{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":157,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":157,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"420d69f93348","filters":{"venue":"DNA repair"}},"results":[{"id":"W2045164156","doi":"10.1016/j.dnarep.2004.03.029","title":"DNA damage-induced activation of ATM and ATM-dependent signaling pathways","year":2004,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":470,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Canadian Institutes of Health Research; U.S. Department of Defense","keywords":"DNA damage; Biology; Signal transduction; Cell biology; Ataxia-telangiectasia; Phosphorylation; DNA repair; Cell cycle; DNA; Cell; Genetics","authors":[{"name":"Ebba U. Kurz","is_ca":true},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03399869984866833,"gpt":0.2840033172210316,"spread":0.2500046173723632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000434765,0.001294033,0.00164952,0.001264709,0.0003359437,0.00132791,0.001511349,0.001137858,0.002916628],"category_scores_gemma":[0.0003317941,0.0002969789,0.0004092004,0.001622346,0.0004969654,0.001117974,0.0005105357,0.00194796,0.003418135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008014464,"about_ca_system_score_gemma":0.0008474664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006876735,"about_ca_topic_score_gemma":0.001151443,"domain_scores_codex":[0.9998304,0.00001929521,0.00001821865,0.00004013965,0.00006862282,0.00002327793],"domain_scores_gemma":[0.9998215,0.00005215656,0.00002769113,0.000009517783,0.00006764916,0.00002148448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001866032,0.0001024696,0.0002289152,0.01026065,0.00008164583,0.0005815546,0.0000477284,0.0005814324,0.03000398,0.004588534,0.0285233,0.9248132],"study_design_scores_gemma":[0.00002897668,0.0001063255,0.001285161,0.001019605,0.0001124531,0.002390479,0.00007053098,0.0001670751,0.01380065,0.002620864,0.978367,0.00003082616],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004999021,0.9944014,0.001179313,0.0003126375,0.0004461713,0.00001210748,0.00004997374,0.00003729659,0.003061225],"genre_scores_gemma":[0.002082609,0.9938559,0.0007779544,0.0002473807,0.0002157769,0.00001665887,0.0001065343,0.000003606425,0.002693522],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002916628,"threshold_uncertainty_score":0.009757102,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2888493183","doi":"10.1016/j.dnarep.2018.08.022","title":"The comings and goings of PARP-1 in response to DNA damage","year":2018,"lang":"en","type":"review","venue":"DNA repair","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":342,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Poly ADP ribose polymerase; Biology; DNA damage; DNA repair; Chromatin; DNA; Polymerase; Cell biology; Genetics","authors":[{"name":"John M. Pascal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04573360199352177,"gpt":0.3756352712475349,"spread":0.3299016692540131,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006996942,0.0006478862,0.001157316,0.001218606,0.0002877407,0.001532689,0.0009546416,0.001199576,0.003446779],"category_scores_gemma":[0.001013112,0.0002897293,0.0004888724,0.001216805,0.0007027019,0.002112473,0.0007433926,0.002653641,0.001328115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005540018,"about_ca_system_score_gemma":0.0009287153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007009209,"about_ca_topic_score_gemma":0.001503733,"domain_scores_codex":[0.9997577,0.00004509097,0.00003589491,0.00004501527,0.00008520071,0.00003113119],"domain_scores_gemma":[0.999669,0.0001414718,0.00005903566,0.00001439982,0.00008627008,0.00002990558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001359407,0.00004676532,0.0002478999,0.01432762,0.0001004427,0.0002472675,0.0001119409,0.0004349052,0.002517362,0.006573932,0.03115928,0.9440966],"study_design_scores_gemma":[0.00001619663,0.00009990075,0.0006780077,0.002489463,0.00009745198,0.0009629243,0.0001022154,0.00009930479,0.0009078613,0.003743659,0.9907826,0.00002057834],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009998954,0.9982721,0.000115855,0.0005057705,0.0002302991,0.000002795536,0.00001587157,0.000005816666,0.0007516267],"genre_scores_gemma":[0.0008772719,0.9981149,0.0001055814,0.0002229468,0.0002286377,0.00000294582,0.00001706619,0.000001110316,0.000429543],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003446779,"threshold_uncertainty_score":0.01153064,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981844581","doi":"10.1016/j.dnarep.2010.10.001","title":"Mre11–Rad50–Nbs1 conformations and the control of sensing, signaling, and effector responses at DNA double-strand breaks","year":2010,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":223,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; National Institutes of Health","keywords":"Rad50; Effector; Biology; DNA repair; Homologous recombination; DNA; DNA damage; Computational biology; Telomere; Cell biology; Genetics; Nijmegen breakage syndrome; DNA-binding protein; Ataxia-telangiectasia; Transcription factor","authors":[{"name":"Gareth J. Williams","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01316843230959538,"gpt":0.2713386896779882,"spread":0.2581702573683929,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005775609,0.001139453,0.001407272,0.001018911,0.0002654577,0.001061212,0.001360461,0.00133315,0.002148884],"category_scores_gemma":[0.0003999023,0.0004449009,0.0002455408,0.001424337,0.0008042629,0.001270637,0.0006109492,0.00135602,0.002696635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00107488,"about_ca_system_score_gemma":0.0008004809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001005322,"about_ca_topic_score_gemma":0.00186489,"domain_scores_codex":[0.999854,0.00001917992,0.00001702791,0.00003626048,0.00005247832,0.00002105785],"domain_scores_gemma":[0.9998283,0.00005743277,0.00004122694,0.000007661589,0.00004326724,0.00002204828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002067087,0.00008357451,0.0002827521,0.007620686,0.00007859811,0.0002581206,0.00005410987,0.001190674,0.02535178,0.008438299,0.02996378,0.9264709],"study_design_scores_gemma":[0.00002644909,0.00006667568,0.001134932,0.0007281411,0.00005753907,0.0009714157,0.00004731929,0.0002718027,0.005407833,0.002903284,0.9883572,0.00002728024],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003075576,0.9977776,0.0003988576,0.000186095,0.0001700655,0.000004724807,0.00001624192,0.0000123787,0.001126305],"genre_scores_gemma":[0.001724437,0.9963022,0.0003173236,0.000125772,0.0001565767,0.000007278511,0.00004572701,0.000002058168,0.001318584],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002148884,"threshold_uncertainty_score":0.007798851,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061462200","doi":"10.1016/j.dnarep.2010.09.011","title":"The ubiquitous role of ubiquitin in the DNA damage response","year":2010,"lang":"en","type":"review","venue":"DNA repair","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Ubiquitin; Biology; DNA repair; Ubiquitin-Protein Ligases; DNA damage; Cell biology; FANCD2; Checkpoint Kinase 2; Fanconi anemia; DNA; Mechanism (biology); Deubiquitinating enzyme; Genetics; Computational biology; Ubiquitin ligase; Phosphorylation; Gene; Protein kinase A; Protein-Serine-Threonine Kinases","authors":[{"name":"Abdallah Al-Hakim","is_ca":true},{"name":"Cristina Escribano‐Diaz","is_ca":true},{"name":"Marie-Claude Landry","is_ca":true},{"name":"Lara O’Donnell","is_ca":true},{"name":"Stephanie Panier","is_ca":true},{"name":"Rachel K. Szilard","is_ca":true},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01804594022877866,"gpt":0.2923667661504157,"spread":0.2743208259216371,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006988645,0.001357245,0.00169592,0.001502915,0.0004075311,0.001477647,0.001333857,0.001673243,0.001912118],"category_scores_gemma":[0.0006234855,0.0003721174,0.0003274113,0.002773989,0.001157012,0.001924663,0.0009131017,0.002052206,0.002157353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00116798,"about_ca_system_score_gemma":0.001322799,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001292726,"about_ca_topic_score_gemma":0.002119136,"domain_scores_codex":[0.9997942,0.0000205266,0.00002620215,0.00005004281,0.00008619913,0.00002281807],"domain_scores_gemma":[0.9996494,0.0001234488,0.00005234629,0.00001978691,0.0001053488,0.00004964685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001205849,0.00004426729,0.0001906737,0.006424272,0.00006531659,0.0003197941,0.00003595372,0.0004625723,0.005750202,0.005918904,0.03849424,0.9421733],"study_design_scores_gemma":[0.00001459607,0.0000370147,0.0007038801,0.000831858,0.00005974647,0.001298796,0.00004643295,0.00009594658,0.001498534,0.003679289,0.9917143,0.00001959537],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001314417,0.9977875,0.0004234691,0.0002901998,0.0003206532,0.000003137643,0.00001929486,0.000009505706,0.001014769],"genre_scores_gemma":[0.0007545039,0.9977245,0.0003291406,0.0001757758,0.0002789557,0.000004692203,0.00003270946,0.000001579684,0.0006982966],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001912118,"threshold_uncertainty_score":0.00847435,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116394383","doi":"10.1016/j.dnarep.2010.09.019","title":"A structural model for regulation of NHEJ by DNA-PKcs autophosphorylation","year":2010,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Canadian Institutes of Health Research; Health Canada; Alberta Innovates - Health Solutions","keywords":"DNA-PKcs; Autophosphorylation; Biology; Ku80; DNA repair; Ku70; Cell biology; DNA; DNA damage; Kinase; Protein kinase A; Biochemistry; DNA-binding protein; Gene; Transcription factor","authors":[{"name":"Tracey A. Dobbs","is_ca":true},{"name":"John A. Tainer","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02178745368901126,"gpt":0.2906490396082487,"spread":0.2688615859192374,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004631653,0.001262681,0.001311246,0.0006799297,0.000322897,0.001023124,0.001840483,0.001434233,0.001362863],"category_scores_gemma":[0.0002599073,0.0004035562,0.0004239245,0.0008899159,0.001111676,0.001878728,0.0005750697,0.002634443,0.001995621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001443337,"about_ca_system_score_gemma":0.0008285642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005489863,"about_ca_topic_score_gemma":0.0005707404,"domain_scores_codex":[0.9999034,0.00000987014,0.00001202807,0.00003071552,0.00002807848,0.00001574737],"domain_scores_gemma":[0.9999254,0.00002100868,0.00001578377,0.000006469533,0.00002269092,0.000008725541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003677092,0.0001847234,0.0002832832,0.01688205,0.000200334,0.001385779,0.000181819,0.007388624,0.1212621,0.1379235,0.04193559,0.6720046],"study_design_scores_gemma":[0.00009212536,0.0001633859,0.0007127432,0.001201669,0.0001887323,0.002862454,0.0000857705,0.00204484,0.02848606,0.05152792,0.9125568,0.00007751617],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002036855,0.98311,0.007713913,0.001452995,0.001267428,0.00002417237,0.00008273515,0.00009408853,0.004217874],"genre_scores_gemma":[0.0114761,0.9817727,0.00266273,0.0005204979,0.0004502148,0.00003577336,0.0001476958,0.000009525784,0.002924662],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001840483,"threshold_uncertainty_score":0.01047224,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109099295","doi":"10.1016/j.dnarep.2009.01.021","title":"Novel DNA mismatch-repair activity involving YB-1 in human mitochondria","year":2009,"lang":"en","type":"article","venue":"DNA repair","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":212,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôtel-Dieu de Québec","funders":"National Institutes of Health; Canadian Institutes of Health Research; Cancer Research Society; Kræftens Bekæmpelse","keywords":"Biology; DNA mismatch repair; Mitochondrion; Mitochondrial DNA; DNA repair; Cell biology; Base excision repair; Microsatellite instability; MSH2; DNA damage; Genetics; Molecular biology; DNA; Gene","authors":[{"name":"Nadja C. de Souza‐Pinto","is_ca":false},{"name":"Penelope A. Mason","is_ca":false},{"name":"Kazunari Hashiguchi","is_ca":false},{"name":"Lior Weissman","is_ca":false},{"name":"Jingyan Tian","is_ca":false},{"name":"David R.P. Guay","is_ca":true},{"name":"Michel Lebel","is_ca":true},{"name":"Tinna Stevnsner","is_ca":false},{"name":"Lene Juel Rasmussen","is_ca":false},{"name":"Vilhelm A. Bohr","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01518910594933072,"gpt":0.2553297801823999,"spread":0.2401406742330691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002114815,0.000359388,0.000356639,0.0004539107,0.0003735001,0.0003580485,0.0002965896,0.0003095985,0.0008838999],"category_scores_gemma":[0.0003730692,0.0002697017,0.000393034,0.0002371966,0.0002208027,0.0002650438,0.000281728,0.000383912,0.000431773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004037949,"about_ca_system_score_gemma":0.0002405807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008397327,"about_ca_topic_score_gemma":0.0005220934,"domain_scores_codex":[0.9998962,0.00001433632,0.00001253054,0.00003462673,0.00001800936,0.00002433903],"domain_scores_gemma":[0.9996513,0.00008509972,0.00008327352,0.00005178649,0.00006115735,0.00006733586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004695577,0.00001998233,0.001825359,0.0001378059,0.00002149466,0.0007187062,0.00007591301,0.00007089534,0.9937022,0.0002293903,0.0001225145,0.002606258],"study_design_scores_gemma":[0.00006926035,0.0004967351,0.0302923,0.0000249553,0.0001129127,0.004544848,0.0001112945,0.001036641,0.9595824,0.0004019953,0.003303965,0.00002276735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878708,0.006003228,0.004362145,0.0001988735,0.00007594706,0.0000245156,0.0005559876,0.0001492398,0.000759365],"genre_scores_gemma":[0.9960652,0.0005660556,0.001621298,0.00002595746,0.00003531348,0.00001842408,0.0008175833,0.00001492959,0.0008352622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008838999,"threshold_uncertainty_score":0.002956986,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2267529971","doi":"10.1016/j.dnarep.2015.11.008","title":"Disease-associated repeat instability and mismatch repair","year":2015,"lang":"en","type":"review","venue":"DNA repair","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":209,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; University of Toronto; Canada Research Chairs; Hospital for Sick Children","funders":"","keywords":"PMS2; Biology; MSH2; DNA mismatch repair; Trinucleotide repeat expansion; MSH6; Microsatellite instability; Genetics; DNA repair; Tandem repeat; Genome instability; Somatic cell; MLH1; Germline mutation; Mutation; Homologous recombination; DNA; DNA damage; Gene; Microsatellite; Genome","authors":[{"name":"Monika