{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":55,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":55,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"49cbaa0a5fac","filters":{"venue":"Extremophiles"}},"results":[{"id":"W2043944658","doi":"10.1007/s00792-005-0498-4","title":"Bioremediation of hydrocarbon-contaminated polar soils","year":2006,"lang":"en","type":"review","venue":"Extremophiles","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":341,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Bioremediation; Environmental remediation; Environmental chemistry; Soil water; Environmental science; Biodegradation; Microbial biodegradation; Soil contamination; Chemistry; Contamination; Microorganism; Soil science; Ecology; Geology; Biology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02133270258260223,"gpt":0.2573669877919863,"spread":0.2360342852093841,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002808346,0.0004094798,0.00112424,0.0001434058,0.00005981369,0.00001539001,0.0003790623,0.0004314609,0.0009656312],"category_scores_gemma":[0.00002659921,0.0003054933,0.000365739,0.000561608,0.000184035,0.0000855243,0.0001492099,0.0003061273,0.0006001731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001559668,"about_ca_system_score_gemma":0.000032718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005074127,"about_ca_topic_score_gemma":0.00001857212,"domain_scores_codex":[0.997901,0.0001774933,0.000770319,0.0004603963,0.0003689011,0.0003218971],"domain_scores_gemma":[0.9987092,0.0001087545,0.0006526539,0.000428935,0.000007753304,0.00009271006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002078746,0.0001298881,0.0001223809,0.002303931,0.0001023424,0.00002166846,0.00007104306,0.00009861672,0.0001026741,0.00006370646,0.002349058,0.9946326],"study_design_scores_gemma":[0.0001410718,0.00004313922,0.0001145472,0.001616555,0.0004023488,0.00001333914,0.000004257447,0.0001615365,0.000027172,0.0004097085,0.9966534,0.0004129221],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004108098,0.9798968,0.00001479387,0.00001052052,0.000278411,0.0004630101,0.00005561893,0.0000453596,0.01882463],"genre_scores_gemma":[0.0007370306,0.9968097,0.0002012907,0.000009008057,0.0001559571,0.0000203204,0.0003668338,0.00005739908,0.001642419],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9943044,"threshold_uncertainty_score":0.9999476,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064606080","doi":"10.1007/s00792-006-0506-3","title":"Microbial ecology and biodiversity in permafrost","year":2006,"lang":"en","type":"review","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Space Agency; McGill University","funders":"","keywords":"Permafrost; Biodiversity; Ecology; Microbial ecology; Ecosystem; Biogeochemical cycle; Environmental science; Microbial population biology; Extant taxon; Biogeochemistry; Habitat; Geomicrobiology; Earth science; Biology; Geology; Environmental biotechnology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.0303968859412744,"gpt":0.2750300115258443,"spread":0.2446331255845699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001839796,0.000204967,0.0006073329,0.0001226558,0.00009913219,0.0000214966,0.0002691779,0.0002749683,0.001732909],"category_scores_gemma":[0.00003074357,0.0001807935,0.0001000345,0.0001675102,0.0003840906,0.00007343673,0.0005613793,0.0003085572,0.002200894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002570491,"about_ca_system_score_gemma":0.00003163923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006944927,"about_ca_topic_score_gemma":0.005375183,"domain_scores_codex":[0.9986892,0.0001698998,0.0002085811,0.0004075007,0.00008745975,0.000437308],"domain_scores_gemma":[0.9995745,0.00009246932,0.00007258073,0.0001630262,0.000001578649,0.00009577852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000924661,0.0001746517,0.07372869,0.001239466,0.00002403532,0.0004632878,0.00005583741,0.000001820826,0.00002212835,0.00001259923,0.08628838,0.8379799],"study_design_scores_gemma":[0.0001249929,0.00002571844,0.02681963,0.00009958675,0.00002260087,0.00006871405,0.000002738238,0.000001445585,2.514474e-7,0.00004814949,0.972614,0.0001721713],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002953709,0.9927707,2.920975e-7,0.00008213679,0.0001121324,0.0003531583,0.0005243006,0.00001568397,0.003187924],"genre_scores_gemma":[0.00006404822,0.9989091,0.00005727406,0.00004399463,0.00005368383,0.000009453683,0.0002414863,0.000008835319,0.0006121186],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8863256,"threshold_uncertainty_score":0.9991797,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015546264","doi":"10.1007/s007920070032","title":"Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus","year":2000,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; Institute for Marine Biosciences","funders":"","keywords":"Sulfolobus solfataricus; Operon; Gene; Eukaryotic translation; Biology; Start codon; Genetics; Sulfolobus; Translation (biology); Archaea; Messenger RNA; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.01576266287040605,"gpt":0.224553288566965,"spread":0.2087906256965589,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009886714,0.00009127196,0.0001049724,0.00002482014,0.00004073132,0.000007049443,0.00008337014,0.00004433053,0.00001667876],"category_scores_gemma":[0.000008349876,0.00006495335,0.00002754805,0.00005098835,0.0000465392,7.798226e-7,0.00001848613,0.00003542566,8.46791e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003054303,"about_ca_system_score_gemma":0.000008873492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005262856,"about_ca_topic_score_gemma":0.0001593149,"domain_scores_codex":[0.9994622,0.00006006572,0.0001506033,0.0001541299,0.00007339451,0.0000996095],"domain_scores_gemma":[0.9997753,0.00002336043,0.00003713548,0.0001319517,0.00001764195,0.0000146223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008100404,0.00005322004,0.001782139,0.000009753527,0.00002062271,0.000001313733,0.0008328492,0.00005317461,0.9774475,0.0008616728,0.00002055913,0.01883616],"study_design_scores_gemma":[0.004388337,0.0007824044,0.4510235,0.00003770803,0.00009035441,0.00003931739,0.0008725895,0.0004480468,0.4965128,0.04260527,0.002675916,0.0005238043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969938,0.001652816,0.0002936404,0.0003601267,0.00003092834,0.0001468277,0.00001606084,0.000001580597,0.0005042595],"genre_scores_gemma":[0.9982302,0.001029517,0.0005327059,0.00007756156,0.0000568231,0.00000854985,0.00003926568,0.000007508567,0.00001784205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4809347,"threshold_uncertainty_score":0.2648721,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069776901","doi":"10.1007/s00792-012-0437-0","title":"Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":122,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of Alberta","funders":"Norges Forskningsråd; National Aeronautics and Space Administration; U.S. Department of Energy; Biological and Environmental Research; National Science Foundation","keywords":"Strain (injury); Biology; 16S ribosomal RNA; Xylose; Thiosulfate; Phospholipid; Mesophile; Biochemistry; Phylogenetic tree; Microbiology; Fermentation; Bacteria; Sulfur; Chemistry; Gene; Genetics; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02286961383989667,"gpt":0.2070961071417058,"spread":0.1842264933018092,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004347496,0.0002008805,0.0002249923,0.00002134709,0.0006428122,0.00001225855,0.001138452,0.0001259745,0.01070238],"category_scores_gemma":[0.00007667833,0.0001126833,0.0001616432,0.0002337307,0.001309615,0.0001488719,0.0008338508,0.0003126463,0.0004754595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005845727,"about_ca_system_score_gemma":0.00001434422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002463058,"about_ca_topic_score_gemma":0.001167748,"domain_scores_codex":[0.9986793,0.0002976762,0.0002550944,0.0001787298,0.0001710114,0.0004181866],"domain_scores_gemma":[0.9985883,0.0003098247,0.0001709299,0.0008628949,0.00001164629,0.00005635914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001377458,0.0008435096,0.4452653,0.00004783691,0.0001487678,0.000002541413,0.01205856,0.0003540686,0.4406809,0.007526144,0.09023302,0.002701642],"study_design_scores_gemma":[0.0001969048,0.00003306025,0.8656578,0.00001526102,0.00003270485,0.00001681567,0.0002928733,0.00001974406,0.01106,0.001398258,0.1211052,0.0001713561],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9709089,0.0005457774,0.000008932913,0.00292032,0.0004001431,0.0003740048,0.00001913938,0.00002809126,0.02479474],"genre_scores_gemma":[0.9976977,0.00008122463,0.0001014362,0.0009356178,0.0001917026,0.00001482272,0.000006892495,0.00001686363,0.0009537634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4296209,"threshold_uncertainty_score":0.990202,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1966960071","doi":"10.1007/s00792-009-0299-2","title":"Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":102,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Meltwater; Acidobacteria; Alphaproteobacteria; Library; Snow; Betaproteobacteria; Arctic; Biology; Ecology; Bacterioplankton; Physical geography; Bacteroidetes; Environmental science; Geography; 16S ribosomal RNA; Actinobacteria; Phytoplankton; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01090225251314135,"gpt":0.2079395962265841,"spread":0.1970373437134428,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001687353,0.0002712075,0.0002764811,0.00002045386,0.0002762392,0.00011536,0.0004491928,0.0002115084,0.05595466],"category_scores_gemma":[0.0001358633,0.0002361552,0.00008377132,0.00006395963,0.0009233325,0.0003451339,0.0005102852,0.0004726067,0.002849426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001117855,"about_ca_system_score_gemma":0.00002021045,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01932498,"about_ca_topic_score_gemma":0.01060017,"domain_scores_codex":[0.9979102,0.0001307166,0.0002403084,0.0007595879,0.000387465,0.0005717141],"domain_scores_gemma":[0.9987175,0.0004469872,0.0000797899,0.0003868563,0.000003220957,0.0003656043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006692854,0.00005919706,0.3652702,8.244327e-7,0.00003267689,0.00003414468,0.0003161588,0.000001419566,0.626018,0.000003930112,0.001057162,0.007139319],"study_design_scores_gemma":[0.0006124562,0.00004779552,0.9467651,0.00001089314,0.00002467357,0.00001211939,0.0001049689,0.0001456598,0.03043369,0.007368857,0.01416225,0.0003115283],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962056,0.0002392612,0.00003367799,0.0008204838,0.0003606647,0.0001764958,0.001730219,0.00003220285,0.0004014513],"genre_scores_gemma":[0.9927765,0.0001264825,0.005322103,0.0003063221,0.0005080554,0.000010704,0.0005892619,0.00002741005,0.0003331786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5955843,"threshold_uncertainty_score":0.997927,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073525642","doi":"10.1007/s00792-010-0336-1","title":"Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":91,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Universität Wien","keywords":"Biology; 16S ribosomal RNA; Genus; Taxonomy (biology); Botany; Zoology; Bacteria; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.00836750516879103,"gpt":0.2158571068143027,"spread":0.2074896016455116,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001666913,0.0001354726,0.000192916,0.00004403464,0.0001145387,0.00003874415,0.0001636233,0.0001516262,0.007143436],"category_scores_gemma":[0.0001365622,0.0001176896,0.00003989855,0.0001184652,0.0003400534,0.0003668462,0.0001609875,0.0002412664,0.0002572974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006258784,"about_ca_system_score_gemma":0.00003173384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001338714,"about_ca_topic_score_gemma":0.0007124199,"domain_scores_codex":[0.9988625,0.00005194187,0.0002452472,0.0003059002,0.0002300369,0.0003043489],"domain_scores_gemma":[0.9994248,0.00007508533,0.00006936854,0.0002164159,0.00001650237,0.0001978373],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008712726,0.00003701427,0.1939722,0.000003319393,0.00001267224,0.000003266655,0.0007797022,4.776177e-7,0.8043077,0.0001314489,0.000366362,0.0002987445],"study_design_scores_gemma":[0.0003340066,0.0000900086,0.957882,0.00001060606,0.00001582837,0.00001009122,0.00003182092,0.0007121038,0.03678371,0.001755169,0.0022358,0.0001388898],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979427,0.00002517641,0.0002267359,0.0004308894,0.0004128232,0.0001680881,0.00004779812,0.00001733246,0.0007283984],"genre_scores_gemma":[0.9974551,0.00004655022,0.00087022,0.00005290055,0.0003329189,0.000002930828,0.00004845289,0.00001277647,0.001178154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7675239,"threshold_uncertainty_score":0.9937642,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2017297739","doi":"10.1007/s00792-009-0237-3","title":"Biogenic methane production in formation waters from a large gas field in the North Sea","year":2009,"lang":"en","type":"article","venue":"Extremophiles","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Methanogenesis; Archaea; Salinity; Produced water; Methane; Environmental chemistry; Biodegradation; Nutrient; Seawater; Biology; Petroleum; Microbial ecology; Bacteria; Chemistry; Ecology; Environmental science; Environmental engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.01191486990780073,"gpt":0.2154225772831149,"spread":0.2035077073753142,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003229038,0.00009633562,0.0000951657,0.00005482382,0.00004459505,0.00001598567,0.0001631492,0.00005582673,0.0003103514],"category_scores_gemma":[0.00002747877,0.00006158923,0.00003281714,0.0003589337,0.00001865001,0.0002294669,0.00002657223,0.000161245,0.00016492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005375118,"about_ca_system_score_gemma":0.000002747313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006684719,"about_ca_topic_score_gemma":0.0008851243,"domain_scores_codex":[0.9990912,0.0001183847,0.0001966255,0.0002018565,0.0001727308,0.0002191924],"domain_scores_gemma":[0.9996874,0.00003702563,0.00005052023,0.0001961364,0.000002101049,0.00002676342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002253199,0.001061824,0.7810809,0.00002037834,0.00002848054,0.0001197121,0.0405209,0.01255467,0.04786502,0.0001242905,0.007680049,0.1087184],"study_design_scores_gemma":[0.001158467,0.0002285234,0.9506006,0.00005978761,0.00002563995,0.00002006219,0.001148638,0.007764736,0.01581968,0.01594873,0.006782162,0.000442928],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933727,0.0001498007,0.00003222457,0.004321449,0.00009875578,0.0002354138,0.000004039503,0.00001453328,0.001771049],"genre_scores_gemma":[0.9989431,0.0001460896,0.0001846806,0.0005188058,0.00006287099,0.000008221809,0.00004934433,0.000003975191,0.00008294186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1695197,"threshold_uncertainty_score":0.339813,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2077031479","doi":"10.1007/s00792-013-0571-3","title":"Review: the Antarctic Chlamydomonas raudensis: an emerging model for cold adaptation of photosynthesis","year":2013,"lang":"en","type":"review","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":74,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Psychrophile; Biology; Ecology; Photosynthesis; Microbial ecology; Ecosystem; Phytoplankton; Extreme environment; Botany; Nutrient; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.1204358771708961,"gpt":0.3505667716476249,"spread":0.2301308944767287,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008102252,0.0002948701,0.0009655982,0.00006422473,0.0001935766,0.00002271379,0.0007086277,0.0001457987,0.0006906468],"category_scores_gemma":[0.000291581,0.0001879511,0.0003903351,0.0002195573,0.0002253324,0.000221054,0.0001839509,0.0002071649,0.0002411165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001469994,"about_ca_system_score_gemma":0.00006957734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004563233,"about_ca_topic_score_gemma":0.0003752842,"domain_scores_codex":[0.9980047,0.0002772359,0.0005559851,0.0004295236,0.0002965838,0.0004360246],"domain_scores_gemma":[0.9984477,0.0003992049,0.0004025861,0.000599046,0.00002374918,0.0001277203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004262813,0.00006556269,0.000003474981,0.00824745,0.00005826888,0.000001175309,0.00009525941,0.0001478872,0.00005090069,0.00002376916,0.01527773,0.9760243],"study_design_scores_gemma":[0.00007031213,0.00004936367,0.000004903158,0.005388317,0.000329487,0.00001009157,0.00002692563,0.03310053,0.000008303824,0.000191979,0.9605975,0.000222288],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004367613,0.9967626,0.0003386157,0.0001715567,0.00005637372,0.002385496,0.00007000344,0.00001928516,0.00015238],"genre_scores_gemma":[0.0001353668,0.9972072,0.001030987,0.0002145927,0.00007058019,0.0007680535,0.00006258078,0.00004763027,0.0004630419],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9758019,"threshold_uncertainty_score":0.7664422,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014422859","doi":"10.1007/s00792-010-0319-2","title":"Cytoplasmic membrane fluidity and fatty acid composition of Acidithiobacillus ferrooxidans in response to pH stress","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":68,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"NOSM University; University of Guelph; Laurentian University","funders":"","keywords":"Membrane fluidity; Fatty acid; Biochemistry; Membrane; Membrane permeability; Biology; Polyunsaturated fatty acid; Bacterial outer membrane; Membrane lipids; Strain (injury); Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01168004902766299,"gpt":0.2274670923320302,"spread":0.2157870433043672,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003285246,0.0001451789,0.0002025779,0.0001862948,0.00004186973,0.00002446673,0.0001000756,0.00009112834,0.00005731961],"category_scores_gemma":[0.00005741957,0.0001397179,0.00003805369,0.0001533168,0.00003948372,0.0001425781,0.00003087885,0.0003010854,0.00001804904],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000245632,"about_ca_system_score_gemma":0.000009524059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002615368,"about_ca_topic_score_gemma":0.0002449194,"domain_scores_codex":[0.9992111,0.00007019155,0.0002437228,0.0001747477,0.0001354746,0.000164706],"domain_scores_gemma":[0.9995742,0.00009042049,0.00003045022,0.0001904744,0.00002239233,0.0000920844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001758297,0.00003326454,0.000932146,0.00005000928,0.000007733482,0.000008958533,0.0003326063,0.0005653784,0.9925241,0.00005513004,0.00002735027,0.005287525],"study_design_scores_gemma":[0.0004055151,0.00003282224,0.08219545,0.00007301948,0.000007419921,0.00003325617,0.00009736594,0.00696964,0.9093215,0.00004535427,0.0006232397,0.0001954349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975945,0.0001266786,0.0008358332,0.000171631,0.0004963441,0.000138795,0.00004020983,0.00009588202,0.0005001078],"genre_scores_gemma":[0.9979355,0.00003283481,0.00187691,0.00002519483,0.00006957405,0.000006088244,0.00001182855,0.00001665863,0.0000253909],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08320258,"threshold_uncertainty_score":0.5697532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2047777140","doi":"10.1007/s00792-006-0001-x","title":"Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern","year":2006,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Genome Atlantic","keywords":"Halophile; Biology; Salinity; Genus; 16S ribosomal RNA; Phylogenetic tree; Zoology; Botany; Ecology; Bacteria; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.008232740507128307,"gpt":0.2031460575962776,"spread":0.1949133170891493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002108813,0.0003847105,0.0004296874,0.00006392532,0.000369834,0.0000649278,0.0005832741,0.0002991626,0.01191283],"category_scores_gemma":[0.00002045988,0.0003789846,0.0001475201,0.0002304236,0.0003645805,0.0002557571,0.0005579983,0.0003828387,0.003018165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001083332,"about_ca_system_score_gemma":0.00001799214,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009542503,"about_ca_topic_score_gemma":0.009869855,"domain_scores_codex":[0.99779,0.0004748446,0.0004396493,0.000583904,0.0001446965,0.0005668598],"domain_scores_gemma":[0.9987451,0.0001851852,0.0001838563,0.0007616134,0.00001594044,0.0001082831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001787447,0.0002499663,0.007491487,0.000008257974,0.00004536623,0.00008950584,0.0004272632,0.0004190605,0.9773207,0.00003583727,0.01183687,0.001896932],"study_design_scores_gemma":[0.001993334,0.0004201194,0.8600039,0.0001075426,0.0001209752,0.000177208,0.00005776251,0.002307436,0.02251903,0.01882175,0.09187936,0.001591544],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993596,0.0001959018,0.000322564,0.0008276175,0.0003880841,0.0002440608,0.0001227912,0.0001689047,0.004134137],"genre_scores_gemma":[0.996068,0.00006558654,0.001191164,0.00126939,0.0002047196,0.0000101368,0.0005565581,0.00005169461,0.0005827723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9548017,"threshold_uncertainty_score":0.9998662,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2910754831","doi":"10.1007/s00792-018-01074-4","title":"Microbial community composition and dolomite formation in the hypersaline microbial mats of the Khor Al-Adaid sabkhas, Qatar","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Paleontology and Stratigraphy of Fossils","field":"Earth and Planetary Sciences","cited_by":62,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Qatar National Research Fund; Canada Foundation for Innovation","keywords":"Microbial mat; Dolomite; Anoxygenic photosynthesis; Geology; Microbial population biology; Carbonate; Anoxic waters; Stromatolite; Cyanobacteria; Sabkha; Salinity; Algal mat; Geochemistry; Ecology; Biology; Evaporite; Oceanography; Paleontology; Algae; Bacteria; Chemistry; Sedimentary rock","retraction":null,"screen_n_in":null,"score":{"opus":0.01706194465200472,"gpt":0.2112253482879148,"spread":0.1941634036359101,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004149249,0.00009706201,0.000142906,0.00005064313,0.0002302123,0.00002779432,0.000285164,0.00007069312,0.0000523263],"category_scores_gemma":[0.000009834045,0.00005794281,0.00005317307,0.000121339,0.0002122047,0.0002055438,0.000005286121,0.0002605768,0.000008437443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001799741,"about_ca_system_score_gemma":0.00001163596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001275612,"about_ca_topic_score_gemma":0.006196465,"domain_scores_codex":[0.9990072,0.0004648692,0.0002049268,0.00009298418,0.0000885144,0.0001415293],"domain_scores_gemma":[0.9994228,0.0002156894,0.0001046038,0.0002218894,0.00001561297,0.00001933539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004603231,0.0001591266,0.7140101,0.0001413455,0.00004017447,0.000006048389,0.009140876,0.0001872723,0.2385007,0.0002560726,0.003042035,0.03405588],"study_design_scores_gemma":[0.0004136555,0.00005642936,0.9963292,0.00004404613,0.00001042417,0.00008413807,0.0004881543,0.0004528244,0.001374782,0.000322633,0.000347682,0.00007604198],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934823,0.001073376,0.000006596877,0.001415079,0.0001784377,0.0002454101,0.0001332931,0.00000812975,0.003457383],"genre_scores_gemma":[0.9993346,0.00004354642,0.0002020098,0.0003231666,0.0000303633,4.40016e-7,0.00005953472,6.907002e-7,0.00000561516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2823191,"threshold_uncertainty_score":0.3457773,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157502688","doi":"10.1007/s00792-008-0176-4","title":"Identity and physiology of a new psychrophilic eukaryotic green alga, Chlorella sp., strain BI, isolated from a transitory pond near Bratina Island, Antarctica","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"National Science Council; University of Delaware","keywords":"Psychrophile; Chlorella; Biology; Botany; Algae; Chlorophyta; Extremophile; Photosynthesis; Ecology; Microorganism; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02278836509893602,"gpt":0.2486448567847093,"spread":0.2258564916857733,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001142501,0.000192669,0.0003245171,0.00005501949,0.000224007,0.00001650518,0.0002968812,0.0001353528,0.004132296],"category_scores_gemma":[0.00003594282,0.000176936,0.0000807703,0.0002275837,0.0009421679,0.0002948896,0.000148282,0.0002273901,0.0002645014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004540327,"about_ca_system_score_gemma":0.00005193876,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01594286,"about_ca_topic_score_gemma":0.006904952,"domain_scores_codex":[0.9984467,0.0001279218,0.0002717506,0.0004548419,0.0002555358,0.0004432606],"domain_scores_gemma":[0.9992548,0.00009185087,0.0000839718,0.0002998786,0.000008328005,0.0002611543],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006858421,0.0004150486,0.1680329,0.00004788845,0.0001500679,0.0002662789,0.006396525,0.00009664197,0.8096257,0.00003263008,0.006552341,0.007698167],"study_design_scores_gemma":[0.0009923634,0.0003956012,0.9895638,0.00001266651,0.00001918653,0.00009941001,0.00005792236,0.002589883,0.0006250413,0.004810878,0.0006275089,0.0002057647],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978364,0.0004706397,0.0001614064,0.0006852099,0.00008824772,0.0002131252,0.000101039,0.00002554555,0.0004184329],"genre_scores_gemma":[0.9984315,0.0003234563,0.0005510631,0.0001636363,0.000148213,0.000002996896,0.00003522498,0.00001879846,0.0003251279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8215309,"threshold_uncertainty_score":0.9967781,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018768541","doi":"10.1007/s00792-003-0353-4","title":"Optimum growth temperature and the base composition of open reading frames in prokaryotes","year":2003,"lang":"en","type":"article","venue":"Extremophiles","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"RNA; Biology; Nucleic acid; Purine; Ribosomal RNA; Transfer RNA; DNA; Base pair; Purine