{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":69,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":69,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"3ad2dcba37fc","filters":{"venue":"FEMS Immunology & Medical Microbiology"}},"results":[{"id":"W2149188810","doi":"10.1016/s0928-8244(02)00465-0","title":"Oral use of<i>Lactobacillus rhamnosus</i>GR-1 and<i>L. fermentum</i>RC-14 significantly alters vaginal flora: randomized, placebo-controlled trial in 64 healthy women","year":2003,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":508,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute","funders":"Procter and Gamble","keywords":"Lactobacillus fermentum; Lactobacillus rhamnosus; Probiotic; Lactobacillus; Placebo; Bacterial vaginosis; Biology; Vaginal flora; Microbiology; Asymptomatic; Vagina; Internal medicine; Medicine; Bacteria; Food science; Fermentation; Lactic acid; Lactobacillus plantarum","authors":[{"name":"Gregor Reid","is_ca":true},{"name":"Duane Charbonneau","is_ca":false},{"name":"Julie Erb-Alvarez","is_ca":false},{"name":"Barbara A. Kochanowski","is_ca":false},{"name":"Dee Beuerman","is_ca":true},{"name":"Russ Poehner","is_ca":false},{"name":"Andrew W. Bruce","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01851693208225166,"gpt":0.2780471961724552,"spread":0.2595302640902036,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.007535011,0.0007365431,0.00362322,0.001050978,0.0003120038,0.00003113716,0.0006652193,0.001815089,0.002393659],"category_scores_gemma":[0.0117962,0.000596899,0.0004201985,0.0006447319,0.006159721,0.0002372758,0.0003172993,0.002714478,0.0003302542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004564735,"about_ca_system_score_gemma":0.001213708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006885066,"about_ca_topic_score_gemma":0.0001475051,"domain_scores_codex":[0.9834397,0.01063732,0.002267844,0.001446569,0.0001412617,0.002067264],"domain_scores_gemma":[0.9924632,0.005418398,0.0006741629,0.000938891,0.0003130194,0.0001923772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.746304,0.001518429,0.0006743469,0.00003864592,0.001837114,0.0000663465,0.0007886786,0.000005977315,0.2436138,0.001720192,0.0009440416,0.002488388],"study_design_scores_gemma":[0.9526213,0.003526608,0.0003546384,0.00006279473,0.0001284399,0.001456868,0.0004620235,0.000005182221,0.01012843,0.0005561698,0.03011792,0.0005796656],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824675,0.005186575,0.000215893,0.001438674,0.005003166,0.005105066,0.0000604189,0.0001102837,0.000412389],"genre_scores_gemma":[0.993305,0.002507164,0.0001646661,0.0007254956,0.00008557492,0.001625556,0.0001805073,0.00006273598,0.001343281],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2334854,"threshold_uncertainty_score":0.9996482,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130187365","doi":"10.1111/j.1574-695x.2001.tb01549.x","title":"Oral probiotics can resolve urogenital infections","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":451,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Bacterial vaginosis; Lactobacillus rhamnosus; Vagina; Lactobacillus fermentum; Probiotic; Lactobacillus; Vaginitis; Biology; Asymptomatic; Genitourinary system; Microbiology; Internal medicine; Medicine; Gynecology; Bacteria; Lactic acid","authors":[{"name":"Gregor Reid","is_ca":true},{"name":"Andrew W. Bruce","is_ca":true},{"name":"Nicola Fraser","is_ca":true},{"name":"Christine Heinemann","is_ca":true},{"name":"Janice Owen","is_ca":false},{"name":"Beth Henning","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0179326109787327,"gpt":0.2879305458359921,"spread":0.2699979348572594,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.001095879,0.0005238724,0.0008262757,0.0006521675,0.0007325513,0.00002786375,0.0009572371,0.001954334,0.00948889],"category_scores_gemma":[0.002474391,0.0004669949,0.0003023449,0.0008919362,0.003827663,0.0001313661,0.0006000974,0.002769865,0.006046515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002929443,"about_ca_system_score_gemma":0.0007211436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008287469,"about_ca_topic_score_gemma":0.0009772688,"domain_scores_codex":[0.99493,0.001321049,0.0008781519,0.001142577,0.00008046464,0.001647701],"domain_scores_gemma":[0.9975007,0.0006565969,0.0002176945,0.001089489,0.0003995433,0.0001359365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004143718,0.001614959,0.01489922,0.00001284211,0.001490891,0.0002047224,0.0003785393,0.000004987988,0.9483088,0.002175722,0.01180618,0.01868879],"study_design_scores_gemma":[0.004174942,0.002745894,0.01263354,0.00005042008,0.0001371067,0.03357134,0.0004119935,0.000003545385,0.08295809,0.0006471881,0.8618251,0.0008408073],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9764416,0.005213325,0.0007222152,0.006258011,0.005305639,0.0008770318,0.0001165219,0.0005806506,0.004484997],"genre_scores_gemma":[0.9891843,0.0008921569,0.0001492688,0.0007388108,0.0002416474,0.0001586714,0.0008384185,0.00007514039,0.007721538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8653507,"threshold_uncertainty_score":0.9997782,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156960740","doi":"10.1111/j.1574-695x.2002.tb00617.x","title":"Correlation between virulence of<i>Candida albicans</i>mutants in mice and<i>Galleria mellonella</i>larvae","year":2002,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":340,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"","keywords":"Galleria mellonella; Virulence; Biology; Candida albicans; Microbiology; Corpus albicans; Pathogen; Yeast; Mutant; Virulence factor; Hypha; Genetics; Gene","authors":[{"name":"Marc Brennan","is_ca":false},{"name":"David Y. Thomas","is_ca":true},{"name":"Malcolm Whiteway","is_ca":true},{"name":"Kevin Kavanagh","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009116507494172402,"gpt":0.1983598359246448,"spread":0.1892433284304724,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006137846,0.0002666237,0.0006516394,0.00005642578,0.0001037582,0.00001033527,0.0005316068,0.0008158382,0.004268554],"category_scores_gemma":[0.0004543992,0.0001371613,0.00008722229,0.000369543,0.0008582342,0.00007381351,0.0002585764,0.0006032094,0.0001419436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005006697,"about_ca_system_score_gemma":0.00002162194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005302636,"about_ca_topic_score_gemma":0.0007186105,"domain_scores_codex":[0.9975891,0.0003672911,0.0007465315,0.0005769563,0.0001189925,0.0006011176],"domain_scores_gemma":[0.9985694,0.0008570725,0.0002644747,0.0001197089,0.00006086188,0.0001284575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003772002,0.00009608121,0.01723233,0.000005392875,0.00005165318,0.0000297469,0.0001734949,6.149192e-7,0.9320283,0.0001124224,0.0001675183,0.05006473],"study_design_scores_gemma":[0.0100443,0.004140564,0.6558277,0.0007342733,0.0003087602,0.003600789,0.0008969403,0.0007374117,0.2118199,0.003263312,0.105849,0.002777009],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909197,0.00617031,0.00002810089,0.00175029,0.0004416092,0.0002664926,0.0001030183,0.00005195248,0.0002684932],"genre_scores_gemma":[0.9972515,0.001714857,0.00009308365,0.0005263866,0.000135162,0.00001523198,0.00009262937,0.000003526781,0.0001676725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7202084,"threshold_uncertainty_score":0.9966417,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1747736870","doi":"10.1111/j.1574-695x.2011.00797.x","title":"<i>Escherichia coli</i>from animal reservoirs as a potential source of human extraintestinal pathogenic<i>E. coli</i>","year":2011,"lang":"en","type":"review","venue":"FEMS Immunology & Medical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":318,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique; Armand Frappier Museum; Université de Montréal; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Biology; Neonatal meningitis; Escherichia coli; Pathogenic Escherichia coli; Livestock; Virulence; Antimicrobial; Microbiology; Transmission (telecommunications)","authors":[{"name":"Louise Bélanger","is_ca":true},{"name":"Amélie Garénaux","is_ca":true},{"name":"Josée Harel","is_ca":true},{"name":"Martine Boulianne","is_ca":true},{"name":"Éric Nadeau","is_ca":true},{"name":"Charles M. Dozois","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02458393756284837,"gpt":0.3048586874460313,"spread":0.280274749883183,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001103213,0.001093081,0.002996784,0.0002394751,0.0003154252,0.00001957433,0.002594968,0.003283386,0.0009739484],"category_scores_gemma":[0.001924036,0.0009551518,0.001123352,0.0003743759,0.004006098,0.000006933219,0.002655069,0.002138038,0.0001846569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009944037,"about_ca_system_score_gemma":0.002110392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000844376,"about_ca_topic_score_gemma":0.0002017415,"domain_scores_codex":[0.9926208,0.00210054,0.001756729,0.001665994,0.0002638008,0.001592108],"domain_scores_gemma":[0.9965574,0.0002924973,0.001023246,0.001362833,0.0003729995,0.0003910339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005130802,0.0005813832,0.00003834919,0.00123685,0.003078547,0.0002087288,0.0001081743,1.146871e-7,0.930613,0.0001875939,0.005423548,0.05801062],"study_design_scores_gemma":[0.001207366,0.003148146,0.00009341888,0.00178512,0.0006488355,0.0007780732,0.0001039347,9.281252e-7,0.002126874,0.00007174912,0.9891888,0.0008467502],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.07769605,0.9193426,0.0001180831,0.0001024596,0.000607498,0.0009812328,0.0004212026,0.00006239584,0.0006685099],"genre_scores_gemma":[0.004637897,0.9894739,0.0004328349,0.0003863444,0.000778717,0.0003630262,0.002640076,0.0001842008,0.001102946],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9837652,"threshold_uncertainty_score":0.9999393,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097453265","doi":"10.1111/j.1574-695x.2001.tb00531.x","title":"Probiotic<i>Lactobacillus</i>dose required to restore and maintain a