{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":14,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":14,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"e3ac59220101","filters":{"venue":"Computational biology"}},"results":[{"id":"W1602258815","doi":"10.1007/978-1-4020-2330-9_11","title":"Some Desiderata for Liberal Supertrees","year":2004,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Supertree; Construct (python library); Relevance (law); Variety (cybernetics); Computer science; Biology; Political science; Artificial intelligence; Law; Phylogenetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02457286081865412,"gpt":0.2566813966953028,"spread":0.2321085358766486,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000586461,0.0002682753,0.0002729504,0.00005011926,0.0001115914,0.00001365476,0.0001727339,0.0003711517,0.00002976837],"category_scores_gemma":[0.00002489634,0.0002604153,0.000186377,0.00000601271,0.0001685559,4.536088e-7,0.0001414327,0.00007587334,0.00002164748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002174235,"about_ca_system_score_gemma":0.0002170605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003020401,"about_ca_topic_score_gemma":0.000009034609,"domain_scores_codex":[0.9990143,0.0000102458,0.0002482493,0.0004743571,0.00004858929,0.0002042901],"domain_scores_gemma":[0.9994578,0.00006083304,0.00009796363,0.0001792995,0.000151902,0.00005217654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001490564,0.00003576857,0.0001770763,0.00005660368,0.0007544699,0.000003374816,0.00003029219,0.004981716,0.02295552,0.9534949,0.0136602,0.003701028],"study_design_scores_gemma":[0.0006438735,0.0005196424,0.0002848972,0.00001504576,0.00004095414,0.00001473526,0.000001687145,0.00003844185,0.000730645,0.778051,0.219281,0.0003780799],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.1549995,0.3598616,0.06768008,0.01487206,0.01592324,0.01223437,0.02268986,0.0002355559,0.3515037],"genre_scores_gemma":[0.6386021,0.004848578,0.06310706,0.007972118,0.01205893,0.0003185077,0.0239285,0.0004110019,0.2487532],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.4836026,"threshold_uncertainty_score":0.9999848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963627601","doi":"10.1007/978-94-011-4309-7_46","title":"Duplication, Rearrangement, and Reconciliation","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Gene duplication; Phylogenetic tree; Genome; Breakpoint; Gene; Genetics; Biology; Sequence (biology); Tree (set theory); Gene family; Computational biology; Evolutionary biology; Combinatorics; Mathematics; Chromosome","retraction":null,"screen_n_in":null,"score":{"opus":0.01505957026693104,"gpt":0.2445813760675773,"spread":0.2295218058006463,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104192,0.0002100833,0.0001771922,0.00008440248,0.00006744712,0.00001441529,0.0001162073,0.0003390864,0.0004246731],"category_scores_gemma":[0.00001359701,0.0002261328,0.00006160638,0.00001485917,0.0001255767,0.000001974838,0.00007042583,0.00009461986,0.0001700596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000221294,"about_ca_system_score_gemma":0.00006517825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002871612,"about_ca_topic_score_gemma":0.000005380953,"domain_scores_codex":[0.999017,0.0000213498,0.0002481478,0.0004975495,0.00007831579,0.0001376497],"domain_scores_gemma":[0.9994477,0.00002016453,0.0001397356,0.0002089147,0.0001263969,0.00005710323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003557664,0.0001228124,0.002166937,0.0001789322,0.001695667,0.000009363918,0.0001679847,0.001776399,0.04012321,0.3161079,0.05970213,0.5775929],"study_design_scores_gemma":[0.0004075055,0.0002064226,0.001116275,0.00001363327,0.00003477892,0.00001968263,0.000001765694,0.0001399769,0.00008423215,0.09063818,0.9070278,0.0003097521],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.01476228,0.01274891,0.01047968,0.001700816,0.0005772038,0.00145629,0.0006425748,0.00009993195,0.9575323],"genre_scores_gemma":[0.1185478,0.01360897,0.01931392,0.003144925,0.003337803,0.0001981393,0.04947547,0.0003006066,0.7920724],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.8473257,"threshold_uncertainty_score":0.9221428,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1481103812","doi":"10.1007/978-1-4471-5298-9_13","title":"The