pdb.prot076471","title":"Bulk Electroporation of Retinal Ganglion Cells in Live <i>Xenopus</i> Tadpoles","year":2013,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Alliance for Research on Schizophrenia and Depression","keywords":"Xenopus; Fluorophore; Electroporation; Ganglion; Retina; Pipette; Fluorescence; Retinal; DNA; Retinal ganglion cell; Biology; Anatomy; Cell biology; Chemistry; Biophysics; Neuroscience; Biochemistry; Optics","authors":[{"name":"Edward S. Ruthazer","is_ca":false},{"name":"Anne Schohl","is_ca":false},{"name":"Neil Schwartz","is_ca":false},{"name":"Aydin Tavakoli","is_ca":false},{"name":"Marc Adélard Tremblay","is_ca":false},{"name":"Hollis T. Cline","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006690554163644584,"gpt":0.2610537292815047,"spread":0.2543631751178602,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002337787,0.0004476765,0.0003888871,0.0003470729,0.0004532488,0.0003997103,0.0005561339,0.0004176913,0.004044288],"category_scores_gemma":[0.0001117052,0.0003930941,0.0004438867,0.0002234854,0.0003612684,0.0002986336,0.0003305089,0.00128213,0.002364175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005235685,"about_ca_system_score_gemma":0.0002756355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002441753,"about_ca_topic_score_gemma":0.004629571,"domain_scores_codex":[0.9998304,0.00001353433,0.00001639151,0.00007059887,0.00003659171,0.00003240437],"domain_scores_gemma":[0.999836,0.00004903774,0.00003309546,0.00002858922,0.00002228949,0.00003096732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002161233,0.000008457966,0.00004135694,0.00003238169,0.000002817098,0.00003697597,0.00003493571,0.00003453535,0.998423,0.0001544143,0.00008847805,0.001121042],"study_design_scores_gemma":[0.00002039109,0.0001222012,0.001897381,0.00001889446,0.00001556571,0.0001608368,0.00003443884,0.0005930983,0.9917039,0.00009918134,0.00532629,0.000007789128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8499411,0.002539284,0.1121388,0.0004931899,0.0003420005,0.0009230981,0.00747136,0.003252249,0.02289896],"genre_scores_gemma":[0.7678307,0.004229507,0.1627909,0.0004739071,0.0000986516,0.001285692,0.006832839,0.001882323,0.05457546],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004044288,"threshold_uncertainty_score":0.01352954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1917449639","doi":"10.1101/pdb.top074583","title":"Isolation of Nuclei","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"14-3-3 protein interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Isolation (microbiology); Biology; Microbiology","authors":[{"name":"Arash Nabbi","is_ca":true},{"name":"Karl Riabowol","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03123642166169206,"gpt":0.3083396115701115,"spread":0.2771031899084195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001739798,0.001704784,0.001791858,0.002298357,0.002476886,0.001701742,0.002491784,0.001270829,0.01715568],"category_scores_gemma":[0.001763218,0.0009252646,0.001140302,0.00169784,0.001192488,0.00112386,0.002410277,0.004369363,0.02522241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009865236,"about_ca_system_score_gemma":0.001726586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00198423,"about_ca_topic_score_gemma":0.006674351,"domain_scores_codex":[0.997486,0.0003032689,0.0002994157,0.0008165299,0.0008011305,0.0002936453],"domain_scores_gemma":[0.9983109,0.0003014359,0.00009478824,0.0005018431,0.0005603288,0.0002307621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002709778,0.0001302078,0.000695151,0.0007613621,0.00005351659,0.0005431559,0.0003086521,0.0003225532,0.941598,0.006253898,0.01319592,0.03586663],"study_design_scores_gemma":[0.0001449358,0.0004635318,0.005086524,0.000329836,0.0001103482,0.001886214,0.0001871805,0.001873128,0.5321324,0.002715656,0.454975,0.00009517946],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.06168358,0.01856938,0.7526827,0.002498735,0.005381969,0.01495161,0.03304357,0.008447124,0.1027413],"genre_scores_gemma":[0.1205579,0.01714772,0.6586269,0.002469634,0.0008665047,0.008638747,0.08459903,0.003650021,0.1034436],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01715568,"threshold_uncertainty_score":0.05739146,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1844424633","doi":"10.1101/pdb.prot083741","title":"Isolation of Pure Nuclei Using a Sucrose Method","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Tissue Engineering and Regenerative Medicine","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Isotonic; Homogenization (climate); Centrifugation; Sucrose; Chemistry; Isolation (microbiology); Chromatography; Biochemistry; Biology; Bioinformatics; Medicine","authors":[{"name":"Arash Nabbi","is_ca":true},{"name":"Karl Riabowol","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07168447194840516,"gpt":0.3686380058529712,"spread":0.2969535339045661,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001126028,0.001188318,0.0008195439,0.001812689,0.001284779,0.0007583603,0.001233867,0.0007649164,0.009264143],"category_scores_gemma":[0.0007092404,0.0007152757,0.0006923758,0.0008195709,0.0006402371,0.0008646828,0.001193216,0.001934223,0.01332377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005284265,"about_ca_system_score_gemma":0.0009802955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001321112,"about_ca_topic_score_gemma":0.004579654,"domain_scores_codex":[0.9985996,0.0001920589,0.0001944508,0.0003364508,0.0005441205,0.0001333529],"domain_scores_gemma":[0.9994445,0.0000985905,0.00003535755,0.0001563876,0.0002099699,0.00005512775],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005439284,0.00003232642,0.0001273183,0.0002750824,0.00001802037,0.0001259516,0.00009744322,0.0001087221,0.9831789,0.001417436,0.002045085,0.01251927],"study_design_scores_gemma":[0.00004774358,0.0003281232,0.002189256,0.0001614858,0.00009635018,0.001560285,0.00007542575,0.001514282,0.7621667,0.001074095,0.2306889,0.00009737573],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.06998549,0.01423949,0.8467708,0.001125307,0.002619713,0.005531766,0.006684901,0.005459902,0.04758253],"genre_scores_gemma":[0.1170167,0.01758355,0.7744251,0.001035374,0.0003951306,0.005274214,0.02494102,0.001722688,0.05760618],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.009264143,"threshold_uncertainty_score":0.03099161,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2751830806","doi":"10.1101/pdb.prot089086","title":"Metabolite