normal vaginal flora","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":306,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Lactobacillus rhamnosus; Bacterial vaginosis; Lactobacillus fermentum; Vaginal flora; Probiotic; Lactobacillus; Biology; Asymptomatic; Flora (microbiology); Microbiology; Vagina; Vaginitis; Internal medicine; Medicine; Bacteria; Lactic acid","authors":[{"name":"Gregor Reid","is_ca":true},{"name":"Dee Beuerman","is_ca":true},{"name":"Christine Heinemann","is_ca":true},{"name":"Andrew W. Bruce","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01598545202095783,"gpt":0.2814284312749628,"spread":0.265442979254005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001691102,0.0005776418,0.0009290712,0.0006809288,0.0005781202,0.00003449688,0.0009499104,0.001642748,0.004005321],"category_scores_gemma":[0.002527036,0.0005115448,0.0001597482,0.0007503494,0.003357404,0.0001974417,0.0009664183,0.002141656,0.004495696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002819687,"about_ca_system_score_gemma":0.0005076309,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005686285,"about_ca_topic_score_gemma":0.0002858385,"domain_scores_codex":[0.9943526,0.001384569,0.0008795969,0.001453925,0.00009310327,0.00183621],"domain_scores_gemma":[0.9975725,0.0006021314,0.0001843944,0.001090633,0.0003119882,0.0002383942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001627195,0.0005479474,0.007503135,0.00002214012,0.0007827403,0.0002994518,0.0004276558,0.000002397876,0.9516519,0.003756385,0.00779071,0.02558838],"study_design_scores_gemma":[0.007224129,0.004219666,0.0631199,0.0001691514,0.0001374922,0.03656754,0.0007318237,0.000004651876,0.06115285,0.0008562802,0.824573,0.001243506],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9753011,0.004933866,0.001143442,0.01281602,0.002685871,0.001098173,0.00007064622,0.0003168122,0.001634028],"genre_scores_gemma":[0.9900803,0.0008783178,0.0004833156,0.001834897,0.0002905567,0.0002073241,0.0003521282,0.00007456514,0.005798627],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.890499,"threshold_uncertainty_score":0.9997336,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4242417467","doi":"10.1111/j.1574-695x.2002.tb00584.x","title":"<i>Burkholderia anthina</i>sp. nov. and<i>Burkholderia pyrrocinia</i>, two additional<i>Burkholderia cepacia</i>complex bacteria, may confound results of new molecular diagnostic tools","year":2002,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Vlaamse regering; Cystic Fibrosis Trust","keywords":"Burkholderia; Burkholderia cepacia complex; Biology; Microbiology; Bacteria; Genetics","authors":[{"name":"Peter Vandamme","is_ca":false},{"name":"Deborah A. Henry","is_ca":true},{"name":"Tom Coenye","is_ca":false},{"name":"Sazini Nzula","is_ca":false},{"name":"Marc Vancanneyt","is_ca":false},{"name":"John J. LiPuma","is_ca":false},{"name":"David P. Speert","is_ca":true},{"name":"John R. W. Govan","is_ca":false},{"name":"Eshwar Mahenthiralingam","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02624643419309017,"gpt":0.2329761638031477,"spread":0.2067297296100576,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000701561,0.0008207002,0.001451395,0.0001068147,0.0003694773,0.0001030936,0.001362826,0.001278033,0.03560728],"category_scores_gemma":[0.004115232,0.00047,0.0003793302,0.0006506418,0.002173069,0.0002784705,0.0007155194,0.0009429244,0.0004873877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009398337,"about_ca_system_score_gemma":0.0001081989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00118832,"about_ca_topic_score_gemma":0.0003638725,"domain_scores_codex":[0.9943097,0.0007898257,0.001656777,0.001453614,0.000362569,0.001427505],"domain_scores_gemma":[0.9938841,0.004067229,0.0007651134,0.0004944152,0.0002486659,0.0005405046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001930811,0.0003414088,0.0002356503,0.00001814822,0.0003122001,0.0001298193,0.0002279344,2.222085e-7,0.9197056,0.0003952334,0.06439646,0.01404421],"study_design_scores_gemma":[0.00901321,0.002354047,0.0356151,0.0004841694,0.0002967673,0.002883465,0.000357975,0.00002253653,0.3496747,0.00114485,0.5960945,0.002058618],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790361,0.002619122,0.000009552036,0.009433396,0.001249715,0.00071053,0.005364086,0.0002559953,0.001321498],"genre_scores_gemma":[0.9877066,0.0006859725,0.0008881643,0.003850691,0.0006430699,0.00008868674,0.005513415,0.00002030866,0.0006030895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5700309,"threshold_uncertainty_score":0.9997752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979619587","doi":"10.1016/s0928-8244(03)00168-8","title":"Application of real-time PCR for quantitative detection of<i>Campylobacter jejuni</i>in poultry, milk and environmental water","year":2003,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Agriculture and Agri-Food Canada; National Natural Science Foundation of China","keywords":"Campylobacter jejuni; Food science; Biology; Real-time polymerase chain reaction; Polymerase chain reaction; Pcr test; Contamination; Microbiology; Detection limit; Raw milk; Food safety; Campylobacter; Bacteria; Chemistry; Chromatography","authors":[{"name":"Chengbo Yang","is_ca":false},{"name":"Yuan Jiang","is_ca":false},{"name":"Kehe Huang","is_ca":false},{"name":"Changqing Zhu","is_ca":false},{"name":"Yulong Yin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009031788196332626,"gpt":0.2190693741302878,"spread":0.2100375859339552,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006836441,0.0001704993,0.0005154168,0.00003816284,0.00005685312,0.000001857032,0.0001912531,0.00057629,0.0002766901],"category_scores_gemma":[0.0002070517,0.0000747072,0.00009501263,0.00008785616,0.0007030787,0.00003419205,0.00006570875,0.0001720858,0.00002142903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002757861,"about_ca_system_score_gemma":0.000009321654,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003233165,"about_ca_topic_score_gemma":0.0001149651,"domain_scores_codex":[0.9981424,0.0004806441,0.000558002,0.0003902675,0.00004263489,0.0003860517],"domain_scores_gemma":[0.998816,0.0008292575,0.0001835436,0.0000888329,0.00002763868,0.00005477426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001947942,0.0001540891,0.01586604,0.000007944146,0.00004707739,8.828409e-7,0.00009981483,3.158265e-7,0.9725761,0.0003285203,0.00001749635,0.01070695],"study_design_scores_gemma":[0.001798777,0.002726959,0.1480937,0.00003337056,0.00005253717,0.0002752385,0.001109652,0.00006236018,0.8216727,0.002808994,0.02096952,0.0003961751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998183,0.0006169119,0.0001549892,0.000370958,0.0001551292,0.0003463819,0.00008829107,0.00001515824,0.00006923968],"genre_scores_gemma":[0.9987243,0.0004689893,0.0001814473,0.0001383766,0.00002804506,0.00005351685,0.0003617388,0.000002246976,0.00004128039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1509033,"threshold_uncertainty_score":0.4444876,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062890113","doi":"10.1016/s0928-8244(02)00460-1","title":"β-Glucan, extracted from oat, enhances disease resistance against bacterial and parasitic infections","year":2003,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Peritoneal cavity; Microbiology; In vivo; Glucan; Mesenteric lymph nodes; Staphylococcus aureus; Spleen; Lymph; Beta-glucan; Immunology; Population; Bacteria; Pathology; Medicine","authors":[{"name":"Cheol‐Heui Yun","is_ca":true},{"name":"Alberto Estrada","is_ca":true},{"name":"Andrew Van Kessel","is_ca":true},{"name":"Byung‐Chul Park","is_ca":false},{"name":"B. Laarveld","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01195094533147666,"gpt":0.2747504656171496,"spread":0.2627995202856729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000323596,0.0003258596,0.0006678222,0.0001857445,0.0002495524,0.0000246196,0.0002098254,0.0006505687,0.003206522],"category_scores_gemma":[0.002788372,0.0002847528,0.000134796,0.0002761413,0.00143446,0.0000560688,0.00008884738,0.001004419,0.0002266116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001443958,"about_ca_system_score_gemma":0.0008855585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001646117,"about_ca_topic_score_gemma":0.0003110481,"domain_scores_codex":[0.9972559,0.0004961586,0.0005700085,0.0007269151,0.0001647628,0.0007862161],"domain_scores_gemma":[0.9980165,0.0006782953,0.0001187293,0.0005228311,0.0001396241,0.0005239831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008314449,0.0005914856,0.003315237,0.00003705316,0.0003322219,0.0003761397,0.00008285706,1.000451e-7,0.9887084,0.0002594398,0.002442874,0.003022736],"study_design_scores_gemma":[0.009397353,0.001067309,0.05936218,0.0005407005,0.0003964273,0.0006163259,0.0002984335,0.000009353693,0.3821549,0.0004201574,0.5448905,0.0008463817],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.985019,0.00858447,0.00004979478,0.003098131,0.001148385,0.0003902546,0.0001816042,0.0001102119,0.001418194],"genre_scores_gemma":[0.9931762,0.003633677,0.00009319122,0.0007261044,0.000378896,0.00007790097,0.0007496422,0.00003415679,0.001130199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6065535,"threshold_uncertainty_score":0.9999605,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063438040","doi":"10.1111/j.1574-695x.2003.tb00648.x","title":"Pro-inflammatory cytokine and chemokine release by human brain microvascular endothelial cells stimulated by<i>Streptococcus suis</i>serotype 2","year":2003,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":127,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Beijing Municipal Education Commission","keywords":"Chemokine; Cytokine; Streptococcus suis; Biology; Microbiology; Immunology; Serotype; Virology; Inflammation; Virulence; Gene","authors":[{"name":"Nathalie Vadeboncoeur","is_ca":true},{"name":"Mariela Segura","is_ca":true},{"name":"Dina Al-Numani","is_ca":true},{"name":"Ghyslaine Vanier","is_ca":true},{"name":"Marcelo