Potential of Family-Free Genome Comparison","year":2013,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Genome; Gene family; Computational biology; Comparative genomics; Genomics; Gene; Biology; Genetics; Evolutionary biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01648567117936326,"gpt":0.2507804403211416,"spread":0.2342947691417783,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001277529,0.0002438926,0.0002967226,0.0000596291,0.0001038168,0.00001602748,0.0005930528,0.0003745601,0.0001241987],"category_scores_gemma":[0.00002405254,0.0001930244,0.000178909,0.00001577081,0.0003739966,0.000001209267,0.0003992891,0.0001555836,0.0001562967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001757172,"about_ca_system_score_gemma":0.0001037011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005759771,"about_ca_topic_score_gemma":0.000003423688,"domain_scores_codex":[0.9988049,0.00003829501,0.0004360376,0.0003611781,0.0001488126,0.0002107564],"domain_scores_gemma":[0.9988353,0.00004766868,0.00033153,0.0004470445,0.0002861797,0.00005233804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003897295,0.0002272257,0.0003118732,0.0001915488,0.004126152,0.00001126645,0.00009889084,0.01974992,0.4430482,0.3623787,0.0921737,0.07729275],"study_design_scores_gemma":[0.0009043422,0.0006876765,0.00305403,0.00001539732,0.00008033758,0.0000180599,0.00002440255,0.0009394054,0.0003426772,0.123382,0.8700274,0.0005243008],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.0485604,0.0968184,0.1058077,0.002277793,0.004829879,0.004047381,0.002490998,0.0001240799,0.7350434],"genre_scores_gemma":[0.5165416,0.004025988,0.02354337,0.000818474,0.003665952,0.0001309233,0.01953305,0.0003034436,0.4314372],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.7778537,"threshold_uncertainty_score":0.7871305,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W39630659","doi":"10.1007/978-1-4471-5298-9_12","title":"Error Detection and Correction of Gene Trees","year":2013,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université de Montréal","funders":"","keywords":"Gene; Tree (set theory); Biology; Genome; Evolutionary biology; Ensembl; Phylogenetics; Gene family; Computational biology; Stickleback; Sequence (biology); Genetics; Fish <Actinopterygii>; Genomics; Mathematics; Combinatorics","retraction":null,"screen_n_in":null,"score":{"opus":0.01442042390856556,"gpt":0.2323964691003467,"spread":0.2179760451917811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004110158,0.0001493573,0.0001864718,0.00005348512,0.00004572753,0.000003915761,0.0000539504,0.0002836722,0.0000355406],"category_scores_gemma":[0.00001449269,0.000144571,0.00005543597,0.000007748408,0.0001564007,2.919053e-7,0.00006059897,0.00006502231,0.00001177454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007035274,"about_ca_system_score_gemma":0.00002996166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001353396,"about_ca_topic_score_gemma":0.00002222998,"domain_scores_codex":[0.9994126,0.00001490702,0.0001927883,0.0002619495,0.0000367724,0.000080994],"domain_scores_gemma":[0.9995633,0.00003049789,0.0001551033,0.00009428545,0.0001292831,0.00002755383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001051471,0.0000288707,0.0004688567,0.00003423891,0.0005687214,6.949363e-7,0.00005109065,0.002607227,0.8923028,0.0049596,0.001868857,0.09700395],"study_design_scores_gemma":[0.002183794,0.005003207,0.03668563,0.00007656249,0.0003534036,0.0002230507,0.00005685653,0.009283566,0.09726457,0.08494097,0.7620317,0.001896683],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7525444,0.02321213,0.01627103,0.0001807446,0.003838349,0.001106239,0.0004543641,0.00001943313,0.2023733],"genre_scores_gemma":[0.9675309,0.0005729593,0.001338194,0.00007928369,0.0002869741,0.00001327484,0.0004420317,0.00002419484,0.02971216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7950382,"threshold_uncertainty_score":0.5895433,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2937178077","doi":"10.1007/978-3-030-10837-3_5","title":"Gene