metabolism; Biochemistry; Genetics; Enzyme; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01071902955858922,"gpt":0.2382888087009636,"spread":0.2275697791423744,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003294584,0.0000912519,0.0001388661,0.00002661868,0.00005915199,0.0000431574,0.0001635566,0.00009082451,0.00001701603],"category_scores_gemma":[0.000119254,0.00006200652,0.0000303687,0.00006036667,0.00008768508,0.000007102461,0.00007178869,0.0000557999,6.500437e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002949044,"about_ca_system_score_gemma":0.000020622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000275561,"about_ca_topic_score_gemma":0.000004272879,"domain_scores_codex":[0.9993421,0.0001844113,0.0001341805,0.0001831714,0.00005826653,0.00009788841],"domain_scores_gemma":[0.9996742,0.00004046352,0.00005717959,0.0001744261,0.00003010952,0.00002362119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001384097,0.00002999411,0.0009975557,0.00001870029,0.0000133321,0.000002164152,0.00009201617,0.000005768585,0.9835913,0.01451547,0.0001489128,0.0004463608],"study_design_scores_gemma":[0.0007436532,0.00006081636,0.0006631156,0.00006326484,0.000007776534,0.00001592244,0.0001170737,0.00001613879,0.9881684,0.009712745,0.000334553,0.0000965046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941979,0.001912815,0.0002327711,0.0006727945,0.00004808572,0.0004646786,0.000008450775,0.0000037113,0.002458813],"genre_scores_gemma":[0.995555,0.0003121553,0.003780287,0.0001412885,0.00003595597,0.00003055619,0.00001410426,0.00001010625,0.0001205386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004802728,"threshold_uncertainty_score":0.2528552,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2047507752","doi":"10.1007/s00792-007-0087-9","title":"The impact of extremophiles on structural genomics (and vice versa)","year":2007,"lang":"en","type":"review","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institutes of Health; National Institute of General Medical Sciences; University of Georgia; University of Toronto; U.S. Department of Energy","keywords":"Structural genomics; Extremophile; Biology; Computational biology; Thermophile; Genome; Genetics; Genomics; Gene; Protein structure; Sequence (biology); Whole genome sequencing; Psychrophile; Evolutionary biology; Biochemistry; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04371997993465331,"gpt":0.3418923825588824,"spread":0.2981724026242291,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002384246,0.0005379541,0.0008437344,0.00008752698,0.0002437136,0.00004208746,0.0004363452,0.0003361273,0.000006026626],"category_scores_gemma":[0.00007128823,0.000327341,0.0006262357,0.0001037027,0.0003141526,6.894211e-7,0.0002813224,0.0001997065,0.000005772418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000526815,"about_ca_system_score_gemma":0.0001933147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003847131,"about_ca_topic_score_gemma":0.00001647907,"domain_scores_codex":[0.9983461,0.00009154226,0.0005272093,0.000506624,0.0001440516,0.0003844332],"domain_scores_gemma":[0.9985795,0.0001886918,0.0003997835,0.000652882,0.0000776619,0.00010145],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007753878,0.00001999624,0.00005480398,0.0005997944,0.0008382632,0.000004679476,0.00005953489,0.00002702885,0.001790599,0.0001580341,0.0008846783,0.9954851],"study_design_scores_gemma":[0.0002318128,0.0004063928,0.0007823678,0.0004726826,0.0002304036,0.0000681691,0.00003956866,0.000008199776,0.0001345564,0.0002818746,0.9968662,0.0004777743],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03223394,0.9660062,0.000003206442,0.00001286414,0.0002497841,0.0003931804,0.0002114865,0.000003434477,0.0008859455],"genre_scores_gemma":[0.0128566,0.9859671,0.0001254045,0.0000132003,0.0006886938,0.00001189184,0.00008319824,0.00006674838,0.0001871877],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9959815,"threshold_uncertainty_score":0.9999179,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982961154","doi":"10.1007/s00792-011-0426-8","title":"Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Council for Higher Education; Natural Environment Research Council; Yükseköğretim Kurulu; Sight Research UK","keywords":"Glacier; Polar; Microbial ecology; Ecology; Total organic carbon; Carbon fibers; Diversity (politics); Earth science; Dissolved organic carbon; Geology; Environmental science; Physical geography; Environmental chemistry; Oceanography; Geography; Chemistry; Paleontology; Biology; Bacteria; Materials science; Physics","retraction":null,"screen_n_in":null,"score":{"opus":0.01994756072680938,"gpt":0.2326445982972964,"spread":0.2126970375704871,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003280745,0.0001292975,0.0001376119,0.00003870222,0.0001921099,0.00001602235,0.0002013354,0.00004518841,0.0007964964],"category_scores_gemma":[0.0000451628,0.0001082821,0.00001955317,0.0002297446,0.0001750938,0.0003054678,0.0003232133,0.0001750418,0.0001383966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002511006,"about_ca_system_score_gemma":0.000016274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002056272,"about_ca_topic_score_gemma":0.002101017,"domain_scores_codex":[0.9986174,0.00007500566,0.0001095853,0.0002178501,0.0002669543,0.0007132724],"domain_scores_gemma":[0.9995345,0.0000510377,0.00004306919,0.0001376024,0.000004360909,0.0002294435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003240088,0.00009747333,0.9864885,0.000004037525,0.00001034245,0.00002605026,0.0005855039,0.00003383273,0.01236587,0.00001169633,0.00002629718,0.0003179617],"study_design_scores_gemma":[0.0006727496,0.00008190011,0.9951854,0.00001080985,0.000009426991,0.00001909111,0.0002201171,0.0004907976,0.002979968,0.0001347979,0.00004627131,0.0001486389],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949422,0.0001526195,0.000006734714,0.0001007389,0.00006140435,0.00020769,0.000004081076,0.0000276311,0.004496884],"genre_scores_gemma":[0.9995617,0.000008912219,0.0001708902,0.00005565049,0.00005614754,0.000004362954,0.000006122317,0.00001163098,0.0001245561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009385899,"threshold_uncertainty_score":0.8721077,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091364937","doi":"10.1007/s00792-012-0445-0","title":"Hydroxybutyrate prevents protein aggregation in the halotolerant bacterium Pseudomonas sp. CT13 under abiotic stress","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Halotolerance; Polyhydroxybutyrate; Extremophile; Osmolyte; Polyhydroxyalkanoates; Pseudomonas; Chemical chaperone; Bacteria; Biochemistry; Chemistry; Enzyme; Biology; Mutant; Thermophile","retraction":null,"screen_n_in":null,"score":{"opus":0.01103712041554079,"gpt":0.224229193246983,"spread":0.2131920728314422,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002886832,0.0001565279,0.0001097164,0.00004324719,0.00005382033,0.00002688118,0.0001586012,0.0001086504,0.00001337643],"category_scores_gemma":[0.0000238696,0.0001150894,0.00005473621,0.0001078002,0.00003876021,0.00001385667,0.00003609826,0.0001027575,0.00001675175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001283571,"about_ca_system_score_gemma":0.00001501894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004307455,"about_ca_topic_score_gemma":0.00001660034,"domain_scores_codex":[0.9991013,0.0001030222,0.0001841983,0.0002251921,0.0001097408,0.0002765247],"domain_scores_gemma":[0.9995581,0.000002868222,0.00006403387,0.0003092036,0.00002225885,0.00004352742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002053022,0.0001293953,0.0008348053,0.00002881551,0.00001366673,8.408131e-7,0.0002009411,0.0001113455,0.9965675,0.00008679835,0.0001244535,0.001880948],"study_design_scores_gemma":[0.0003774445,0.000060455,0.03206002,0.00008193393,0.00001689818,0.00004477152,0.0001175128,0.00007073349,0.9552402,0.00008902307,0.01158767,0.0002533446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967428,0.001654248,0.0003530817,0.0004263527,0.0003136936,0.0003713215,0.00001338377,0.00001527796,0.0001097921],"genre_scores_gemma":[0.9979548,0.00008610725,0.0002625585,0.0000974839,0.0009598625,0.00003227627,0.0001023098,0.00001872048,0.0004858432],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04132727,"threshold_uncertainty_score":0.4693208,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1966667695","doi":"10.1007/s00792-005-0483-y","title":"Isolation and characterization of novel organic solvent-tolerant bacteria","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences","keywords":"Bacteria; Microorganism; Organic solvent; Solvent; Biology; Chemistry; Microbiology; Isolation (microbiology); Environmental chemistry; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.00802089661703892,"gpt":0.2032022450074315,"spread":0.1951813483903926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005472573,0.00006710671,0.00007414084,0.00002638461,0.00002274899,0.000007957298,0.00003319076,0.0000588265,0.00001808393],"category_scores_gemma":[0.00001193185,0.00006680332,0.00001933896,0.00004222318,0.00001938527,0.000005626043,0.00002007479,0.00002348344,0.000001678385],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003147482,"about_ca_system_score_gemma":0.000008784779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001917842,"about_ca_topic_score_gemma":0.000002815057,"domain_scores_codex":[0.9996223,0.000007285682,0.0001227709,0.0001440623,0.00003396851,0.00006959761],"domain_scores_gemma":[0.9997799,6.304336e-7,0.00005421905,0.000109269,0.0000349907,0.00002093548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001530325,0.00003399469,0.0001142594,0.000011799,0.000008655222,2.948786e-8,0.00003593491,0.00001674949,0.9942327,0.00002371307,0.00001944432,0.005487465],"study_design_scores_gemma":[0.0002470957,0.0000376052,0.02314213,0.00001263837,0.000008854026,0.00001392997,0.000004925063,0.0005260878,0.9637138,0.000001679388,0.01220419,0.00008702017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883389,0.0001855778,0.0110505,0.0001861721,0.0001376018,0.00006021863,0.00001365113,0.000009488728,0.00001788252],"genre_scores_gemma":[0.9962631,0.0001865554,0.002526171,0.00002779383,0.0006607578,0.000001477684,0.0001462563,0.00001019864,0.0001777076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03051881,"threshold_uncertainty_score":0.2724161,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144458938","doi":"10.1007/s00792-005-0450-7","title":"Aluminum-tolerant Pseudomonas fluorescens: ROS toxicity and enhanced NADPH production","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"NOSM University; Laurentian University","funders":"","keywords":"Pseudomonas fluorescens; Toxicity; Microbiology; Chemistry; Pseudomonas; Microbial ecology; Biology; Bacteria; Organic chemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01693100792252254,"gpt":0.2105841810091197,"spread":0.1936531730865972,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001735617,0.0002014645,0.0002298404,0.00001343233,0.0003713305,0.00008560538,0.000149778,0.0001144638,0.0003345904],"category_scores_gemma":[0.00004125185,0.00008535141,0.0000717033,0.0001441701,0.0001324954,0.0002909018,0.00004944459,0.0001447222,0.00006491933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000180189,"about_ca_system_score_gemma":0.000005918011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006415378,"about_ca_topic_score_gemma":0.0005232507,"domain_scores_codex":[0.9987127,0.00004585068,0.0002487647,0.000451774,0.0002118887,0.0003290226],"domain_scores_gemma":[0.9996139,0.00006717195,0.00008911043,0.00006801192,0.00004695241,0.0001148837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004762793,0.0001565754,0.000482715,0.000007322482,0.000009403414,0.00000469664,0.0001915689,0.00001225198,0.7619997,0.0001611312,0.00131154,0.2356155],"study_design_scores_gemma":[0.0007701484,0.0005301311,0.1612811,0.0002861934,0.00004490406,0.0002192205,0.0008619459,0.001311886,0.703428,0.002068215,0.1278936,0.001304594],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933727,0.0006881994,0.000008182594,0.004232122,0.0001682695,0.0002024197,0.00004016382,0.0001061996,0.001181787],"genre_scores_gemma":[0.9960104,0.000376716,0.0003409116,0.0004065199,0.001855523,0.00001316999,0.00002564897,0.00000179566,0.0009693074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2343109,"threshold_uncertainty_score":0.366353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019031059","doi":"10.1007/s00792-012-0468-6","title":"Desulfohalophilus alkaliarsenatis gen. nov., sp. nov., an extremely halophilic sulfate- and arsenate-respiring bacterium from Searles Lake, California","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"U.S. Geological Survey; National Aeronautics and Space Administration","keywords":"Arsenate; Biology; Extreme environment; Sulfate; Halophile; Strain (injury); Bacteria; Botany; Chemistry; Arsenic","retraction":null,"screen_n_in":null,"score":{"opus":0.01980418923951614,"gpt":0.2357441789272114,"spread":0.2159399896876953,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005590357,0.0004817322,0.0004119468,0.0001600029,0.0003409124,0.0001412068,0.0004285705,0.0002662535,0.003264124],"category_scores_gemma":[0.0001102901,0.0004303553,0.0001072875,0.0003440941,0.0003762831,0.001138219,0.0004200122,0.0002949985,0.0007383482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001130098,"about_ca_system_score_gemma":0.00001653062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009732245,"about_ca_topic_score_gemma":0.00108113,"domain_scores_codex":[0.9971312,0.0001798462,0.000542182,0.000735055,0.0005782393,0.0008334877],"domain_scores_gemma":[0.9984028,0.0001232522,0.0002274779,0.0006569623,0.00003246522,0.0005570464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001046337,0.0005142277,0.1944302,0.00004589513,0.0000737529,0.0001229671,0.002722532,0.00005349878,0.7268433,0.0002270676,0.005763228,0.06909874],"study_design_scores_gemma":[0.001416137,0.0001720444,0.7327341,0.000122687,0.0001324678,0.0001362141,0.0004620885,0.001699302,0.07950867,0.004122282,0.1774943,0.001999757],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932104,0.0007906841,0.0006727783,0.0007137883,0.0003102485,0.0004040364,0.000417929,0.0003427726,0.0031373],"genre_scores_gemma":[0.9912927,0.0003171523,0.006340987,0.000409223,0.0007689718,0.00003708823,0.0003306178,0.00008141732,0.0004219007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6473346,"threshold_uncertainty_score":0.9998148,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131889718","doi":"10.1007/s00792-003-0329-4","title":"Desulfurobacterium