H.M. Schmidt","is_ca":true},{"name":"Christopher E. Pearson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09436100721801564,"gpt":0.3343758903922536,"spread":0.240014883174238,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005852997,0.001179414,0.001703841,0.002222631,0.0003053594,0.001346267,0.001110396,0.001487888,0.003774967],"category_scores_gemma":[0.0009404258,0.0003107302,0.000451222,0.002227874,0.0006311878,0.001507185,0.0009463712,0.001773847,0.002116496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006379028,"about_ca_system_score_gemma":0.001279296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001297298,"about_ca_topic_score_gemma":0.003065688,"domain_scores_codex":[0.9998154,0.00002689627,0.00003277385,0.00003605763,0.000066271,0.0000225879],"domain_scores_gemma":[0.9996912,0.0001212447,0.00006028394,0.00001041671,0.00007932666,0.00003742968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001041496,0.0000497062,0.0002175355,0.01578268,0.0001061686,0.0003146063,0.00004482233,0.0004761067,0.001543778,0.002809721,0.05637757,0.9221731],"study_design_scores_gemma":[0.00001892608,0.00004972507,0.0006292198,0.003023943,0.0001695955,0.001612481,0.00005562404,0.0001143315,0.0003768459,0.00280657,0.9911181,0.00002454307],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006631126,0.9986318,0.0001314059,0.000192886,0.0002331416,0.000003531099,0.00002293031,0.000007637735,0.0007103548],"genre_scores_gemma":[0.0004636786,0.9982837,0.0001604539,0.0001847392,0.0002966727,0.000004153517,0.00004560648,0.000001602005,0.0005593339],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003774967,"threshold_uncertainty_score":0.01262856,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002421203","doi":"10.1016/j.dnarep.2009.01.013","title":"Regulatory ubiquitylation in response to DNA double-strand breaks","year":2009,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Chromatin; Ubiquitin; Biology; DNA damage; Histone; DNA; DNA repair; Cell biology; Genetics; Gene","authors":[{"name":"Stephanie Panier","is_ca":true},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02385635181025876,"gpt":0.3076773108822811,"spread":0.2838209590720223,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006490206,0.001193583,0.002017418,0.001245104,0.0003445719,0.001352062,0.001256125,0.001489174,0.001438334],"category_scores_gemma":[0.0004004141,0.000519284,0.0003458412,0.001719404,0.0007885123,0.001306962,0.0007226004,0.001407416,0.002112791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008652271,"about_ca_system_score_gemma":0.0006552269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005198115,"about_ca_topic_score_gemma":0.001061369,"domain_scores_codex":[0.9998042,0.00001942268,0.00002839805,0.00005707631,0.00006070483,0.00003027039],"domain_scores_gemma":[0.9998259,0.00005205035,0.00003823088,0.00001055922,0.00004999383,0.00002335276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002398085,0.00006333693,0.0002861498,0.008322529,0.0000893284,0.0005501695,0.00005685482,0.0007613874,0.01882309,0.005274978,0.01861261,0.9469198],"study_design_scores_gemma":[0.00003434273,0.00008022066,0.0017345,0.001060151,0.0001141193,0.002147629,0.00008087359,0.0002660551,0.00825297,0.003722806,0.9824682,0.00003801731],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004506819,0.9971372,0.000705244,0.0001582506,0.0003127556,0.000005542601,0.0000274639,0.00001766037,0.001185209],"genre_scores_gemma":[0.003017902,0.9942783,0.000557354,0.0001630228,0.0002105694,0.000008988574,0.00006950652,0.000003686241,0.001690552],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002017418,"threshold_uncertainty_score":0.006277621,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083693467","doi":"10.1016/j.dnarep.2014.01.009","title":"Non-homologous end joining: Emerging themes and unanswered questions","year":2014,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":143,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Killam Trusts; Alberta Innovates - Health Solutions; National Cancer Institute; National Institutes of Health; Cancer Research Institute","keywords":"Biology; Non-homologous end joining; Homologous chromosome; DNA repair; Homologous recombination; DNA; Genetics; Mechanism (biology); DNA damage; Cell biology; Computational biology; Gene; Physics","authors":[{"name":"Sarvan Kumar Radhakrishnan","is_ca":true},{"name":"Nicholas Jette","is_ca":true},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01663166956827104,"gpt":0.2976492246991894,"spread":0.2810175551309184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00137881,0.0009428208,0.002274727,0.00189111,0.0004312548,0.001974209,0.001716176,0.00182265,0.002953148],"category_scores_gemma":[0.0011648,0.0003363833,0.0004437234,0.002976115,0.001345746,0.002519399,0.001002175,0.002584003,0.002209981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009390236,"about_ca_system_score_gemma":0.001857528,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006963143,"about_ca_topic_score_gemma":0.001540515,"domain_scores_codex":[0.9996941,0.00004931995,0.00004099669,0.00006241063,0.0001111368,0.0000420554],"domain_scores_gemma":[0.999222,0.0003984921,0.00008827727,0.0000223502,0.0001907586,0.00007815326],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009570542,0.00005574446,0.0002198855,0.01929744,0.00007955472,0.0002645542,0.00008601695,0.0003977936,0.002453127,0.007044184,0.02923862,0.9407675],"study_design_scores_gemma":[0.00001306949,0.00005580787,0.0004992819,0.002949756,0.0001011797,0.001529076,0.0001386397,0.0001022806,0.0006567542,0.004515708,0.989415,0.00002341373],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004881318,0.999067,0.0001524563,0.0002348742,0.0001385405,0.000001444841,0.000006825396,0.000004093381,0.0003460619],"genre_scores_gemma":[0.0003280292,0.9989827,0.0001697163,0.0001340652,0.0001629878,0.00000245946,0.00001327534,0.000001012924,0.0002057488],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002953148,"threshold_uncertainty_score":0.009879231,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051550009","doi":"10.1016/s1568-7864(03)00143-5","title":"DNA-PK phosphorylation sites in XRCC4 are not required for survival after radiation or for V(D)J recombination","year":2003,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":128,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Institut pour la Recherche en Santé Publique","keywords":"DNA repair protein XRCC4; DNA ligase; Non-homologous end joining; Biology; DNA repair; V(D)J recombination; Phosphorylation; DNA damage; DNA; Molecular biology; Biochemistry; DNA mismatch repair; Recombination; Gene","authors":[{"name":"Yaping Yu","is_ca":true},{"name":"Wei Wang","is_ca":false},{"name":"Qi Ding","is_ca":false},{"name":"Ruiqiong Ye","is_ca":true},{"name":"Dawn Chen","is_ca":true},{"name":"Dennis Merkle","is_ca":true},{"name":"David C. Schriemer","is_ca":true},{"name":"Katheryn Meek","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02060007138672848,"gpt":0.2661862063020406,"spread":0.2455861349153121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002878137,0.0005919924,0.0005309355,0.000361353,0.0004729315,0.0006241648,0.0005983088,0.0007748618,0.004128136],"category_scores_gemma":[0.0005321329,0.0006627931,0.0006113342,0.0001776059,0.0006899436,0.0007307954,0.0004640664,0.001140201,0.001285896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005176429,"about_ca_system_score_gemma":0.0004703095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008101016,"about_ca_topic_score_gemma":0.001071598,"domain_scores_codex":[0.9997404,0.00004297214,0.0000396891,0.00006054971,0.00004975081,0.00006670835],"domain_scores_gemma":[0.9990959,0.0001894663,0.0002883594,0.0001707867,0.00005451762,0.0002009689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005869619,0.0000376147,0.0006036234,0.00004308621,0.0000166948,0.0001459703,0.00001409947,0.00007282897,0.9972939,0.0002059224,0.00006778412,0.0009116411],"study_design_scores_gemma":[0.00005236261,0.000177691,0.01271583,0.00001016042,0.00003188913,0.001160875,0.0000306142,0.0005281944,0.9836408,0.0001431512,0.001494556,0.00001379911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939056,0.00114054,0.002769342,0.0001701164,0.00008482827,0.00003043632,0.0005056548,0.0001463028,0.00124711],"genre_scores_gemma":[0.9954048,0.000215879,0.0012523,0.00006719904,0.00001514229,0.00001953257,0.001142294,0.00006110036,0.001821725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004128136,"threshold_uncertainty_score":0.01380998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162593589","doi":"10.1016/j.dnarep.2014.02.009","title":"Structural insights into NHEJ: Building up an integrated picture of the dynamic DSB repair super complex, one component and interaction at a time","year":2014,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Cancer Foundation; University of Calgary","funders":"National Cancer Institute; National Institutes of Health","keywords":"DNA repair protein XRCC4; Ku80; Ku70; Biology; DNA ligase; DNA repair; Non-homologous end joining; Cell biology; DNA; Molecular biology; DNA mismatch repair; Genetics; DNA-binding protein; Gene; Transcription factor","authors":[{"name":"Gareth J. Williams","is_ca":false},{"name":"Michal Hammel","is_ca":false},{"name":"Sarvan Kumar Radhakrishnan","is_ca":true},{"name":"Dale A. Ramsden","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01966171553365124,"gpt":0.289597354909617,"spread":0.2699356393759657,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005974031,0.001014415,0.001310822,0.001280596,0.0002573384,0.001045128,0.0013019,0.001355234,0.001847659],"category_scores_gemma":[0.0005945462,0.0003978003,0.0003683799,0.001798217,0.0008342838,0.002236777,0.0008009715,0.002232792,0.00184456],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001006827,"about_ca_system_score_gemma":0.001442941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001070076,"about_ca_topic_score_gemma":0.001768343,"domain_scores_codex":[0.9998735,0.00001252496,0.00001316448,0.00002579383,0.00005685963,0.00001821026],"domain_scores_gemma":[0.9997768,0.00007531338,0.00003400913,0.0000100967,0.00007103811,0.00003281593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009014828,0.00005087392,0.0001204114,0.0127552,0.00008145663,0.0001563275,0.00005705227,0.0008361579,0.009494145,0.01141238,0.04256169,0.9223841],"study_design_scores_gemma":[0.00001035296,0.00003911124,0.0002903106,0.000965265,0.00005979208,0.0005785589,0.0000329032,0.0001487867,0.001839547,0.003991802,0.9920219,0.00002173392],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001165102,0.9981952,0.0004871644,0.0003858966,0.0002116319,0.000002384327,0.00002107985,0.00001168331,0.0005684721],"genre_scores_gemma":[0.0005010719,0.9984134,0.0003867504,0.0001621059,0.000122913,0.000002257217,0.00003367802,0.000001939157,0.0003758025],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001847659,"threshold_uncertainty_score":0.007305086,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069964111","doi":"10.1016/j.dnarep.2008.06.015","title":"DNA-PK and ATM phosphorylation sites in XLF/Cernunnos are not required for repair of DNA double strand breaks","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; DNA; Phosphorylation; DNA repair; Cell biology; Genetics","authors":[{"name":"Yang Yu","is_ca":false},{"name":"Brandi L. Mahaney","is_ca":true},{"name":"Kentarô Yano","is_ca":false},{"name":"Runquan Ye","is_ca":true},{"name":"Shengyun Fang","is_ca":true},{"name":"Pamela S. Douglas","is_ca":true},{"name":"Di Chen","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02277534771782088,"gpt":0.2513756360148669,"spread":0.228600288297046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002140583,0.0004492816,0.00041484,0.0004822088,0.0003547441,0.0004153247,0.0004967499,0.0006260975,0.003264194],"category_scores_gemma":[0.0003796025,0.0003572079,0.0003808503,0.0001531908,0.0006562931,0.0005111466,0.0003441968,0.000688549,0.000989582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005906375,"about_ca_system_score_gemma":0.0003005975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008017123,"about_ca_topic_score_gemma":0.001137366,"domain_scores_codex":[0.9998375,0.00001395572,0.00002497632,0.00004468105,0.00004341958,0.0000353732],"domain_scores_gemma":[0.9992123,0.00009117463,0.0003599445,0.00009445484,0.00003939638,0.0002027375],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004158593,0.00002909374,0.0008970401,0.0000414695,0.000009503407,0.0002839515,0.00001909829,0.00007882506,0.9970441,0.0001653893,0.00004935071,0.0009663023],"study_design_scores_gemma":[0.0001001469,0.000171123,0.03920111,0.00001425484,0.00003689911,0.002499652,0.00007561682,0.0009986409,0.9536409,0.000304918,0.002935103,0.0000216219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965956,0.0004538733,0.001705432,0.00009125496,0.00005371381,0.00001157631,0.0003896976,0.0001140008,0.0005849035],"genre_scores_gemma":[0.9961001,0.0001274864,0.001174356,0.0000591478,0.00001467337,0.00001707904,0.0009355203,0.00007298486,0.001498661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003264194,"threshold_uncertainty_score":0.01091981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049018115","doi":"10.1016/j.dnarep.2007.10.008","title":"APLF (C2orf13) facilitates nonhomologous end-joining and undergoes ATM-dependent hyperphosphorylation following ionizing radiation","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Lunenfeld-Tanenbaum Research Institute; University Health Network; Ontario Institute for Cancer Research; University of Toronto","funders":"","keywords":"DNA repair protein XRCC4; DNA ligase; Non-homologous end joining; Biology; DNA repair; DNA; DNA damage; Molecular biology; Cell biology; Ku80; Ubiquitin ligase; XRCC1; Genetics; DNA-binding protein; Nucleotide excision repair; Ubiquitin; Gene; Transcription factor","authors":[{"name":"Chloe J. Macrae","is_ca":true},{"name":"Richard McCulloch","is_ca":true},{"name":"Jarkko Ylanko","is_ca":true},{"name":"Daniel Durocher","is_ca":true},{"name":"Christine