Family Evolution—An Algorithmic Framework","year":2019,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Supertree; Tree (set theory); Gene family; Gene; Computational biology; Biology; Annotation; Tree of life (biology); Family tree; Phylogenetic tree; Computer science; Genome; Genetics; Mathematics; Combinatorics","retraction":null,"screen_n_in":null,"score":{"opus":0.01604119235414066,"gpt":0.2533503940419569,"spread":0.2373092016878162,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009099826,0.0003371342,0.0003302614,0.00007965354,0.0001025377,0.00001387457,0.0002979045,0.0007090024,0.00005097173],"category_scores_gemma":[0.00001985721,0.0003446942,0.0001644826,0.00001695185,0.0001910772,5.49207e-7,0.000224128,0.0002035523,0.0002274732],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003769008,"about_ca_system_score_gemma":0.0002926405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007306471,"about_ca_topic_score_gemma":0.000003574251,"domain_scores_codex":[0.998647,0.00003326351,0.000304107,0.000674792,0.00009846398,0.0002424237],"domain_scores_gemma":[0.9990835,0.00005237209,0.0001745971,0.0003863694,0.0002241559,0.0000790071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000157347,0.0000969787,0.001247676,0.00005109926,0.00138889,0.000009070466,0.00006673245,0.01349359,0.1111038,0.8533796,0.004799708,0.01420555],"study_design_scores_gemma":[0.0005747359,0.001131594,0.006017759,0.00003288906,0.00009066595,0.00004388205,0.00001314561,0.0006284866,0.0003704572,0.609581,0.3804781,0.00103734],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.1658859,0.09491421,0.3370522,0.0008611533,0.010191,0.00296267,0.005227681,0.0001080976,0.3827971],"genre_scores_gemma":[0.7972217,0.001642036,0.06673206,0.0026491,0.004897836,0.00004859031,0.008722555,0.0002419367,0.1178442],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.6313357,"threshold_uncertainty_score":0.9999005,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W155408510","doi":"10.1007/978-1-4471-5298-9_3","title":"How to Infer Ancestral Genome Features by Parsimony: Dynamic Programming over an Evolutionary Tree","year":2013,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Tree (set theory); Phylogenetics; Maximum parsimony; Evolutionary biology; Phylogenetic tree; Computer science; Dynamic programming; Theoretical computer science; Genetic programming; Biology; Artificial intelligence; Algorithm; Mathematics; Combinatorics; Genetics; Clade; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01091562138572523,"gpt":0.2514840910126411,"spread":0.2405684696269159,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007063081,0.0004331216,0.0003255394,0.0001358845,0.00009914937,0.00007059352,0.0003652581,0.0006059245,0.0001338086],"category_scores_gemma":[0.00001718775,0.0004322424,0.0001470554,0.00003596079,0.0001900643,0.0000103559,0.0002008664,0.000219291,0.00008767814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008101023,"about_ca_system_score_gemma":0.0001216572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009955883,"about_ca_topic_score_gemma":0.00002450089,"domain_scores_codex":[0.9983004,0.00004303897,0.0002572016,0.0008235633,0.0001731125,0.0004026282],"domain_scores_gemma":[0.9990848,0.00002072714,0.0001725869,0.0003193695,0.0002075487,0.0001949834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005692714,0.0007680964,0.003541147,0.0003234695,0.003724499,0.00006475809,0.0002851922,0.008813783,0.3096762,0.03881872,0.1539387,0.4794762],"study_design_scores_gemma":[0.000587856,0.001273239,0.0136949,0.00001998558,0.00005531803,0.00003764412,0.00001277536,0.0003123376,0.00006180366,0.0109815,0.972029,0.0009335891],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.4603193,0.1255718,0.1954658,0.01727145,0.007766187,0.02111764,0.01561789,0.001191339,0.1556786],"genre_scores_gemma":[0.3745476,0.0005603924,0.08965193,0.002063972,0.002362435,0.0004225211,0.1006138,0.0003450094,0.4294323],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8180904,"threshold_uncertainty_score":0.999813,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W976619511","doi":"10.1007/978-1-4471-5298-9_11","title":"Fractionation, Rearrangement, Consolidation, Reconstruction","year":2013,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Synteny; Biology; Adjacency