Extraction from <i>Saccharomyces cerevisiae</i> for Liquid Chromatography–Mass Spectrometry","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Metabolite; Chromatography; Chemistry; Mass spectrometry; Extraction (chemistry); Saccharomyces cerevisiae; Liquid chromatography–mass spectrometry; Metabolomics; Biochemistry; Yeast","authors":[{"name":"Adam P. Rosebrock","is_ca":true},{"name":"Amy A. Caudy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01425510677223372,"gpt":0.2834946466785225,"spread":0.2692395399062888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003265977,0.001446406,0.000726383,0.001074614,0.0005532652,0.0005647078,0.0005079621,0.0004137917,0.004111341],"category_scores_gemma":[0.0004876788,0.0005006748,0.0005851491,0.001172118,0.0002213932,0.0003501821,0.0003808663,0.001235747,0.004566933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004088764,"about_ca_system_score_gemma":0.0006038101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00156077,"about_ca_topic_score_gemma":0.003836786,"domain_scores_codex":[0.9996743,0.00003132854,0.00003994834,0.0001108583,0.00009959876,0.00004397461],"domain_scores_gemma":[0.9997924,0.00002947358,0.0000223734,0.00005187531,0.00007843941,0.00002546698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005764297,0.00001990863,0.0001321927,0.00006307754,0.00001074198,0.0000584775,0.000008663693,0.00006303371,0.9964641,0.00007634283,0.0004055686,0.002640423],"study_design_scores_gemma":[0.00002535198,0.0001183213,0.002265573,0.00002722896,0.00002672855,0.0001604153,0.0000195732,0.0007316428,0.9782028,0.0001603728,0.01824236,0.00001976972],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.4935816,0.01306221,0.3443978,0.0009813863,0.0009616917,0.004126952,0.09532546,0.01316389,0.03439914],"genre_scores_gemma":[0.444302,0.013441,0.3347492,0.001298823,0.0002516542,0.002914852,0.1682161,0.00371194,0.03111458],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004111341,"threshold_uncertainty_score":0.01375383,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160998528","doi":"10.1101/pdb.prot072801","title":"Loading Fluorescent Ca<sup>2+</sup> Indicators into Living Cells","year":2013,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Fluorescence; Chemistry; Membrane; Pinocytosis; Carboxylic acid; Pipette; Microinjection; Hydrolysis; Biophysics; Intracellular; Cell; Biochemistry; Endocytosis; Cell biology; Biology","authors":[{"name":"Martin D. Bootman","is_ca":false},{"name":"Katja Rietdorf","is_ca":false},{"name":"Tony Collins","is_ca":true},{"name":"Simon Walker","is_ca":false},{"name":"Michael J. Sanderson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00844166985679403,"gpt":0.2423057089647464,"spread":0.2338640391079523,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007012816,0.0006615449,0.0007917499,0.0003825092,0.0005094341,0.0008658799,0.000856404,0.0009224556,0.006583737],"category_scores_gemma":[0.0006159848,0.0003660247,0.0005674333,0.0005999154,0.0005595107,0.0009498558,0.0007722243,0.001140353,0.005424699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005499696,"about_ca_system_score_gemma":0.0004543735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004391854,"about_ca_topic_score_gemma":0.001055524,"domain_scores_codex":[0.9994015,0.00005769854,0.00008269263,0.0001417475,0.0002133608,0.000103045],"domain_scores_gemma":[0.9995489,0.000166908,0.00004425017,0.0001198214,0.00006903509,0.00005121697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008049443,0.00002495882,0.00008308468,0.0001133452,0.000007027034,0.00007715212,0.00005406403,0.000097216,0.9912918,0.0006865439,0.001153536,0.006330773],"study_design_scores_gemma":[0.00002036356,0.00009379168,0.0003356274,0.00001187911,0.00001278887,0.00007669925,0.00001430079,0.0005981047,0.9801663,0.000179279,0.01848137,0.000009645481],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.570818,0.01041733,0.3246504,0.003379548,0.002886915,0.002887738,0.008927392,0.01006799,0.0659647],"genre_scores_gemma":[0.5280806,0.01153186,0.3849304,0.002118381,0.0005776444,0.004152714,0.01065139,0.002460493,0.05549654],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.006583737,"threshold_uncertainty_score":0.02202481,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1816124636","doi":"10.1101/pdb.prot087486","title":"Two-Photon Imaging of Neuronal Structural Plasticity in Mice during and after Ischemia","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Anesthesia and Neurotoxicity Research","field":"Neuroscience","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Ischemia; In vivo; Depolarization; Genetically modified mouse; Neuroscience; Preclinical imaging; Two-photon excitation microscopy; Transgene; Medicine; Biology; Fluorescence; Cardiology; Internal medicine; Physics; Optics; Biochemistry","authors":[{"name":"Timothy H. Murphy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03387020519299101,"gpt":0.3103578542231177,"spread":0.2764876490301267,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004413949,0.0004822125,0.0005323089,0.001050221,0.0004057999,0.0005013382,0.0006964082,0.001077747,0.001277916],"category_scores_gemma":[0.0002503431,0.0004628806,0.0004801649,0.0004019341,0.0006024176,0.0006417072,0.0004110364,0.002545115,0.0003849778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008296773,"about_ca_system_score_gemma":0.0004273315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001362207,"about_ca_topic_score_gemma":0.002838593,"domain_scores_codex":[0.9997417,0.00002597551,0.00002075176,0.00007872494,0.00006015214,0.00007257989],"domain_scores_gemma":[0.9996338,0.00006689579,0.0001100693,0.00004250684,0.00004954779,0.00009707343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001544456,0.00005952211,0.000176591,0.00002560783,0.000007145157,0.00009475175,0.00003559492,0.0001673922,0.9975574,0.0003973517,0.000112001,0.001212124],"study_design_scores_gemma":[0.0000792987,0.0005737765,0.008174408,0.00002638262,0.00003807857,0.0007346952,0.00006971182,0.003024928,0.9843121,0.000602825,0.002337595,0.00002602909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9564856,0.001289135,0.03379616,0.0006582337,0.00009792434,0.0001294496,0.002109612,0.0006755842,0.004758324],"genre_scores_gemma":[0.9378896,0.002772341,0.04008478,0.000407744,0.0000389564,0.0005354914,0.001979635,0.0003621734,0.01592917],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001362207,"threshold_uncertainty_score":0.006019771,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4394738220","doi":"10.1101/pdb.top107820","title":"Synaptic