crinifex sp. nov., a novel thermophilic, pinkish-streamer forming, chemolithoautotrophic bacterium isolated from a Juan de Fuca Ridge hydrothermal vent and amendment of the genus Desulfurobacterium","year":2003,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":42,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Thermophile; Hydrothermal vent; Hydrothermal circulation; Biology; Sulfur; 16S ribosomal RNA; Strain (injury); Ridge; Genus; Bacteria; Botany; Chemistry; Paleontology; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01231623846740448,"gpt":0.2073900843360755,"spread":0.195073845868671,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003000979,0.0004144825,0.0004577947,0.00004869409,0.0003357986,0.00003646158,0.0006265449,0.0002507141,0.004421979],"category_scores_gemma":[0.00006243365,0.0003383798,0.00017429,0.0002211127,0.0007249434,0.0001745458,0.0005019652,0.0004458423,0.00007815591],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001949841,"about_ca_system_score_gemma":0.00006805552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001195222,"about_ca_topic_score_gemma":0.0003568939,"domain_scores_codex":[0.9977324,0.0004084724,0.00051447,0.0005136018,0.0001668181,0.0006642456],"domain_scores_gemma":[0.9984888,0.0001346643,0.000345791,0.0008356546,0.00002175179,0.0001733507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001615446,0.0003870253,0.01270274,0.00002079949,0.00007551053,0.000008598192,0.001418732,0.00006333918,0.9839376,0.000122367,0.0002378158,0.0008638986],"study_design_scores_gemma":[0.002456021,0.0004720736,0.7818322,0.0001529142,0.0001976595,0.0003258383,0.0001646049,0.0005726657,0.1768826,0.001822812,0.0340705,0.001050151],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964235,0.0001411986,0.000120008,0.0003407188,0.0002978004,0.0004427338,0.0002044301,0.00004453052,0.001985058],"genre_scores_gemma":[0.9980684,0.0000839104,0.0007378618,0.0006862036,0.00008049027,0.00003031809,0.00005733365,0.00004831452,0.0002071582],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8070551,"threshold_uncertainty_score":0.9999068,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994155249","doi":"10.1007/s00792-013-0543-7","title":"An inter-order horizontal gene transfer event enables the catabolism of compatible solutes by Colwellia psychrerythraea 34H","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Compute Canada; University of Washington; National Science Foundation","keywords":"Sarcosine; Psychrophile; Betaine; Biology; Biochemistry; Thermus thermophilus; Osmoprotectant; Chemistry; Glycine; Gene; Proline; Escherichia coli; Amino acid","retraction":null,"screen_n_in":null,"score":{"opus":0.007230005376687155,"gpt":0.2177614580076294,"spread":0.2105314526309423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000168098,0.000176569,0.0002341068,0.00002218647,0.0002785603,0.00001890769,0.0006576485,0.0001101839,0.01087511],"category_scores_gemma":[0.000007087847,0.000129152,0.00006651536,0.0001402349,0.000590081,0.0002130583,0.0001302931,0.0002183724,0.0003701158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002887202,"about_ca_system_score_gemma":0.00001182874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005080567,"about_ca_topic_score_gemma":0.00264963,"domain_scores_codex":[0.9988102,0.000278995,0.0002674274,0.000239114,0.0001002301,0.0003039799],"domain_scores_gemma":[0.9992409,0.0001029741,0.00005716163,0.0005034319,0.00001867978,0.00007685622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003401765,0.0005169656,0.004946799,0.000009807309,0.00003137317,9.024562e-7,0.001875684,0.0002397838,0.8802568,0.0002106968,0.1071766,0.004700549],"study_design_scores_gemma":[0.003278513,0.002687816,0.427742,0.0001080463,0.0001722244,0.00008548367,0.003684373,0.006045641,0.2996292,0.02947037,0.2249532,0.002143147],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962697,0.0003339509,0.0008246332,0.0007730257,0.0002071176,0.0003440946,0.00006338934,0.00002572982,0.001158342],"genre_scores_gemma":[0.9984579,0.0001420695,0.0004046114,0.0004799496,0.00005737891,0.00003012053,0.0001203028,0.00001595564,0.000291728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5806276,"threshold_uncertainty_score":0.9900291,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045320669","doi":"10.1007/s00792-008-0156-8","title":"Novel halophilic aerobic anoxygenic phototrophs from a Canadian hypersaline spring system","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba","funders":"","keywords":"Anoxygenic photosynthesis; Phototroph; Halophile; Biology; Halotolerance; Microbial mat; Botany; Halobacterium; Ecology; Salinity; Bacteria; Photosynthesis","retraction":null,"screen_n_in":null,"score":{"opus":0.01746688183323265,"gpt":0.1846465727159236,"spread":0.167179690882691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009749216,0.0001983121,0.0002528469,0.00006704561,0.0006057012,0.000009610658,0.0004856394,0.0001678453,0.004487222],"category_scores_gemma":[0.00002145371,0.0002014158,0.00008735596,0.0001903063,0.0002965856,0.0001056734,0.0001899343,0.0002762537,0.002146384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002962384,"about_ca_system_score_gemma":0.00006047282,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4251446,"about_ca_topic_score_gemma":0.4566519,"domain_scores_codex":[0.9987918,0.0001053669,0.0002194753,0.0003446548,0.00009353089,0.0004452337],"domain_scores_gemma":[0.9990916,0.00008038439,0.00006778434,0.0005186292,0.000008033907,0.0002335834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000562688,0.0001506064,0.05122111,0.00001271446,0.00006965928,0.000200763,0.001313364,0.001156037,0.9392481,0.00021451,0.005774852,0.0005819532],"study_design_scores_gemma":[0.001243923,0.0001365671,0.9469978,0.0000676386,0.00004956748,0.0004551851,0.0002504351,0.002524693,0.003384296,0.0002671694,0.0437278,0.0008949843],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932535,0.0001671751,0.00004026746,0.0002171566,0.0002875067,0.0001643069,0.00004985889,0.00008180862,0.005738378],"genre_scores_gemma":[0.9975027,0.00003106187,0.001450387,0.0004861601,0.0001460069,0.000009624824,0.0000610438,0.0000233694,0.0002895904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9358639,"threshold_uncertainty_score":0.9986306,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018479385","doi":"10.1007/s00792-008-0150-1","title":"A novel metabolic network leads to enhanced citrate biogenesis in Pseudomonas fluorescens exposed to aluminum toxicity","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Laurentian University","funders":"","keywords":"Aconitase; Citrate synthase; Pseudomonas fluorescens; Malate dehydrogenase; Biochemistry; Isocitrate dehydrogenase; Phosphoenolpyruvate carboxykinase; Fumarase; Biology; NAD+ kinase; Citric acid cycle; ATP citrate lyase; Dehydrogenase; Metabolite; Malic enzyme; Glyoxylate cycle; Enzyme; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04145036157456975,"gpt":0.2300132014707297,"spread":0.1885628398961599,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002348792,0.0003137777,0.0004912878,0.00004669901,0.0003641849,0.00005420182,0.000421461,0.0001523921,0.0002929103],"category_scores_gemma":[0.00005683526,0.0001494132,0.0001551749,0.001040634,0.00007768854,0.0001402185,0.0001097424,0.0001398836,0.0001893992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002329979,"about_ca_system_score_gemma":0.00001784866,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003420751,"about_ca_topic_score_gemma":0.002769245,"domain_scores_codex":[0.997853,0.00006443139,0.0004243906,0.0006144128,0.0003022412,0.0007415455],"domain_scores_gemma":[0.9992902,0.0001412007,0.0000808273,0.0001166369,0.00005875686,0.000312395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001284909,0.000192275,0.005625689,0.000002812529,0.00001015349,0.00003483375,0.0003257687,0.0003060406,0.9800963,0.0001309691,0.001412671,0.01173395],"study_design_scores_gemma":[0.0004556253,0.0004251444,0.5581946,0.0001417881,0.00001479881,0.00006394482,0.0001993644,0.00009385472,0.4212226,0.0002113915,0.01807409,0.000902729],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965465,0.0003200036,0.00008766726,0.001509515,0.0002065215,0.0004020681,0.0001530584,0.00008876878,0.0006858762],"genre_scores_gemma":[0.9947505,0.0001897763,0.001495221,0.001899418,0.00108725,0.00004847161,0.00002981241,0.000003859344,0.0004956878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5588737,"threshold_uncertainty_score":0.6092895,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2613781774","doi":"10.1007/s00792-017-0941-3","title":"Aspergillus atacamensis and A. salisburgensis: two new halophilic species from hypersaline/arid habitats with a phialosimplex-like morphology","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Victoria Park","funders":"","keywords":"Biology; Aspergillus; Halophile; Botany; Subgenus; Microbiology; Taxonomy (biology); Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0231323817681396,"gpt":0.2428284363751589,"spread":0.2196960546070192,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007245353,0.0003434298,0.0003619554,0.00005619847,0.0003944624,0.0001520469,0.0003445503,0.0001523107,0.00008511737],"category_scores_gemma":[0.0001361874,0.0002867208,0.0001108715,0.00003626338,0.0003606533,0.00002107776,0.0002764518,0.0001011671,0.00002163059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000106197,"about_ca_system_score_gemma":0.00009727811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000632467,"about_ca_topic_score_gemma":0.0006765854,"domain_scores_codex":[0.9984359,0.00005444342,0.0002251782,0.0007232407,0.0001755076,0.0003857099],"domain_scores_gemma":[0.998484,0.00003525395,0.000182208,0.0009218221,0.00007362869,0.000303093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004061195,0.00006137109,0.05140507,0.000009654777,0.0002163053,0.0002607444,0.00005294198,0.00001263612,0.9291859,0.0001412388,0.01613788,0.002110084],"study_design_scores_gemma":[0.003831291,0.0005275813,0.8582217,0.0001095797,0.0004193237,0.0004238621,0.0002184262,0.0001106914,0.03057251,0.001214867,0.1030753,0.001274827],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907455,0.004728111,0.0001101783,0.001133811,0.0002668915,0.000176445,0.001854991,0.00003325726,0.0009507554],"genre_scores_gemma":[0.9934195,0.001055188,0.001644179,0.0006986154,0.001202262,0.000009869766,0.0007549068,0.00004837179,0.001167129],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8986135,"threshold_uncertainty_score":0.9999585,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048274654","doi":"10.1007/s00792-011-0417-9","title":"Microbial diversity and activity in hypersaline high Arctic spring channels","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; Biotechnology Research Institute; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Microbial population biology; Methanogenesis; Microbial ecology; Methanosaeta; Microcosm; Halomonas; Ecology; Archaea; Halophile; Microbial mat; Extremophile; Arctic; Environmental chemistry; Microorganism; Bacteria; Chemistry; Methane","retraction":null,"screen_n_in":null,"score":{"opus":0.02138813535357125,"gpt":0.212625629735917,"spread":0.1912374943823457,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000202957,0.00008830287,0.0001237656,0.00002779371,0.0003488699,0.000003991956,0.0001335928,0.0000783367,0.001392909],"category_scores_gemma":[0.00002090618,0.00008959004,0.00002011056,0.00007398556,0.0001881363,0.0001980894,0.00132741,0.0001861119,0.0001064559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006758798,"about_ca_system_score_gemma":0.000001659386,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006726711,"about_ca_topic_score_gemma":0.002160846,"domain_scores_codex":[0.9993806,0.0001332692,0.00006360952,0.0001295312,0.00003616542,0.0002568004],"domain_scores_gemma":[0.9996934,0.00007789981,0.00003094933,0.0001349235,0.000001774357,0.00006103421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005558858,0.0001883907,0.8509416,0.000009678682,0.000006783714,0.000003308437,0.001691183,0.0001030993,0.1456301,0.00009272863,0.0002152799,0.001062207],"study_design_scores_gemma":[0.0002515593,0.00002253367,0.9963702,0.000007217339,0.000006029954,0.000007123457,0.00002847013,0.00004146624,0.001681126,0.0005011875,0.00096508,0.0001180321],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991127,0.00004854403,0.00001329895,0.0002397072,0.0002206657,0.00007367838,0.000003407381,0.00001326304,0.0002747285],"genre_scores_gemma":[0.9994923,0.00002967795,0.0001487727,0.0001651931,0.00008526059,0.000001149215,0.000003144023,0.000004705495,0.00006977426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1454286,"threshold_uncertainty_score":0.9998876,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050630753","doi":"10.1007/s00792-014-0703-4","title":"Evidence