Koch","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01223956392231121,"gpt":0.2234979047624647,"spread":0.2112583408401535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003557069,0.0004278108,0.0002749707,0.0005546263,0.0004143181,0.0003793036,0.0004548979,0.0005090362,0.004069284],"category_scores_gemma":[0.0003849675,0.0002480302,0.0004963455,0.0002190115,0.0003958015,0.0003533958,0.0004918543,0.0007808454,0.0008582695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004940063,"about_ca_system_score_gemma":0.0002401838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008172644,"about_ca_topic_score_gemma":0.0009425316,"domain_scores_codex":[0.9997548,0.00003516229,0.00001909551,0.00005741546,0.00005911184,0.00007439607],"domain_scores_gemma":[0.9996799,0.00005401525,0.0001053141,0.00003575437,0.00002905483,0.00009590246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003398001,0.00003199383,0.0008279138,0.00002671454,0.00001071347,0.0004304374,0.00001715579,0.00005567534,0.9966283,0.0001061299,0.0001666264,0.001358558],"study_design_scores_gemma":[0.00002658812,0.0001273283,0.03154118,0.000006071961,0.00001352072,0.001818135,0.00004687389,0.0005665274,0.9639536,0.0001264719,0.001764139,0.000009592512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964167,0.0005770907,0.001651417,0.00009123998,0.00004228571,0.00001262986,0.0002110871,0.00007902874,0.0009185255],"genre_scores_gemma":[0.9969429,0.0001358966,0.0005029943,0.00003901143,0.00001195227,0.00001783199,0.000506995,0.00002402258,0.001818331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004069284,"threshold_uncertainty_score":0.01361316,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039958529","doi":"10.1016/j.dnarep.2005.10.010","title":"Suppression of genomic instability by SLX5 and SLX8 in Saccharomyces cerevisiae","year":2005,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie – Hans-Knöll-Institut; National Cancer Institute","keywords":"Biology; Genome instability; DNA replication; Saccharomyces cerevisiae; DNA damage; Control of chromosome duplication; DNA re-replication; Genetics; Origin recognition complex; DNA repair; Cell cycle; Checkpoint Kinase 2; Chromosome instability; DNA; Mutant; Cell biology; Gene; Cell cycle checkpoint; Eukaryotic DNA replication; Chromosome","authors":[{"name":"Chaoying Zhang","is_ca":true},{"name":"Tania Michelle Roberts","is_ca":true},{"name":"Jay Yang","is_ca":true},{"name":"Ridhdhi Desai","is_ca":true},{"name":"Grant W. Brown","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005630018553899851,"gpt":0.2281829969703798,"spread":0.22255297841648,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001850083,0.0006400302,0.0003233461,0.0003957891,0.0001924111,0.0005615515,0.0003705049,0.0002745651,0.001227121],"category_scores_gemma":[0.0001870019,0.0002201588,0.0003336485,0.0002614445,0.000267632,0.0002046819,0.0004638194,0.0005105211,0.0004096377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003934717,"about_ca_system_score_gemma":0.0002275054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001574878,"about_ca_topic_score_gemma":0.001407592,"domain_scores_codex":[0.9998558,0.00002690161,0.00003023759,0.00002561179,0.00003713191,0.00002420885],"domain_scores_gemma":[0.999741,0.00006191981,0.00007352782,0.00004095391,0.00002068292,0.00006183696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001878596,0.00001964005,0.0002037741,0.00002021562,0.000006594672,0.00007445693,0.00001577161,0.0001750607,0.9981749,0.0001325857,0.00002126027,0.0009678106],"study_design_scores_gemma":[0.00001592177,0.0001180934,0.001474174,0.000003328404,0.0000130737,0.0001221804,0.00004057921,0.001522012,0.9959983,0.00004413388,0.000643131,0.000005181744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969954,0.0005468971,0.001554019,0.00005770634,0.00001651302,0.000006995975,0.0002386604,0.0001176562,0.0004661302],"genre_scores_gemma":[0.9970607,0.0001991744,0.0008244764,0.00001823927,0.000005592088,0.000008732048,0.0003490793,0.00004504041,0.001488833],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001574878,"threshold_uncertainty_score":0.004105091,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2072209077","doi":"10.1016/j.dnarep.2005.05.003","title":"DNA-PK-dependent phosphorylation of Ku70/80 is not required for non-homologous end joining","year":2005,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Harvard University","keywords":"Ku70; Ku80; Biology; Phosphorylation; Molecular biology; Protein kinase A; Protein phosphorylation; Biochemistry; Non-homologous end joining; Autophagy-related protein 13; DNA repair; DNA-PKcs; Phosphatase; DNA; DNA-binding protein","authors":[{"name":"Pauline Douglas","is_ca":true},{"name":"Shikha Gupta","is_ca":false},{"name":"Nick Morrice","is_ca":false},{"name":"Katheryn Meek","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0139185924181946,"gpt":0.2563915821644892,"spread":0.2424729897462946,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002948784,0.0004805319,0.0004908948,0.0003963327,0.0003817855,0.0006782984,0.0006632974,0.0004309753,0.00258547],"category_scores_gemma":[0.0006051579,0.0004829293,0.0004268413,0.000174689,0.0004878313,0.0007704525,0.0003986959,0.0009056437,0.001023636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006879259,"about_ca_system_score_gemma":0.0005116918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006257297,"about_ca_topic_score_gemma":0.0008693654,"domain_scores_codex":[0.9997117,0.00003872957,0.00003063658,0.00005977862,0.00007791904,0.0000812201],"domain_scores_gemma":[0.9992533,0.0001580068,0.0001824172,0.0001484551,0.00006392402,0.0001938881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003170248,0.00005338067,0.0004182471,0.00004154929,0.00000985118,0.0001604102,0.00001364686,0.0000545078,0.9977514,0.0002431787,0.00007146019,0.0008653349],"study_design_scores_gemma":[0.00003432088,0.0001388608,0.01465492,0.00001030142,0.00001967329,0.001189099,0.00003782133,0.0009203108,0.9810192,0.0002296855,0.001735218,0.00001065401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925491,0.001667491,0.002396581,0.0001691698,0.00008460018,0.00003658951,0.0005025427,0.000128884,0.002465144],"genre_scores_gemma":[0.9941962,0.0002901353,0.001319714,0.00005473914,0.00001258018,0.00002654555,0.001455592,0.00004053446,0.002603939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00258547,"threshold_uncertainty_score":0.00864929,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967291554","doi":"10.1016/j.dnarep.2011.07.012","title":"53BP1-mediated DNA double strand break repair: Insert bad pun here","year":2011,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Homologous recombination; DNA repair; Chromatin; DNA; DNA damage; Immunoglobulin class switching; Telomere; Cell biology; Molecular biology; Genetics; Antibody; B cell","authors":[{"name":"Angela T. Noon","is_ca":false},{"name":"Aaron A. Goodarzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02934705448000121,"gpt":0.2808571775271624,"spread":0.2515101230471612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004066905,0.0008823663,0.001376401,0.0007878449,0.0003053224,0.001149437,0.0008147582,0.001355832,0.003352561],"category_scores_gemma":[0.0004097155,0.0003265961,0.0004332318,0.0007243442,0.000592145,0.001602399,0.00063863,0.002509761,0.004839052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005266738,"about_ca_system_score_gemma":0.0006587972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004637725,"about_ca_topic_score_gemma":0.000809784,"domain_scores_codex":[0.999853,0.00001714446,0.00001915835,0.00004095561,0.0000451936,0.00002444757],"domain_scores_gemma":[0.9998647,0.00003702905,0.00002212472,0.00001233469,0.00004484564,0.00001888602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002519564,0.00007284077,0.0001891408,0.00838431,0.0000634055,0.0004639516,0.00004358748,0.0002238994,0.02207369,0.005793234,0.04935018,0.9130899],"study_design_scores_gemma":[0.00002896822,0.0001218122,0.0005717631,0.0007145353,0.0001106561,0.003028139,0.00004045405,0.0001066396,0.01515015,0.002767221,0.9773301,0.0000295274],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008052936,0.9872233,0.002395397,0.00219168,0.00254686,0.00001857561,0.0001070493,0.00008169909,0.004630198],"genre_scores_gemma":[0.008034964,0.9754466,0.001926315,0.001905897,0.0008317441,0.00002213478,0.0002737578,0.00002658647,0.011532],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003352561,"threshold_uncertainty_score":0.01121539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2082749639","doi":"10.1016/j.dnarep.2014.03.022","title":"The cutting edges in DNA repair, licensing, and fidelity: DNA and RNA repair nucleases sculpt DNA to measure twice, cut once","year":2014,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; AP site; DNA repair; Nucleotide excision repair; DNA damage; Base excision repair; Endonuclease; DNA; Replication protein A; DNA mismatch repair; DNA replication; Genetics; Gene; DNA-binding protein; Transcription factor","authors":[{"name":"Susan E. Tsutakawa","is_ca":false},{"name":"Julien Lafrance‐Vanasse","is_ca":false},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0237316110624638,"gpt":0.2866149891472978,"spread":0.262883378084834,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001388974,0.001438784,0.001955793,0.00184929,0.0004989483,0.001781354,0.002031873,0.002906564,0.00198874],"category_scores_gemma":[0.001266869,0.0008450517,0.000542663,0.002971581,0.002424682,0.003252316,0.001395759,0.004204873,0.002848739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001657025,"about_ca_system_score_gemma":0.001512633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001636203,"about_ca_topic_score_gemma":0.002295136,"domain_scores_codex":[0.999519,0.00006265313,0.00004867406,0.0001022152,0.0002089493,0.00005838665],"domain_scores_gemma":[0.9993969,0.000272428,0.00009182479,0.00002833212,0.0001498768,0.00006064296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000819884,0.00004366064,0.000121787,0.006974057,0.00004697501,0.0001043954,0.00006460764,0.0005368468,0.005558976,0.01604057,0.03209472,0.9383314],"study_design_scores_gemma":[0.00001193293,0.00003955535,0.0002513863,0.0009089171,0.00003813783,0.0005424973,0.00003875556,0.0001231074,0.002800424,0.006154068,0.9890618,0.00002940079],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0000725835,0.9979539,0.0007567469,0.0002731605,0.0002265127,0.000003082203,0.00001183603,0.00001423547,0.0006878995],"genre_scores_gemma":[0.0008863785,0.9965372,0.0008507039,0.0003585684,0.0002110021,0.000008736123,0.0000352705,0.000005336507,0.001106757],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002906564,"threshold_uncertainty_score":0.01202261,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981210505","doi":"10.1016/s1568-7864(02)00110-6","title":"Analysis of mouse Rad54 expression and its implications for homologous recombination","year":2002,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Cancer Research Society","keywords":"RAD51; Biology; Homologous recombination; DNA; Molecular biology; Cell biology; Biophysics; Genetics","authors":[{"name":"Jeroen Essers","is_ca":false},{"name":"Rudi W. Hendriks","is_ca":false},{"name":"Joanna Wesoły","is_ca":false},{"name":"Cecile Beerens","is_ca":false},{"name":"Bep Smit","is_ca":false},{"name":"Jan H.J. Hoeijmakers","is_ca":false},{"name":"Claire Wyman","is_ca":false},{"name":"Mies L. G. Dronkert","is_ca":false},{"name":"Roland Kanaar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01834999321355806,"gpt":0.2590994664204856,"spread":0.2407494732069276,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003436017,0.0005068473,0.0003360209,0.001114222,0.0004036095,0.0006519995,0.0007001895,0.0006487549,0.002419936],"category_scores_gemma":[0.000382221,0.0004187382,0.0005250068,0.0004853193,0.000523366,0.0007103027,0.00034192,0.000860016,0.0008507132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006117008,"about_ca_system_score_gemma":0.000230671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007472913,"about_ca_topic_score_gemma":0.0007430961,"domain_scores_codex":[0.9997721,0.00003942361,0.00002983611,0.00005479333,0.00003348162,0.00007033382],"domain_scores_gemma":[0.9996464,0.0001039398,0.00008736407,0.00006599323,0.00003745586,0.00005883099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002113177,0.00002161966,0.0002769558,0.00002906631,0.000005595578,0.000100503,0.00001533991,0.00003903321,0.9970106,0.001109608,0.00002286186,0.001157453],"study_design_scores_gemma":[0.00002056765,0.0001176055,0.004555059,0.0000126894,0.00003979101,0.0005811051,0.00004181468,0.0003975316,0.9910556,0.0003588242,0.00281375,0.000005572924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9779893,0.005926028,0.01016835,0.0003858524,0.00006410054,0.00003192476,0.0006961643,0.0001446066,0.004593668],"genre_scores_gemma":[0.9795197,0.002708217,0.006510648,0.0001046247,0.00003058148,0.0000698336,0.001444909,0.000107501,0.009504025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002419936,"threshold_uncertainty_score":0.008095562,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001330742","doi":"10.1016/j.dnarep.2009.05.003","title":"Tyrosyl-DNA phosphodiesterase and the repair of 3′-phosphoglycolate-terminated DNA double-strand breaks","year":2009,"lang":"en","type":"article","venue":"DNA repair","topic":"Cancer therapeutics and mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; National Institute on Aging; National Institutes of Health","keywords":"Autophosphorylation; DNA; Biology; Phosphorylation; DNA damage; Molecular biology; DNA repair; Phosphodiesterase; Non-homologous end joining; Biochemistry; Cell biology; Enzyme; Protein kinase A","authors":[{"name":"Tong Zhou","is_ca":false},{"name":"Konstantin Akopiants","is_ca":false},{"name":"Susovan Mohapatra","is_ca":false},{"name":"Peck-Sun Lin","is_ca":false},{"name":"Kristoffer Valerie","is_ca":false},{"name":"Dale A. Ramsden","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true},{"name":"Lawrence F. Povirk","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007888304150895488,"gpt":0.2412130761765044,"spread":0.2333247720256089,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003530421,0.0004265682,0.0002253143,0.0003374675,0.0001973389,0.0003823593,0.0002345812,0.0006971137,0.0009021156],"category_scores_gemma":[0.0002224191,0.0002291123,0.0001977863,0.0001564938,0.0002749672,0.0003151733,0.0002024583,0.0005250651,0.0002135287],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004901014,"about_ca_system_score_gemma":0.0003420995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009716807,"about_ca_topic_score_gemma":0.001106593,"domain_scores_codex":[0.9999022,0.00002607023,0.000006559704,0.00001383745,0.00001871232,0.00003259313],"domain_scores_gemma":[0.9999174,0.00002132559,0.00002831748,0.000006711804,0.000007121576,0.00001898732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001877384,0.0001299603,0.0008657477,0.000149873,0.00003875829,0.0006335893,0.00005277475,0.0009071418,0.9771873,0.002825839,0.0003051481,0.01502645],"study_design_scores_gemma":[0.0001020302,0.001089312,0.006000604,0.0000172825,0.00004014809,0.001121865,0.0000602423,0.001741374,0.9812184,0.001159284,0.007436375,0.00001311275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9289386,0.05997886,0.004875905,0.001008477,0.0001831533,0.00004302688,0.0001652762,0.00006382929,0.004742912],"genre_scores_gemma":[0.9880262,0.007697921,0.0007315323,0.00009154354,0.00003661544,0.00001093277,0.000120668,0.000006071662,0.003278622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009716807,"threshold_uncertainty_score":0.003555954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965179844","doi":"10.1016/j.dnarep.2013.04.006","title":"The