Gottschalk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004455882773472203,"gpt":0.2156518696996341,"spread":0.2111959869261619,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001424949,0.0007724474,0.00117093,0.0002840792,0.0005634189,0.00002948561,0.0007121224,0.002478543,0.004172901],"category_scores_gemma":[0.000978136,0.0007089894,0.0002599921,0.0002691665,0.00231385,0.0001463233,0.0002910787,0.001657172,0.001078489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001398857,"about_ca_system_score_gemma":0.0003211605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001816842,"about_ca_topic_score_gemma":0.00001946594,"domain_scores_codex":[0.993991,0.002039665,0.001312966,0.001137296,0.00008702445,0.001432007],"domain_scores_gemma":[0.9977409,0.0005989096,0.0004754406,0.0008665769,0.0001741608,0.0001439652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004576598,0.0003234294,0.0008103215,0.00003778984,0.000851534,0.00005426517,0.0001781617,6.045634e-7,0.9319968,0.0003112027,0.06328615,0.001692053],"study_design_scores_gemma":[0.005020573,0.0004696471,0.0002826697,0.00004689768,0.00006881694,0.0005063986,0.00005224565,0.000001448944,0.5958539,0.00005159933,0.3972194,0.00042642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775256,0.0176635,0.0001722138,0.00148044,0.001305202,0.001092585,0.0002070405,0.0002764866,0.0002769542],"genre_scores_gemma":[0.9867352,0.001075118,0.00004351714,0.001622207,0.00008450598,0.0001766855,0.00308976,0.0001171369,0.007055854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3361429,"threshold_uncertainty_score":0.9996993,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048862104","doi":"10.1111/j.1574-695x.2001.tb00535.x","title":"CpG ODN can re-direct the Th bias of established Th2 immune responses in adult and young mice","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":103,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; Honeywell (Canada)","funders":"","keywords":"HBsAg; CpG Oligodeoxynucleotide; Immune system; Immunology; Alum; Biology; Antigen; CTL*; Antibody; CpG site; TLR9; Adjuvant; Immunization; Virology; Hepatitis B virus; Chemistry; Virus; DNA methylation; CD8","authors":[{"name":"Risini D. Weeratna","is_ca":true},{"name":"Cynthia L. Brazolot Millan","is_ca":true},{"name":"Michael J. McCluskie","is_ca":false},{"name":"Heather L. Davis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01180207862349762,"gpt":0.2380418141541085,"spread":0.2262397355306109,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002479638,0.0004610521,0.001084503,0.00052606,0.0003116394,0.00001860121,0.0009641193,0.001511577,0.001243467],"category_scores_gemma":[0.004323917,0.0003278029,0.0001854899,0.0005878547,0.002966743,0.0001328191,0.0004734459,0.001422132,0.0001553308],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009711564,"about_ca_system_score_gemma":0.0004288939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004455445,"about_ca_topic_score_gemma":0.002381939,"domain_scores_codex":[0.9936575,0.003158611,0.001433874,0.0006594823,0.00006929989,0.001021195],"domain_scores_gemma":[0.9962097,0.002181885,0.0005425756,0.0007985418,0.0002232609,0.00004407818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003493206,0.0001983312,0.01119758,0.00002197039,0.0004549732,0.000080208,0.002070267,8.280321e-7,0.9712485,0.0008583372,0.001700299,0.008675467],"study_design_scores_gemma":[0.01287989,0.002050681,0.2221085,0.000615292,0.0002406868,0.009851985,0.005982179,0.00001754574,0.5948838,0.0005174139,0.1496447,0.001207433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9689213,0.02006617,0.00002309639,0.007177847,0.001832917,0.0005081082,0.00004485152,0.00009435922,0.001331364],"genre_scores_gemma":[0.9900054,0.006036827,0.00002783609,0.0007731167,0.00005286548,0.0001026249,0.0002801181,0.00003734654,0.00268385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3763648,"threshold_uncertainty_score":0.9999174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971913724","doi":"10.1111/j.1574-695x.2006.00067.x","title":"Proinflammatory cytokine and chemokine modulation by<i>Streptococcus suis</i>in a whole-blood culture system","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; McGill University Health Centre","funders":"","keywords":"Biology; Streptococcus suis; Cytokine; Microbiology; Proinflammatory cytokine; Chemokine; Immunology; Inflammation; Monocyte; Tumor necrosis factor alpha; Antibody; Virulence","authors":[{"name":"Mariela Segura","is_ca":true},{"name":"Ghyslaine Vanier","is_ca":true},{"name":"Dina Al-Numani","is_ca":true},{"name":"Sonia Lacouture","is_ca":true},{"name":"Martin Olivier","is_ca":true},{"name":"Marcelo Gottschalk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003883973983335503,"gpt":0.221071002414272,"spread":0.2171870284309365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001996199,0.0003146531,0.0006595176,0.0001804749,0.0001020403,0.00001021011,0.0001057224,0.0008626625,0.0001633554],"category_scores_gemma":[0.0000913942,0.0002452215,0.00009744961,0.0002397922,0.0005124207,0.00005081068,0.00009613561,0.0005673003,0.00007317467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001636686,"about_ca_system_score_gemma":0.0001060945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004640105,"about_ca_topic_score_gemma":0.0001012605,"domain_scores_codex":[0.9980758,0.0001335449,0.000614528,0.000572101,0.00008889858,0.0005150918],"domain_scores_gemma":[0.9992502,0.00007231275,0.0001576455,0.0003195687,0.00007932541,0.000120945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001277758,0.0006552606,0.2193444,0.00008067754,0.0002709937,0.0002972868,0.00004605982,8.021941e-7,0.774057,0.0003504333,0.00266474,0.002104589],"study_design_scores_gemma":[0.03293258,0.002405321,0.7362806,0.0009761074,0.0005410892,0.01048694,0.0002735726,0.000170111,0.1212068,0.000222976,0.09367958,0.0008243527],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931822,0.003239557,0.00007046364,0.001265825,0.0002839372,0.000969571,0.00006941375,0.0001733957,0.0007456559],"genre_scores_gemma":[0.9970891,0.0000711982,0.00009278609,0.000144086,0.0001913593,0.0002479733,0.0009946967,0.00002794139,0.0011408],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6528502,"threshold_uncertainty_score":0.9999843,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1978087809","doi":"10.1016/j.femsim.2003.12.007","title":"Persistence of a<i>Staphylococcus aureus</i>small-colony variant under antibiotic pressure in vivo","year":2004,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Staphylococcus aureus; Microbiology; Biology; Antibiotics; Mutant; In vivo; Phenotype; Mastitis; Antimicrobial; Persistence (discontinuity); Bacteria; Genetics; Gene","authors":[{"name":"Éric Brouillette","is_ca":true},{"name":"Alejandro Martínez Martínez","is_ca":false},{"name":"Bobbi J. Boyll","is_ca":false},{"name":"Norris E. Allen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01454731361012826,"gpt":0.2502856134389638,"spread":0.2357382998288355,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006152284,0.0004611124,0.00135897,0.0004227584,0.00009729492,0.000007818488,0.0007444056,0.001475969,0.0009709142],"category_scores_gemma":[0.0008928781,0.0004042918,0.0003080702,0.0006202358,0.00268461,0.00005458117,0.0003199566,0.001314693,0.00008882175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000232814,"about_ca_system_score_gemma":0.001312436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007298772,"about_ca_topic_score_gemma":0.0007112675,"domain_scores_codex":[0.9964852,0.0002711387,0.001095054,0.000871625,0.0001898318,0.001087103],"domain_scores_gemma":[0.9980368,0.0003363457,0.0003607634,0.0008301386,0.0002128578,0.0002230894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008463797,0.0009153231,0.003355526,0.0002015925,0.0005600003,0.001007006,0.0004619173,0.00006779453,0.9893855,0.001857746,0.0008865188,0.000454725],"study_design_scores_gemma":[0.03481185,0.006093222,0.1237071,0.005028367,0.001236636,0.008074184,0.002330363,0.00004934956,0.737157,0.002408854,0.07689533,0.002207746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823236,0.007297967,0.000939947,0.006197985,0.0009369171,0.0008883033,0.0001060224,0.0001010468,0.001208228],"genre_scores_gemma":[0.9947782,0.0006882914,0.00139327,0.002315109,0.0001137154,0.000018914,0.00005064468,0.00005095268,0.0005909253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2522285,"threshold_uncertainty_score":0.9999424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009421264","doi":"10.1111/j.1574-695x.2002.tb00551.x","title":"Parenteral and mucosal prime-boost immunization strategies in mice with hepatitis B surface antigen and CpG DNA","year":2002,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; Honeywell (Canada)","funders":"","keywords":"Adjuvant; Immune system; CpG Oligodeoxynucleotide; Immunology; Cholera toxin; Antigen; Medicine; HBsAg; Nasal administration; Immunization; Biology; Hepatitis B virus; Internal medicine","authors":[{"name":"Michael J. McCluskie","is_ca":true},{"name":"Risini D. Weeratna","is_ca":false},{"name":"Paul Payette","is_ca":true},{"name":"Heather L. Davis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005991142565279369,"gpt":0.2060708511301595,"spread":0.2000797085648802,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004226616,0.0003666496,0.0006249352,0.0002305057,0.0002387346,0.00003348237,0.000309035,0.0009737296,0.001183735],"category_scores_gemma":[0.0001710636,0.0003084861,0.00004294623,0.0002212089,0.001699783,0.0002681385,0.0002433779,0.0007874802,0.0001960287],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005482202,"about_ca_system_score_gemma":0.0001124063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009148119,"about_ca_topic_score_gemma":0.0005537845,"domain_scores_codex":[0.9972143,0.0008703417,0.0006276544,0.0005515051,0.0000385422,0.0006976258],"domain_scores_gemma":[0.9990223,0.00034674,0.0002141773,0.0002928568,0.00008106627,0.00004284133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005087414,0.0001621157,0.03056799,0.00002343535,0.0002912857,0.00005715501,0.001577905,0.000001864862,0.9579486,0.0008251193,0.0004503052,0.007585509],"study_design_scores_gemma":[0.02044244,0.004135793,0.5287512,0.0007454676,0.0001728704,0.01284668,0.003498089,0.0002255898,0.3610935,0.0005132006,0.06553809,0.002037063],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9747441,0.02214874,0.0002933273,0.001610609,0.0004856205,0.0003458326,0.00002154237,0.00008859762,0.0002616701],"genre_scores_gemma":[0.9912593,0.0074459,0.0001007474,0.0002660503,0.00002439249,0.00002839098,0.0004042766,0.00002912943,0.0004418176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.596855,"threshold_uncertainty_score":0.9999367,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137011699","doi":"10.1111/j.1574-695x.2005.00026.x","title":"Selecting, testing