of in situ microbial activity and sulphidogenesis in perennially sub-0 °C and hypersaline sediments of a high Arctic permafrost spring","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; McGill University","funders":"","keywords":"Permafrost; Extreme environment; Methanogenesis; Archaea; Geomicrobiology; Halophile; Microbial population biology; Psychrophile; Microbial mat; Arctic; Environmental chemistry; Microcosm; Ecology; Biogeochemical cycle; Chloroflexi (class); Extremophile; Microbial ecology; Microorganism; Oceanography; Biology; Methane; Geology; 16S ribosomal RNA; Chemistry; Bacteria; Proteobacteria; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.02046252510330976,"gpt":0.242075122649151,"spread":0.2216125975458413,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004146213,0.00008513513,0.0002050998,0.00008255142,0.00002401319,0.000006736203,0.0001046331,0.0000504163,0.000078732],"category_scores_gemma":[0.0002024769,0.00008242701,0.00001725018,0.0001220852,0.0002727956,0.0001696814,0.0002347339,0.00008460154,0.000005117221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006052297,"about_ca_system_score_gemma":0.00001203583,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.008797898,"about_ca_topic_score_gemma":0.02027819,"domain_scores_codex":[0.9991491,0.000116504,0.0001589202,0.0002274222,0.0001284423,0.0002196171],"domain_scores_gemma":[0.9995751,0.0001742477,0.00005753973,0.0001215606,0.000005305473,0.00006625841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007211997,0.00004452936,0.45309,0.00003181304,0.000001865887,0.000002934392,0.0001179783,0.0000192284,0.5437982,0.000004586414,0.000001695969,0.002815066],"study_design_scores_gemma":[0.0004580781,0.00009827566,0.9366833,0.00008699289,0.000003604472,0.000005248017,0.00001646617,0.0002965766,0.06217521,0.00009966568,0.000008334989,0.00006825846],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993441,0.0002350344,0.000007943547,0.0002305688,0.00002029205,0.0001139131,0.000008723936,0.000002661804,0.00003672602],"genre_scores_gemma":[0.9994337,0.0002865883,0.0002290771,0.00001659007,0.0000151061,0.000002910389,0.000001057169,0.000006068205,0.000008899332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4835933,"threshold_uncertainty_score":0.9978026,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2608407480","doi":"10.1007/s00792-017-0933-3","title":"In-depth characterization of bacterial and archaeal communities present in the abandoned Kettara pyrrhotite mine tailings (Morocco)","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":31,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canada Research Chairs; International Development Research Centre; Institut de Recherche pour le Développement","keywords":"Archaea; Tailings; Firmicutes; Proteobacteria; Acid mine drainage; Chloroflexi (class); Phylum; Acidithiobacillus; Microbial population biology; Biology; Pyrrhotite; Stenotrophomonas; Phylogenetic diversity; Bioleaching; Environmental chemistry; Geology; Geochemistry; Bacteria; Chemistry; Phylogenetics; Pyrite; 16S ribosomal RNA","retraction":null,"screen_n_in":null,"score":{"opus":0.02855529935954475,"gpt":0.2510754322540287,"spread":0.2225201328944839,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002678345,0.000105876,0.0001668671,0.00009636549,0.00008717284,0.0000753385,0.000208417,0.00004952668,0.00003911777],"category_scores_gemma":[0.00002357245,0.00008119184,0.00002652708,0.00003523309,0.00008917991,0.0003097719,0.00004637318,0.0001715236,0.000001855655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001041314,"about_ca_system_score_gemma":0.000004773236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005374474,"about_ca_topic_score_gemma":0.0008054805,"domain_scores_codex":[0.9994149,0.00006436192,0.0002227373,0.00007511669,0.00009916376,0.0001236875],"domain_scores_gemma":[0.9995686,0.00006025445,0.00007792771,0.0002604277,0.00001210762,0.0000206828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001240119,0.00009064732,0.01822216,0.0001898684,0.00002289097,0.00001664109,0.01075107,0.00015693,0.9490249,0.0003318918,0.00006067121,0.02100831],"study_design_scores_gemma":[0.001198165,0.00003733872,0.9599984,0.0001877633,0.00001095497,0.0000220291,0.0008645637,0.01807879,0.01081097,0.0002632769,0.008292923,0.0002348644],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979749,0.0001019988,0.00004282987,0.0004039282,0.0003084479,0.000142621,0.000009468506,0.00001911716,0.0009967008],"genre_scores_gemma":[0.9993362,0.0002968335,0.00005537328,0.00002595744,0.0001658568,0.000008180398,0.00004327241,0.00001102928,0.00005723409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9417762,"threshold_uncertainty_score":0.3310907,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2953875568","doi":"10.1007/s00792-019-01105-8","title":"Purification and biochemical characterization of a novel thermostable and halotolerant subtilisin SAPN, a serine protease from Melghiribacillus thermohalophilus Nari2AT for chitin extraction from crab and shrimp shell by-products","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ministère de l'Enseignement Supérieur, de la Recherche, de la Science et de la Technologie","keywords":"PMSF; Chitin; Shrimp; Subtilisin; Biochemistry; Serine protease; Litopenaeus; Biology; Proteases; Portunus trituberculatus; Protease; Chromatography; Chemistry; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.009796978017043458,"gpt":0.2164272768442038,"spread":0.2066302988271604,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001203452,0.0002032548,0.000214821,0.00004117261,0.00006744079,0.00004935468,0.00006614443,0.0001731277,0.00002260806],"category_scores_gemma":[0.00006949739,0.0001958086,0.00002722023,0.00007062739,0.00008553607,0.00003863833,0.00005368982,0.00006984398,0.000001090487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009342686,"about_ca_system_score_gemma":0.00002729099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006301931,"about_ca_topic_score_gemma":0.000002637689,"domain_scores_codex":[0.9987944,0.00003972791,0.0002820942,0.0006335785,0.0001041808,0.0001460257],"domain_scores_gemma":[0.999272,0.00001834126,0.0002249181,0.0002872544,0.0001303708,0.00006713546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004632629,0.0001308036,0.0009155902,0.00007561689,0.00003420872,1.599505e-7,0.0001567359,0.000001285263,0.9950612,0.00002516382,0.00005331688,0.003082647],"study_design_scores_gemma":[0.001283033,0.0001268918,0.03599479,0.00004553177,0.00003217942,0.00001064343,0.00005867758,0.00123495,0.9575247,0.00007104898,0.003394172,0.0002234533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936183,0.001325543,0.002266685,0.001040795,0.0001195838,0.0009453287,0.000649179,0.00001957142,0.00001500923],"genre_scores_gemma":[0.9931737,0.0006619283,0.001326104,0.0000971635,0.0002641437,0.00005628702,0.004183777,0.00003479979,0.0002020622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03753658,"threshold_uncertainty_score":0.7984842,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2021950406","doi":"10.1007/s00792-011-0416-x","title":"Effects of different ion compositions on growth of obligately halophilic protozoan Halocafeteria seosinensis","year":2011,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Universidad Nacional del Sur; Seoul National University; Dalhousie University; Kyungpook National University","keywords":"Halophile; Salinity; Halotolerance; Extremophile; Biology; Extreme environment; Sulfate; Obligate; Environmental chemistry; Ecology; Chemistry; Bacteria; Microorganism","retraction":null,"screen_n_in":null,"score":{"opus":0.01683187925221492,"gpt":0.2032910285627,"spread":0.1864591493104851,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006972627,0.0001457872,0.0002681749,0.00005787514,0.0001052599,0.000002000856,0.0002690457,0.00009648154,0.001180495],"category_scores_gemma":[0.00002537474,0.000122912,0.00008238008,0.0001215651,0.0004188535,0.00005397231,0.0001689111,0.000131234,0.00007816531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002789198,"about_ca_system_score_gemma":0.000004396385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003536784,"about_ca_topic_score_gemma":0.0001070468,"domain_scores_codex":[0.9991025,0.0002426239,0.0002302724,0.0001750282,0.00008254343,0.0001670372],"domain_scores_gemma":[0.9993691,0.0001511027,0.0001423935,0.0002728758,0.00001428642,0.00005028608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001911201,0.0008677933,0.006356404,0.00008509089,0.00002728808,0.000004370167,0.0008523923,0.000005737878,0.9892924,0.001437913,0.0005451078,0.0003343834],"study_design_scores_gemma":[0.000278358,0.0006238591,0.4856757,0.00006780724,0.00002086579,0.000004337077,0.000009226655,0.00001483559,0.5049504,0.008221697,0.00002932434,0.0001035346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950418,0.00001610053,0.00001995035,0.00007508717,0.0001074803,0.0004607742,0.00001224823,0.00002079949,0.004245716],"genre_scores_gemma":[0.9995266,0.00002070058,0.0002547212,0.00009296092,0.00001759257,0.00002681764,0.00002193791,0.00001036866,0.00002833738],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.484342,"threshold_uncertainty_score":0.9997326,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2547865194","doi":"10.1007/s00792-016-0888-9","title":"Genetic background of enhanced radioresistance in an anhydrobiotic insect: transcriptional response to ionizing radiations and desiccation","year":2016,"lang":"en","type":"article","venue":"Extremophiles","topic":"Tardigrade Biology and Ecology","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"McGill University","keywords":"Cryptobiosis; Desiccation; Ionizing radiation; Radioresistance; Biology; Desiccation tolerance; Gene; Genetics; Cell biology; Irradiation; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.03319802690589595,"gpt":0.2249933743109598,"spread":0.1917953474050638,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001837263,0.00007606002,0.0001205339,0.00003372277,0.00007701053,0.000008105872,0.00009227624,0.00008368757,0.00009496576],"category_scores_gemma":[0.00004617204,0.00003186152,0.00002351471,0.0001673179,0.00008935862,0.0001068581,0.0000102607,0.00003133213,0.00000770697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000311603,"about_ca_system_score_gemma":0.0000104207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003292718,"about_ca_topic_score_gemma":0.002215326,"domain_scores_codex":[0.9992206,0.0001811286,0.0001783554,0.0002218562,0.00004787203,0.0001502264],"domain_scores_gemma":[0.9995111,0.0003125093,0.00004499382,0.0000444224,0.00002562882,0.00006140645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002568958,0.00004480125,0.02831544,0.000001894779,0.000002624877,0.000001064535,0.0001601173,0.000009205357,0.9599001,0.000306949,0.000009339382,0.01099161],"study_design_scores_gemma":[0.0001936021,0.0002782938,0.9939362,0.00002090472,0.000003112805,0.000004367018,0.00009690494,0.00001019992,0.004204208,0.0008231913,0.0003442951,0.000084716],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997722,0.0003015757,0.00008344345,0.001646279,0.00006019122,0.0001286147,0.00002679231,0.00001465605,0.00001645184],"genre_scores_gemma":[0.9992139,0.00005559391,0.0005220042,0.00007290166,0.00007203524,0.00001263549,0.000007038086,7.507769e-7,0.00004316604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9656208,"threshold_uncertainty_score":0.1299275,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016499392","doi":"10.1007/s00792-011-0423-y","title":"Bacterial gene expression at low temperatures","year":2012,"lang":"en","type":"review","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Jeremy Coller Foundation; Tawani Foundation","keywords":"Bacteria; Gene expression; Psychrophile; Biology; Gene; Microbial ecology; Cytoplasm; Microbiology; Bacterial cell structure; Cell biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01930802383276569,"gpt":0.2558701711695738,"spread":0.2365621473368081,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001215003,0.0004075392,0.0005992178,0.00006796457,0.00009066991,0.00002895181,0.0002167891,0.0004734618,0.0001211148],"category_scores_gemma":[0.00003318682,0.0003086297,0.0003183206,0.00007553457,0.00003977188,0.000003152906,0.0001964299,0.0001556689,0.000093337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002715695,"about_ca_system_score_gemma":0.00004684006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001825012,"about_ca_topic_score_gemma":9.760196e-7,"domain_scores_codex":[0.9987168,0.0000869236,0.0003012581,0.0005004682,0.00009720957,0.0002973809],"domain_scores_gemma":[0.9991595,0.000003192209,0.0001507247,0.000555326,0.00003013549,0.0001010991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001219203,0.00003097887,5.765246e-7,0.001589022,0.00004748048,0.000001741241,0.000006730381,7.154381e-7,0.8763516,0.000001701863,0.005886156,0.1160711],"study_design_scores_gemma":[0.00007474636,0.00001860748,0.000001944588,0.0007790701,0.0001319948,0.0001382111,6.355952e-7,4.036414e-8,0.1149375,4.917662e-7,0.8835928,0.0003239904],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002816555,0.9944636,0.00001658227,0.000004982679,0.002237519,0.0002582851,0.0001146344,0.00003300119,0.00005489094],"genre_scores_gemma":[0.0005031573,0.9833239,0.0006114407,0.000009459971,0.01032435,0.00003308534,0.002233674,0.00007676751,0.002884124],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8777066,"threshold_uncertainty_score":0.9999366,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011943883","doi":"10.1007/s00792-008-0217-z","title":"Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; University