role of arginine methylation in the DNA damage response","year":2013,"lang":"en","type":"review","venue":"DNA repair","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; McGill University","funders":"","keywords":"Protein arginine methyltransferase 5; Biology; Methyltransferase; Epigenetics; Methylation; Epigenomics; DNA methylation; Arginine; Histone; DNA damage; DNA repair; DNA; Cell biology; Biochemistry; Histone methyltransferase; Genetics; Gene expression; Gene; Amino acid","authors":[{"name":"Yannick Auclair","is_ca":true},{"name":"Stéphane Richard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01476319439048827,"gpt":0.2956405353934511,"spread":0.2808773410029629,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006813256,0.001033088,0.001412248,0.001189585,0.0003291715,0.001137932,0.001325981,0.001360706,0.001798351],"category_scores_gemma":[0.0005177282,0.0003185354,0.0003467374,0.001974677,0.001149269,0.001403231,0.001007966,0.001972144,0.001490687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009554369,"about_ca_system_score_gemma":0.001210742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001247212,"about_ca_topic_score_gemma":0.00191939,"domain_scores_codex":[0.9998185,0.00002241051,0.00002232531,0.00004605842,0.00006276323,0.00002794968],"domain_scores_gemma":[0.9997573,0.00008799717,0.00004545068,0.00001037468,0.0000632629,0.00003558915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001352569,0.00004578376,0.0002254764,0.009764183,0.00008321593,0.0003484016,0.00005335534,0.0006543162,0.010615,0.006658532,0.02887537,0.9425412],"study_design_scores_gemma":[0.00001631168,0.00005649875,0.0007195608,0.0008314806,0.00007871058,0.00103796,0.00005270709,0.0001429204,0.002295727,0.00371834,0.9910253,0.0000243771],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001101171,0.9984136,0.000289068,0.0002560932,0.0002215512,0.000002076014,0.00001325719,0.000007026159,0.0006872201],"genre_scores_gemma":[0.0009303061,0.9979449,0.0002253042,0.0001384345,0.0002459238,0.000003167753,0.00002342622,0.00000152609,0.0004870357],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001798351,"threshold_uncertainty_score":0.006932199,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996083284","doi":"10.1016/j.dnarep.2008.05.005","title":"Mouse but not human embryonic stem cells are deficient in rejoining of ionizing radiation-induced DNA double-strand breaks","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute","funders":"National Cancer Institute; Canadian Institutes of Health Research; Stem Cell Network","keywords":"Biology; Ku70; Ku80; Homologous recombination; Embryonic stem cell; DNA damage; Molecular biology; DNA repair; Wortmannin; DNA; DNA-PKcs; Cell biology; Non-homologous end joining; Genetics; Kinase; Gene; DNA-binding protein; Phosphatidylinositol","authors":[{"name":"Carmen A. Bañuelos","is_ca":false},{"name":"Judit P. Banáth","is_ca":false},{"name":"Susan H. MacPhail","is_ca":false},{"name":"Jin Zhao","is_ca":false},{"name":"CJ Eaves","is_ca":true},{"name":"Michael D. O’Connor","is_ca":true},{"name":"Peter M. Lansdorp","is_ca":true},{"name":"Peggy L. Olive","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03837066740589431,"gpt":0.2684238595056322,"spread":0.2300531920997379,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006699114,0.001032263,0.0008683926,0.001257675,0.0002215938,0.0009902376,0.0006025511,0.0007516888,0.006456188],"category_scores_gemma":[0.0004194079,0.0005915615,0.0006521567,0.0005354249,0.000586005,0.0004689448,0.0004740472,0.001067324,0.002159591],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000213636,"about_ca_system_score_gemma":0.0003277839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005075471,"about_ca_topic_score_gemma":0.0007169563,"domain_scores_codex":[0.9994614,0.00007134874,0.00009647264,0.00009916842,0.000176902,0.00009468557],"domain_scores_gemma":[0.9992619,0.0001525588,0.0002251888,0.0001179998,0.00006356033,0.0001788074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001227993,0.00001610098,0.000235097,0.00004119309,0.00002407901,0.0000899829,0.00001630419,0.00002704948,0.9984471,0.0002090763,0.00005007844,0.000721121],"study_design_scores_gemma":[0.00003336815,0.0001729758,0.005815472,0.00001381839,0.00009748083,0.001442167,0.00003842555,0.0003453989,0.9868374,0.00013951,0.005054621,0.000009130186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9799631,0.00475433,0.008579435,0.0002468095,0.0001262072,0.00007101444,0.002502571,0.0005128758,0.00324362],"genre_scores_gemma":[0.9744485,0.002506248,0.005227023,0.0001143728,0.00002462626,0.00007262143,0.006363817,0.0002263298,0.01101647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006456188,"threshold_uncertainty_score":0.0215981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2883745175","doi":"10.1016/j.dnarep.2018.07.005","title":"DNA damage response and repair in colorectal cancer: Defects, regulation and therapeutic implications","year":2018,"lang":"en","type":"review","venue":"DNA repair","topic":"Cancer Mechanisms and Therapy","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Acadia University","funders":"","keywords":"DNA damage; Biology; DNA repair; Colorectal cancer; Cancer research; Signal transduction; Cancer; Cell cycle checkpoint; Apoptosis; Kinase; Genome instability; Cell cycle; DNA mismatch repair; Bioinformatics; Cell biology; DNA; Computational biology; Genetics","authors":[{"name":"Mohammad Mirza‐Aghazadeh‐Attari","is_ca":false},{"name":"Saber Ghazizadeh Darband","is_ca":false},{"name":"Mojtaba Kaviani","is_ca":true},{"name":"Ainaz Mihanfar","is_ca":false},{"name":"Javad Aghazadeh Attari","is_ca":false},{"name":"Bahman Yousefi","is_ca":false},{"name":"Maryam Majidinia","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03612270118145772,"gpt":0.3440194544074142,"spread":0.3078967532259565,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006479865,0.0006228375,0.001123683,0.001624326,0.0002439412,0.001201844,0.000824113,0.001029912,0.002467754],"category_scores_gemma":[0.0009857068,0.0002085575,0.0003785332,0.00211888,0.0005815521,0.001187002,0.0007667073,0.001575421,0.001104724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000606349,"about_ca_system_score_gemma":0.001426608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001003913,"about_ca_topic_score_gemma":0.001826561,"domain_scores_codex":[0.9998071,0.00002958091,0.00002784557,0.00003653633,0.00007513745,0.00002389183],"domain_scores_gemma":[0.9995969,0.000185626,0.00006889949,0.00001148542,0.00009881404,0.00003833979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001006408,0.00004586904,0.0003443589,0.01974655,0.00008917618,0.0002099066,0.00006877897,0.0004470923,0.002339252,0.004896671,0.02825732,0.9434544],"study_design_scores_gemma":[0.00001382946,0.00006715289,0.0009862913,0.003208575,0.0001465922,0.001259835,0.00009214988,0.00008939065,0.0005872452,0.002806418,0.9907213,0.00002119219],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008900811,0.9989964,0.00009097171,0.0002686313,0.0001286081,0.000001940235,0.00001843841,0.000004591707,0.0004014185],"genre_scores_gemma":[0.0005980916,0.9987512,0.0001150865,0.000117751,0.0001195492,0.00000209203,0.00002042116,8.179983e-7,0.0002749788],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002467754,"threshold_uncertainty_score":0.008255422,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990549862","doi":"10.1016/j.dnarep.2004.03.041","title":"Biochemical characterization of the ataxia-telangiectasia mutated (ATM) protein from human cells","year":2004,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Ataxia-telangiectasia; Phosphorylation; Biochemistry; Nuclear protein; Kinase; Molecular biology; DNA damage; Serine; DNA repair; DNA; Transcription factor; Gene","authors":[{"name":"Aaron A. Goodarzi","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006116319882416436,"gpt":0.2104993952845624,"spread":0.204383075402146,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001875433,0.0005539841,0.0002497192,0.0003716366,0.0003369607,0.0004131562,0.0002583641,0.0002811154,0.00123195],"category_scores_gemma":[0.000279941,0.0002029283,0.00038002,0.0003467814,0.0001823736,0.000287679,0.0001963046,0.0006095559,0.0009919779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002645648,"about_ca_system_score_gemma":0.000310908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001296945,"about_ca_topic_score_gemma":0.0008508352,"domain_scores_codex":[0.9999341,0.000009847387,0.000009970899,0.00001590964,0.00001828407,0.00001194018],"domain_scores_gemma":[0.9998325,0.00003718923,0.00002025869,0.00002587738,0.00004647152,0.00003768173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001459242,0.0000224974,0.0002945256,0.00006879694,0.000009959444,0.0001705543,0.000037978,0.00005179218,0.9973061,0.0001755204,0.0001092885,0.001607134],"study_design_scores_gemma":[0.00004520723,0.0003558811,0.0200347,0.00001760102,0.00009426734,0.003562273,0.0001234701,0.0007785493,0.9518164,0.0003595393,0.022792,0.00002014391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9658223,0.01183803,0.01267804,0.0009939914,0.0002119358,0.00008709845,0.003345938,0.0001635446,0.004858986],"genre_scores_gemma":[0.9522049,0.008645867,0.01050078,0.0002554997,0.0001239937,0.00006386511,0.01737506,0.00007320104,0.01075685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001296945,"threshold_uncertainty_score":0.004121244,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992383407","doi":"10.1016/j.dnarep.2015.02.004","title":"Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs","year":2015,"lang":"en","type":"article","venue":"DNA repair","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; University of British Columbia; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Poly ADP ribose polymerase; Biology; ADP-ribosylation; DNA repair; DNA damage; Polymerase; Biochemistry; Histone; DNA; Enzyme; NAD+ kinase","authors":[{"name":"Jean‐Philippe Gagné","is_ca":true},{"name":"Chantal Éthier","is_ca":true},{"name":"Daniel Defoy","is_ca":false},{"name":"Sylvie Bourassa","is_ca":false},{"name":"Marie-France Langelier","is_ca":false},{"name":"Amanda A. Riccio","is_ca":false},{"name":"John M. Pascal","is_ca":false},{"name":"Kyung‐Mee Moon","is_ca":true},{"name":"Leonard J. Foster","is_ca":true},{"name":"Zhibin Ning","is_ca":true},{"name":"Daniel Figeys","is_ca":true},{"name":"Arnaud Droit","is_ca":false},{"name":"Guy G. Poirier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09189252791174868,"gpt":0.3432415739740129,"spread":0.2513490460622643,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004193266,0.0004498265,0.0002808855,0.0004844787,0.0003414687,0.0004990732,0.0004372427,0.0004709966,0.002236228],"category_scores_gemma":[0.0004352906,0.0002456579,0.0003750426,0.0008491409,0.0002904066,0.0003108081,0.0001633047,0.001004506,0.0006708621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003919984,"about_ca_system_score_gemma":0.0002370359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005180318,"about_ca_topic_score_gemma":0.001143265,"domain_scores_codex":[0.9994996,0.00009707492,0.00002751075,0.0001536913,0.000150384,0.00007178508],"domain_scores_gemma":[0.9996118,0.0001004916,0.00008350243,0.00007337319,0.00009312412,0.00003773939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001728107,0.00003720959,0.0001803422,0.00003806475,0.00001246377,0.00001058609,0.00001634508,0.0002702326,0.9965538,0.0001698319,0.00009476019,0.002443518],"study_design_scores_gemma":[0.000007697591,0.0001219105,0.002507798,0.000002196839,0.00001625321,0.00005197691,0.00001568296,0.001690833,0.9942449,0.00008907499,0.001246162,0.000005532388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8540674,0.005339268,0.1268458,0.0002471559,0.0001277125,0.0001442997,0.006267232,0.0006747455,0.006286436],"genre_scores_gemma":[0.9380239,0.002595729,0.0432926,0.0001515976,0.00004075582,0.0001768597,0.005901889,0.0001333082,0.009683325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002236228,"threshold_uncertainty_score":0.007480919,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2030255629","doi":"10.1016/j.dnarep.2010.10.003","title":"The endonuclease domain of MutL interacts with the β sliding clamp","year":2010,"lang":"en","type":"article","venue":"DNA repair","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"National Institute of Environmental Health Sciences","keywords":"DNA mismatch repair; Biology; Processivity; Endonuclease; Proofreading; DNA repair; Genetics; DNA replication; Cell biology; DNA polymerase; DNA","authors":[{"name":"Monica C. Pillon","is_ca":false},{"name":"Jeffrey H Miller","is_ca":false},{"name":"Alba Guarné","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006493128943178172,"gpt":0.2401673108561717,"spread":0.2336741819129935,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002712094,0.0003039388,0.0002022997,0.0002299459,0.0003129549,0.0006817449,0.0002738498,0.0003520545,0.002236409],"category_scores_gemma":[0.0004376486,0.0002699338,0.0002600577,0.0001201413,0.0002256613,0.0004037357,0.0005256137,0.0004835424,0.001301921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005029461,"about_ca_system_score_gemma":0.0001674414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004527533,"about_ca_topic_score_gemma":0.0004669368,"domain_scores_codex":[0.9998703,0.00002185862,0.000008585663,0.00003114919,0.00003554863,0.00003256819],"domain_scores_gemma":[0.9998124,0.00003363348,0.00006341026,0.00001779728,0.00001903028,0.00005373026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002252992,0.00003541398,0.002485365,0.00006535301,0.00002189467,0.0002394584,0.00004212941,0.0001539401,0.9907635,0.0007369166,0.0003480288,0.004882639],"study_design_scores_gemma":[0.00004320079,0.00009146822,0.01461253,0.00002188684,0.00002511811,0.001047662,0.0001031977,0.003908189,0.9684595,0.0004052092,0.01126844,0.00001362933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882284,0.002955402,0.005433483,0.0002754955,0.00006062329,0.00001304127,0.00006670394,0.0001298656,0.002836913],"genre_scores_gemma":[0.9954759,0.0003559938,0.001595644,0.00009629582,0.00001549437,0.000005228654,0.000129972,0.00001806879,0.002307341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002236409,"threshold_uncertainty_score":0.007481515,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063702398","doi":"10.1016/j.dnarep.2003.10.014","title":"The isoflavonoids genistein and quercetin activate different stress signaling pathways as shown by analysis of site-specific phosphorylation of ATM, p53 and histone H2AX","year":2003,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Cancer Foundation","keywords":"Phosphorylation; Genistein; Biology; DNA damage; Serine; Histone; Kinase; Histone H3; Cell