Electrophysiology of the<i>Drosophila</i>Neuromuscular Junction","year":2024,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Engineers Without Borders Canada; University of Toronto","funders":"","keywords":"Neurotransmission; Neuromuscular junction; Neuroscience; Postsynaptic potential; Biology; Synaptic vesicle; Neuromuscular transmission; Electrophysiology; Synaptic cleft; Acetylcholine receptor; Synapse; Active zone; Neurotransmitter; Receptor; Central nervous system; Vesicle; Biochemistry","authors":[{"name":"Bing Zhang","is_ca":false},{"name":"Bryan A. Stewart","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02843679657840428,"gpt":0.2946299681956257,"spread":0.2661931716172214,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004695419,0.0003976105,0.0002176868,0.0002910031,0.0004858208,0.0003865937,0.0007075506,0.000326945,0.002692928],"category_scores_gemma":[0.0002935888,0.000185488,0.0002197536,0.0002476856,0.0004413266,0.0003851024,0.0004061449,0.0008554709,0.001351785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003375885,"about_ca_system_score_gemma":0.0001990884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007731882,"about_ca_topic_score_gemma":0.001403051,"domain_scores_codex":[0.9997464,0.00005036137,0.00003498412,0.00006338214,0.00008230027,0.00002251381],"domain_scores_gemma":[0.9998465,0.00004812225,0.00002021459,0.00003722942,0.00003524186,0.00001267591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003719886,0.00001296766,0.0001917398,0.00009465756,0.000004641867,0.000100948,0.00005377037,0.0001383304,0.9925168,0.001351181,0.0005766932,0.004921138],"study_design_scores_gemma":[0.00003093787,0.0002956898,0.007471342,0.00008290394,0.00002118752,0.0007086769,0.00007633951,0.003727872,0.9556968,0.001232262,0.03062926,0.00002672108],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.520692,0.007978686,0.4051527,0.001136902,0.0006928438,0.001282301,0.007674422,0.003081152,0.05230897],"genre_scores_gemma":[0.6116913,0.006644219,0.3683465,0.0006129996,0.0001251781,0.001405137,0.002165636,0.0004218319,0.008587081],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002692928,"threshold_uncertainty_score":0.009008765,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1949799299","doi":"10.1101/pdb.prot086280","title":"Detection of p62 on Paraffin Sections by Immunohistochemistry","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Tata Trusts; Lady Tata Memorial Trust","keywords":"Sequestosome 1; Autophagy; Autophagosome; Western blot; Immunohistochemistry; Signal transducing adaptor protein; Cell biology; Protein aggregation; Blot; Chemistry; Biology; Biochemistry; Gene; Phosphorylation; Apoptosis; Immunology","authors":[{"name":"Alexander Watson","is_ca":false},{"name":"Elizabeth J. Soilleux","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0261393416160824,"gpt":0.3184564122886926,"spread":0.2923170706726102,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002236627,0.00131223,0.0004181359,0.002991954,0.0008409923,0.000589652,0.001061128,0.00101271,0.01778621],"category_scores_gemma":[0.0009793988,0.00127959,0.000681781,0.001003349,0.0008651501,0.001045268,0.0006367414,0.001957829,0.006323481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003973034,"about_ca_system_score_gemma":0.000621897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006389061,"about_ca_topic_score_gemma":0.002679121,"domain_scores_codex":[0.9988882,0.0002027309,0.0001891407,0.0002562055,0.0003182295,0.0001456291],"domain_scores_gemma":[0.99884,0.0003016123,0.0001144733,0.0003282255,0.0003281191,0.00008757484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001021241,0.00007763664,0.0002664603,0.0003810267,0.00001800839,0.000406882,0.00008913938,0.0001242483,0.9873346,0.00175119,0.0009397297,0.008508933],"study_design_scores_gemma":[0.0001704965,0.0009517404,0.01166032,0.0003897373,0.0001118361,0.004688626,0.000244495,0.006641754,0.8757312,0.004077704,0.09526726,0.00006491212],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1905518,0.01195829,0.7191355,0.001262669,0.001751822,0.004634408,0.004948391,0.007616804,0.05814025],"genre_scores_gemma":[0.1133175,0.01202253,0.8278227,0.0005402288,0.0003354466,0.00522381,0.005858598,0.001128648,0.03375057],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01778621,"threshold_uncertainty_score":0.05950075,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2321863683","doi":"10.1101/pdb.top086652","title":"Synthetic Genetic Arrays: Automation of Yeast Genetics","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; University of Toronto","funders":"","keywords":"Biology; Computational biology; Genome; Schizosaccharomyces pombe; Genetics; Saccharomyces cerevisiae; Genetic screen; Synthetic lethality; Model organism; Gene; Phenotype; Mutant","authors":[{"name":"Elena Kuzmin","is_ca":true},{"name":"Michael Costanzo","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01963750717473389,"gpt":0.2856021384877231,"spread":0.2659646313129892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002598998,0.001235711,0.001255511,0.001397547,0.0005859816,0.001567389,0.002155274,0.0007719451,0.005743846],"category_scores_gemma":[0.002635437,0.001640288,0.0009631595,0.001201276,0.0007970192,0.0009098324,0.00164916,0.00261847,0.008239944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005967427,"about_ca_system_score_gemma":0.0006501148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007736787,"about_ca_topic_score_gemma":0.00130004,"domain_scores_codex":[0.9972128,0.0006313605,0.0002666842,0.0005193974,0.001235371,0.000134383],"domain_scores_gemma":[0.9987106,0.000387477,0.0001343184,0.0004809182,0.0001953839,0.00009126672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004992859,0.0001388882,0.0009941978,0.0007437011,0.0001072593,0.0002789314,0.0002660566,0.006882635,0.7788509,0.02221568,0.02311684,0.1659057],"study_design_scores_gemma":[0.000172171,0.0002600235,0.001452432,0.0001424615,0.00006032891,0.0009007379,0.00005821872,0.03503077,0.6738051,0.01694297,0.2709975,0.0001773691],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01096751,0.002270806,0.946771,0.0004193522,0.0004468164,0.0005372625,0.00494455,0.02534325,0.008299419],"genre_scores_gemma":[0.05241079,0.002864672,0.9242674,0.0003048088,0.0001026265,0.001997404,0.008045703,0.002812749,0.007193928],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.005743846,"threshold_uncertainty_score":0.01921505,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2040000018","doi":"10.1101/pdb.prot5250","title":"In