of Georgia; National Science Foundation","keywords":"Hyperthermophile; Alcohol dehydrogenase; Thermococcus; Enzyme; Recombinant DNA; Pyrococcus furiosus; Biochemistry; Acetaldehyde; Thermostability; Escherichia coli; Protein subunit; Biology; Chemistry; Ethanol; Gene; Archaea","retraction":null,"screen_n_in":null,"score":{"opus":0.0165566931437982,"gpt":0.2183542369795002,"spread":0.201797543835702,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001358633,0.0001814137,0.000168729,0.0000218753,0.0001955714,0.00001140849,0.0003629622,0.0001120335,0.00003310902],"category_scores_gemma":[0.0001057297,0.0001114273,0.0001791926,0.0001487939,0.0002199651,0.00000800128,0.0001344709,0.00008945985,0.000004149433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001335485,"about_ca_system_score_gemma":0.00007215535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005658499,"about_ca_topic_score_gemma":0.00002382846,"domain_scores_codex":[0.9988158,0.0001712028,0.0002967712,0.0003245526,0.000178068,0.0002136455],"domain_scores_gemma":[0.9989508,0.00002506377,0.000208579,0.0006924868,0.00007641472,0.00004663485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003460029,0.0000511022,0.005633113,0.00000392857,0.00004736899,0.000003050436,0.0004127598,0.00006486535,0.9912996,0.00006437577,0.00003403252,0.002351189],"study_design_scores_gemma":[0.0004581882,0.00008103055,0.09641173,0.00003155049,0.00003741906,0.00001679844,0.0001061231,0.000252116,0.9000058,0.0001305185,0.002290987,0.000177744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976118,0.001016775,0.0003400314,0.0003565179,0.0001354506,0.0003039706,0.00009593117,0.00001056109,0.000128938],"genre_scores_gemma":[0.998146,0.0004249768,0.00003273852,0.0003660767,0.0001590511,0.00002747958,0.0007189701,0.00003295429,0.0000917568],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09129382,"threshold_uncertainty_score":0.4543875,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2791783240","doi":"10.1007/s00792-018-1015-x","title":"Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Fondo de Fomento al Desarrollo Científico y Tecnológico","keywords":"Biology; Phyllosphere; Bacteria; Genome; Microbiology; Botany; Gene; Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01557902334372012,"gpt":0.238302624276698,"spread":0.2227236009329779,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000177314,0.0001052152,0.00013176,0.000008934321,0.0001895033,0.00002603961,0.0004621644,0.00006319025,0.03246157],"category_scores_gemma":[0.00005637062,0.00006996204,0.00004724937,0.0001473661,0.0009810341,0.0001515291,0.0002448714,0.0001118456,0.001819721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000519282,"about_ca_system_score_gemma":0.00002074137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002591172,"about_ca_topic_score_gemma":0.00159285,"domain_scores_codex":[0.9989703,0.0001098032,0.0001610038,0.000238314,0.0001897356,0.0003308496],"domain_scores_gemma":[0.9993949,0.000116428,0.00006518415,0.0003159293,0.00001167195,0.00009589829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007898505,0.00005660982,0.06951427,0.000002861044,0.00003059986,0.00001173822,0.001239554,0.000006133224,0.9243692,0.00003411028,0.002123444,0.00253251],"study_design_scores_gemma":[0.0002869508,0.0003702728,0.9460473,0.00001699151,0.00001385105,0.00001441049,0.0003418185,0.0005512016,0.0135774,0.004211167,0.03436532,0.0002033144],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947845,0.0002164068,0.0000940225,0.0008606437,0.00009658955,0.0001204171,0.000043679,0.00002215667,0.003761602],"genre_scores_gemma":[0.9980983,0.00006722879,0.001187385,0.0002112738,0.0001869541,0.000004486593,0.00001302976,0.00001021609,0.000221167],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9107918,"threshold_uncertainty_score":0.9989575,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2753817968","doi":"10.1007/s00792-017-0960-0","title":"Wallemia peruviensis sp. nov., a new xerophilic fungus from an agricultural setting in South America","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Botany; Halotolerance; Ecology; Salinity","retraction":null,"screen_n_in":null,"score":{"opus":0.01987846442044756,"gpt":0.2353840490986323,"spread":0.2155055846781847,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007728734,0.0002399822,0.0002718707,0.0000209267,0.0005963267,0.000342625,0.0005859287,0.0001237291,0.004471133],"category_scores_gemma":[0.0002434851,0.00009575219,0.000131493,0.000126473,0.00002076874,0.0004288937,0.0001242837,0.0002608791,0.000798126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003214652,"about_ca_system_score_gemma":0.0000133889,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01497889,"about_ca_topic_score_gemma":0.00319152,"domain_scores_codex":[0.9985685,0.00007322954,0.000274416,0.0004896455,0.0002003073,0.0003938467],"domain_scores_gemma":[0.9988965,0.0004056127,0.0002157238,0.0002043589,0.00004265338,0.0002351567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001303338,0.0001725082,0.3459269,0.000005943094,0.00003984048,0.0001106664,0.003389672,0.00004556526,0.4091176,0.0001297699,0.01535877,0.2255724],"study_design_scores_gemma":[0.0001290429,0.0001145346,0.9614609,0.0001237573,0.00002309909,0.00002712426,0.001690919,0.0003472196,0.0005584313,0.0007690376,0.03429128,0.0004646904],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907693,0.0004215668,0.000001600856,0.003390082,0.0003853081,0.0001594655,0.0008975388,0.00008358703,0.003891549],"genre_scores_gemma":[0.9956505,0.0001766644,0.0003453485,0.0002959361,0.001571403,0.000006641872,0.001217046,0.000002188373,0.0007342439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.615534,"threshold_uncertainty_score":0.9999799,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119844501","doi":"10.1007/s00792-014-0716-z","title":"Potassium stress growth characteristics and energetics in the haloarchaeon Haloarcula marismortui","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Northern British Columbia","funders":"University of Northern British Columbia","keywords":"Halophile; Potassium; Intracellular; Sodium; Intracellular pH; Chemistry; Rubidium; Ion transporter; Ion; Biophysics; Biochemistry; Biology; Bacteria; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.007736774999771349,"gpt":0.1994065139765655,"spread":0.1916697389767941,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003656361,0.0001225816,0.0001480188,0.00002785876,0.0001792086,0.00002138927,0.0003560094,0.0001005958,0.0005105485],"category_scores_gemma":[0.0001010107,0.00009171091,0.00002518776,0.00009167988,0.0005036026,0.00007254924,0.0002869077,0.0002745941,0.00005862078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001952301,"about_ca_system_score_gemma":0.000004639708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005699848,"about_ca_topic_score_gemma":0.002214772,"domain_scores_codex":[0.9988954,0.0004525577,0.0001566106,0.0001832034,0.00008275393,0.0002294755],"domain_scores_gemma":[0.9992826,0.0003293112,0.0000570782,0.0002844409,0.000004721857,0.00004187796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009456022,0.0005643163,0.8735133,0.00008203213,0.00002208716,0.0000601877,0.00775853,0.0001159052,0.06069262,0.01483251,0.009024164,0.03323978],"study_design_scores_gemma":[0.0001925695,0.00007974412,0.9771616,0.00001379792,0.000009290289,0.00001985546,0.0001621994,0.0004753954,0.0003337994,0.01178035,0.009606115,0.0001652236],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942385,0.00003662987,0.00005160321,0.001741723,0.0001017648,0.00009103729,0.0000115139,0.00001322608,0.003714003],"genre_scores_gemma":[0.998413,0.0001667686,0.0001978257,0.001007859,0.00007100425,0.00000658427,0.00005393815,0.000008104042,0.00007488091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1036484,"threshold_uncertainty_score":0.5590148,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972239202","doi":"10.1007/s00792-014-0715-0","title":"Detection and analysis of elusive members of a novel and diverse archaeal community within a thermal spring streamer consortium","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Joint Genome Institute; New Mexico Space Grant Consortium; Alabama Space Grant Consortium; National Institutes of Health; National Science Foundation","keywords":"Metagenomics; Archaea; Biology; Pyrosequencing; Primer (cosmetics); 16S ribosomal RNA; Phylotype; Hot spring; Microbial ecology; Ribosomal RNA; Genetics; Gene; Evolutionary biology; Bacteria; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.01873404440374228,"gpt":0.2316708185924192,"spread":0.2129367741886769,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003153324,0.00007417971,0.0002149695,0.00006625207,0.0001585681,0.000002298511,0.0001047351,0.00005707306,0.0002429524],"category_scores_gemma":[0.00005108274,0.00006859146,0.00003767282,0.0001479661,0.0008278449,0.00005319553,0.0003192524,0.0001721202,8.60991e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001123546,"about_ca_system_score_gemma":0.000002599665,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.008949785,"about_ca_topic_score_gemma":0.02056549,"domain_scores_codex":[0.9993395,0.0002871557,0.0001465455,0.00009338776,0.00004630883,0.00008716467],"domain_scores_gemma":[0.9993582,0.0002638246,0.0001419565,0.0001933112,0.000008340604,0.00003436384],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000995645,0.0001367875,0.1864937,0.00001792229,0.0002066871,2.762654e-7,0.006087882,0.00379751,0.8000077,0.0001345373,0.000003148413,0.003014338],"study_design_scores_gemma":[0.0003613998,0.0001423775,0.9777606,0.000008836169,0.0002195579,0.000002148842,0.0009389283,0.01252799,0.007735373,0.0001866228,0.00002800769,0.00008812791],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990631,0.00001121481,0.000189241,0.00001657748,0.0000187682,0.000056203,0.00001577897,0.000005609423,0.0006235408],"genre_scores_gemma":[0.999543,0.00001009264,0.0003888169,0.00003634275,0.000004724302,0.000001053498,0.000004805988,0.000003111527,0.000008090027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7922723,"threshold_uncertainty_score":0.9976497,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059821055","doi":"10.1007/s00792-005-0443-6","title":"Gene cloning, expression and partial characterization of cell division protein FtsZ1 from extremely halophilic archaeon Haloarcula japonica strain TR-1","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institutes of Natural Sciences; Dalhousie University; Noda Institute for Scientific Research","keywords":"Halophile; Strain (injury); Cloning (programming); Biology; Gene; Archaea; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01103052384686098,"gpt":0.2088726134812806,"spread":0.1978420896344197,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001280869,0.0001967568,0.0001987531,0.00005067151,0.0001238118,0.00002609066,0.0002001021,0.0001986519,0.0000690637],"category_scores_gemma":[0.00002821358,0.0001956637,0.00008076588,0.00005382962,0.0001408196,0.00002029643,0.0002330037,0.0001006453,0.000007531938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001066489,"about_ca_system_score_gemma":0.00003849916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003413048,"about_ca_topic_score_gemma":0.00001187561,"domain_scores_codex":[0.9987608,0.0001144713,0.0002624877,0.0004533932,0.0001850086,0.0002238472],"domain_scores_gemma":[0.9993239,0.00001111785,0.0001812433,0.0003273407,0.00004844117,0.0001079577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001650703,0.000116888,0.001452251,0.00002237971,0.00001513123,0.000004084644,0.0002764324,0.0000136554,0.9881457,0.00002350952,0.00001773615,0.009747157],"study_design_scores_gemma":[0.0007123016,0.0001596878,0.04883974,0.00005726478,0.00001452927,0.000002663498,0.00002170574,0.0002169804,0.9472508,0.0001065692,0.002409814,0.0002079378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956406,0.0008600663,0.002473699,0.0001797365,0.00005428277,0.0003268254,0.0003501697,0.00001564528,0.00009897252],"genre_scores_gemma":[0.9959624,0.0002208689,0.002168958,0.00005426758,0.0003460339,0.00001194788,0.001035815,0.00002030205,0.0001793455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0473875,"threshold_uncertainty_score":0.7978933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3121921999","doi":"10.1007/s00792-021-01216-1","title":"Selection and re-acclimation of bioprospected acid-tolerant green microalgae suitable for growth at low pH","year":2021,"lang":"en","type":"article","venue":"Extremophiles","topic":"Algal biology and biofuel production","field":"Energy","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Laurentian University","funders":"Mitacs","keywords":"Acclimatization; Environmental