biology; Molecular biology; Biochemistry; DNA","authors":[{"name":"Ruiqiong Ye","is_ca":true},{"name":"Aaron A. Goodarzi","is_ca":true},{"name":"Ebba U. Kurz","is_ca":true},{"name":"Shinichi Saito","is_ca":false},{"name":"Yuichiro Higashimoto","is_ca":false},{"name":"Martin F. Lavin","is_ca":false},{"name":"Ettore Appella","is_ca":false},{"name":"Carl W. Anderson","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007411236585493317,"gpt":0.2202483483337177,"spread":0.2128371117482244,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001466649,0.0006314947,0.0002950105,0.0003867396,0.0001894633,0.0002729536,0.0001700688,0.0003491975,0.0009588749],"category_scores_gemma":[0.000126872,0.0001917241,0.0004144876,0.0002492625,0.0002495383,0.0002795612,0.0001665282,0.0003743164,0.0001665062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003014872,"about_ca_system_score_gemma":0.0001225211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009405252,"about_ca_topic_score_gemma":0.001238189,"domain_scores_codex":[0.9998686,0.00002599976,0.000007310155,0.00002225695,0.00003219644,0.0000436343],"domain_scores_gemma":[0.9998739,0.0000261457,0.0000375695,0.00001402938,0.00001874389,0.00002972066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003186347,0.00001574091,0.0003062579,0.00001681818,0.0000118966,0.00002468134,0.0000121394,0.00003031312,0.9984961,0.00008935499,0.00001425251,0.0006638214],"study_design_scores_gemma":[0.00005423314,0.0005949641,0.03466183,0.00000417507,0.00006278251,0.0002557132,0.00005106811,0.0004236555,0.9627089,0.000219978,0.0009517696,0.0000108604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918311,0.003337375,0.003042101,0.0001120993,0.00003138,0.0000266826,0.0004231483,0.00004932089,0.001146869],"genre_scores_gemma":[0.9945186,0.001643796,0.001304549,0.00009147501,0.00001226656,0.00003251489,0.0008189588,0.00001123214,0.001566771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009588749,"threshold_uncertainty_score":0.003207803,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994894991","doi":"10.1016/j.dnarep.2008.11.018","title":"Delocalization of nucleolar poly(ADP-ribose) polymerase-1 to the nucleoplasm and its novel link to cellular sensitivity to DNA damage","year":2009,"lang":"en","type":"article","venue":"DNA repair","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Nucleoplasm; Poly ADP ribose polymerase; Biology; Nucleolus; DNA repair; DNA damage; Cell biology; Molecular biology; NAD+ kinase; DNA; Polymerase; Genetics; Biochemistry; Enzyme; Cytoplasm","authors":[{"name":"Ann Rancourt","is_ca":true},{"name":"Masahiko S. Satoh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01647619092233094,"gpt":0.2720938991567115,"spread":0.2556177082343806,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002321904,0.0002072555,0.0002135293,0.0003447942,0.0003228105,0.0006472626,0.0003761635,0.0005152252,0.002021051],"category_scores_gemma":[0.0002712529,0.000203729,0.0001956428,0.0001830375,0.0004755995,0.0008094989,0.0003897316,0.0007106141,0.000391984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000552855,"about_ca_system_score_gemma":0.000215303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003020033,"about_ca_topic_score_gemma":0.000552638,"domain_scores_codex":[0.9999006,0.00001462043,0.000004629576,0.00003553577,0.00002379721,0.0000208059],"domain_scores_gemma":[0.9998299,0.00004058475,0.00004914836,0.00002790256,0.00002034173,0.00003211222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003711415,0.00002474686,0.0003643465,0.0001488391,0.0000117414,0.0003442122,0.00005018396,0.0002821232,0.9836552,0.004090409,0.0003055825,0.01035157],"study_design_scores_gemma":[0.00006339575,0.0002870962,0.00905383,0.00003040557,0.00001951806,0.002389102,0.0001699279,0.002267775,0.9691566,0.003769002,0.01277646,0.000016771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9015581,0.03724831,0.04428264,0.003708224,0.0003193709,0.00005189381,0.0005526126,0.0003061756,0.01197248],"genre_scores_gemma":[0.989865,0.003062869,0.003452517,0.0002075955,0.00005997024,0.00001912692,0.0001615105,0.00002273731,0.003148748],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002021051,"threshold_uncertainty_score":0.006761074,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013828542","doi":"10.1016/j.dnarep.2008.01.007","title":"Budding yeast Mms22 and Mms1 regulate homologous recombination induced by replisome blockage","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Homologous recombination; Replisome; Cell biology; Homologous chromosome; Genetics; Sister chromatids; Mitotic crossover; Gene; DNA replication; Chromosome; Eukaryotic DNA replication","authors":[{"name":"Eris Duro","is_ca":false},{"name":"Jessica A. Vaisica","is_ca":true},{"name":"Grant W. Brown","is_ca":true},{"name":"John Rouse","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01057288963602582,"gpt":0.2204946561945743,"spread":0.2099217665585485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002263664,0.0007158244,0.0005878559,0.000473007,0.0003309611,0.001401837,0.0005994424,0.0005661853,0.002619731],"category_scores_gemma":[0.0003170499,0.0006299023,0.0004150257,0.0002507417,0.0005364246,0.0005656072,0.000806994,0.0008348945,0.001426651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001089282,"about_ca_system_score_gemma":0.0003156005,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001899612,"about_ca_topic_score_gemma":0.001994846,"domain_scores_codex":[0.9997273,0.00003505091,0.00002589011,0.00005840974,0.0000694339,0.00008389309],"domain_scores_gemma":[0.9995795,0.00007316426,0.0001390722,0.00006294367,0.00004787443,0.00009742234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003732303,0.00002569463,0.0002786728,0.00002021861,0.00000485855,0.00004320706,0.0000189623,0.00009186106,0.9981521,0.0002412315,0.00007455151,0.0006753615],"study_design_scores_gemma":[0.00001584869,0.00005866001,0.005518666,0.000004341325,0.00000678466,0.00006231179,0.00004178583,0.001065888,0.9920223,0.00006075664,0.001135906,0.000006835115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914847,0.003263687,0.001908972,0.0001922965,0.00005651571,0.0000204937,0.0004734373,0.0004056454,0.002194241],"genre_scores_gemma":[0.9943582,0.000488027,0.0005744169,0.00004388533,0.00001192108,0.00002006142,0.0006543121,0.0001042885,0.003744791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002619731,"threshold_uncertainty_score":0.008763909,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018293376","doi":"10.1016/j.dnarep.2010.12.008","title":"HLTF and SHPRH are not essential for PCNA polyubiquitination, survival and somatic hypermutation: Existence of an alternative E3 ligase","year":2011,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Human Genome Research Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; National Institutes of Health; Francis Crick Institute","keywords":"Somatic hypermutation; Biology; Ubiquitin ligase; Somatic cell; Ubiquitin; Proliferating cell nuclear antigen; Genetics; DNA repair; DNA ligase; DNA; Antibody; Gene","authors":[{"name":"Peter H.L. Krijger","is_ca":false},{"name":"Kyoo‐young Lee","is_ca":false},{"name":"Niek Wit","is_ca":false},{"name":"Paul C.M. van den Berk","is_ca":false},{"name":"Xiaoli Wu","is_ca":true},{"name":"Henk P. Roest","is_ca":false},{"name":"Alex Maas","is_ca":false},{"name":"Hao Ding","is_ca":true},{"name":"Jan H.J. Hoeijmakers","is_ca":false},{"name":"Kyungjae Myung","is_ca":false},{"name":"Heinz Jacobs","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02573558489796279,"gpt":0.2642609887536314,"spread":0.2385254038556686,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002652389,0.0002972432,0.0003091487,0.000384968,0.0002315014,0.0004490499,0.0004826081,0.0005179721,0.002304459],"category_scores_gemma":[0.0003587047,0.000252731,0.0003537277,0.0001838172,0.0004469698,0.0005657201,0.0004946843,0.0005370281,0.0006763325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004375444,"about_ca_system_score_gemma":0.000314438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005581253,"about_ca_topic_score_gemma":0.0006939044,"domain_scores_codex":[0.9997316,0.00003214638,0.0000384547,0.00006408124,0.00006336295,0.00007027599],"domain_scores_gemma":[0.9994649,0.0001204371,0.0001061145,0.0001239244,0.00003548694,0.0001490767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004470314,0.00003336675,0.00151994,0.00002092048,0.00001494487,0.0002148489,0.00001297365,0.00005528902,0.995308,0.0003207921,0.00005472916,0.001997064],"study_design_scores_gemma":[0.00003603458,0.0001087495,0.01428544,0.000003364741,0.00002004164,0.001756432,0.00004500531,0.001207716,0.9802591,0.0001808807,0.002088068,0.000009198968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958634,0.0004901488,0.00256479,0.00009808081,0.00002089907,0.000008315882,0.0002884851,0.0000645254,0.0006013914],"genre_scores_gemma":[0.9969705,0.00006449797,0.0009507634,0.00003990752,0.000006355798,0.000009468755,0.0006642334,0.00002639749,0.001267886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002304459,"threshold_uncertainty_score":0.007709205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991159716","doi":"10.1016/j.dnarep.2014.01.014","title":"The repair of environmentally relevant DNA double strand breaks caused by high linear energy transfer irradiation – No simple task","year":2014,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Alberta Cancer Foundation; World Health Organization","keywords":"Ku80; Ku70; DNA repair; Biology; Linear energy transfer; DNA damage; DNA; Ionizing radiation; Non-homologous end joining; Irradiation; Biophysics; Molecular biology; Genetics; DNA-binding protein; Gene; Physics; Transcription factor","authors":[{"name":"Shaun Moore","is_ca":true},{"name":"Fintan Stanley","is_ca":true},{"name":"Aaron A. Goodarzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003940429678597954,"gpt":0.1945102527732946,"spread":0.1905698230946966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007037313,0.0003909975,0.000424213,0.0002584772,0.0003424746,0.0005593781,0.0004653654,0.001102317,0.001878431],"category_scores_gemma":[0.0004419625,0.0002892533,0.0002745117,0.0001451976,0.0008759441,0.001268824,0.0006324571,0.001464552,0.0007304845],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002904689,"about_ca_system_score_gemma":0.0003141629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000139875,"about_ca_topic_score_gemma":0.0001800047,"domain_scores_codex":[0.9997318,0.00006185934,0.00000919017,0.00006913931,0.00007928147,0.00004872261],"domain_scores_gemma":[0.9997397,0.00008376302,0.00003408716,0.00008695658,0.00003103405,0.00002443792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000256809,0.00005430882,0.0004691027,0.0002043171,0.00002626641,0.0001712784,0.00007645621,0.0004068782,0.9820395,0.003031371,0.000237507,0.01302625],"study_design_scores_gemma":[0.00001825291,0.000390696,0.001954741,0.0000235046,0.00003007884,0.0006382065,0.0001007756,0.0004924571,0.9870622,0.003214975,0.006048763,0.00002534883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.810603,0.04186916,0.1280321,0.003844333,0.0006359065,0.000151215,0.0002145909,0.0008082843,0.01384136],"genre_scores_gemma":[0.9590788,0.009498221,0.01632006,0.0005758408,0.0001342507,0.00004268218,0.0002025094,0.000101114,0.01404653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001878431,"threshold_uncertainty_score":0.006283998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2951750751","doi":"10.1016/j.dnarep.2019.06.005","title":"DNA damage response and repair in ovarian cancer: Potential targets for therapeutic strategies","year":2019,"lang":"en","type":"review","venue":"DNA repair","topic":"Cancer therapeutics and mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Acadia University","funders":"","keywords":"Biology; Ovarian cancer; DNA damage; DNA repair; Cancer; Effector; Cancer research; Bioinformatics; DNA; Immunology; Genetics","authors":[{"name":"Mohammad Mirza‐Aghazadeh‐Attari","is_ca":false},{"name":"Caspian Ostadian","is_ca":false},{"name":"Amir Ata Saei","is_ca":false},{"name":"Ainaz Mihanfar","is_ca":false},{"name":"Saber Ghazizadeh Darband","is_ca":false},{"name":"Shirin Sadighparvar","is_ca":false},{"name":"Mojtaba Kaviani","is_ca":true},{"name":"Hossein Samadi Kafil","is_ca":false},{"name":"Bahman Yousefi","is_ca":false},{"name":"Maryam Majidinia","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03293810450177747,"gpt":0.3334791486137566,"spread":0.3005410441119791,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006725127,0.0009642246,0.001522814,0.001809291,0.0002639903,0.001258448,0.001007505,0.001407789,0.003736347],"category_scores_gemma":[0.0007280674,0.0002497918,0.0003859308,0.00212789,0.0005903235,0.00122946,0.000838094,0.002532664,0.002311232],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008457514,"about_ca_system_score_gemma":0.0011521,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001012875,"about_ca_topic_score_gemma":0.002252296,"domain_scores_codex":[0.9998429,0.00002685323,0.00001719476,0.00002652879,0.00006294279,0.00002356888],"domain_scores_gemma":[0.9996936,0.0001446575,0.00004214817,0.000009038176,0.000071928,0.00003858325],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001103036,0.00007141339,0.0001024955,0.01267993,0.00005915485,0.0001648747,0.00003011223,0.0005281979,0.002165219,0.004862223,0.05340059,0.9258254],"study_design_scores_gemma":[0.00002454269,0.00008198468,0.0004442913,0.002527162,0.00008507654,0.0006554694,0.00004072852,0.000114722,0.0003894347,0.002689092,0.9929302,0.0000172852],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004019227,0.9987839,0.0001051777,0.000287507,0.0001822006,0.000002607371,0.00001390038,0.000005851196,0.000578654],"genre_scores_gemma":[0.0003023784,0.9987066,0.0001407206,0.000202901,0.0001879828,0.000004378145,0.00002280832,9.418688e-7,0.0004313245],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003736347,"threshold_uncertainty_score":0.01249933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1983310884","doi":"10.1016/s1568-7864(03)00003-x","title":"Mammalian DNA mismatch repair protects cells from UVB-induced DNA damage by facilitating apoptosis and p53 activation","year":2003,"lang":"en","type":"article","venue":"DNA repair","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Biology; Apoptosis; MSH2; DNA damage; DNA mismatch repair; Cell biology; Carcinogenesis; DNA repair; Cell cycle checkpoint; Cell cycle; Cancer research; Genome instability; Molecular biology; DNA; Genetics; Cancer","authors":[{"name":"Anthea