Situ Hybridization on Ant Ovaries and Embryos","year":2009,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"In situ hybridization; Biology; Digoxigenin; Embryo; Blastoderm; RNA; Gene; Gene expression; Oogenesis; Cell biology; Molecular biology; Oocyte; Genetics; Embryogenesis","authors":[{"name":"Abderrahman Khila","is_ca":true},{"name":"Ehab Abouheif","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0119821448129091,"gpt":0.2747778394169241,"spread":0.262795694604015,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003303303,0.000652094,0.0005029982,0.0006202597,0.001108894,0.0005497555,0.0007878679,0.0005876455,0.007539651],"category_scores_gemma":[0.0002216919,0.0006954813,0.0005589171,0.0003946834,0.0004421043,0.0003252327,0.0004280074,0.001460853,0.003695571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004305737,"about_ca_system_score_gemma":0.0004072698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001333854,"about_ca_topic_score_gemma":0.004850459,"domain_scores_codex":[0.9996145,0.00005600679,0.00003559553,0.0001443861,0.00008454749,0.00006492368],"domain_scores_gemma":[0.9998042,0.00005596723,0.0000297864,0.0000439353,0.00004092768,0.00002527568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000353717,0.000009256857,0.00002795422,0.00007307391,0.000002989192,0.00008135736,0.00004184612,0.00003710729,0.9972907,0.0003343384,0.0001268413,0.00193914],"study_design_scores_gemma":[0.00003934672,0.0001311609,0.002695274,0.00005775717,0.00003316351,0.0009248711,0.00009283214,0.001370698,0.951242,0.0004113285,0.04298724,0.00001440375],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.3789471,0.004895444,0.5254145,0.001169439,0.001179713,0.002488298,0.01040636,0.003636671,0.07186237],"genre_scores_gemma":[0.3757228,0.008827534,0.4960356,0.0005765107,0.0002489863,0.002221185,0.01670787,0.002132411,0.09752708],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.007539651,"threshold_uncertainty_score":0.02522266,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970981101","doi":"10.1101/pdb.prot072827","title":"Converting Fluorescence Data into Ca<sup>2+</sup> Concentration","year":2013,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Fluorescence; SIGNAL (programming language); Yield (engineering); Amplitude; Chemistry; Analytical Chemistry (journal); Kinetic energy; Linear relationship; Biological system; Physics; Optics; Statistics; Mathematics; Environmental chemistry; Computer science; Thermodynamics; Biology","authors":[{"name":"Martin D. Bootman","is_ca":false},{"name":"Katja Rietdorf","is_ca":false},{"name":"Tony Collins","is_ca":true},{"name":"Simon Walker","is_ca":false},{"name":"Michael J. Sanderson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02220967683694217,"gpt":0.2788123575921344,"spread":0.2566026807551922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001650714,0.001982611,0.001235567,0.004182133,0.0006542101,0.001741452,0.001773015,0.001405085,0.03239275],"category_scores_gemma":[0.004817188,0.0008816642,0.001071983,0.006892915,0.0008142875,0.002275476,0.001065268,0.003674499,0.01799975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001490193,"about_ca_system_score_gemma":0.0008052951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001423893,"about_ca_topic_score_gemma":0.0022592,"domain_scores_codex":[0.9982098,0.0001878856,0.0001751306,0.0004038191,0.0008786788,0.0001446956],"domain_scores_gemma":[0.9968473,0.001026574,0.0003083199,0.0004964506,0.001220957,0.0001002571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001283651,0.0004281102,0.009473621,0.002562881,0.0002708997,0.001048509,0.001064634,0.003551913,0.6960806,0.009639938,0.0431363,0.2314589],"study_design_scores_gemma":[0.00005810233,0.0003393256,0.01717266,0.0001691814,0.0001750816,0.001130358,0.0006180321,0.01923592,0.8717472,0.009879483,0.07927725,0.000197374],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1561648,0.003390177,0.6639013,0.002937566,0.003289541,0.0009950121,0.06605046,0.04123096,0.06204013],"genre_scores_gemma":[0.2361965,0.009201537,0.6460953,0.002393548,0.0004558945,0.004157264,0.04022928,0.009472742,0.05179799],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03239275,"threshold_uncertainty_score":0.1083645,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2252848846","doi":"10.1101/pdb.top069948","title":"Methods to Study Metastasis in Genetically Modified Mice","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"Institut de Recherche Clinique De Montréal","keywords":"Xenotransplantation; Metastasis; Transgene; Genetically modified organism; Genetically modified mouse; Biology; Cancer; Cancer research; Mammary tumor; Gene knockout; Gene; Computational biology; Breast cancer; Medicine; Transplantation; Genetics; Internal medicine","authors":[{"name":"Farhia Kabeer","is_ca":true},{"name":"Levi J. Beverly","is_ca":false},{"name":"Guillaume Darrasse-Jèze","is_ca":false},{"name":"Katrina