and understanding probiotic microorganisms","year":2005,"lang":"en","type":"review","venue":"FEMS Immunology & Medical Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Probiotic; Biology; Human health; Antibiotics; Biotechnology; Microbiology; Bacteria; Environmental health; Medicine; Genetics","authors":[{"name":"Gregor Reid","is_ca":true},{"name":"Sung Ouk Kim","is_ca":true},{"name":"Gerwald A. Köhler","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07564785219719435,"gpt":0.2802897174804493,"spread":0.204641865283255,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006698611,0.0006915384,0.001826825,0.00008238789,0.0004667007,0.00006530877,0.0008418363,0.002358824,0.0007332985],"category_scores_gemma":[0.0006513344,0.0002884823,0.0002624723,0.000615138,0.0008533074,0.00004655632,0.0006914307,0.001703001,0.0001647619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002897634,"about_ca_system_score_gemma":0.0001743352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007023168,"about_ca_topic_score_gemma":0.0001547541,"domain_scores_codex":[0.9963827,0.0004868083,0.0009507185,0.001019467,0.00009574507,0.001064553],"domain_scores_gemma":[0.9974813,0.00158527,0.0005121767,0.0001499279,0.00005519456,0.0002161724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005814099,0.00009712631,0.00001115231,0.0003550633,0.0002904722,0.00003062552,0.00002243065,1.217623e-8,0.01845233,0.00028443,0.0003218386,0.9801287],"study_design_scores_gemma":[0.0002382578,0.0005897949,0.0000207804,0.002845547,0.000289482,0.003904824,0.00006919084,0.00000275741,0.00004316686,0.0002100772,0.9911433,0.0006427749],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001037372,0.9965235,0.00001495079,0.0004641446,0.0006613235,0.000680357,0.00009983793,0.0001918205,0.00032667],"genre_scores_gemma":[0.001099355,0.9969414,0.0003371329,0.0003418676,0.0005946075,0.00002900844,0.0004309965,0.00001169659,0.0002139545],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9908215,"threshold_uncertainty_score":0.9999567,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2081164937","doi":"10.1016/j.femsim.2004.12.005","title":"Biological importance of the two Toll-like receptors, TLR2 and TLR4, in macrophage response to infection with<i>Candida albicans</i>","year":2005,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Ministero dell’Istruzione, dell’Università e della Ricerca","keywords":"TLR2; Candida albicans; Toll-like receptor; TLR4; Corpus albicans; Microbiology; Biology; Macrophage; Innate immune system; Effector; Antibody opsonization; Receptor; Immunology; Inflammation; Immune system; Phagocytosis; Biochemistry; In vitro","authors":[{"name":"Elisabetta Blasi","is_ca":false},{"name":"Anna Mucci","is_ca":false},{"name":"Rachele Giovanna Neglia","is_ca":false},{"name":"Francesco Pezzini","is_ca":false},{"name":"Bruna Colombari","is_ca":false},{"name":"Danuta Radzioch","is_ca":true},{"name":"Andrea Cossarizza","is_ca":false},{"name":"Enrico Lugli","is_ca":false},{"name":"Gianfranco Volpini","is_ca":false},{"name":"Giuseppe Del Giudice","is_ca":false},{"name":"Samuele Peppoloni","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005426479870513113,"gpt":0.2294700998508983,"spread":0.2240436199803852,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001783723,0.0003696021,0.0007358413,0.0003150897,0.0002106639,0.000008116262,0.0005405165,0.001041747,0.001344173],"category_scores_gemma":[0.0009237274,0.0002421885,0.0001159612,0.0005068782,0.001871655,0.00009698777,0.0004084026,0.001057644,0.0002032774],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001581503,"about_ca_system_score_gemma":0.0002848256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005184876,"about_ca_topic_score_gemma":0.001596768,"domain_scores_codex":[0.9953178,0.002321756,0.0009210305,0.0006229238,0.00005580613,0.000760738],"domain_scores_gemma":[0.9982102,0.0007354625,0.0003218418,0.0005807529,0.00009239985,0.00005933429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005869923,0.0001698958,0.03555887,0.000008121053,0.0001680142,0.00001575949,0.0005301781,0.00000686446,0.9432943,0.0003010017,0.001304228,0.0127728],"study_design_scores_gemma":[0.007164607,0.001891637,0.2899397,0.0002095114,0.0000473516,0.002743168,0.0002096947,0.0000036135,0.2480905,0.00006802059,0.449092,0.0005401456],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872538,0.004450039,0.0000833276,0.006128806,0.001286777,0.000600542,0.00001803102,0.00006344645,0.0001152458],"genre_scores_gemma":[0.9959811,0.0005579757,0.0001378838,0.001988254,0.00005492298,0.00008503711,0.00008183379,0.00002476978,0.001088222],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6952038,"threshold_uncertainty_score":0.9995688,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062749654","doi":"10.1111/j.1574-695x.2009.00571.x","title":"Low concentrations of LL-37 alter IL-8 production by keratinocytes and bronchial epithelial cells in response to proinflammatory stimuli","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Proinflammatory cytokine; Biology; Immunology; Interleukin; Cell biology; Inflammation; Cytokine","authors":[{"name":"Niall C.J. Filewod","is_ca":true},{"name":"Jelena Pistolic","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005672535797427724,"gpt":0.2260516203658375,"spread":0.2203790845684098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006750667,0.0003425463,0.0007305808,0.0001980706,0.0001764887,0.00001167592,0.0003355624,0.0008580036,0.000462381],"category_scores_gemma":[0.0005533806,0.000310949,0.00009111766,0.0001733646,0.001599218,0.0001171268,0.0001447522,0.000751055,0.0001447407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007347649,"about_ca_system_score_gemma":0.0002755372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001185889,"about_ca_topic_score_gemma":0.00007641433,"domain_scores_codex":[0.9969507,0.0008421025,0.0008038747,0.0006481323,0.00003926531,0.0007158869],"domain_scores_gemma":[0.9989265,0.0003651061,0.0002304372,0.0003260669,0.00008661165,0.00006530651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002456333,0.0003770139,0.0002024951,0.00001488204,0.0001051123,0.00001249363,0.0008381389,0.000008019612,0.9784776,0.0001744701,0.01106327,0.006270166],"study_design_scores_gemma":[0.00225965,0.001350112,0.004262877,0.0001128329,0.00002524635,0.0003238422,0.0002562763,0.000002310989,0.9729958,0.00008323108,0.01801526,0.0003125797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905396,0.001812488,0.0001457464,0.005015374,0.001436483,0.0006444248,0.000299089,0.00006337041,0.00004342204],"genre_scores_gemma":[0.9969569,0.0003575674,0.0001875535,0.001063578,0.00009872031,0.0000276135,0.0002228412,0.00001964922,0.00106558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006951992,"threshold_uncertainty_score":0.9999343,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070889752","doi":"10.1111/j.1574-695x.2009.00559.x","title":"Comparable studies of immunostimulating activities<i>in vitro</i>among<i>Mycobacterium bovis</i>bacillus Calmette-Guérin (BCG) substrains","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Mycobacterium bovis; Biology; Microbiology; BCG vaccine; Virology; Mycobacterium; Cell culture; Tumor necrosis factor alpha; In vitro; Mycobacterium tuberculosis; Tuberculosis; Interferon gamma; Vaccination; Cytokine; Immunology; Bacteria; Medicine; Genetics","authors":[{"name":"Daisuke Hayashi","is_ca":false},{"name":"Takemasa Takii","is_ca":false},{"name":"Nagatoshi Fujiwara","is_ca":false},{"name":"Yukiko Fujita","is_ca":false},{"name":"Ikuya Yano","is_ca":false},{"name":"Saburo Yamamoto","is_ca":false},{"name":"Maki Kondo","is_ca":false},{"name":"Emi Yasuda","is_ca":false},{"name":"Emi Inagaki","is_ca":false},{"name":"Keita Kanai","is_ca":false},{"name":"Akiko Fujiwara","is_ca":false},{"name":"Aya Kawarazaki","is_ca":false},{"name":"Taku Chiba","is_ca":false},{"name":"Kikuo Onozaki","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03071518798535875,"gpt":0.3326578241969806,"spread":0.3019426362116219,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001813948,0.0005217952,0.002523613,0.0005455253,0.0001484515,0.000006970312,0.0005601462,0.00114713,0.0004218378],"category_scores_gemma":[0.005131857,0.000392512,0.0003476386,0.0005038243,0.002933731,0.0001170816,0.00029382,0.002052323,0.00007619921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003029836,"about_ca_system_score_gemma":0.0004175401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006882856,"about_ca_topic_score_gemma":0.0001648939,"domain_scores_codex":[0.9945359,0.001131747,0.001588318,0.0008213125,0.000224345,0.00169844],"domain_scores_gemma":[0.9960514,0.002312841,0.000389028,0.0007457876,0.0002001952,0.0003007459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001881689,0.0006245036,0.01361203,0.00009198939,0.0008017689,0.0003650488,0.0005530759,0.00001173431,0.9662479,0.0001144516,0.002092479,0.01360338],"study_design_scores_gemma":[0.02328297,0.01172899,0.5404446,0.001915674,0.0004495128,0.007041554,0.003581936,0.0007589543,0.377453,0.001000887,0.03049072,0.00185117],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9784077,0.0105872,0.00004589445,0.008742399,0.0007034418,0.0005915614,0.00007117302,0.0001082963,0.0007423168],"genre_scores_gemma":[0.9930826,0.002354007,0.0004194834,0.003314227,0.0001939599,0.00004252118,0.0003060051,0.00003307833,0.0002541007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5887948,"threshold_uncertainty_score":0.9998527,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045177802","doi":"10.1111/j.1574-695x.2006.00068.x","title":"Carbohydrate-containing