Peters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01798095453204848,"gpt":0.2497876855742274,"spread":0.2318067310421789,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001916727,0.0003609187,0.0002678786,0.0005218981,0.0002255243,0.0003250101,0.0001671957,0.0002826845,0.002318945],"category_scores_gemma":[0.0002014307,0.0001635595,0.0002414696,0.0001892374,0.0001971781,0.0002903654,0.0002574169,0.000408448,0.0004121209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002692288,"about_ca_system_score_gemma":0.0001549084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000332261,"about_ca_topic_score_gemma":0.0005721541,"domain_scores_codex":[0.9998922,0.00002627915,0.000007532354,0.00001870543,0.00001902796,0.00003620865],"domain_scores_gemma":[0.9998546,0.00002636787,0.00003829244,0.00002688045,0.00002000907,0.00003389766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004182656,0.00004406167,0.0004700817,0.00005536357,0.00001068806,0.00008072049,0.00001417145,0.00004756132,0.9932816,0.0003292223,0.00009693167,0.005151366],"study_design_scores_gemma":[0.00003217677,0.0004418036,0.007467431,0.00001055619,0.00001880398,0.0004103935,0.00003173546,0.0003146584,0.9871394,0.0001302825,0.003999153,0.000003549926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9783397,0.01316809,0.004580999,0.0002871058,0.00006552918,0.00003695732,0.0002368509,0.0002377874,0.003047026],"genre_scores_gemma":[0.9928711,0.001888928,0.001763554,0.00004085364,0.00002484292,0.00002107748,0.0002318077,0.00001673272,0.003141112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002318945,"threshold_uncertainty_score":0.007757664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2799309188","doi":"10.1016/j.dnarep.2018.04.002","title":"Cross-regulation between Notch signaling pathway and miRNA machinery in cancer","year":2018,"lang":"en","type":"review","venue":"DNA repair","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Acadia University","funders":"","keywords":"Biology; Notch signaling pathway; microRNA; Crosstalk; Cyclin-dependent kinase 8; Cell fate determination; Angiogenesis; Signal transduction; Metastasis; Carcinogenesis; Cancer stem cell; Tumor progression; Hes3 signaling axis; Cancer; Suppressor; Cell signaling; Cancer research; Cell biology; Genetics; Gene; Transcription factor","authors":[{"name":"Maryam Majidinia","is_ca":false},{"name":"Saber Ghazizadeh Darband","is_ca":false},{"name":"Mojtaba Kaviani","is_ca":true},{"name":"Seyed Mohammad Nabavi","is_ca":false},{"name":"Rana Jahanban‐Esfahlan","is_ca":false},{"name":"Bahman Yousefi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03180727177815133,"gpt":0.3376144712410838,"spread":0.3058071994629325,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004589374,0.0005634342,0.0009002506,0.000869215,0.0002110657,0.0009653253,0.0006443543,0.0008957253,0.002029925],"category_scores_gemma":[0.0004435279,0.0002318743,0.0002379509,0.001037559,0.0005149468,0.000995838,0.0007083248,0.001384766,0.001071116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005524021,"about_ca_system_score_gemma":0.0008168505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004739098,"about_ca_topic_score_gemma":0.001021361,"domain_scores_codex":[0.9998745,0.00001651585,0.00001980371,0.00002930838,0.00004461789,0.00001537323],"domain_scores_gemma":[0.9998555,0.00006903256,0.00002373234,0.000005883844,0.00002880369,0.00001698658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009451407,0.0000377203,0.0002538668,0.008575562,0.00006586678,0.0003312075,0.00005838892,0.000507334,0.007087427,0.009635909,0.02336944,0.9499828],"study_design_scores_gemma":[0.00001128569,0.00004389572,0.0006335241,0.001112961,0.00008425692,0.001104687,0.00005079901,0.0001647229,0.002218364,0.003941127,0.990617,0.00001738677],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000174858,0.9981074,0.0003144081,0.0002967991,0.0002187602,0.000002329367,0.00001637844,0.000009013436,0.0008600309],"genre_scores_gemma":[0.001793479,0.9964921,0.0003306081,0.0002365507,0.0002499193,0.000004825477,0.00003170911,0.00000255606,0.0008581577],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002029925,"threshold_uncertainty_score":0.006790757,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153086574","doi":"10.1016/j.dnarep.2008.03.014","title":"Mutagenic roles of DNA “repair” proteins in antibody diversity and disease-associated trinucleotide repeat instability","year":2008,"lang":"en","type":"review","venue":"DNA repair","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":55,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"National Institutes of Health; Hospital for Sick Children; Muscular Dystrophy Association","keywords":"Biology; Genetics; DNA repair; DNA mismatch repair; Somatic hypermutation; Myotonic dystrophy; Genome instability; Trinucleotide repeat expansion; MSH2; Gene; DNA damage; DNA; Antibody","authors":[{"name":"Meghan M. Slean","is_ca":true},{"name":"Gagan B. Panigrahi","is_ca":true},{"name":"Laura P.W. Ranum","is_ca":false},{"name":"Christopher E. Pearson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04881736886144825,"gpt":0.2966595520385991,"spread":0.2478421831771509,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005521194,0.001022833,0.001349563,0.00104929,0.0002542984,0.000795915,0.001179245,0.00143895,0.00192174],"category_scores_gemma":[0.0004019933,0.0002398464,0.0003511666,0.001261945,0.0006628531,0.001143059,0.0004730512,0.001429636,0.001889558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005915583,"about_ca_system_score_gemma":0.0005799375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008287391,"about_ca_topic_score_gemma":0.001420452,"domain_scores_codex":[0.9998729,0.00001822352,0.00001997315,0.00003115266,0.00004420171,0.00001346871],"domain_scores_gemma":[0.9997759,0.00009578352,0.00003972398,0.000008289068,0.00006052795,0.00001973886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001108506,0.00007750939,0.0002902731,0.006607984,0.0000998604,0.0006410492,0.00005615118,0.0006295069,0.009084476,0.004215954,0.02314282,0.9550437],"study_design_scores_gemma":[0.00003163028,0.00009552692,0.001400746,0.001042982,0.0001492344,0.003615726,0.00007514954,0.000176028,0.004350798,0.00351399,0.9855196,0.00002855101],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003165822,0.9974805,0.0005485822,0.0002391478,0.0002499309,0.000004598865,0.00001338888,0.00001373376,0.00113348],"genre_scores_gemma":[0.001350404,0.9968556,0.000441925,0.0001733533,0.0002294171,0.000006818802,0.0000336206,0.000001761189,0.0009070549],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00192174,"threshold_uncertainty_score":0.006428897,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073715782","doi":"10.1016/j.dnarep.2006.02.007","title":"Tetratricopeptide-motif-mediated interaction of FANCG with recombination proteins XRCC3 and BRCA2","year":2006,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"FANCD2; Biology; Tetratricopeptide; RAD51; Fanconi anemia; FANCA; BRCA2 Protein; Genetics; Homologous recombination; Molecular biology; DNA repair; Cell biology; Mutation; Gene; Germline mutation","authors":[{"name":"Shobbir Hussain","is_ca":false},{"name":"James B. Wilson","is_ca":false},{"name":"Eric Blom","is_ca":false},{"name":"Larry H. Thompson","is_ca":false},{"name":"Patrick Sung","is_ca":false},{"name":"Susan M. Gordon","is_ca":true},{"name":"Gary M. Kupfer","is_ca":false},{"name":"Hans Joenje","is_ca":false},{"name":"Christopher G. Mathew","is_ca":false},{"name":"Nigel J. Jones","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004709693526958699,"gpt":0.2106275947637142,"spread":0.2059179012367555,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002379597,0.0002585013,0.0002165478,0.0001461402,0.0002064744,0.0002744083,0.0004041311,0.0002926652,0.001615986],"category_scores_gemma":[0.0002544954,0.0001574636,0.0002640729,0.0001504411,0.0001458282,0.00019449,0.0002462171,0.0003958423,0.0003792714],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006379608,"about_ca_system_score_gemma":0.0002019316,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001030443,"about_ca_topic_score_gemma":0.001052993,"domain_scores_codex":[0.999863,0.00002913134,0.00001022416,0.00003015081,0.00002738138,0.00004002834],"domain_scores_gemma":[0.999893,0.00002536657,0.00002817894,0.00001348297,0.000009354392,0.00003073881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003714258,0.00002373775,0.0001787929,0.00002472584,0.0000138891,0.00008764984,0.00001315817,0.00008722897,0.9982758,0.0001526075,0.0001072176,0.0006637303],"study_design_scores_gemma":[0.00002947903,0.00005086291,0.002425535,0.000003275285,0.000008246404,0.0002270743,0.00001190709,0.001235211,0.9944337,0.00003360971,0.001535528,0.000005569912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964084,0.000976822,0.001384076,0.000100194,0.00003437011,0.00001856732,0.0001762829,0.00005093734,0.000850484],"genre_scores_gemma":[0.9964825,0.0002319126,0.0009527899,0.0000551199,0.000007426171,0.00001604536,0.000456173,0.00001687656,0.00178119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001615986,"threshold_uncertainty_score":0.005405962,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171725228","doi":"10.1016/j.dnarep.2003.09.005","title":"Involvement of two endonuclease III homologs in the base excision repair pathway for the processing of DNA alkylation damage in Saccharomyces cerevisiae","year":2003,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"AP site; DNA glycosylase; Base excision repair; AP endonuclease; Biology; Endonuclease; DNA-(apurinic or apyrimidinic site) lyase; Methyl methanesulfonate; DNA repair; DNA damage; Molecular biology; DNA; Nucleotide excision repair; Saccharomyces cerevisiae; Mutant; Biochemistry; Yeast; Gene","authors":[{"name":"Michelle Hanna","is_ca":true},{"name":"Barbara L. Chow","is_ca":true},{"name":"Natalie J Morey","is_ca":false},{"name":"Sue Jinks-Robertson","is_ca":false},{"name":"Paul W. Doetsch","is_ca":false},{"name":"Wei Xiao","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01840337712797198,"gpt":0.2640118390156314,"spread":0.2456084618876594,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002027937,0.0004415694,0.0003893039,0.0003228758,0.0002843975,0.00111411,0.00031294,0.0006434259,0.0008157888],"category_scores_gemma":[0.0005008259,0.0002405819,0.0003006754,0.0002400079,0.0002137746,0.0004002309,0.0003462907,0.0005334492,0.000509248],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005111817,"about_ca_system_score_gemma":0.00045548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001527944,"about_ca_topic_score_gemma":0.0009693635,"domain_scores_codex":[0.9998783,0.00001317791,0.00001647708,0.00002890313,0.00003944272,0.00002367885],"domain_scores_gemma":[0.9995511,0.00008926688,0.00009542785,0.00006275297,0.00008792047,0.0001134681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002482226,0.00002568097,0.0008043107,0.00003678159,0.000006198919,0.0003151112,0.00004820282,0.00009453724,0.9968779,0.0002355186,0.00002571297,0.001281858],"study_design_scores_gemma":[0.00002412697,0.0001071345,0.0115685,0.000009887968,0.00002877858,0.0008594749,0.0001725733,0.000859511,0.9849989,0.000119406,0.001240223,0.00001160895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954914,0.0009261406,0.00248529,0.00007880836,0.00002881251,0.00001104524,0.0001984743,0.0000615376,0.0007184146],"genre_scores_gemma":[0.9965634,0.0002987921,0.001269183,0.00002667477,0.000003611005,0.000007112636,0.0005693068,0.00002747481,0.001234412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001527944,"threshold_uncertainty_score":0.003708899,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078932864","doi":"10.1016/j.dnarep.2008.03.020","title":"Endogenous hSNM1B/Apollo interacts with TRF2 and stimulates ATM in response to ionizing radiation","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Cancer Institute; Deutsche Forschungsgemeinschaft","keywords":"Telomere; Biology; DNA damage; Ionizing radiation; Cell biology; Endogeny; Autophosphorylation; Shelterin; Phosphorylation; DNA; Genetics; DNA-binding protein; Transcription factor; Gene; Biochemistry; Irradiation","authors":[{"name":"Ilja Demuth","is_ca":false},{"name":"Paul S. Bradshaw","is_ca":true},{"name":"Anika Lindner","is_ca":false},{"name":"Marco Anders","is_ca":false},{"name":"Stefanie Heinrich","is_ca":false},{"name":"Julia Kallenbach","is_ca":false},{"name":"Karin Schmelz","is_ca":false},{"name":"Martin Digweed","is_ca":false},{"name":"M. Stephen Meyn","is_ca":true},{"name":"Patrick Concannon","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01573662532440129,"gpt":0.2328137380395531,"spread":0.2170771127151518,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002424979,0.0003712881,0.0002729573,0.0003300835,0.0003381764,0.000666988,0.0005363922,0.0004145362,0.00295304],"category_scores_gemma":[0.0002398576,0.0003526643,0.0003077146,0.0002418528,0.0003909376,0.0003411441,0.0004057592,0.0008593607,0.001709343],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009333512,"about_ca_system_score_gemma":0.0002046797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001004748,"about_ca_topic_score_gemma":0.002122021,"domain_scores_codex":[0.999687,0.00002658695,0.00001662522,0.00008923186,0.00009328152,0.00008719389],"domain_scores_gemma":[0.9997105,0.00004270832,0.00006593355,0.00005108188,0.00001898998,0.0001107973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001607942,0.00002305112,0.0002092877,0.00002371969,0.000003935454,0.00003693681,0.000006450947,0.000020197,0.9989925,0.00005603315,0.0001038007,0.0003632931],"study_design_scores_gemma":[0.0000316652,0.00003822689,0.01055883,0.000007194214,0.000007547887,0.0002499322,0.00003568488,0.001272843,0.9840104,0.00005296974,0.003727239,0.000007432924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906307,0.001970625,0.003550979,0.0003925543,0.0001637311,0.00001976771,0.0007283933,0.0002156388,0.002327619],"genre_scores_gemma":[0.9873497,0.0005497165,0.003006292,0.0002053005,0.00004663873,0.00003556584,0.002065921,0.0001610426,0.00657981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00295304,"threshold_uncertainty_score":0.009878933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095238121","doi":"10.1016/j.dnarep.2006.09.005","title":"XPF with mutations in its conserved nuclease domain is defective in DNA repair but functions in TRF2-mediated telomere shortening","year":2006,"lang":"en","type":"article","venue":"DNA repair","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Telomere; Biology; Nuclease; Nucleotide excision repair; Telomere-binding protein; ERCC1; DNA repair; DNA damage; Endonuclease; Telomerase; Molecular biology; Cell biology; DNA; Genetics; DNA-binding protein; Gene; Transcription factor","authors":[{"name":"Yili Wu","is_ca":true},{"name":"Natalie Zacal","is_ca":true},{"name":"Andrew J. Rainbow","is_ca":true},{"name":"Xu‐Dong