chemistry; Axenic; Photosynthesis; Botany; Chemistry; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01490706212933077,"gpt":0.2240379994491824,"spread":0.2091309373198516,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001412633,0.0001281714,0.0001968013,0.00006095353,0.0001865159,0.00001364944,0.00005026261,0.0001777559,0.0001710556],"category_scores_gemma":[0.0000977823,0.0001165316,0.0000600106,0.0002264624,0.0000666331,0.0001308224,0.00004483443,0.00007076551,0.00001187163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005218807,"about_ca_system_score_gemma":0.00002304164,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002701978,"about_ca_topic_score_gemma":0.0007085218,"domain_scores_codex":[0.999112,0.00005320379,0.0002338357,0.0003368977,0.0000724435,0.0001915862],"domain_scores_gemma":[0.9994286,0.00003897957,0.0001235649,0.0001300524,0.0002464192,0.00003232674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001968395,0.00005831233,0.006877701,0.0001556298,0.00004708478,0.000001577471,0.0001826556,0.000008085651,0.987793,0.001872799,0.0003458849,0.002460399],"study_design_scores_gemma":[0.000583543,0.0001004282,0.0249271,0.00003125764,0.00004043261,0.00005229215,0.00008073913,0.0005432336,0.9654819,0.006641303,0.001353889,0.0001638976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967798,0.001151377,0.0002443198,0.0008262533,0.0002291794,0.0001753341,0.00003215323,0.00007217184,0.0004894328],"genre_scores_gemma":[0.9959694,0.0001622275,0.001627966,0.00005521558,0.0002965607,0.00001696981,0.0002997431,0.00001541672,0.001556519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02231114,"threshold_uncertainty_score":0.4752019,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2978072747","doi":"10.1007/s00792-019-01135-2","title":"Proto-dolomite formation in microbial consortia dominated by Halomonas strains","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"University of Toronto Scarborough; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Kuwait University; University of Toronto; Kuwait Foundation for the Advancement of Sciences","keywords":"Dolomite; Halomonas; Microbial population biology; Extracellular polymeric substance; Sabkha; Microbial ecology; Metagenomics; Microbial mat; Biology; Ecology; Halophile; Microcosm; Environmental chemistry; Mineralogy; Chemistry; Bacteria; Sedimentary rock; Biofilm","retraction":null,"screen_n_in":null,"score":{"opus":0.007747099078546422,"gpt":0.2130626190013866,"spread":0.2053155199228402,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001836532,0.0001267089,0.0001726423,0.00003934017,0.00008395853,0.00001206195,0.000254037,0.0001411069,0.009072886],"category_scores_gemma":[0.00001793948,0.0001244848,0.00003837848,0.0001347343,0.0001746436,0.0002344039,0.0001482075,0.0002431649,0.002043807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008966494,"about_ca_system_score_gemma":0.000007076663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002879744,"about_ca_topic_score_gemma":0.001270709,"domain_scores_codex":[0.9990492,0.0002112629,0.0002245384,0.0001974196,0.00005441042,0.0002631587],"domain_scores_gemma":[0.9995815,0.0000573125,0.00008609622,0.0002322974,0.000004741531,0.0000380752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006319694,0.0001131626,0.00891448,0.00001046618,0.000004246303,0.00000392833,0.0005712523,0.0001058864,0.9700694,0.00007627682,0.01896746,0.001100216],"study_design_scores_gemma":[0.008347928,0.0008958374,0.5875285,0.0001722392,0.00003266329,0.0002005352,0.000882003,0.003324967,0.184573,0.01208241,0.2000798,0.001880158],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9856393,0.00002520306,0.00001545355,0.0002676479,0.00009925199,0.0006767511,0.00002946895,0.00002797993,0.01321895],"genre_scores_gemma":[0.9981952,0.00001137283,0.0001402929,0.0003524288,0.00001323748,0.00002067755,0.0001721097,0.000009097559,0.001085628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7854965,"threshold_uncertainty_score":0.9987332,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2047398033","doi":"10.1007/s00792-015-0743-4","title":"Characterizing the surface-exposed proteome of Planococcus halocryophilus during cryophilic growth","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Winnipeg; Health Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Space Agency","keywords":"Proteome; Peptidoglycan; Biochemistry; In silico; Biology; Metabolism; Amino acid; Cell wall; Chemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02689154212993657,"gpt":0.2184113293653411,"spread":0.1915197872354045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003740043,0.0001755127,0.0002470699,0.00002825565,0.0002668183,0.00001311372,0.000617367,0.0001132398,0.001067803],"category_scores_gemma":[0.00008827576,0.0001300354,0.00007044958,0.0002022664,0.0004797583,0.000157105,0.0004591796,0.0002885028,0.000343729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007140425,"about_ca_system_score_gemma":0.00002159863,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003130817,"about_ca_topic_score_gemma":0.0001511311,"domain_scores_codex":[0.9987274,0.0003014435,0.0002748737,0.0002297776,0.000149476,0.0003170561],"domain_scores_gemma":[0.999136,0.0001109736,0.0001708686,0.0004651721,0.0000198296,0.00009718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001422736,0.0001023817,0.01447175,0.00001909354,0.00002080678,0.00001015156,0.002137503,0.0002448449,0.9813516,0.0001162356,0.00129726,0.00008606094],"study_design_scores_gemma":[0.001895424,0.0004721263,0.7341612,0.00007411165,0.00004314293,0.0001329285,0.0006462726,0.0001929006,0.2409362,0.01267154,0.008054772,0.000719349],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936898,0.00007407107,0.000004196907,0.001176738,0.0001911314,0.0003446079,0.00001697396,0.00004380763,0.004458702],"genre_scores_gemma":[0.9992239,0.0000238089,0.0001585939,0.0001831176,0.0000968583,0.00001069121,0.00002145948,0.00001638706,0.0002651391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7404155,"threshold_uncertainty_score":0.9998454,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2952811401","doi":"10.1007/s00792-017-0956-9","title":"Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver Island University; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Norges Forskningsråd; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Dartmouth College; Simons Foundation","keywords":"Biosphere; Microbial ecology; Bacteria; Biology; Ecology; Thermophile; Evolutionary biology; Computational biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01641495551702992,"gpt":0.2326034096841052,"spread":0.2161884541670753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008329412,0.0002589597,0.0002833306,0.00004033998,0.0003275569,0.000083618,0.0005345519,0.00018214,0.00005868922],"category_scores_gemma":[0.00005300746,0.0002397263,0.0001445974,0.00002366672,0.0001538673,0.000002931973,0.0002511558,0.00009208859,0.00001105447],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002410449,"about_ca_system_score_gemma":0.00009685566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000698314,"about_ca_topic_score_gemma":0.00287125,"domain_scores_codex":[0.9987773,0.00006660992,0.0002439644,0.0005116746,0.0001649028,0.0002355885],"domain_scores_gemma":[0.9988466,0.00002084447,0.0001487018,0.0007542322,0.00009762446,0.0001320176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003560204,0.00004991264,0.01189371,0.00001246642,0.0001549382,0.00000764881,0.0007507749,0.00003562972,0.9855103,0.0000672131,0.0003020375,0.000859302],"study_design_scores_gemma":[0.0007412086,0.0002367175,0.5216249,0.00003210178,0.00004505541,0.000005728952,0.0003068102,0.000008435766,0.4538926,0.0010237,0.02172092,0.0003618929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932871,0.004460957,0.00005114027,0.0008484776,0.0004675165,0.0002391813,0.0002615076,0.000005025754,0.0003791163],"genre_scores_gemma":[0.9963301,0.0005422468,0.001487977,0.0002402618,0.0005006271,0.00002515833,0.00009935712,0.00003558064,0.0007386416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5316178,"threshold_uncertainty_score":0.9775757,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2102999930","doi":"10.1007/s00792-004-0425-0","title":"The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii","year":2004,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Temperateness; Bacteriophage; Lysogenic cycle; Prophage; Genome; Integrase; Genetics; Gene; Lysin; Whole genome sequencing; Microbiology; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.007921156489856062,"gpt":0.2083570181676446,"spread":0.2004358616777886,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002020845,0.000245307,0.0002090644,0.00002982737,0.0006355192,0.0001011956,0.0006660136,0.00008810341,0.001413768],"category_scores_gemma":[0.00003934509,0.0001450472,0.0002043176,0.0002689805,0.0006837101,0.0003251458,0.0003442486,0.0002824924,0.0005190157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002333147,"about_ca_system_score_gemma":0.00002951188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003840298,"about_ca_topic_score_gemma":0.0005345783,"domain_scores_codex":[0.9985654,0.00008944162,0.000371598,0.0003415078,0.0002164451,0.0004156],"domain_scores_gemma":[0.9988919,0.0001171234,0.000228828,0.0006424144,0.00002199322,0.00009767221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005278131,0.00008374667,0.00004330096,0.000004353014,0.00004314623,0.00001027491,0.001224614,0.0001464023,0.9774593,0.00009048773,0.0002362629,0.0206054],"study_design_scores_gemma":[0.0009690074,0.0001778626,0.5048193,0.00006155382,0.00006674662,0.0001288453,0.001172299,0.00003572593,0.05000413,0.001015703,0.4410062,0.0005425798],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849652,0.0001996746,0.0000654309,0.003235859,0.0004192614,0.0003737012,0.00008922565,0.00004168901,0.01060997],"genre_scores_gemma":[0.9973802,0.0003978434,0.0001774432,0.0005124608,0.0001679214,0.00002981833,0.00002247277,0.00002952949,0.0012823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9274551,"threshold_uncertainty_score":0.9994991,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084485932","doi":"10.1007/s00792-006-0005-6","title":"Prokaryotes that grow optimally in acid have purine-poor codons in long open reading frames","year":2006,"lang":"en","type":"article","venue":"Extremophiles","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Open reading frame; Purine; Biology; Amino acid; Purine metabolism; Biochemistry; Nucleic acid; Glycine; Pyrimidine; Genetics; Gene; Peptide sequence","retraction":null,"screen_n_in":null,"score":{"opus":0.0180976850078667,"gpt":0.2551896123445713,"spread":0.2370919273367046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003595143,0.0002309801,0.0002613699,0.0001165896,0.00006533933,0.0001173735,0.0005266117,0.0002226591,0.00006425614],"category_scores_gemma":[0.00008307683,0.0002211976,0.00007069014,0.0001021468,0.00005904345,0.00002198399,0.0003000104,0.0001231383,0.00001456072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498821,"about_ca_system_score_gemma":0.00005516868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005192169,"about_ca_topic_score_gemma":0.001305881,"domain_scores_codex":[0.9985831,0.0001159647,0.0002832305,0.0005044031,0.0001384951,0.0003747732],"domain_scores_gemma":[0.9994382,0.00002841657,0.000100364,0.0003538172,0.0000254401,0.00005380092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001447442,0.0001614102,0.06728668,0.00003214514,0.00001689911,0.0001168086,0.00005936383,0.0001175041,0.923932,0.0008020971,0.0007594925,0.006570887],"study_design_scores_gemma":[0.0006750918,0.0001136465,0.04148962,0.0001544344,0.00000707786,0.00002917558,0.0001082265,0.00008381957,0.9502463,0.00389258,0.00282453,0.0003755335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851452,0.002396035,0.00153156,0.0008630492,0.000105739,0.0008062301,0.00001979291,0.00002127183,0.009111165],"genre_scores_gemma":[0.9905006,0.0001549127,0.007071557,0.0001380109,0.0002032827,0.0001198011,0.00009352028,0.00003971766,0.001678594],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02631429,"threshold_uncertainty_score":0.9020174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W771558484","doi":"10.1007/s00792-015-0761-2","title":"Isolation, characterization, and survival strategies of Thermotoga sp. strain PD524, a hyperthermophile from a hot spring in Northern Thailand","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Air Force Office of Scientific Research; Silpakorn University; National Aeronautics and Space Administration; National Science Foundation","keywords":"Hyperthermophile; Cellobiose; Strain (injury); Xylose; Thermotoga maritima; Maltose; Arabinose; Biology; 16S ribosomal RNA; Food science; Biochemistry; Sucrose; Fermentation; Gene; Enzyme; Escherichia coli; Cellulase","retraction":null,"screen_n_in":null,"score":{"opus":0.02088518412058565,"gpt":0.2234623428054434,"spread":0.2025771586848577,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001227742,0.0001391021,0.0001813085,0.00003722002,0.00003075161,0.00002165768,0.00009957624,0.00007760841,0.000005377],"category_scores_gemma":[0.0000306959,0.0001285434,0.00003091283,0.00005539678,0.00007376567,0.000003279824,0.00007488163,0.00004111631,0.000001315277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006831544,"about_ca_system_score_gemma":0.00008031715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003099492,"about_ca_topic_score_gemma":0.002114627,"domain_scores_codex":[0.9992725,0.00004817046,0.0002100492,0.0002475938,0.00008700809,0.0001346971],"domain_scores_gemma":[0.9995739,0.0000157432,0.00009172396,0.0001866475,0.00008096245,0.00005101742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005474443,0.00002593888,0.2931066,0.000005640865,0.0000312907,0.000001469045,0.0005234331,0.00006821796,0.704599,0.00005997243,0.000003447686,0.001520282],"study_design_scores_gemma":[0.0007365932,0.0001075662,0.9898114,0.00002076454,0.00001143697,0.000002201306,0.001208977,0.0001523721,0.005829855,0.000825107,0.001118447,0.000175249],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968082,0.001892734,0.0004250311,0.00008594945,0.00008758841,0.000122709,0.0001232462,0.000003505045,0.0004510835],"genre_scores_gemma":[0.9989857,0.0003431358,0.0003153697,0.0000180534,0.0001890727,0.000007438266,0.00008743787,0.00001844226,0.00003532628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6987691,"threshold_uncertainty_score":0.5241848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084575344","doi":"10.1007/s00792-013-0599-4","title":"Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Yunnan