Podsypanina","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06685305413315507,"gpt":0.3998574596950572,"spread":0.3330044055619021,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003023843,0.00178245,0.0008662307,0.00340483,0.001424335,0.0009275896,0.002722786,0.001983379,0.01512464],"category_scores_gemma":[0.001190074,0.001343895,0.001352999,0.001122116,0.001236366,0.0008931903,0.001502847,0.005019275,0.007376306],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009535435,"about_ca_system_score_gemma":0.001171366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008302112,"about_ca_topic_score_gemma":0.002042476,"domain_scores_codex":[0.9979588,0.000459555,0.0002514847,0.0004240648,0.0006859513,0.0002201196],"domain_scores_gemma":[0.9988958,0.0002611986,0.0001941145,0.0003461953,0.0001379948,0.0001646922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002937738,0.0004984703,0.0003533549,0.0006900819,0.00007196327,0.0002909125,0.0002613367,0.0006366965,0.9394522,0.02289898,0.005043473,0.0295088],"study_design_scores_gemma":[0.0004560658,0.001842629,0.002485557,0.000381033,0.0001837555,0.002530475,0.00009963309,0.00283674,0.6210217,0.007172272,0.360848,0.0001420436],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03486414,0.009962161,0.9056118,0.001927833,0.001656086,0.01104394,0.006677829,0.00463628,0.02361992],"genre_scores_gemma":[0.09163102,0.01656404,0.7769727,0.001833518,0.0003826334,0.04314377,0.008880624,0.001621967,0.05896977],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01512464,"threshold_uncertainty_score":0.05059701,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2513796423","doi":"10.1101/pdb.top080945","title":"Functional Genomics Using the <i>Saccharomyces cerevisiae</i> Yeast Deletion Collections","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute for Health and Care Research","keywords":"Genetics; Saccharomyces cerevisiae; Genome; Biology; Gene; Computational biology; Functional genomics; Open reading frame; Homologous recombination; Genomics; Yeast","authors":[{"name":"Corey Nislow","is_ca":true},{"name":"Lai Hong Wong","is_ca":true},{"name":"Amy Huei‐Yi Lee","is_ca":true},{"name":"Guri Giaever","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03567933422396503,"gpt":0.2860715855538821,"spread":0.2503922513299171,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001399063,0.001017272,0.0007970048,0.001909562,0.0008909854,0.0009821961,0.001233288,0.0003158986,0.001709969],"category_scores_gemma":[0.0008409282,0.000667379,0.001025387,0.002076438,0.0004708074,0.0003611997,0.001063126,0.001291052,0.002085072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007260992,"about_ca_system_score_gemma":0.00124706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006583984,"about_ca_topic_score_gemma":0.008793307,"domain_scores_codex":[0.9992588,0.000162356,0.0001238279,0.0001349328,0.0002738623,0.00004617783],"domain_scores_gemma":[0.9993508,0.00009938837,0.0001152435,0.0001973304,0.0001480134,0.0000892942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003728323,0.0000717685,0.001290731,0.0002963978,0.00008062534,0.0002188598,0.000191098,0.001415388,0.9678125,0.002013223,0.00396751,0.0222689],"study_design_scores_gemma":[0.0002021259,0.0004303453,0.01404022,0.000133473,0.000334891,0.001439235,0.000167934,0.004804942,0.826502,0.001132345,0.1506498,0.0001627523],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3596251,0.003705214,0.4591891,0.001039284,0.0003505054,0.003955828,0.1408674,0.01105427,0.02021307],"genre_scores_gemma":[0.3193581,0.009573306,0.4261644,0.0007447163,0.0001059881,0.003550638,0.2270559,0.003398187,0.01004872],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006583984,"threshold_uncertainty_score":0.01309133,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2053741581","doi":"10.1101/pdb.top077156","title":"In Vivo Time-Lapse Imaging of Neuronal Development in <i>Xenopus</i>","year":2013,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Alliance for Research on Schizophrenia and Depression","keywords":"Electroporation; Xenopus; Fluorescence; In vivo; Fluorophore; Tadpole (physics); Biophysics; Preclinical imaging; Iontophoresis; DNA; Cell biology; Chemistry; Biology; Neuroscience; Biochemistry; Optics; Genetics; Physics","authors":[{"name":"Edward S. Ruthazer","is_ca":false},{"name":"Anne Schohl","is_ca":false},{"name":"Neil Schwartz","is_ca":false},{"name":"Aydin Tavakoli","is_ca":false},{"name":"Marc Adélard Tremblay","is_ca":false},{"name":"Hollis T. Cline","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006762764910047332,"gpt":0.2655745295403765,"spread":0.2588117646303291,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001012644,0.0002395217,0.0001663681,0.0002128878,0.0002691579,0.0003225672,0.0003441341,0.0003024675,0.00251105],"category_scores_gemma":[0.00007614313,0.0001879235,0.0002008034,0.0001599081,0.0001885702,0.0002862427,0.000171063,0.000654005,0.0009410492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003306832,"about_ca_system_score_gemma":0.0002171875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001969803,"about_ca_topic_score_gemma":0.003429989,"domain_scores_codex":[0.9999559,0.000004896896,0.000003582868,0.00001544938,0.00001109989,0.000009102899],"domain_scores_gemma":[0.9999539,0.00001117648,0.00001385734,0.000005020979,0.00000700522,0.000009105736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001629281,0.00000511767,0.00005115155,0.00002216465,0.000001455575,0.00003730846,0.00001247898,0.00006663853,0.9979181,0.0001803642,0.0001141541,0.001574843],"study_design_scores_gemma":[0.00001129796,0.00007973619,0.002988427,0.00001650053,0.00001141351,0.0004968341,0.00003757953,0.001808941,0.9860126,0.000157147,0.008372147,0.000007422175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7569451,0.004773838,0.2023865,0.001002418,0.0002437086,0.0002298776,0.003777944,0.001847945,0.02879271],"genre_scores_gemma":[0.7427362,0.007806482,0.217811,0.0003804912,0.00009453025,0.000474448,0.002323386,0.0006500307,0.02772336],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.00251105,"threshold_uncertainty_score":0.008400321,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065482670","doi":"10.1101/pdb.prot5149","title":"Long-Term Frozen Storage of Choanoflagellate Cultures","year":2009,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Liquid nitrogen; Biology; Nitrogen; Chemistry","authors":[{"name":"Nicole King","is_ca":true},{"name":"Susan L. Young","is_ca":false},{"name":"Monika Abedin","is_ca":false},{"name":"Martin