list; Extant taxon; Computational biology; Evolutionary biology; Gene; Genetics; Computer science; Algorithm","retraction":null,"screen_n_in":null,"score":{"opus":0.01614198321091935,"gpt":0.249007113949463,"spread":0.2328651307385436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001259784,0.0002948808,0.0002346213,0.0001799848,0.0001236994,0.00003110298,0.0001751111,0.0005116204,0.002999285],"category_scores_gemma":[0.00004688492,0.0003210765,0.0001255816,0.00002827041,0.0001988717,0.000007191756,0.00009501634,0.000173567,0.001274037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005939408,"about_ca_system_score_gemma":0.0001512125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005379733,"about_ca_topic_score_gemma":0.000004445034,"domain_scores_codex":[0.9986331,0.00003960903,0.0004090632,0.0005766105,0.0001488203,0.0001928346],"domain_scores_gemma":[0.9986778,0.00003710387,0.0003468382,0.0002639081,0.0005987108,0.00007567229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001313769,0.0001333217,0.00152878,0.0001327733,0.002393463,0.000006046557,0.0000644483,0.003563522,0.04426798,0.4248772,0.2649099,0.2579911],"study_design_scores_gemma":[0.0005175573,0.0001810954,0.000611256,0.00002302992,0.00004784198,0.00007569751,0.000007267633,0.0002608432,0.0002352165,0.1041474,0.8934391,0.0004537539],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.003466562,0.002484734,0.05010075,0.001225834,0.00242059,0.00142493,0.000430769,0.0001197702,0.9383261],"genre_scores_gemma":[0.04096621,0.001591853,0.03102336,0.001451301,0.003782236,0.0002219093,0.03756649,0.0002260681,0.8831705],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.6285291,"threshold_uncertainty_score":0.9999241,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W66515822","doi":"10.1007/978-94-011-4309-7_28","title":"Marker Density and Estimates of Chromosome Rearrangement","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Breakpoint; Chromosomal translocation; Biology; Chromosome; Divergence (linguistics); Genetics; Chromosomal rearrangement; Karyotype; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01895251350387053,"gpt":0.2228571022460699,"spread":0.2039045887421994,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004742369,0.0001362563,0.0002224994,0.00001370037,0.00007328963,0.000008716801,0.00008354657,0.000165413,0.002867745],"category_scores_gemma":[0.000007737039,0.00006009144,0.00006126674,0.00002072852,0.0001413403,0.00001269375,0.0000629212,0.00006853074,0.00004794645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000978267,"about_ca_system_score_gemma":0.00001118494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000220866,"about_ca_topic_score_gemma":0.00004050567,"domain_scores_codex":[0.9993683,0.00001129273,0.0002070134,0.0002428733,0.00007509434,0.00009547907],"domain_scores_gemma":[0.9995252,0.0002173617,0.000104951,0.00003120288,0.0000771652,0.00004409183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001511314,0.0001601111,0.01205447,0.0000675296,0.0004706405,0.00001663314,0.0001102931,0.0002550454,0.04976751,0.4701338,0.001455763,0.4653571],"study_design_scores_gemma":[0.0001663698,0.0003231129,0.1322349,0.00005230185,0.00005407308,0.00003954378,0.000002569008,0.000353237,0.0001011061,0.7739958,0.09239949,0.000277461],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6998146,0.00351956,0.00005901875,0.002882051,0.0003635385,0.0007454575,0.00131301,0.000112356,0.2911904],"genre_scores_gemma":[0.9781367,0.0004987148,0.002560388,0.0003409102,0.0004230996,0.00001058254,0.003102231,0.000003350221,0.01492404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4650796,"threshold_uncertainty_score":0.9980438,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2938409148","doi":"10.1007/978-3-030-10837-3_8","title":"Evolutionary