Zhu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01243902528185465,"gpt":0.2337561493641543,"spread":0.2213171240822997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003725965,0.0008356543,0.0006668209,0.0006247566,0.0003711363,0.0004915557,0.0005736773,0.0009835107,0.00253299],"category_scores_gemma":[0.0004672777,0.0002854521,0.0005590636,0.0004418759,0.0009096204,0.0003773007,0.0004569194,0.0009626169,0.0008953963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002765568,"about_ca_system_score_gemma":0.0003276355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006820084,"about_ca_topic_score_gemma":0.0005479549,"domain_scores_codex":[0.9997604,0.00004755371,0.00003958254,0.00004877007,0.00006535849,0.00003834657],"domain_scores_gemma":[0.9995031,0.0001327327,0.000127794,0.00008231847,0.00002895396,0.0001249979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007722417,0.0002325126,0.002736613,0.00009253017,0.0001123728,0.005043283,0.00005606381,0.0005653907,0.9815655,0.000987213,0.0004840514,0.0073523],"study_design_scores_gemma":[0.0001982639,0.0005499581,0.01874154,0.00002632281,0.0001023253,0.03307524,0.00007948095,0.002847696,0.9362361,0.000409452,0.007692744,0.00004096271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929624,0.0009700038,0.004008968,0.0002151434,0.00007426566,0.00002435864,0.0004320184,0.00017762,0.00113515],"genre_scores_gemma":[0.9950942,0.0003073975,0.001354323,0.00004781986,0.00002708667,0.0000244083,0.000611887,0.00008417737,0.00244876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00253299,"threshold_uncertainty_score":0.008473694,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2969899249","doi":"10.1016/j.dnarep.2019.102693","title":"R-loop-dependent replication and genomic instability in bacteria","year":2019,"lang":"en","type":"review","venue":"DNA repair","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; DnaA; Pre-replication complex; Replication factor C; DNA replication; Control of chromosome duplication; Origin recognition complex; Genetics; Eukaryotic DNA replication; Semiconservative replication; Origin of replication; Genome instability; Ter protein; RNase H; Prokaryotic DNA replication; RNase P; Cell biology; DNA; RNA; Gene; DNA damage","authors":[{"name":"Marc Drolet","is_ca":true},{"name":"Julien Brochu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02524440409248118,"gpt":0.2862922750726989,"spread":0.2610478709802178,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007516254,0.001580447,0.001753906,0.001982835,0.0003191156,0.001320791,0.00138748,0.002124588,0.002751508],"category_scores_gemma":[0.0007683559,0.0005412452,0.0003780302,0.002574082,0.001079941,0.00157527,0.001098849,0.002223032,0.003527938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001113599,"about_ca_system_score_gemma":0.0009680493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00125351,"about_ca_topic_score_gemma":0.001687072,"domain_scores_codex":[0.9997863,0.00003033973,0.00002553738,0.0000495987,0.00007860353,0.00002960149],"domain_scores_gemma":[0.9996892,0.0001510224,0.00004452708,0.00001217317,0.00006982789,0.0000331761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000107991,0.00005927446,0.00006797094,0.01028744,0.00004089737,0.0001763199,0.00003033466,0.0005048983,0.004154242,0.005889412,0.03608451,0.9425968],"study_design_scores_gemma":[0.00002540883,0.00007882228,0.000307214,0.001785949,0.00005598855,0.0007246064,0.00002501075,0.0001325761,0.001105641,0.003338576,0.9923977,0.00002247729],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004377601,0.9987019,0.0001917444,0.000153108,0.000261671,0.000002577933,0.000009347902,0.000006774217,0.0006289492],"genre_scores_gemma":[0.0004267127,0.9978526,0.0001978578,0.000228871,0.0003840841,0.000006215208,0.00002702015,0.000002011406,0.0008747342],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002751508,"threshold_uncertainty_score":0.009204686,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127736543","doi":"10.1016/s1568-7864(02)00109-x","title":"Ultraviolet light-induced apoptosis is associated with S-phase in primary human fibroblasts","year":2002,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Regional Cancer Foundation; University of Ottawa","funders":"National Cancer Institute","keywords":"Apoptosis; Biology; DNA damage; DNA repair; Ultraviolet light; Molecular biology; UVB-induced apoptosis; Programmed cell death; Transcription (linguistics); Cell biology; DNA; Cancer research; Caspase; Genetics; Chemistry; Photochemistry","authors":[{"name":"Bruce C. McKay","is_ca":true},{"name":"Cecilia Becerril","is_ca":true},{"name":"Jennifer C. Spronck","is_ca":true},{"name":"Mats Ljungman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0133598596432033,"gpt":0.2397454979859063,"spread":0.226385638342703,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003374986,0.0002965695,0.000442908,0.0006379311,0.0003755333,0.0004088676,0.0002646619,0.0003208398,0.002107639],"category_scores_gemma":[0.0003723399,0.0002961807,0.0004694477,0.0004723771,0.0001901624,0.0002565325,0.0001940401,0.0004914306,0.0008244432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003332467,"about_ca_system_score_gemma":0.0002666993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002572877,"about_ca_topic_score_gemma":0.002369662,"domain_scores_codex":[0.999737,0.00004845221,0.00004771786,0.00004367285,0.0000646886,0.00005846554],"domain_scores_gemma":[0.9995424,0.0001894729,0.00004923944,0.00008615459,0.00007901376,0.00005388537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000874589,0.00008244687,0.001180075,0.00007158983,0.00001555226,0.0004182693,0.00009699554,0.00005870153,0.9948901,0.0001454652,0.0001090202,0.00205719],"study_design_scores_gemma":[0.0000679887,0.001202828,0.03017505,0.00001646769,0.00005049105,0.001630715,0.0001206516,0.0005878298,0.96246,0.0001416154,0.003534744,0.00001156115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848285,0.008003598,0.0027409,0.0001168349,0.00006723469,0.00005214804,0.001099715,0.00009788049,0.002993163],"genre_scores_gemma":[0.9898092,0.002559362,0.001265616,0.000048374,0.00002646264,0.00005901475,0.001322857,0.00001619703,0.004893027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002572877,"threshold_uncertainty_score":0.007050812,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2008605706","doi":"10.1016/j.dnarep.2015.03.003","title":"TDP1 promotes assembly of non-homologous end joining protein complexes on DNA","year":2015,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Institute of Neurological Disorders and Stroke; National Cancer Institute; National Institutes of Health","keywords":"Biology; Non-homologous end joining; Homologous chromosome; DNA; Genetics; Homologous recombination; Cell biology; Gene","authors":[{"name":"Jinho Heo","is_ca":false},{"name":"Jing Li","is_ca":false},{"name":"Matthew Summerlin","is_ca":false},{"name":"Annette Hays","is_ca":false},{"name":"Sachin Katyal","is_ca":true},{"name":"Peter J. McKinnon","is_ca":false},{"name":"Karin C. Nitiss","is_ca":false},{"name":"John L. Nitiss","is_ca":false},{"name":"Leslyn A. Hanakahi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02143677148912969,"gpt":0.2641739331804628,"spread":0.2427371616913331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003810792,0.000420489,0.0002814308,0.0003987059,0.0004398685,0.0006555373,0.0004811085,0.0003228693,0.003481048],"category_scores_gemma":[0.000500225,0.0003627029,0.0003380653,0.0001983691,0.0002531009,0.0003736017,0.0007461477,0.0009718154,0.001439955],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009088208,"about_ca_system_score_gemma":0.0003437518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008984182,"about_ca_topic_score_gemma":0.001345177,"domain_scores_codex":[0.9997296,0.00004119135,0.00001559903,0.00007525353,0.00006226344,0.00007619507],"domain_scores_gemma":[0.9995608,0.000125979,0.0000722613,0.00005945118,0.00005399372,0.0001276232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000179594,0.00004225954,0.0001904128,0.00005628738,0.000006983589,0.00008181077,0.00003214878,0.00005958766,0.9979476,0.0002125303,0.0001591895,0.001031432],"study_design_scores_gemma":[0.000005329288,0.00002331905,0.001445659,0.000003428648,0.000004006471,0.00006822842,0.00001696855,0.0004048704,0.9965205,0.00003321948,0.001472333,0.000002102417],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843204,0.002761478,0.008199102,0.0002629449,0.0001097722,0.00004723987,0.000426774,0.0002315197,0.003640745],"genre_scores_gemma":[0.989216,0.0005465082,0.002704324,0.00006343557,0.00001882337,0.00002676606,0.0008945999,0.0001297611,0.006399732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003481048,"threshold_uncertainty_score":0.01164532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068769666","doi":"10.1016/j.dnarep.2008.10.002","title":"Recovery of deficient homologous recombination in Brca2-depleted mouse cells by wild-type Rad51 expression","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; University of Guelph","funders":"","keywords":"RAD51; Homologous recombination; RAD52; Biology; BRCA2 Protein; Non-homologous end joining; Homologous chromosome; Molecular biology; DNA repair; Cell biology; Genetics; Mutation; DNA; Gene; Germline mutation","authors":[{"name":"Shauna A. Lee","is_ca":true},{"name":"Céline Lopez‐Roques","is_ca":true},{"name":"Alissa C. Magwood","is_ca":true},{"name":"Jean‐Yves Masson","is_ca":true},{"name":"Mark D. Baker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008624454101620294,"gpt":0.2119013477256801,"spread":0.2032768936240598,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005242062,0.0009613938,0.0006374776,0.0009748339,0.0003109527,0.0005809169,0.0006771504,0.0008422518,0.002722467],"category_scores_gemma":[0.0003018591,0.000513968,0.0007668535,0.0003882396,0.0005068555,0.000506403,0.0004507816,0.001586367,0.001431739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004306303,"about_ca_system_score_gemma":0.0003640333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007366739,"about_ca_topic_score_gemma":0.0007840818,"domain_scores_codex":[0.9996042,0.00004943347,0.00005786941,0.00009015731,0.00009263165,0.0001057809],"domain_scores_gemma":[0.9994233,0.0001082238,0.0001163104,0.0001706674,0.00003448825,0.0001471477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001440785,0.00002720199,0.00008999118,0.00003079298,0.00000808096,0.00006955558,0.00001613165,0.00005337947,0.9985667,0.0003180876,0.00005258624,0.000623467],"study_design_scores_gemma":[0.00001370677,0.00005969066,0.0008504333,0.000005513815,0.000009677572,0.0001430852,0.00001010891,0.0002818296,0.9975917,0.00005177925,0.0009791644,0.000003320228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9769171,0.00282498,0.01137893,0.0003805011,0.0001643009,0.0001123093,0.002948722,0.001008012,0.004264974],"genre_scores_gemma":[0.9759305,0.001143893,0.005541583,0.0001102535,0.00002791515,0.0001493456,0.002885479,0.0002342332,0.01397682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002722467,"threshold_uncertainty_score":0.00910759,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074887011","doi":"10.1016/j.dnarep.2005.06.005","title":"DNA-PK is responsible for enhanced phosphorylation of histone H2AX under hypertonic conditions","year":2005,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute","keywords":"Biology; Phosphorylation; Histone; Kinase; DNA damage; Phosphatase; Molecular biology; DNA; Tonicity; DNA repair; Serine; Biochemistry; Cell biology","authors":[{"name":"Tarren Reitsema","is_ca":true},{"name":"Dmitry Klokov","is_ca":false},{"name":"Judit P. Banáth","is_ca":false},{"name":"Peggy L. Olive","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01257150310503356,"gpt":0.2969869863706437,"spread":0.2844154832656102,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000194977,0.0004189239,0.0004271629,0.0001752041,0.000221872,0.0003826704,0.0004225308,0.0004090156,0.001941328],"category_scores_gemma":[0.0004035271,0.0003097461,0.0002449758,0.0001487219,0.0005736093,0.0005253009,0.000450062,0.0009536766,0.0003798156],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005289039,"about_ca_system_score_gemma":0.0003300366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008995921,"about_ca_topic_score_gemma":0.0006295666,"domain_scores_codex":[0.999863,0.0000183215,0.00001555746,0.00002995469,0.00003339874,0.00003968473],"domain_scores_gemma":[0.9997551,0.00005973972,0.00004618684,0.00004368227,0.00002819217,0.0000670087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002573232,0.00000731549,0.00009448137,0.00003205808,0.000002533785,0.00006166905,0.000008845776,0.00002308062,0.9991756,0.00005866789,0.00001180678,0.0002665751],"study_design_scores_gemma":[0.00002326695,0.00006218197,0.002860755,0.000003820564,0.000006246878,0.0001985431,0.00001988591,0.0002950836,0.9960628,0.00006623208,0.0003970181,0.000004097166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930998,0.00184483,0.002541787,0.0002558631,0.0000813771,0.00003998886,0.0003875406,0.00007704834,0.00167178],"genre_scores_gemma":[0.9964824,0.000419778,0.00115223,0.00004462958,0.00001752235,0.00002555671,0.0003637766,0.00002595877,0.001468141],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001941328,"threshold_uncertainty_score":0.006494403,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2954867976","doi":"10.1016/j.dnarep.2019.06.008","title":"The yeast proteases Ddi1 and Wss1 are both involved in the DNA replication stress response","year":2019,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Weizmann Institute of Science; European Regional Development Fund; Ministry of Education","keywords":"Biology; DNA replication; Proteases; Control of chromosome duplication; Eukaryotic DNA replication; Protease; Cell biology; DNA repair; Replication factor C; Genetics; Yeast; DNA; Computational biology; Biochemistry; Enzyme","authors":[{"name":"Michal Svoboda","is_ca":false},{"name":"Jan Konvalinka","is_ca":false},{"name":"Jean‐François Trempe","is_ca":true},{"name":"Klára Grantz Šašková","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009518344413786605,"gpt":0.2395604659779974,"spread":0.2300421215642108,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000159483,0.0006601706,0.0003562214,0.0002293096,0.0001641454,0.0005138563,0.0001994397,0.0003012099,0.0009326654],"category_scores_gemma":[0.0001614254,0.0001564044,0.0002587632,0.0001615526,0.0002874534,0.0002449557,0.000271838,0.0004572433,0.0003881451],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003268185,"about_ca_system_score_gemma":0.0002252889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004077946,"about_ca_topic_score_gemma":0.0004263497,"domain_scores_codex":[0.9998511,0.00001541139,0.00001642416,0.00004498325,0.00005046136,0.00002157744],"domain_scores_gemma":[0.9998465,0.00002167563,0.00006984326,0.0000122864,0.00001816176,0.00003156371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007906464,0.0000112357,0.0006483996,0.00004441698,0.000006633658,0.00006212819,0.000007899752,0.0000472403,0.997205,0.0001219223,0.00002430609,0.00174174],"study_design_scores_gemma":[0.000005475054,0.00006198588,0.003599098,0.000002804589,0.00001009555,0.0004466262,0.00002589556,0.0003624606,0.9934853,0.00005999804,0.00193711,0.0000033198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983099,0.005479399,0.00952834,0.0002063331,0.00004991852,0.00002807689,0.0005912631,0.0001394752,0.0008780927],"genre_scores_gemma":[0.9905694,0.001299779,0.005260387,0.00003980617,0.000009736836,0.00001235014,0.0008121412,0.00001700424,0.001979454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009326654,"threshold_uncertainty_score":0.003120065,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074928339","doi":"10.1016/j.dnarep.2006.05.014","title":"Palindromes