Carr","is_ca":false},{"name":"B. S. C. Leadbeater","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01447580161188019,"gpt":0.2776937900436203,"spread":0.2632179884317401,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000789489,0.0006570281,0.0006388589,0.0004996762,0.0007891889,0.001122373,0.001627375,0.0005466166,0.004109065],"category_scores_gemma":[0.0007013107,0.0002052829,0.0004670548,0.0006957107,0.0004282323,0.0007461449,0.00113526,0.001273934,0.00246837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005229827,"about_ca_system_score_gemma":0.0005760671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002326381,"about_ca_topic_score_gemma":0.004161054,"domain_scores_codex":[0.9994448,0.00006634613,0.0000885149,0.0001630137,0.0001483313,0.00008898404],"domain_scores_gemma":[0.9991512,0.00008789772,0.00006954753,0.0002428471,0.0003877944,0.00006061932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003873465,0.00009581519,0.001752083,0.0001959475,0.00003049175,0.0002403944,0.0002847484,0.0003512956,0.9849563,0.0005703164,0.001116054,0.01001923],"study_design_scores_gemma":[0.00003876332,0.0008472132,0.0140768,0.0003127625,0.0002208155,0.0004924544,0.0003849377,0.002205573,0.9395539,0.0007371446,0.0410516,0.00007802244],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.8249283,0.01120696,0.09219376,0.001136657,0.001388173,0.002107767,0.02981859,0.001259121,0.03596082],"genre_scores_gemma":[0.7477115,0.006372805,0.1364206,0.0008324481,0.0003044264,0.003863113,0.06702845,0.0006652012,0.03680157],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.004109065,"threshold_uncertainty_score":0.01374614,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2345350673","doi":"10.1101/pdb.top077560","title":"Membrane Yeast Two-Hybrid (MYTH) Mapping of Full-Length Membrane Protein Interactions","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Yeast; Saccharomyces cerevisiae; Computational biology; Tandem affinity purification; Two-hybrid screening; Membrane protein; Function (biology); Proteomics; Biology; Protein–protein interaction; Ubiquitin; Membrane; Biochemistry; Chemistry; Cell biology; Gene; Affinity chromatography; Enzyme","authors":[{"name":"Jamie Snider","is_ca":true},{"name":"Igor Štagljar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02328036157957974,"gpt":0.2940091228574109,"spread":0.2707287612778312,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004376197,0.0007195919,0.0006141069,0.0009213357,0.0004797491,0.0007304337,0.0009275724,0.0006934647,0.002989853],"category_scores_gemma":[0.0003586604,0.0003939834,0.0007313023,0.0008200352,0.0003243907,0.0005719246,0.001093694,0.001410654,0.002630638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005026591,"about_ca_system_score_gemma":0.0002461601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006072524,"about_ca_topic_score_gemma":0.001456856,"domain_scores_codex":[0.9995831,0.00006889065,0.00003917276,0.0001172847,0.0001368733,0.00005465688],"domain_scores_gemma":[0.9997295,0.00008222074,0.00005225685,0.00005832748,0.00003760985,0.00004011355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003515668,0.000012831,0.0001982457,0.00007120726,0.00001161199,0.00005601539,0.00002110605,0.00006509529,0.9958426,0.0004240765,0.0002675152,0.002994512],"study_design_scores_gemma":[0.00001069638,0.0000844573,0.003372918,0.00001161261,0.00002008393,0.0005571913,0.00003203241,0.001471258,0.9831749,0.0002691247,0.01097638,0.00001943748],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4455652,0.007428073,0.5170235,0.0008648357,0.0002902661,0.000303182,0.01257064,0.004058308,0.0118959],"genre_scores_gemma":[0.5628452,0.008485362,0.38767,0.0004861387,0.00006527991,0.0006732717,0.01788135,0.0007565156,0.02113681],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002989853,"threshold_uncertainty_score":0.01000208,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2546591165","doi":"10.1101/pdb.top083543","title":"Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein–Protein Interactions in Living Cells","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Université Laval; PROTEO; Université de Montréal","funders":"","keywords":"Complementation; Fragment (logic); Protein-fragment complementation assay; Scale (ratio); Protein–protein interaction; Computational biology; Chemistry; Cell biology; Biology; Computer science; Biochemistry; Physics; Gene; Algorithm; Phenotype","authors":[{"name":"Stephen W. Michnick","is_ca":true},{"name":"Christian R. Landry","is_ca":true},{"name":"Emmanuel D. Levy","is_ca":false},{"name":"Guillaume Diss","is_ca":true},{"name":"Po Hien Ear","is_ca":true},{"name":"Jacqueline Kowarzyk","is_ca":true},{"name":"Mohan Malleshaiah","is_ca":true},{"name":"Vincent Messier","is_ca":true},{"name":"Emmanuelle Tchekanda","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0224338761643615,"gpt":0.3179813539360037,"spread":0.2955474777716423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001783235,0.001817391,0.001041087,0.002342455,0.0008085565,0.0007356591,0.001777456,0.0009481654,0.003343833],"category_scores_gemma":[0.001283843,0.0006958141,0.001137411,0.001423012,0.0008804833,0.0008899817,0.001313743,0.003037178,0.002606946],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001034206,"about_ca_system_score_gemma":0.0007748928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001731903,"about_ca_topic_score_gemma":0.002916129,"domain_scores_codex":[0.9985869,0.0004080881,0.0001161836,0.000249153,0.0005294582,0.0001102307],"domain_scores_gemma":[0.9987782,0.0005130241,0.0001590202,0.0002481518,0.0001686548,0.000132827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005761067,0.00007362047,0.0001491003,0.0001520569,0.00001858267,0.00005080358,0.0000322211,0.0002097208,0.9930198,0.001353662,0.0005214309,0.004361304],"study_design_scores_gemma":[0.00002282347,0.0001189055,0.0007007116,0.00001397368,0.00003011512,0.0003539602,0.00001818308,0.00346296,0.9865419,0.000518724,0.008191809,0.00002599567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.07085203,0.002913463,0.912115,0.0003624198,0.0001967545,0.001219915,0.003531677,0.003946557,0.004862169],"genre_scores_gemma":[0.1920778,0.004555875,0.7852551,0.0002293791,0.00006157227,0.00240336,0.007071006,0.0005798299,0.007766117],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003343833,"threshold_uncertainty_score":0.01118618,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2752006743","doi":"10.1101/pdb.top083576","title":"Metabolomics in Yeast","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Yeast; Metabolomics; Budding yeast; Computational biology; Metabolic network; Biology; Function (biology); Saccharomyces cerevisiae; Model organism; Systems biology; Regulator; Cell metabolism; Nutrient