components of biofilms produced<i>in vitro</i>by some staphylococcal strains related to orthopaedic prosthesis infections","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Microbiology; In vitro; Biology; Biofilm; Carbohydrate; Bacteria; Biochemistry; Genetics","authors":[{"name":"Irina Sadovskaya","is_ca":false},{"name":"Philippe Chaignon","is_ca":false},{"name":"Grigorij Kogan","is_ca":false},{"name":"Ali Chokr","is_ca":false},{"name":"Evgeny Vinogradov","is_ca":true},{"name":"S. Jabbouri","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004754324520399082,"gpt":0.2127156617691031,"spread":0.207961337248704,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004700964,0.000328759,0.0005848276,0.0002274298,0.0001062165,0.00001017375,0.0003160595,0.00100832,0.00005320285],"category_scores_gemma":[0.0002472659,0.0003106295,0.0001603703,0.0003117885,0.0006483764,0.000008464989,0.0002462195,0.0004510187,0.00002306986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004680876,"about_ca_system_score_gemma":0.0001809685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001036833,"about_ca_topic_score_gemma":0.0001614253,"domain_scores_codex":[0.9972488,0.0003537657,0.0008460627,0.0007183172,0.00008487783,0.0007481868],"domain_scores_gemma":[0.999105,0.00004509788,0.000224476,0.0004142957,0.00008915659,0.0001220058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003220291,0.0003746683,0.003989477,0.00001209246,0.000127891,0.0000167946,0.00004645512,0.000005361779,0.9928389,0.00007795035,0.0003789029,0.001809484],"study_design_scores_gemma":[0.001559437,0.0009547253,0.009000736,0.00005110801,0.00002249559,0.0001310201,0.00004962962,0.000005950615,0.9777603,0.00002638388,0.01010485,0.0003333736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962526,0.001124321,0.00001225348,0.001033728,0.000801995,0.0004717822,0.0001803655,0.00003782915,0.00008512042],"genre_scores_gemma":[0.9971697,0.00008925916,0.0001579653,0.0003798921,0.0001453624,0.00003704435,0.001884686,0.00003917774,0.00009690676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0150786,"threshold_uncertainty_score":0.9999346,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2003282663","doi":"10.1111/j.1574-695x.2007.00345.x","title":"Evaluating<i>Burkholderia pseudomallei</i>Bip proteins as vaccines and Bip antibodies as detection agents","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Defence Research and Development Canada","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Burkholderia pseudomallei; Melioidosis; Microbiology; Biology; Virulence; Burkholderia; Antibody; Virology; Pathogen; Monoclonal antibody; Bacteria; Immunology; Gene","authors":[{"name":"Chris Druar","is_ca":false},{"name":"Fei Yu","is_ca":false},{"name":"Jodie L. Barnes","is_ca":false},{"name":"Richard T. Okinaka","is_ca":false},{"name":"Narisara Chantratita","is_ca":false},{"name":"Steve Beg","is_ca":false},{"name":"Chad W. Stratilo","is_ca":true},{"name":"Andrew J. Olive","is_ca":false},{"name":"Glenn Soltes","is_ca":false},{"name":"Michelle Russell","is_ca":true},{"name":"Direk Limmathurotsakul","is_ca":false},{"name":"Robert Norton","is_ca":false},{"name":"Sally X. Ni","is_ca":false},{"name":"William D. Picking","is_ca":false},{"name":"Paul J. Jackson","is_ca":false},{"name":"Don I.H. Stewart","is_ca":false},{"name":"Vadim Tsvetnitsky","is_ca":false},{"name":"Wendy L. Picking","is_ca":false},{"name":"John W. Cherwonogrodzky","is_ca":true},{"name":"Natkunam Ketheesan","is_ca":false},{"name":"Sharon J. Peacock","is_ca":false},{"name":"Erik J. Wiersma","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02620964869610469,"gpt":0.3406925533759254,"spread":0.3144829046798207,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001540702,0.0004228823,0.0008134129,0.0004675582,0.000391025,0.00002096615,0.000216051,0.001238974,0.002000596],"category_scores_gemma":[0.00210096,0.0003500149,0.0001711787,0.0003938519,0.0008410458,0.00008447759,0.0002682477,0.0009388332,0.0004163199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001102232,"about_ca_system_score_gemma":0.0002821867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009569143,"about_ca_topic_score_gemma":0.0002410005,"domain_scores_codex":[0.9970664,0.0002678786,0.0008151574,0.0007727947,0.0001836299,0.0008941086],"domain_scores_gemma":[0.9983741,0.0003070774,0.0002563481,0.0005011534,0.0002542839,0.0003070618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007143209,0.0003354276,0.004216936,0.00006115624,0.0004590306,0.0001566451,0.0002305355,1.909169e-7,0.9346016,0.0001559951,0.000533741,0.05853441],"study_design_scores_gemma":[0.0142288,0.01074751,0.1809774,0.0005793936,0.0006910075,0.03643156,0.0008476134,0.00005767992,0.6229872,0.0006950247,0.1307594,0.0009974129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886928,0.0034,0.0006126782,0.00244621,0.002388971,0.001041199,0.000007458547,0.0002471066,0.001163568],"genre_scores_gemma":[0.9934381,0.001444463,0.0008495157,0.002338954,0.0005657534,0.0001047401,0.00008340154,0.0000544893,0.001120536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3116144,"threshold_uncertainty_score":0.9998952,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062739222","doi":"10.1111/j.1574-695x.2006.00191.x","title":"Molecular methods used in clinical laboratory: prospects and pitfalls","year":2007,"lang":"en","type":"review","venue":"FEMS Immunology & Medical Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Centers for Disease Control and Prevention","keywords":"Borrelia burgdorferi; Biology; Molecular diagnostics; Borrelia; Treponema; Pathogen; Lyme disease; Identification (biology); Clinical microbiology; Syphilis; Molecular epidemiology; Diagnostic test; Virology; Computational biology; Microbiology; Immunology; Bioinformatics; Medicine; Genetics; Human immunodeficiency virus (HIV); Ecology; Veterinary medicine","authors":[{"name":"Muhammad Morshed","is_ca":true},{"name":"Min-Kuang Lee","is_ca":true},{"name":"Danielle Jorgensen","is_ca":true},{"name":"Judith L. Isaac‐Renton","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06436305340644181,"gpt":0.4677591520092946,"spread":0.4033960986028528,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.003868518,0.0006238592,0.004262709,0.0007100492,0.00006457259,0.00001085041,0.0003248423,0.004486253,0.0003868723],"category_scores_gemma":[0.002572643,0.0004651424,0.0005365949,0.0008186253,0.001798491,0.00002920787,0.0003500886,0.003796976,0.00015631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001967732,"about_ca_system_score_gemma":0.001186388,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007267186,"about_ca_topic_score_gemma":0.00004946855,"domain_scores_codex":[0.9938813,0.00223891,0.001925476,0.001025426,0.00009463727,0.0008341883],"domain_scores_gemma":[0.9972702,0.001194298,0.0004445117,0.000672601,0.0001018593,0.0003165479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006122082,0.0005279418,0.001059,0.001835311,0.001101407,0.001185186,0.00003056906,9.296034e-9,0.001760835,0.0006101879,0.0004721192,0.9913562],"study_design_scores_gemma":[0.001663308,0.001008395,0.0004899598,0.003634635,0.0005763415,0.002713504,0.00001137646,9.195696e-7,0.0000745854,0.0000321105,0.9894087,0.0003861707],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009226613,0.9868402,0.0003393494,0.0002830062,0.001858549,0.001140423,0.00002949904,0.0001050538,0.0001772972],"genre_scores_gemma":[0.0001868152,0.9964793,0.00155088,0.0009536798,0.0002957132,0.00009282676,0.0002464484,0.00008411353,0.0001101974],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.99097,"threshold_uncertainty_score":0.99978,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049573711","doi":"10.1111/j.1574-695x.2009.00645.x","title":"Autoactivation of the AggR regulator of enteroaggregative<i>Escherichia coli in vitro</i>and<i>in vivo</i>","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Enteroaggregative Escherichia coli; Biology; Fimbria; DNA footprinting; Regulator; Primer extension; Virulence; Microbiology; Escherichia coli; Plasmid; Response regulator; Transcriptional regulation; Luciferase; Molecular biology; Promoter; Genetics; Gene; Enterobacteriaceae; Gene expression; Nucleotide; Transfection; Mutant","authors":[{"name":"Nicholas Morin","is_ca":false},{"name":"Chelsea Tirling","is_ca":true},{"name":"Sabine Ivison","is_ca":true},{"name":"Ajinder Kaur","is_ca":false},{"name":"James P. Nataro","is_ca":false},{"name":"Theodore S. Steiner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005535061424848674,"gpt":0.2398008406666449,"spread":0.2342657792417963,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004641037,0.0001700131,0.0004254936,0.000093706,0.00003636162,0.000001941703,0.0004090621,0.0004571298,0.00002412628],"category_scores_gemma":[0.0009560902,0.0001283297,0.00007947195,0.0002662695,0.001140282,0.000004371136,0.0003182685,0.0003833546,7.039698e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003302344,"about_ca_system_score_gemma":0.000193409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001165867,"about_ca_topic_score_gemma":0.0001497746,"domain_scores_codex":[0.9982653,0.0004625298,0.0004861872,0.0003375967,0.0000885094,0.0003598479],"domain_scores_gemma":[0.9992313,0.00009723385,0.0002260677,0.000329607,0.00007709674,0.00003874267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005180332,0.0001894797,0.005396133,0.00001474024,0.00006926071,0.000002485957,0.0001694025,0.000001476562,0.9919158,0.00006825296,0.0001393483,0.001515597],"study_design_scores_gemma":[0.001397433,0.0003858214,0.09887657,0.00007729124,0.000006440163,0.00002048881,0.00009486076,0.0000173994,0.8957254,0.0001235768,0.003170841,0.0001038818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944983,0.003033194,0.00002666627,0.001810533,0.0001539405,0.0002818334,0.00001656353,0.000005138951,0.0001738643],"genre_scores_gemma":[0.9983324,0.0008085704,0.0001723747,0.0004916567,0.00003223135,0.0000217577,0.00001716418,0.000009009997,0.0001148792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0961904,"threshold_uncertainty_score":0.5233135,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2035522966","doi":"10.1111/j.1574-695x.2011.00911.x","title":"Characterization