and genomic stress fractures: Bracing and repairing the damage","year":2006,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto","funders":"National Cancer Institute","keywords":"Palindrome; Biology; Genome instability; Genome; DNA; DNA damage; Cruciform; Genetics; Palindromic sequence; Evolutionary biology; Computational biology; Gene; Structural engineering","authors":[{"name":"Susanna M. Lewis","is_ca":true},{"name":"Atina G. Coté","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01416960753588604,"gpt":0.2862934112277959,"spread":0.2721238036919099,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007219136,0.001482145,0.002344749,0.001968047,0.0005285983,0.001725613,0.002248337,0.003107362,0.003607577],"category_scores_gemma":[0.0008240561,0.0004841397,0.0004815304,0.00244073,0.001363427,0.002010758,0.0007455042,0.002636731,0.003176123],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007849284,"about_ca_system_score_gemma":0.0009848267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001336563,"about_ca_topic_score_gemma":0.002326004,"domain_scores_codex":[0.9997562,0.00003333214,0.00002919562,0.00005131404,0.000102269,0.00002773129],"domain_scores_gemma":[0.9996253,0.0001752691,0.00005750665,0.00001473604,0.00009176839,0.0000352983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001568209,0.00009184356,0.0001960524,0.007998056,0.00007977666,0.0005455562,0.0001045258,0.0005654046,0.005785915,0.00568148,0.03471334,0.9440813],"study_design_scores_gemma":[0.00003526751,0.00009749529,0.0007013023,0.001379148,0.00009387912,0.003189228,0.0001273306,0.0001129388,0.002106285,0.004612862,0.987511,0.0000332756],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001208373,0.998098,0.0003947433,0.0002547624,0.0003576532,0.00000419031,0.00001221713,0.00001073986,0.0007470379],"genre_scores_gemma":[0.0007744445,0.9969856,0.0004015542,0.000258752,0.0003302301,0.000009368201,0.00003056971,0.000002154943,0.001207365],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003607577,"threshold_uncertainty_score":0.01206851,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050419560","doi":"10.1016/j.dnarep.2009.02.001","title":"X-irradiation and bystander effects induce similar changes of transcript profiles in most functional pathways in human melanoma cells","year":2009,"lang":"en","type":"article","venue":"DNA repair","topic":"Effects of Radiation Exposure","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Bystander effect; Biology; KEGG; Cell cycle; Gene; Apoptosis; Molecular biology; Cell biology; Genetics; Gene expression; Transcriptome; Immunology","authors":[{"name":"Joanna Rzeszowska‐Wolny","is_ca":false},{"name":"Robert Herok","is_ca":false},{"name":"Maria Wideł","is_ca":false},{"name":"Ronald Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0134826284933628,"gpt":0.2338309255409937,"spread":0.2203482970476309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001102419,0.0002592341,0.0002531482,0.0004904746,0.0002732276,0.0003265276,0.00007399526,0.0001963301,0.002676779],"category_scores_gemma":[0.0001729275,0.0001352645,0.0004094269,0.0004050116,0.0001596193,0.0001835902,0.0001628283,0.0002952187,0.0005936626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001388714,"about_ca_system_score_gemma":0.0001970125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000932936,"about_ca_topic_score_gemma":0.0009924845,"domain_scores_codex":[0.9998631,0.00001534407,0.00001027422,0.00004677012,0.00002425342,0.00004028957],"domain_scores_gemma":[0.9998409,0.0000446172,0.00002857214,0.00002248939,0.00003440192,0.00002900482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001686557,0.00001072758,0.0009830564,0.00002332371,0.000006622275,0.0000295525,0.00003989921,0.00002403328,0.9978197,0.00002569646,0.00002311544,0.0008456649],"study_design_scores_gemma":[0.00002231038,0.0007262155,0.2216041,0.00001688598,0.00007708406,0.0006555232,0.0003864341,0.0003504255,0.7726697,0.0001282951,0.003347638,0.00001537181],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992397,0.0016822,0.001690354,0.00004960614,0.00001843198,0.00003216382,0.002607544,0.00004983959,0.001472784],"genre_scores_gemma":[0.9811732,0.001420651,0.002277707,0.0000717925,0.00001336741,0.000113161,0.006266896,0.0000425712,0.00862071],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002676779,"threshold_uncertainty_score":0.008954763,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2580387602","doi":"10.1016/j.dnarep.2016.12.010","title":"Repair of Oxidative DNA Damage in Saccharomyces cerevisiae","year":2017,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"United Arab Emirates University; Terry Fox Foundation","keywords":"DNA repair; Biology; DNA damage; Nucleotide excision repair; Base excision repair; Homologous recombination; DNA; DNA mismatch repair; Replication protein A; Saccharomyces cerevisiae; DNA replication; Postreplication repair; Homology directed repair; Cell biology; Genetics; Gene; DNA-binding protein; Transcription factor","authors":[{"name":"Jisha Chalissery","is_ca":false},{"name":"Deena Jalal","is_ca":false},{"name":"Zeina Al Natour","is_ca":false},{"name":"Ahmed H. Hassan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04902205829208792,"gpt":0.3429628252217978,"spread":0.2939407669297099,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005406961,0.001107592,0.001426911,0.001834534,0.0002766046,0.001243494,0.001104261,0.00101892,0.001392016],"category_scores_gemma":[0.0005599316,0.0003208833,0.0003633792,0.002425837,0.0005328094,0.001098673,0.0008065581,0.001352178,0.001280099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007539967,"about_ca_system_score_gemma":0.00122909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001669922,"about_ca_topic_score_gemma":0.002601807,"domain_scores_codex":[0.9998426,0.00001670242,0.00002685358,0.00002931505,0.0000637571,0.00002078435],"domain_scores_gemma":[0.9998161,0.00005216354,0.00004076993,0.000008054301,0.00005427259,0.00002865898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001093821,0.00003241559,0.0001108976,0.01834239,0.00008598968,0.0001570528,0.00003889129,0.0005621369,0.004607874,0.002816452,0.02287742,0.9502592],"study_design_scores_gemma":[0.00001520268,0.00005272289,0.000407167,0.001874385,0.0001305118,0.0005766989,0.00004023036,0.00008275409,0.001821921,0.001552234,0.9934291,0.00001706488],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009670793,0.9989595,0.0001520091,0.000111155,0.0001690937,0.000002785912,0.00001943843,0.000007716176,0.0004815613],"genre_scores_gemma":[0.000566488,0.9986325,0.0001527239,0.00009335836,0.00008991364,0.000002433939,0.00004166434,0.00000130944,0.0004196591],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001834534,"threshold_uncertainty_score":0.005470693,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993925622","doi":"10.1016/j.dnarep.2012.10.006","title":"Tissue-specific mismatch repair protein expression: MSH3 is higher than MSH6 in multiple mouse tissues","year":2012,"lang":"en","type":"article","venue":"DNA repair","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Muscular Dystrophy Association","keywords":"Biology; MSH2; DNA mismatch repair; MSH6; Somatic hypermutation; Molecular biology; Cancer research; DNA repair; Cell biology; Genetics; Gene; Antibody; B cell","authors":[{"name":"Stéphanie Tomé","is_ca":true},{"name":"Jodie P. Simard","is_ca":true},{"name":"Meghan M. Slean","is_ca":true},{"name":"Ian Holt","is_ca":false},{"name":"Glenn E. Morris","is_ca":false},{"name":"Kamila Wojciechowicz","is_ca":false},{"name":"Hein te Riele","is_ca":false},{"name":"Christopher E. Pearson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03985460976223611,"gpt":0.2863302186162268,"spread":0.2464756088539906,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003076472,0.0007549116,0.0004892372,0.002313787,0.000486908,0.0008971837,0.000340546,0.0007867988,0.004307459],"category_scores_gemma":[0.0002231768,0.000687434,0.0007182231,0.0005919882,0.0006401053,0.0007641995,0.000509939,0.001457506,0.0009292915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000561417,"about_ca_system_score_gemma":0.0003331761,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001168169,"about_ca_topic_score_gemma":0.001941813,"domain_scores_codex":[0.9994724,0.00003253571,0.00005872995,0.0001988932,0.000129168,0.0001082446],"domain_scores_gemma":[0.9991635,0.00008184212,0.0002931223,0.0000760359,0.00007470709,0.0003108079],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001646903,0.000009225036,0.0003797012,0.0000223044,0.000008399546,0.0000407531,0.00001432103,0.00001050464,0.9988166,0.0001034435,0.00002557378,0.0004044504],"study_design_scores_gemma":[0.00001891293,0.0001145038,0.0129375,0.000008528726,0.00005417366,0.0005034402,0.00007123913,0.0001991808,0.9840083,0.0001030491,0.001972547,0.000008570431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805596,0.004530024,0.008739885,0.0003914424,0.0001275395,0.00003211647,0.002134544,0.0005679051,0.002916966],"genre_scores_gemma":[0.9726122,0.001668846,0.005287188,0.0002270373,0.0000431424,0.00007273642,0.002620993,0.0003210521,0.01714673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004307459,"threshold_uncertainty_score":0.01440984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990840476","doi":"10.1016/j.dnarep.2008.05.007","title":"Chromium-mediated apoptosis: Involvement of DNA-dependent protein kinase (DNA-PK) and differential induction of p53 target genes","year":2008,"lang":"en","type":"article","venue":"DNA repair","topic":"Cancer-related Molecular Pathways","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Puma; Biology; DNA damage; Molecular biology; RNA polymerase II; DNA repair; Cell cycle; Apoptosis; Cell biology; Transcription (linguistics); DNA; Gene expression; Promoter; Gene; Biochemistry","authors":[{"name":"Richard Hill","is_ca":false},{"name":"Andrew M. Leidal","is_ca":true},{"name":"Patrícia A. Madureira","is_ca":true},{"name":"Laura D. Gillis","is_ca":true},{"name":"David M. Waisman","is_ca":true},{"name":"Arthur Chiu","is_ca":false},{"name":"Patrick W.K. Lee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01689133360503944,"gpt":0.2253553680996372,"spread":0.2084640344945978,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002777668,0.0004252195,0.0004607699,0.0004415978,0.0003232213,0.0005072685,0.0002915137,0.0004399031,0.001502778],"category_scores_gemma":[0.0002860252,0.000222682,0.0004753017,0.0002976555,0.0003702582,0.0004013127,0.0002154914,0.0005274017,0.0002541232],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006614947,"about_ca_system_score_gemma":0.0003942714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001206785,"about_ca_topic_score_gemma":0.001602534,"domain_scores_codex":[0.9995515,0.00007563538,0.00003841021,0.00007961278,0.00009498788,0.0001599127],"domain_scores_gemma":[0.9998121,0.00003095377,0.00004505499,0.00003603076,0.0000467032,0.00002914434],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002202042,0.00004997897,0.0006284618,0.00009036336,0.00001923958,0.0001595624,0.0000258272,0.00005712379,0.9942115,0.0002231493,0.00002988684,0.002302819],"study_design_scores_gemma":[0.00002259907,0.0003427376,0.006347404,0.000004825692,0.00002917167,0.0004493891,0.00003312406,0.0001798669,0.991985,0.00005057911,0.0005510382,0.000004249603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843503,0.006271562,0.005905014,0.0002161146,0.00008402955,0.00007069927,0.0003094538,0.0001198735,0.002672801],"genre_scores_gemma":[0.995667,0.0009258561,0.001217407,0.00003269319,0.00001027785,0.00001830518,0.0001339034,0.00001001533,0.001984601],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001502778,"threshold_uncertainty_score":0.005027294,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046785167","doi":"10.1016/j.dnarep.2010.03.013","title":"Requirement for functional DNA polymerase eta in genome-wide repair of UV-induced DNA damage during S phase","year":2010,"lang":"en","type":"article","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôpital Maisonneuve-Rosemont; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Xeroderma pigmentosum; Pyrimidine dimer; Biology; Nucleotide excision repair; DNA damage; DNA polymerase; Molecular biology; DNA repair; DNA synthesis; DNA replication; Cockayne syndrome; DNA; Mutation; Genetics; Gene","authors":[{"name":"Yannick Auclair","is_ca":false},{"name":"Raphaël Rouget","is_ca":true},{"name":"Jonathan M. Bélisle","is_ca":true},{"name":"Santiago Costantino","is_ca":true},{"name":"Elliot Drobetsky","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01694051456634848,"gpt":0.2665060529642735,"spread":0.2495655383979251,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004995334,0.0002985969,0.0004095593,0.0005295832,0.0002559747,0.001025804,0.0002756707,0.0004684656,0.002052036],"category_scores_gemma":[0.0007506444,0.0003798491,0.0003641012,0.0002011094,0.000330131,0.0003770314,0.0003419958,0.0005390037,0.000978022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004315219,"about_ca_system_score_gemma":0.0003954835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008665712,"about_ca_topic_score_gemma":0.001265003,"domain_scores_codex":[0.9997439,0.00005276505,0.00003735214,0.00007072753,0.00005034708,0.00004499242],"domain_scores_gemma":[0.9991025,0.0002972908,0.0000894241,0.000175019,0.0001156998,0.0002201805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002107984,0.00001881393,0.0006609802,0.00002161886,0.000008045624,0.00002878057,0.000008836137,0.00007346406,0.9979563,0.0001257881,0.0000312314,0.0008552389],"study_design_scores_gemma":[0.00002531714,0.0001563562,0.02784893,0.00001177365,0.00002302388,0.0006433643,0.00005428803,0.002965972,0.9665392,0.0002272375,0.001495195,0.000009352632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893636,0.002629477,0.005771148,0.0002527729,0.00005458742,0.00001747876,0.000748042,0.0002612364,0.0009016073],"genre_scores_gemma":[0.9942022,0.0002324364,0.0022668,0.00005214746,0.000008675797,0.0000161535,0.001570368,0.00006207037,0.001589153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002052036,"threshold_uncertainty_score":0.006864727,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}