Rate Change and the Transformation from Additive to Ultrametric: Modal Similarity of Orthologs in Fish and Flower Phylogenomics","year":2019,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"","keywords":"Ultrametric space; Phylogenomics; Biology; Transformation (genetics); Tree (set theory); Phylogenetic tree; Phylogenetics; Mutation rate; Evolutionary biology; Mathematics; Genetics; Combinatorics; Gene; Discrete mathematics","retraction":null,"screen_n_in":null,"score":{"opus":0.01961569452826045,"gpt":0.2266930732818581,"spread":0.2070773787535977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108744,0.0001397331,0.0002261295,0.00009586678,0.00003930796,0.000005755287,0.00008435991,0.0003348221,0.00003215702],"category_scores_gemma":[0.0000330297,0.0001193358,0.0000496328,0.00002746987,0.0002159404,0.000003666959,0.00008167184,0.0001160894,0.000002967902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009862051,"about_ca_system_score_gemma":0.00004299928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003811077,"about_ca_topic_score_gemma":0.00009653008,"domain_scores_codex":[0.9993376,0.00006401158,0.0002026231,0.0002606116,0.00005195426,0.00008326279],"domain_scores_gemma":[0.9995393,0.0001265018,0.0001110078,0.00009243972,0.0001002876,0.00003047793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","study_design_scores_codex":[0.01535041,0.0002884438,0.08593252,0.0005406885,0.003108187,0.00002351886,0.01439275,0.06114757,0.01562948,0.6234297,0.009717973,0.1704388],"study_design_scores_gemma":[0.006706518,0.0006861745,0.7390319,0.00008033891,0.0001815121,0.00003457486,0.0001673011,0.003262053,0.0004565352,0.1427923,0.105664,0.000936801],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9774393,0.001448808,0.003489267,0.001762712,0.0003790411,0.001231525,0.008467395,0.000006821263,0.005775151],"genre_scores_gemma":[0.9908507,0.0004386853,0.0009820984,0.001503305,0.0001071903,0.000006780389,0.005531597,0.000008920077,0.0005707481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6530994,"threshold_uncertainty_score":0.4866374,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2261480954","doi":"10.1007/978-94-011-4309-7_37","title":"Unraveling Crucifer Genomes Through Comparative Mapping","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Genome; Biology; Crucifer; Arabidopsis; Polyploid; Genome evolution; Evolutionary biology; Genetics; Genomics; Comparative genomics; Chromosome; Genome size; Gene; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.07836224469815596,"gpt":0.2678911175866462,"spread":0.1895288728884903,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00004000283,0.0002580469,0.0003598655,0.00001988038,0.000249417,0.00003348321,0.0002148768,0.0002872462,0.006424031],"category_scores_gemma":[0.00000423012,0.0001162635,0.0001551466,0.00005395886,0.0001355141,0.00003508774,0.00007570602,0.0001932292,0.0008044708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003423135,"about_ca_system_score_gemma":0.00003047997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002914898,"about_ca_topic_score_gemma":0.00005845975,"domain_scores_codex":[0.9988518,0.00003375413,0.0003486216,0.0004415949,0.0001166351,0.0002076476],"domain_scores_gemma":[0.9992285,0.0003864438,0.000154839,0.00004640458,0.0001281194,0.00005570564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004427408,0.00008264559,0.0003416592,0.00001384229,0.0004015474,0.00001333475,0.0009716225,0.004412436,0.004660408,0.8670093,0.002008144,0.1200408],"study_design_scores_gemma":[0.00007733359,0.00008597074,0.002906725,0.00002513303,0.00001405342,0.00001372391,0.00001686074,0.0002838989,0.000007421299,0.4631847,0.5331393,0.0002448172],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.01882977,0.00493748,0.0004642785,0.002333656,0.0005206699,0.0005599377,0.001028567,0.0001734986,0.9711521],"genre_scores_gemma":[0.8067544,0.001336745,0.01106087,0.003676356,0.004417372,0.00005690459,0.01441762,0.00001153098,0.1582682],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.812884,"threshold_uncertainty_score":0.9999735,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2211323075","doi":"10.1007/978-94-011-4309-7_14","title":"MAPIT—a