of Bordetella holmesii isolates from patients with pertussis-like illness in the Netherlands","year":2011,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Bordetella pertussis; Microbiology; Biology; Locus (genetics); Virology; Gene; Genetics; Bacteria","authors":[{"name":"Frits R. Mooi","is_ca":false},{"name":"Sylvia M. Bruisten","is_ca":false},{"name":"Ineke Linde","is_ca":false},{"name":"Frans A.G. Reubsaet","is_ca":false},{"name":"Kees Heuvelman","is_ca":false},{"name":"Saskia van der Lee","is_ca":false},{"name":"Audrey J. King","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00773537498907919,"gpt":0.1992264911765803,"spread":0.1914911161875011,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003016905,0.0002770521,0.000555878,0.0001686344,0.0001480169,0.00000621701,0.0005940888,0.0009096001,0.003250784],"category_scores_gemma":[0.00009326382,0.0001641373,0.00008147865,0.0002583257,0.000793397,0.00008219713,0.0001268352,0.0005887932,0.0001268062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000217741,"about_ca_system_score_gemma":0.00008147926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001278467,"about_ca_topic_score_gemma":0.0003663743,"domain_scores_codex":[0.9978428,0.0007018332,0.0005829677,0.000395949,0.00001894537,0.0004574708],"domain_scores_gemma":[0.9988903,0.0002632501,0.0002829969,0.000442792,0.00009921387,0.00002148541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008968707,0.0006748227,0.08907195,0.000006081895,0.0003108899,0.000002790732,0.002717006,3.316999e-8,0.9004428,0.0001076997,0.0001688241,0.005600256],"study_design_scores_gemma":[0.005542801,0.001443134,0.8645653,0.00009578405,0.00009586956,0.0001412989,0.0005332099,8.09005e-7,0.08703696,0.0001089531,0.04002025,0.0004156771],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996419,0.0006781687,0.00008837993,0.0002544208,0.001885069,0.0003158898,0.0001408824,0.0000408641,0.0001774003],"genre_scores_gemma":[0.997642,0.0002293856,0.00002162533,0.0003556196,0.00004916813,0.00004882435,0.001543381,0.00002184786,0.00008810191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8134058,"threshold_uncertainty_score":0.9976604,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3156555198","doi":"10.1016/s0928-8244(01)00269-3","title":"Probiotic Lactobacillus dose required to restore and maintain a normal vaginal flora","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Lactobacillus rhamnosus; Bacterial vaginosis; Lactobacillus fermentum; Probiotic; Vaginal flora; Lactobacillus; Asymptomatic; Biology; Flora (microbiology); Vaginitis; Vagina; Microbiology; Ingestion; Internal medicine; Gastroenterology; Medicine; Bacteria; Lactic acid","authors":[{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01695467505460192,"gpt":0.2843312336280924,"spread":0.2673765585734905,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001574057,0.0005313132,0.0008706359,0.000683766,0.0005318846,0.00003115351,0.0008724352,0.001547497,0.00396619],"category_scores_gemma":[0.002380209,0.0004662559,0.0001449416,0.0007121582,0.003122352,0.0001744702,0.0008664405,0.002013887,0.004556317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002847743,"about_ca_system_score_gemma":0.0004840364,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005977816,"about_ca_topic_score_gemma":0.0003097171,"domain_scores_codex":[0.9947098,0.00133281,0.00080805,0.001348003,0.00008416898,0.001717204],"domain_scores_gemma":[0.997757,0.0005739719,0.000168142,0.00100914,0.0002762152,0.0002155259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001607254,0.0005207315,0.007903994,0.00002284767,0.0007790934,0.0003394501,0.0004295506,0.000002509461,0.9511347,0.00357497,0.005264211,0.0284207],"study_design_scores_gemma":[0.00904647,0.005316888,0.1068448,0.000207583,0.0001697321,0.04986722,0.0008736796,0.0000059488,0.0531415,0.001061414,0.7720009,0.001463873],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9781618,0.005109459,0.000817026,0.01069246,0.002478144,0.001009435,0.00005427511,0.0002849793,0.001392386],"genre_scores_gemma":[0.9917362,0.0007117363,0.000339927,0.001277619,0.0002411287,0.0001830406,0.0002806565,0.00006187057,0.005167804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8979932,"threshold_uncertainty_score":0.9997789,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016913953","doi":"10.1111/j.1574-695x.2009.00574.x","title":"Comparative<i>in vivo</i>and<i>in vitro</i>analyses of putative virulence factors of<i>Burkholderia pseudomallei</i>using lipopolysaccharide, capsule and flagellin mutants","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Royal Golden Jubilee (RGJ) Ph.D. Programme; Thailand Research Fund; National Science and Technology Development Agency; Mahidol University","keywords":"Flagellin; Microbiology; Biology; Virulence; Burkholderia pseudomallei; Lipopolysaccharide; Mutant; Melioidosis; Bacterial capsule; Pathogen; Virulence factor; Burkholderia; Bacteria; Immunology; Biochemistry; Gene","authors":[{"name":"Chanthiwa Wikraiphat","is_ca":false},{"name":"Jaruek Charoensap","is_ca":false},{"name":"Pongsak Utaisincharoen","is_ca":false},{"name":"Surasakdi Wongratanacheewin","is_ca":false},{"name":"Suwimol Taweechaisupapong","is_ca":false},{"name":"Donald E. Woods","is_ca":true},{"name":"Jan G.M. Bolscher","is_ca":false},{"name":"Stitaya Sirisinha","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04222926014583318,"gpt":0.3344638918116722,"spread":0.292234631665839,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004480411,0.0003285828,0.00156089,0.0005734417,0.00005938206,0.000004883748,0.0001656484,0.0005898725,0.0001556742],"category_scores_gemma":[0.0002933217,0.0002740544,0.000115377,0.0004338278,0.001406545,0.00008415032,0.0001038318,0.0006096127,0.000002163686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006122385,"about_ca_system_score_gemma":0.0001990251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001465205,"about_ca_topic_score_gemma":0.00005913139,"domain_scores_codex":[0.997551,0.0003261485,0.0009909248,0.0005282483,0.0001071174,0.0004965363],"domain_scores_gemma":[0.9988304,0.0003270729,0.0003343872,0.0002661036,0.0001054931,0.000136488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004447662,0.000427184,0.001949404,0.00004991698,0.0001840843,0.00005173435,0.001397383,0.000009399322,0.9946499,0.00003394217,0.000008964111,0.0007932798],"study_design_scores_gemma":[0.002944749,0.0006794251,0.0142957,0.0002482195,0.0001174982,0.0005358136,0.0006671139,0.0002396494,0.9798637,0.00008179062,0.0001246399,0.0002016986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925073,0.006114724,0.0002373415,0.0003210037,0.0002824673,0.0003804528,0.00006584241,0.0000227218,0.00006810496],"genre_scores_gemma":[0.9971047,0.001663431,0.0008768174,0.0002495808,0.00003229858,0.000009266016,0.00002953135,0.0000140118,0.00002036885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01478624,"threshold_uncertainty_score":0.9999712,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1505086866","doi":"10.1111/j.1574-695x.2010.00693.x","title":"Cellular responses of A549 alveolar epithelial cells to serially collected<i>Pseudomonas aeruginosa</i>from cystic fibrosis patients at different stages of pulmonary infection","year":2010,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"NOSM University; Lakehead University","funders":"","keywords":"Pseudomonas aeruginosa; Microbiology; Biology; Proinflammatory cytokine; Cystic fibrosis; Virulence; Pyocyanin; A549 cell; Immunology; Cytokine; Apoptosis; Inflammation; Bacteria; Quorum sensing; Gene","authors":[{"name":"Nicole Hawdon","is_ca":true},{"name":"Pouya Sadeghi Aval","is_ca":true},{"name":"Rebecca J. Barnes","is_ca":true},{"name":"Sean Gravelle","is_ca":true},{"name":"Jessica Rosengren","is_ca":true},{"name":"Sarah Khan","is_ca":true},{"name":"Oana Ciofu","is_ca":false},{"name":"Helle Krogh Johansen","is_ca":false},{"name":"Niels Høiby","is_ca":false},{"name":"Marina Ulanova","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003722606371371804,"gpt":0.200623006989846,"spread":0.1969004006184742,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002362329,0.0003439615,0.0006564586,0.0001401805,0.0001233028,0.000007267431,0.0003642289,0.001173166,0.0003550231],"category_scores_gemma":[0.0005978996,0.0003011076,0.0002004954,0.0001399452,0.0007644096,0.000005409435,0.00061208,0.0003585643,0.00002481741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003121393,"about_ca_system_score_gemma":0.0001440117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006426613,"about_ca_topic_score_gemma":0.0004466538,"domain_scores_codex":[0.9975278,0.0004987197,0.0007466885,0.0006128016,0.0001152611,0.0004987537],"domain_scores_gemma":[0.9985163,0.0001959413,0.0003622278,0.0005539103,0.0002156047,0.0001559934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00236416,0.000366296,0.01133757,0.00002362461,0.0002183547,0.000008170861,0.00006626668,0.000001065769,0.9838719,0.000007776631,0.0005106842,0.001224151],"study_design_scores_gemma":[0.001108739,0.001116862,0.05892448,0.00003796392,0.00005573509,0.00003191265,0.00000855134,0.000001733284,0.9259111,0.000007827812,0.01254064,0.0002545077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949274,0.0002749104,0.00007652731,0.0001586308,0.003096645,0.0003600061,0.001064621,0.00002005847,0.00002119118],"genre_scores_gemma":[0.9972712,0.0002032273,0.0004288988,0.0001732125,0.0002701025,0.00001377657,0.001420106,0.00003598301,0.0001835354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05796083,"threshold_uncertainty_score":0.9999441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993697234","doi":"10.1111/j.1574-695x.2007.00300.x","title":"Increased tolerance of<i>Staphylococcus aureus</i>to vancomycin