sensing; Cell biology; Cell; Bioinformatics; Genetics; Gene; Signal transduction","authors":[{"name":"Amy A. Caudy","is_ca":true},{"name":"Michael Mülleder","is_ca":false},{"name":"Markus Ralser","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01543665358279448,"gpt":0.2739926843280422,"spread":0.2585560307452477,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005912895,0.0008481996,0.0006761292,0.001214199,0.0004946959,0.001017202,0.0007698107,0.0008600107,0.001601612],"category_scores_gemma":[0.0005283469,0.0004215966,0.0006113776,0.001696839,0.0004427242,0.0008919197,0.00117295,0.00193318,0.003280628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008226564,"about_ca_system_score_gemma":0.0005499746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002338341,"about_ca_topic_score_gemma":0.002322282,"domain_scores_codex":[0.9996328,0.00009583878,0.0000306588,0.0001025464,0.000112882,0.00002527091],"domain_scores_gemma":[0.9999039,0.00002496445,0.00001013939,0.00001531596,0.00003008306,0.00001562257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00016806,0.0000593112,0.0005004438,0.002103355,0.00008339655,0.0005443164,0.000237477,0.003637146,0.7590116,0.05159865,0.02023583,0.1618205],"study_design_scores_gemma":[0.00004225027,0.0002073053,0.002643276,0.0004279389,0.00005199207,0.001222556,0.0001228534,0.01133605,0.2847177,0.03670533,0.6623774,0.0001454067],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02733999,0.1750337,0.7375213,0.005228522,0.003202963,0.0005781871,0.01492873,0.008529757,0.02763678],"genre_scores_gemma":[0.08614407,0.1719469,0.7026401,0.002130533,0.000989199,0.001277295,0.01242553,0.001033228,0.02141321],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002338341,"threshold_uncertainty_score":0.005968869,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995191891","doi":"10.1101/pdb.prot080358","title":"Genetic Manipulation of Autophagy in the <i>Drosophila</i> Ovary","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Germline; Biology; Gene knockdown; Mutant; Autophagy; Somatic cell; Gene; Genetics; Drosophila (subgenus); RNA interference; Drosophila melanogaster; Germline mutation; Genetic screen; Genetic analysis; Mutation; Cell biology; RNA","authors":[{"name":"Lindsay DeVorkin","is_ca":true},{"name":"Sharon M. Gorski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01263124887878304,"gpt":0.2912364863026034,"spread":0.2786052374238204,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002107492,0.0004117117,0.0002431403,0.0004298325,0.0004939293,0.0003906152,0.0005482148,0.0003401731,0.002014371],"category_scores_gemma":[0.0001063911,0.0003273642,0.0004129642,0.0002061672,0.0004909061,0.0002752652,0.0005383224,0.0009470084,0.001075889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005698642,"about_ca_system_score_gemma":0.0004805104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001588332,"about_ca_topic_score_gemma":0.005382938,"domain_scores_codex":[0.9997805,0.00002186216,0.00003082729,0.00006213747,0.00007227297,0.00003245787],"domain_scores_gemma":[0.9997858,0.00003124422,0.00008877635,0.00003547678,0.0000175453,0.00004112232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009682145,0.000004942897,0.00006591285,0.00001901346,0.000002587633,0.00003259343,0.000008204123,0.00002163945,0.9989268,0.0002010906,0.00005804464,0.0006493847],"study_design_scores_gemma":[0.0000119679,0.00003595355,0.002210152,0.000009542608,0.00001146846,0.0002644442,0.00002123247,0.0002695506,0.9918891,0.00006081653,0.005209348,0.000006502159],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9275699,0.001507632,0.05114875,0.0006601245,0.0001936977,0.0003009054,0.004722208,0.001405232,0.01249153],"genre_scores_gemma":[0.9323305,0.001907871,0.04473883,0.0003713036,0.00003984659,0.0002862216,0.00255707,0.0009239706,0.01684427],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002014371,"threshold_uncertainty_score":0.006738722,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2564652768","doi":"10.1101/pdb.prot088732","title":"Synchronization of Budding Yeast by Centrifugal Elutriation","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Elutriation; Cell cycle; Population; Cell; Synchronization (alternating current); Asynchronous communication; Biology; Cell biology; Chemistry; Chromatography; Biological system; Mathematics; Computer science; Genetics; Medicine","authors":[{"name":"Adam P. Rosebrock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.016535479321542,"gpt":0.3050811701086878,"spread":0.2885456907871458,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007696786,0.0008125536,0.0011277,0.0007071418,0.0006939926,0.0006903056,0.001600309,0.0003557892,0.002848169],"category_scores_gemma":[0.0005314719,0.0004307638,0.0005669924,0.0008745015,0.000500744,0.0002753156,0.001632159,0.001782963,0.002760122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007999159,"about_ca_system_score_gemma":0.0005656196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00243772,"about_ca_topic_score_gemma":0.004636759,"domain_scores_codex":[0.9985159,0.0002271618,0.0001882138,0.0004074826,0.0005056514,0.0001556305],"domain_scores_gemma":[0.9996145,0.00007424267,0.0000497167,0.000138093,0.0000661214,0.00005734305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003401834,0.00009670691,0.0005021638,0.0002018382,0.000021383,0.00009431357,0.000173781,0.0005527078,0.9852857,0.001483813,0.001772422,0.009475078],"study_design_scores_gemma":[0.0001005797,0.0002741252,0.005015256,0.00003700563,0.00002836284,0.000180239,0.00005106757,0.006390782,0.9454399,0.0004725887,0.04195579,0.00005432477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5656348,0.009744124,0.3584654,0.0009291035,0.00182412,0.005469564,0.01840316,0.006289996,0.03323967],"genre_scores_gemma":[0.6358359,0.005930272,0.3001042,0.0006977629,0.0002125014,0.006065759,0.01586622,0.002203639,0.03308365],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002848169,"threshold_uncertainty_score":0.0095281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2547216470","doi":"10.1101/pdb.prot090027","title":"The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein–Protein Interactions","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Université Laval; PROTEO; Université de Montréal","funders":"","keywords":"Dihydrofolate