Semi-Automated Approach to the Representation of Genetic Maps","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Representation (politics); Computer science; Political science","retraction":null,"screen_n_in":null,"score":{"opus":0.01902326466489127,"gpt":0.2539634048595975,"spread":0.2349401401947062,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006965767,0.0002303136,0.0002818002,0.00007097996,0.00007570796,0.000008153733,0.0002841376,0.0002665942,0.00002926673],"category_scores_gemma":[0.00001735302,0.000185769,0.0001379046,0.00003793587,0.0001633594,2.51866e-7,0.0001648813,0.00008590953,0.00004793597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001097218,"about_ca_system_score_gemma":0.00007802446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001154409,"about_ca_topic_score_gemma":0.000004513372,"domain_scores_codex":[0.9988577,0.00004622053,0.0003719691,0.0004639635,0.00009883856,0.0001612573],"domain_scores_gemma":[0.9992485,0.00004499459,0.0001761567,0.0003279604,0.0001557731,0.00004662441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005960425,0.0002602502,0.002376142,0.0001729028,0.003132818,0.000006727978,0.000689427,0.6485912,0.0650063,0.1093485,0.1302829,0.03953683],"study_design_scores_gemma":[0.001031766,0.0009672453,0.01605193,0.00004575753,0.0002155957,0.0001139615,0.00004337789,0.004948155,0.001835648,0.1011612,0.8724958,0.001089584],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.09192781,0.02101633,0.02057055,0.001349699,0.001384959,0.003243983,0.003004141,0.00008795447,0.8574145],"genre_scores_gemma":[0.9551222,0.001289233,0.008829967,0.001119925,0.000900702,0.00008638221,0.00480018,0.00009249138,0.02775892],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8631944,"threshold_uncertainty_score":0.7575441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W194204729","doi":"10.1007/978-94-011-4309-7_39","title":"How Can Duplication be Analyzed?","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Gene duplication; Computer science; Biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01678000970225089,"gpt":0.2436204825025061,"spread":0.2268404728002552,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006572218,0.000277439,0.000240324,0.0001163615,0.00006880569,0.00002836455,0.0002364998,0.0004684222,0.0002474916],"category_scores_gemma":[0.0000124578,0.000288014,0.000150328,0.00002426197,0.0001534793,0.000001466675,0.00008430539,0.0001357364,0.0000598533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003405785,"about_ca_system_score_gemma":0.0001049204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004836652,"about_ca_topic_score_gemma":0.0000107318,"domain_scores_codex":[0.9988852,0.00002491843,0.0002063761,0.0005727726,0.0001111753,0.0001995647],"domain_scores_gemma":[0.9993408,0.00001887132,0.0001609492,0.000252296,0.0001508254,0.00007628219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004205176,0.0002790758,0.0008297519,0.00019576,0.004336584,0.00006599185,0.0001675938,0.005963243,0.1145414,0.4605117,0.07027066,0.3424178],"study_design_scores_gemma":[0.0003750875,0.0002194937,0.0003055842,0.000009228764,0.00005452417,0.00003681141,0.000002806704,0.0001961403,0.0002843332,0.04820939,0.9498801,0.0004264688],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.01132441,0.01213697,0.02610455,0.01585327,0.001018779,0.00225208,0.003167644,0.0002022385,0.9279401],"genre_scores_gemma":[0.2491548,0.001955695,0.008130825,0.002387125,0.002383673,0.00009015475,0.05623565,0.0001913792,0.6794707],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.8796095,"threshold_uncertainty_score":0.9999572,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139903183","doi":"10.1007/978-94-011-4309-7_23","title":"Genome