in viscous media","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Staphylococcus aureus; Biofilm; Microbiology; Vancomycin; Antibiotics; Bacteria; Multidrug tolerance; Biology","authors":[{"name":"Victoria Kostenko","is_ca":true},{"name":"Howard Ceri","is_ca":true},{"name":"Robert J. Martinuzzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004853072611065034,"gpt":0.2296206368035339,"spread":0.2247675641924688,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00094061,0.0002774492,0.0005587789,0.0002048128,0.00005040192,0.000004672854,0.0004832808,0.000991488,0.0001293468],"category_scores_gemma":[0.000770682,0.0002571131,0.0001178121,0.0002646591,0.0005807257,0.000003630154,0.0003109644,0.0003929916,0.00003321281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003250973,"about_ca_system_score_gemma":0.0001969084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000439006,"about_ca_topic_score_gemma":0.001987003,"domain_scores_codex":[0.9976334,0.0002052862,0.0007308132,0.0005731151,0.00008383073,0.0007735557],"domain_scores_gemma":[0.9989135,0.0001487726,0.0001670297,0.0004889696,0.00009356507,0.0001882037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006854237,0.0001353003,0.00301833,0.000009674051,0.0000603821,0.00005853898,0.0001329487,0.000002010021,0.9877192,0.00006424105,0.0009279939,0.007185943],"study_design_scores_gemma":[0.001796174,0.0005476715,0.03481416,0.00007224713,0.00001122368,0.0001180687,0.00008573943,0.000001665804,0.8858481,0.0000197605,0.07636844,0.0003167285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947388,0.002370266,0.0003787258,0.0005009774,0.001426755,0.0002443428,0.00006338866,0.00001973392,0.0002570457],"genre_scores_gemma":[0.996333,0.000172826,0.0008367627,0.001926829,0.0003924062,0.000007747101,0.0002690727,0.00002792786,0.00003344271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1018711,"threshold_uncertainty_score":0.9999881,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001535873","doi":"10.1111/j.1574-695x.2006.00114.x","title":"Production and characterization of neutralizing monoclonal antibodies that recognize an epitope in domain 2 of<i>Bacillus anthracis</i>protective antigen","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Public Health Agency of Canada","funders":"Public Health Agency","keywords":"Epitope; Bacillus anthracis; Monoclonal antibody; Biology; Virology; Antigen; Epitope mapping; Antibody; Conformational epitope; Neutralization; Recombinant DNA; Linear epitope; Anthrax vaccines; Microbiology; Anthrax toxin; Immunology; Fusion protein; Immunization; Bacteria; Biochemistry; Virus; Gene","authors":[{"name":"Michael J. Gubbins","is_ca":true},{"name":"Jody D. Berry","is_ca":true},{"name":"Cindi R. Corbett","is_ca":true},{"name":"Jeremy Mogridge","is_ca":true},{"name":"Xin Yuan","is_ca":true},{"name":"Lisa Schmidt","is_ca":true},{"name":"Brigitte Nicolas","is_ca":true},{"name":"Amin Kabani","is_ca":true},{"name":"Raymond S. W. Tsang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01096764041801254,"gpt":0.2484990345771411,"spread":0.2375313941591285,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006289259,0.0001823278,0.0004309019,0.0001436341,0.00006495408,0.000005819072,0.0002062943,0.0005854046,0.0000474796],"category_scores_gemma":[0.0001913538,0.0001655246,0.00005707767,0.0001397515,0.001084711,0.00001492023,0.0001599521,0.0002402063,0.000001904251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001553827,"about_ca_system_score_gemma":0.000109599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004078845,"about_ca_topic_score_gemma":0.0003538872,"domain_scores_codex":[0.9982324,0.0003825477,0.0004615855,0.0004881962,0.00007464588,0.0003606119],"domain_scores_gemma":[0.9993271,0.00002792055,0.0002167507,0.0002487115,0.0001332404,0.00004625139],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005254279,0.0001634642,0.01555063,0.00003310468,0.00005516341,0.000005603463,0.0001244974,6.824076e-7,0.9715695,0.00006024521,0.0000120932,0.01189958],"study_design_scores_gemma":[0.0007117115,0.000562296,0.1555461,0.0000583123,0.000006442213,0.0001413689,0.00007541067,0.000004075534,0.8409539,0.0002145896,0.001569906,0.0001558748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968635,0.001612545,0.0003396464,0.0002990672,0.0004144586,0.0003350214,0.00008462308,0.000008227423,0.00004284121],"genre_scores_gemma":[0.9964066,0.002484761,0.0002584793,0.0000334763,0.0001738581,0.00001968405,0.0005764294,0.00001671397,0.00003002787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1399955,"threshold_uncertainty_score":0.6749898,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1521812393","doi":"10.1111/j.1574-695x.2010.00694.x","title":"<i>Staphylococcus aureus</i>biofilm formation and tolerance to antibiotics in response to oscillatory shear stresses of physiological levels","year":2010,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biofilm; Shear stress; Shear (geology); Staphylococcus aureus; Antibiotics; Microbiology; Biology; Sloughing; Biophysics; Bacteria; Materials science; Composite material; Medicine; Pathology","authors":[{"name":"Victoria Kostenko","is_ca":true},{"name":"M. Mehdi Salek","is_ca":true},{"name":"Pooria Sattari","is_ca":true},{"name":"Robert J. Martinuzzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01243103134982245,"gpt":0.2635686715543792,"spread":0.2511376402045568,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007606524,0.000172234,0.0003336837,0.0001272708,0.0000611252,0.00001023139,0.0003367131,0.0006378521,0.00009208517],"category_scores_gemma":[0.002604546,0.0001571545,0.00004777929,0.0001657926,0.0004528168,0.000007024709,0.0003113678,0.000329724,0.00002243607],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001374367,"about_ca_system_score_gemma":0.0001159162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000404225,"about_ca_topic_score_gemma":0.0003010405,"domain_scores_codex":[0.9983022,0.0003253313,0.0005043847,0.0004670362,0.00005585709,0.0003452459],"domain_scores_gemma":[0.9991129,0.0001137793,0.0001090642,0.0004104769,0.0001203061,0.0001334483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004703795,0.00009122427,0.002985177,0.00001608158,0.00001450922,0.000002647429,0.0001557803,0.00000454917,0.993877,0.00003686972,0.0004892145,0.001856551],"study_design_scores_gemma":[0.0006546249,0.0005958126,0.2626117,0.0000392341,0.000004478343,0.00003915748,0.0001040689,0.000009918096,0.7218111,0.00002580054,0.01390831,0.0001957424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973587,0.0001804871,0.0001998786,0.001306624,0.000546371,0.000291617,0.00007982444,0.0000174671,0.00001905016],"genre_scores_gemma":[0.997564,0.00003971936,0.001126996,0.001037894,0.00009470141,0.000005830952,0.00007817974,0.0000113021,0.00004134644],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2720659,"threshold_uncertainty_score":0.6408575,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165623470","doi":"10.1111/j.1574-695x.2006.00088.x","title":"Effect of milk fermented with a<i>Lactobacillus helveticus</i>R389(+) proteolytic strain on the immune system and on the growth of 4T1 breast cancer cells in mice","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Moncton","funders":"","keywords":"Lactobacillus helveticus; Lactobacillus casei; Biology; Tumor necrosis factor alpha; Endocrinology; Internal medicine; Lactobacillus; Andrology; Immunology; Medicine; Fermentation; Biochemistry","authors":[{"name":"Mirta Rachid","is_ca":true},{"name":"Chantal Matar","is_ca":true},{"name":"Jairo Duarte","is_ca":true},{"name":"Gabriela Perdigón","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002590007498650073,"gpt":0.1933017220632117,"spread":0.1907117145645616,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008745123,0.000297968,0.0005327655,0.00007414858,0.00007794776,0.000005696,0.00043412,0.0004228798,0.00004314027],"category_scores_gemma":[0.0001025816,0.0001432804,0.0001068186,0.0001619733,0.001503105,0.000002634425,0.0001496611,0.0004008107,0.000003825664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004456575,"about_ca_system_score_gemma":0.00009926216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00114511,"about_ca_topic_score_gemma":0.0001598699,"domain_scores_codex":[0.9976629,0.0009407284,0.0004693823,0.0004298483,0.0001097565,0.0003873672],"domain_scores_gemma":[0.998886,0.0003294593,0.0003073948,0.0003630604,0.00008060199,0.00003341985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00166806,0.0001566644,0.001155546,0.00008750652,0.0002636943,0.00000816296,0.00002533233,0.000003859518,0.9953533,0.0004378482,0.00005838211,0.000781631],"study_design_scores_gemma":[0.001493183,0.002539606,0.007395371,0.0003503097,0.0000471386,0.0001528403,0.00007160385,0.00001107129,0.9876608,0.00001187008,0.000117817,0.0001484315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946912,0.002085627,0.00001902307,0.001860878,0.00009559969,0.0008968947,0.0002222257,0.000007804847,0.0001207382],"genre_scores_gemma":[0.999262,0.000172311,0.00000898248,0.0001962922,0.00005563857,0.0001793928,0.0000616935,0.00001881118,0.00004487772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007692555,"threshold_uncertainty_score":0.5842804,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165688418","doi":"10.1111/j.1574-695x.2001.tb01577.x","title":"Priming of immune responses to hepatitis B surface antigen in young mice immunized in the presence of maternally derived antibodies","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; Ottawa Hospital; Parks Canada","funders":"Medical Research Council","keywords":"HBsAg; CpG Oligodeoxynucleotide; Antibody; Biology; Antigen; Immunology; Virology; Immune system; Immunization; DNA vaccination; Priming (agriculture); CpG site; Hepatitis B virus; Virus; DNA methylation; Genetics","authors":[{"name":"Risini D. Weeratna","is_ca":true},{"name":"Cynthia L. Brazolot Millan","is_ca":true},{"name":"Michael J. McCluskie","is_ca":false},{"name":"Claire‐Anne Siegrist","is_ca":false},{"name":"Heather