reductase; Protein-fragment complementation assay; Complementation; Saccharomyces cerevisiae; Molecular biology; Biology; Biochemistry; Yeast; Chemistry; Enzyme; Gene; Mutant","authors":[{"name":"Stephen W. Michnick","is_ca":true},{"name":"Emmanuel D. Levy","is_ca":false},{"name":"Christian R. Landry","is_ca":true},{"name":"Jacqueline Kowarzyk","is_ca":true},{"name":"Vincent Messier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02470814035812019,"gpt":0.3344359905067998,"spread":0.3097278501486797,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001620297,0.002511371,0.001666644,0.002328983,0.0009724245,0.0007055935,0.001501611,0.0008942713,0.002257213],"category_scores_gemma":[0.0005338574,0.0007441191,0.001198445,0.001528664,0.0006746645,0.0005787525,0.00109732,0.002004168,0.002488934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007862479,"about_ca_system_score_gemma":0.0008316324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00135149,"about_ca_topic_score_gemma":0.00243622,"domain_scores_codex":[0.9980119,0.0004983373,0.0001638494,0.0003287077,0.0008258086,0.0001713245],"domain_scores_gemma":[0.9990313,0.000245817,0.0001955653,0.0001584561,0.0001889177,0.0001799657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006562168,0.00006849916,0.0002707624,0.00008409446,0.0000180192,0.00003549605,0.00001980792,0.00004747622,0.9964499,0.0001365951,0.0002916192,0.00251214],"study_design_scores_gemma":[0.00002219184,0.000226479,0.002476602,0.000009118988,0.00003260637,0.0003618569,0.0000155882,0.001193814,0.9910589,0.0001019741,0.004472679,0.00002815368],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3845574,0.005166416,0.5805964,0.0006069908,0.0003301726,0.002689386,0.0098717,0.007406137,0.008775426],"genre_scores_gemma":[0.5054994,0.007377828,0.439965,0.0003415208,0.0001237743,0.003842663,0.01880613,0.0009197745,0.02312389],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002511371,"threshold_uncertainty_score":0.008569002,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2566884777","doi":"10.1101/pdb.top080630","title":"Methods for Synchronization and Analysis of the Budding Yeast Cell Cycle","year":2017,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Cell cycle; Cell biology; Cell division; Biology; Cyclin; Yeast; Budding yeast; Population; Cyclin-dependent kinase 1; Cell; Genetics; Saccharomyces cerevisiae","authors":[{"name":"Adam P. Rosebrock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02515747879152264,"gpt":0.3747831455318678,"spread":0.3496256667403452,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00322544,0.002689621,0.001774584,0.004585213,0.00260244,0.00119886,0.003314305,0.001137221,0.0207678],"category_scores_gemma":[0.002129455,0.001934357,0.001621595,0.003446982,0.001230863,0.0008675552,0.002401642,0.005275448,0.02169395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001310198,"about_ca_system_score_gemma":0.001900841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001894255,"about_ca_topic_score_gemma":0.006149876,"domain_scores_codex":[0.995945,0.0006694391,0.0005427346,0.0008148002,0.001755422,0.0002725304],"domain_scores_gemma":[0.9983189,0.0003341961,0.0001800372,0.0007006153,0.0003098172,0.000156479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004264638,0.0002819332,0.000533793,0.001183512,0.00009601244,0.00039043,0.0003655403,0.001092429,0.9020525,0.008565959,0.01739455,0.06761693],"study_design_scores_gemma":[0.0003111657,0.000575149,0.003075022,0.0003299161,0.0001749511,0.0009461991,0.0001022098,0.005149861,0.5418256,0.003595223,0.4437381,0.0001765355],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01022839,0.005725371,0.9369112,0.0003759969,0.001504333,0.009431164,0.01333469,0.006595023,0.01589384],"genre_scores_gemma":[0.02099236,0.007398542,0.8929331,0.0004720917,0.0002365907,0.02674668,0.0235311,0.003326722,0.02436284],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0207678,"threshold_uncertainty_score":0.06947523,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2234521185","doi":"10.1101/pdb.top084111","title":"Construction of Multifragment Plasmids by Homologous Recombination in Yeast","year":2015,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Homologous recombination; Plasmid; Cloning (programming); Saccharomyces cerevisiae; Genetics; Yeast; Genome; In vitro recombination; FLP-FRT recombination; Biology; Computational biology; DNA; Homologous chromosome; Insert (composites); Gene; Molecular cloning; Recombination; Genetic recombination; Computer science; Peptide sequence","authors":[{"name":"Jolanda van Leeuwen","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Guihong Tan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02352963597839297,"gpt":0.2938453227505889,"spread":0.270315686772196,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001445356,0.0007393048,0.0009485431,0.001231326,0.0007261193,0.001038719,0.001679142,0.0007174425,0.003082191],"category_scores_gemma":[0.0007043939,0.0007004017,0.0007558041,0.001186618,0.0005064273,0.0005775165,0.001327437,0.002104728,0.004000138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005769625,"about_ca_system_score_gemma":0.0006181099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006835512,"about_ca_topic_score_gemma":0.0008065092,"domain_scores_codex":[0.9991635,0.000139917,0.0001395324,0.0001804118,0.0002722968,0.0001043902],"domain_scores_gemma":[0.9996136,0.00009617992,0.00007438989,0.00009454154,0.0000528829,0.00006848243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002507098,0.0001434877,0.0002698509,0.0005111316,0.00002906878,0.000346007,0.0002485565,0.00112245,0.9632857,0.007278182,0.001960592,0.02455432],"study_design_scores_gemma":[0.0001662961,0.0004717767,0.001792975,0.0001151432,0.00006871636,0.001327809,0.000110167,0.008495172,0.8458613,0.001820625,0.1396908,0.00007935861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2918698,0.004817299,0.6612968,0.0009529836,0.0006491224,0.002918117,0.01342892,0.009041734,0.01502522],"genre_scores_gemma":[0.4824912,0.006227902,0.4409869,0.000308401,0.0001063677,0.001885584,0.0400892,0.002311435,0.02559293],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003082191,"threshold_uncertainty_score":0.01031095,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}