Scrambling Versus Functional Clustering","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Genome; Scrambling; Biology; Phylogenetic tree; Computational biology; Surprise; Evolutionary biology; Comparative genomics; Genetics; Genomics; Gene; Computer science; Algorithm","retraction":null,"screen_n_in":null,"score":{"opus":0.03732079960184233,"gpt":0.2540957836611473,"spread":0.216774984059305,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000655171,0.0002832229,0.0002417708,0.00008114551,0.0001352122,0.00001517714,0.0001584598,0.0003642142,0.00034106],"category_scores_gemma":[0.00001123405,0.0003019625,0.0001594889,0.00001387598,0.0001559546,3.961642e-7,0.0001867225,0.0001397977,0.0001523884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002982291,"about_ca_system_score_gemma":0.0001246516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002106621,"about_ca_topic_score_gemma":0.00001152614,"domain_scores_codex":[0.9989006,0.00001560779,0.0002721272,0.0005147383,0.00008496294,0.0002119802],"domain_scores_gemma":[0.9994747,0.00004693426,0.0001150415,0.0001889143,0.0001124964,0.00006188623],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005813006,0.0001990051,0.0005493876,0.0001777095,0.007683945,0.00005009372,0.0002343328,0.4195455,0.2281406,0.217438,0.007564136,0.1126043],"study_design_scores_gemma":[0.001295781,0.0005803379,0.001878055,0.00001544771,0.00007303629,0.00003570517,0.000004274646,0.0004171825,0.00007100789,0.06670608,0.9282349,0.0006882133],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.03874478,0.02657683,0.0171906,0.0004203517,0.004024337,0.0007107186,0.0009754155,0.0000436612,0.9113133],"genre_scores_gemma":[0.849154,0.003105659,0.006921796,0.001099991,0.005676542,0.00005009542,0.01178388,0.0002081258,0.1219999],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9206707,"threshold_uncertainty_score":0.9999433,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2254291252","doi":"10.1007/978-94-011-4309-7_7","title":"Human and Mouse DNA Sequence Comparisons: Further Evidence for a Mosaic Model of Genomic Evolution","year":2000,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Genome; Genetics; Human genome; Mosaic; Evolutionary biology; Sequence (biology); Gene; Mutation; DNA; Mutation rate; Sine; Computational biology; Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.08195969903111398,"gpt":0.3097383394053135,"spread":0.2277786403741995,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009199924,0.0002228203,0.0003100355,0.0000587433,0.000086196,0.000005970013,0.0001550434,0.0002774945,0.00001157068],"category_scores_gemma":[0.00001347196,0.0002292273,0.0001070309,0.00000749453,0.0003198837,7.598678e-7,0.0001079681,0.00006906828,0.000003701011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002674696,"about_ca_system_score_gemma":0.0001319555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001079297,"about_ca_topic_score_gemma":0.00001614542,"domain_scores_codex":[0.9990188,0.00001886378,0.0003236312,0.0004374264,0.00005051593,0.0001506918],"domain_scores_gemma":[0.9993752,0.00005297307,0.0002081187,0.0001784281,0.0001452436,0.00004001474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001624463,0.00002691808,0.0004032076,0.0000845794,0.0003337981,2.47742e-7,0.00006159772,0.04964314,0.8779048,0.0691968,0.0009727362,0.001209773],"study_design_scores_gemma":[0.002997719,0.003218285,0.003459269,0.0002699197,0.0004983178,0.00004973381,0.00004048654,0.06829553,0.005930285,0.873137,0.03985501,0.00224847],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.898044,0.03855189,0.05015444,0.0003232246,0.0002052999,0.00174009,0.004087754,0.00001816497,0.006875069],"genre_scores_gemma":[0.9855582,0.0007868233,0.006683121,0.0001146789,0.0001445181,0.00003675195,0.00072408,0.00003568716,0.00591614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8719745,"threshold_uncertainty_score":0.9347618,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}