University; Wuhan University; Chinese Academy of Sciences; Helsingin Yliopisto","keywords":"Haloarchaea; Plasmid; Biology; Mobile genetic elements; Genome; Virus; Gene; Genetics; Virology","retraction":null,"screen_n_in":null,"score":{"opus":0.008977175618924967,"gpt":0.228997997288937,"spread":0.2200208216700121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00005972334,0.0001684718,0.0001898223,0.0001030066,0.00004267468,0.0000316305,0.000210296,0.00007005491,0.008017872],"category_scores_gemma":[0.00001167063,0.0001684877,0.00006416615,0.0003388436,0.00007201538,0.0002115632,0.0001724371,0.0001086913,0.001249396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001011012,"about_ca_system_score_gemma":0.00001655189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004287553,"about_ca_topic_score_gemma":0.0005147534,"domain_scores_codex":[0.9987713,0.0000565927,0.000422458,0.0003244659,0.000157684,0.000267515],"domain_scores_gemma":[0.9994316,0.0000164392,0.0001277693,0.0002752242,0.0000125292,0.0001364766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001199112,0.0001141716,0.002024642,0.000005080241,0.000009666559,0.000008274247,0.000687948,0.0004881913,0.9850272,0.00001350197,0.0004236352,0.01118569],"study_design_scores_gemma":[0.0005768009,0.0002598081,0.6507782,0.00009391618,0.0000212311,0.00002266148,0.00009546016,0.0006079354,0.3181881,0.0003985426,0.02855035,0.0004069944],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980044,0.00004781151,0.0002950425,0.0003142622,0.0001501776,0.0007453379,0.00002788422,0.00002959851,0.0003854905],"genre_scores_gemma":[0.9975241,0.00006357812,0.001091502,0.0005267666,0.00002246038,0.00008844904,0.00003133999,0.00002585435,0.0006259109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6668391,"threshold_uncertainty_score":0.9995282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1840740921","doi":"10.1007/s00792-015-0776-8","title":"Tellurite-, tellurate-, and selenite-based anaerobic respiration by strain CM-3 isolated from gold mine tailings","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":11,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; University of Manitoba","keywords":"Tellurate; Anaerobic exercise; Selenium; Anaerobic respiration; Chemistry; Tailings; Strain (injury); Food science; Microbiology; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01836959502152442,"gpt":0.2019104359164554,"spread":0.183540840894931,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002329009,0.0002079418,0.0002081471,0.00006831846,0.0001060633,0.0001148918,0.0001528651,0.0001118423,0.001510273],"category_scores_gemma":[0.00004975036,0.0001821084,0.00005082936,0.000308887,0.00009838077,0.0002233586,0.00001131117,0.0001301029,0.0001334983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007176639,"about_ca_system_score_gemma":0.00003877847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00527994,"about_ca_topic_score_gemma":0.001833217,"domain_scores_codex":[0.9987169,0.00007334256,0.0002851533,0.0003988056,0.0002527627,0.0002730272],"domain_scores_gemma":[0.9992986,0.00008700995,0.0001058938,0.0001874427,0.00005583119,0.0002652605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008053434,0.0002695249,0.4724063,0.00008626839,0.0002555477,0.0001332491,0.001314592,0.01289097,0.3505707,0.000009936157,0.04691707,0.1143406],"study_design_scores_gemma":[0.006669253,0.001700887,0.08814452,0.0002144089,0.0005418638,0.0000389865,0.004200252,0.695098,0.07293978,0.004869571,0.1225811,0.003001444],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953703,0.00193828,0.0001334219,0.0008509319,0.00006060916,0.00009644541,0.0006082415,0.00006286732,0.0008788921],"genre_scores_gemma":[0.9936288,0.00002998653,0.0009416859,0.0002993493,0.000137449,9.44227e-7,0.00396696,0.000005172452,0.0009896789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.682207,"threshold_uncertainty_score":0.9994025,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084979881","doi":"10.1007/s00792-014-0693-2","title":"Extremely ‘vanadiphilic’ multiply metal-resistant and halophilic aerobic anoxygenic phototrophs, strains EG13 and EG8, from hypersaline springs in Canada","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba","funders":"","keywords":"Anoxygenic photosynthesis; Phototroph; Halophile; Bacteriochlorophyll; Biology; Botany; Extremophile; Salinity; Pigment; Gastropoda; Psychrophile; Extreme environment; Bacteria; Ecology; Photosynthesis; Chemistry; Microorganism","retraction":null,"screen_n_in":null,"score":{"opus":0.006526113336163755,"gpt":0.1653272893666301,"spread":0.1588011760304663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002247633,0.0002769803,0.0004005092,0.00006166731,0.0002255728,0.00002047929,0.0003149531,0.0001195953,0.001540451],"category_scores_gemma":[0.0000833058,0.00027206,0.00003954791,0.0001514123,0.0003782094,0.0001327326,0.0003308464,0.0003252162,0.00002881185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002475766,"about_ca_system_score_gemma":0.00007315783,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8547182,"about_ca_topic_score_gemma":0.9883176,"domain_scores_codex":[0.9983169,0.0002848743,0.0003229355,0.0005098596,0.0001265596,0.0004388017],"domain_scores_gemma":[0.9990368,0.0002486126,0.0001015911,0.0004141213,0.000007236053,0.0001916736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009408091,0.00007789749,0.03711417,0.00001365029,0.00004172695,0.00003150701,0.0006026613,0.0002226238,0.9549342,0.0001411744,0.0005547959,0.006171469],"study_design_scores_gemma":[0.001038147,0.0001025121,0.9793833,0.00002881412,0.00003412498,0.00001605609,0.000219568,0.001523876,0.001486012,0.002247657,0.01346268,0.0004572584],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978562,0.0005699754,0.000007336809,0.0005499939,0.0001020509,0.0002066631,0.00005453228,0.00002145292,0.0006317814],"genre_scores_gemma":[0.9981928,0.0001795864,0.0006603253,0.0007391394,0.00004975417,0.000008963299,0.00005034033,0.00002262613,0.00009640999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9534482,"threshold_uncertainty_score":0.9999732,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2891356545","doi":"10.1007/s00792-018-1053-4","title":"A metabolic and genomic assessment of sugar fermentation profiles of the thermophilic Thermotogales, Fervidobacterium pennivorans","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Cellobiose; Biology; Fermentation; Thermophile; Genome; Metabolic pathway; Biochemistry; Synteny; Strain (injury); Metabolic engineering; Genetics; Whole genome sequencing; Gene; Microbiology; Enzyme; Cellulase","retraction":null,"screen_n_in":null,"score":{"opus":0.01341286628824456,"gpt":0.2542888218315434,"spread":0.2408759555432989,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001185755,0.0001302847,0.0001777441,0.00002711284,0.00008297242,0.000007918485,0.0001875569,0.00005688112,0.00001823035],"category_scores_gemma":[0.00001136809,0.00009113902,0.00007763146,0.00006242836,0.0003179385,0.000001100317,0.0001726412,0.00003341697,5.875438e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004895522,"about_ca_system_score_gemma":0.0000588396,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003449317,"about_ca_topic_score_gemma":0.0000294637,"domain_scores_codex":[0.9992805,0.00007093538,0.0002151753,0.0002132695,0.00009326056,0.0001269294],"domain_scores_gemma":[0.999386,0.000008670111,0.0001620616,0.0003177189,0.0001003467,0.00002517281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002203305,0.00003343592,0.05373392,0.00002264286,0.00007622986,7.861365e-8,0.0002554328,0.000002771419,0.9444225,0.0003133904,0.00002705643,0.001090445],"study_design_scores_gemma":[0.0002483475,0.0001261122,0.7400782,0.00001082736,0.00003809249,0.000003458531,0.0001409419,0.00002622701,0.2581938,0.0002675402,0.000786265,0.00008020498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966424,0.0018656,0.00003855708,0.0001273496,0.000117526,0.0002789287,0.00005906347,0.000001755819,0.0008688681],"genre_scores_gemma":[0.9983282,0.0006799664,0.0006247227,0.00005277922,0.0001775914,0.00001426778,0.000009990083,0.00001632817,0.00009616266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6863443,"threshold_uncertainty_score":0.3716541,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1987883355","doi":"10.1007/s00792-013-0539-3","title":"Characterization of culturable Paenibacillus spp. from the snow surface on the high Antarctic Plateau (DOME C) and their dissemination in the Concordia research station","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"European Space Agency; Polar Knowledge Canada","keywords":"Paenibacillus; Biology; Paenibacillus polymyxa; 16S ribosomal RNA; Microbiology; Microbial ecology; Prophage; Phylogenetic tree; Isolation (microbiology); Bacteria; Botany; Gene; Bacteriophage; Genetics; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.02841568975260507,"gpt":0.2683980377763069,"spread":0.2399823480237019,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001123078,0.00008759853,0.00009344739,0.0000208692,0.0002822917,0.00008369485,0.0003160121,0.00004792649,0.001254227],"category_scores_gemma":[0.0003488749,0.0000375702,0.00001794333,0.0002676106,0.0003931515,0.0002650503,0.0001001046,0.0002469562,0.0001810751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007604071,"about_ca_system_score_gemma":0.000009618559,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008352987,"about_ca_topic_score_gemma":0.001695091,"domain_scores_codex":[0.9984402,0.0006424112,0.0001501476,0.0001870882,0.0003242945,0.0002558278],"domain_scores_gemma":[0.997591,0.002044019,0.00006390132,0.0002436417,0.00002380108,0.00003362199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007546595,0.0001285296,0.07909526,0.000006850077,0.00001554402,0.000002864029,0.01125504,0.000100733,0.8880869,0.0004185486,0.004984357,0.01582989],"study_design_scores_gemma":[0.0001330278,0.0000830096,0.9827369,0.0000199794,0.000001646677,0.00000146865,0.002891297,0.001588275,0.008136084,0.003429134,0.0009236772,0.00005543734],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874101,0.00002884784,0.0000113914,0.01123735,0.00003240203,0.0006030742,0.00005338828,0.000005386664,0.0006180495],"genre_scores_gemma":[0.9992304,0.0002851122,0.00001119897,0.0001176587,0.00003593888,0.00003682348,0.00008318249,0.000006372858,0.000193273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9036417,"threshold_uncertainty_score":0.9996588,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2409386287","doi":"10.1007/s00792-016-0840-z","title":"Characterization of two key enzymes for aromatic amino acid biosynthesis in symbiotic archaea","year":2016,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Archaea; Enzyme; Biochemistry; Biosynthesis; Microbial ecology; Biology; Amino acid; Bacteria; Chemistry; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.00960850709863325,"gpt":0.2208337102344585,"spread":0.2112252031358252,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001261254,0.0001002977,0.0001368581,0.00007801405,0.00001555511,0.000004307484,0.00008548317,0.0000628952,0.000007077379],"category_scores_gemma":[0.0001399184,0.00007396619,0.00005339436,0.00006573095,0.00004393146,0.000004528733,0.00002146714,0.00001665092,0.00000290866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007409698,"about_ca_system_score_gemma":0.000013982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005601593,"about_ca_topic_score_gemma":0.000008081935,"domain_scores_codex":[0.999395,0.0000252705,0.0001912764,0.0002064427,0.00004583002,0.0001362219],"domain_scores_gemma":[0.9996697,0.000007926821,0.00007396023,0.0001988876,0.00002568153,0.00002388382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002629028,0.00003415415,0.0004131492,0.00004491174,0.00001333667,1.812704e-7,0.00003328344,0.000002137567,0.9881253,0.0001191086,0.00002299833,0.01116519],"study_design_scores_gemma":[0.0003319006,0.00005835943,0.005359591,0.00008594873,0.000009897654,0.000004623121,0.000006041661,0.00001409105,0.9922797,0.00012466,0.001621419,0.0001037781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934998,0.0002807633,0.005516104,0.0002919023,0.0001725011,0.0001694568,0.00004262221,0.00001115969,0.00001568059],"genre_scores_gemma":[0.9979176,0.0001824396,0.001238571,0.00001486245,0.000311308,0.00001368722,0.00005045435,0.0000151676,0.0002559193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01106141,"threshold_uncertainty_score":0.3016254,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}