L. Davis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01716172517832209,"gpt":0.2909388244181549,"spread":0.2737770992398328,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001682494,0.000267128,0.001212227,0.0003519781,0.00006836378,0.000004351557,0.0007422767,0.0004115786,0.0001599633],"category_scores_gemma":[0.003582133,0.0002013723,0.0001179585,0.0005516635,0.001351211,0.00005350039,0.0004728552,0.0006197721,0.00002651823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008185953,"about_ca_system_score_gemma":0.0002989534,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04060885,"about_ca_topic_score_gemma":0.01261713,"domain_scores_codex":[0.9965479,0.0009263846,0.001310102,0.0003844626,0.0001802127,0.0006509009],"domain_scores_gemma":[0.9976295,0.001266583,0.000308801,0.0005581803,0.0001852622,0.00005171893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009496437,0.0001662114,0.4497911,0.00003759947,0.0001166871,0.0001934946,0.003651966,0.000001049767,0.5445146,0.00001981935,0.00003750234,0.00052037],"study_design_scores_gemma":[0.001885966,0.0005484475,0.8713121,0.0008169808,0.00002620225,0.0008601256,0.0006733843,0.000008085512,0.1232458,0.00002673341,0.0004532966,0.0001428583],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867477,0.00866702,0.00007417471,0.003199414,0.0003643814,0.0006954984,0.00003161653,0.00002471235,0.000195479],"genre_scores_gemma":[0.9849287,0.01360559,0.0008447202,0.0003824642,0.00002241004,0.000028901,0.00003107922,0.00002187812,0.0001342919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.421521,"threshold_uncertainty_score":0.9657798,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969332364","doi":"10.1111/j.1574-695x.2005.00030.x","title":"Use of virulence factor-specific egg yolk-derived immunoglobulins as a promising alternative to antibiotics for prevention of attaching and effacing<i>Escherichia coli</i>infections","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Intimin; Microbiology; Biology; Escherichia coli; Enteropathogenic Escherichia coli; Virulence; Antibody; Bacterial adhesin; Yolk; Shiga toxin; Virology; Virulence factor; Enterobacteriaceae; Immunology; Gene","authors":[{"name":"Francis Girard","is_ca":true},{"name":"Isabelle Batisson","is_ca":true},{"name":"Gabriela Martínez","is_ca":true},{"name":"Cynthia Breton","is_ca":true},{"name":"J Harel","is_ca":true},{"name":"John M. Fairbrother","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02232674705757155,"gpt":0.3019262205755046,"spread":0.2795994735179331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003207102,0.0002524416,0.0005188185,0.0001212131,0.0001688339,0.00001406477,0.000286305,0.0004409647,0.0000178011],"category_scores_gemma":[0.001072936,0.0002376687,0.0001423264,0.0001738901,0.0009271243,0.00001226211,0.0004455184,0.0002883238,0.000003006606],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000393121,"about_ca_system_score_gemma":0.0001725237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004501465,"about_ca_topic_score_gemma":0.0001441283,"domain_scores_codex":[0.9980088,0.0003123516,0.000598847,0.0005219181,0.00009597943,0.0004620441],"domain_scores_gemma":[0.9987475,0.0002647076,0.0002951782,0.0003221305,0.0002959075,0.00007452712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003873664,0.0002888552,0.003555111,0.0000555788,0.0003480961,0.000002214736,0.0001550453,0.00002481852,0.9929386,0.0002519491,0.0001325228,0.001859807],"study_design_scores_gemma":[0.001427295,0.002618919,0.02644268,0.0001649423,0.00003790132,0.00005788853,0.0001109653,0.00004241187,0.9547697,0.0001344329,0.01392407,0.0002687736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831247,0.002402147,0.01288443,0.0002788065,0.0003072794,0.0008123154,0.0001383616,0.00001727701,0.00003473493],"genre_scores_gemma":[0.9939382,0.001287394,0.00426203,0.0001016918,0.00009976482,0.00002507227,0.0001393005,0.00002704545,0.0001194697],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03816891,"threshold_uncertainty_score":0.9691848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069138819","doi":"10.1111/j.1574-695x.2008.00434.x","title":"Evidence of horizontal gene transfer between human and animal commensal<i>Escherichia coli</i>strains identified by microarray","year":2008,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Horizontal gene transfer; Genome; Genetics; Gene; DNA microarray; Chromosome; Escherichia coli; Gene expression","authors":[{"name":"Elena Grasselli","is_ca":false},{"name":"Patrice François","is_ca":false},{"name":"Michaela Gutacker","is_ca":false},{"name":"Brian Gettler","is_ca":false},{"name":"Cinzia Benagli","is_ca":false},{"name":"Maruska Convert","is_ca":false},{"name":"Patrick Boerlin","is_ca":true},{"name":"Jacques Schrenzel","is_ca":false},{"name":"Jean-Claude Piffaretti","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02062544195202539,"gpt":0.2491878423299558,"spread":0.2285624003779304,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003209665,0.0003077949,0.0006015233,0.00005374724,0.0002403282,0.000005293154,0.0004649317,0.0007122417,0.00004916268],"category_scores_gemma":[0.0001008287,0.0002935713,0.0001334419,0.00008196852,0.002187011,0.000002475212,0.0002814101,0.0003347572,0.000005367112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001578152,"about_ca_system_score_gemma":0.0001277856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001483484,"about_ca_topic_score_gemma":0.00005692426,"domain_scores_codex":[0.9979862,0.0002500834,0.0005798982,0.0005992252,0.00007649992,0.000508101],"domain_scores_gemma":[0.9992422,0.00007926297,0.0001098936,0.0003500101,0.00008869755,0.0001299418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001246069,0.00008907598,0.01519886,0.0000179038,0.0004473036,0.00001061725,0.0002129764,4.065301e-8,0.9819623,0.00002715717,0.001558412,0.0003507501],"study_design_scores_gemma":[0.001431316,0.002015495,0.06417529,0.00003412109,0.00006820956,0.0002918636,0.00008159185,2.905905e-7,0.9228737,0.00001591853,0.008687211,0.0003249973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9752593,0.02324735,0.0002435888,0.000515381,0.0002303424,0.000231196,0.0002086255,0.000008891654,0.00005531612],"genre_scores_gemma":[0.9933739,0.005387811,0.0002006433,0.0004256941,0.0001679557,0.00002180219,0.0003176834,0.00002986048,0.00007460946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0590886,"threshold_uncertainty_score":0.9999517,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2072130805","doi":"10.1111/j.1574-695x.2007.00299.x","title":"Population genetics and antibiotic susceptibility of invasive<i>Haemophilus influenzae</i>in Manitoba, Canada, from 2000 to 2006","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"Health Canada","keywords":"Multilocus sequence typing; Serotype; Biology; Microbiology; Ampicillin; Haemophilus influenzae; Antibiotic resistance; Ciprofloxacin; Sulfamethoxazole; Virology; Amoxicillin; Typing; Antibiotics; Genotype; Genetics","authors":[{"name":"Michelle L. Sill","is_ca":true},{"name":"Dennis K. S. Law","is_ca":true},{"name":"Jianwei Zhou","is_ca":true},{"name":"Stuart Skinner","is_ca":true},{"name":"John Wylie","is_ca":true},{"name":"Raymond S. W. Tsang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01091156975316546,"gpt":0.2327290680535112,"spread":0.2218174983003457,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005912266,0.0002905686,0.0007479715,0.0002647267,0.000114606,0.000005369279,0.0003351174,0.001028969,0.0007193811],"category_scores_gemma":[0.0005384096,0.0002716311,0.0000598802,0.0002842768,0.0004775383,0.00004284595,0.0002721694,0.0005595121,0.00006183948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002319185,"about_ca_system_score_gemma":0.0004479597,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6946227,"about_ca_topic_score_gemma":0.9425507,"domain_scores_codex":[0.9974263,0.0003479391,0.000957879,0.0005652539,0.00002603204,0.0006766482],"domain_scores_gemma":[0.9985498,0.000626199,0.0002157491,0.0004181133,0.0001115579,0.00007860518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002504587,0.0001178067,0.2935372,0.00001152258,0.0001185671,0.00001101747,0.0001135215,0.000001843817,0.6979575,0.00004359873,0.0007096297,0.007127383],"study_design_scores_gemma":[0.001598242,0.0003201642,0.8825584,0.00007156292,0.00003296665,0.0002246052,0.0002021485,4.193396e-7,0.1046261,0.0001015355,0.01001387,0.0002499217],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908512,0.005461201,0.00003595874,0.0005701138,0.002379411,0.0003695735,0.0002487274,0.00003130108,0.00005250864],"genre_scores_gemma":[0.9983463,0.0002471543,0.0001026165,0.0006229292,0.00008976021,0.000004757675,0.0005026666,0.00001939687,0.0000644754],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5933313,"threshold_uncertainty_score":0.9999736,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031861259","doi":"10.1111/j.1574-695x.2006.00059.x","title":"Importance of complement 3 and mannose receptors in phagocytosis of<i>Paracoccidioides brasiliensis</i>conidia by<i>Nramp1</i>congenic macrophages lines","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Biology; Phagocytosis; Mannose; Microbiology; Complement receptor; Mannose receptor; Paracoccidioides brasiliensis; Paracoccidioides; Congenic; Complement (music); Macrophage; Complement system; Virology; Immunology; Antibody; Genetics; Complementation; In vitro; Biochemistry; Phenotype; Gene","authors":[{"name":"María del P. Jiménez","is_ca":false},{"name":"Ángela Restrepo","is_ca":false},{"name":"Danuta Radzioch","is_ca":true},{"name":"Luz Elena Cano","is_ca":false},{"name":"Luis F. García","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003763965642443691,"gpt":0.2300071456572258,"spread":0.2262431800147821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003343781,0.0002252663,0.0005209206,0.00009398669,0.00005326516,0.000004645437,0.0002428965,0.0004328438,0.0001571519],"category_scores_gemma":[0.0001626137,0.000205921,0.00009733947,0.0001446438,0.001024625,0.000005369024,0.0001809052,0.0001829963,0.000003471155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002181879,"about_ca_system_score_gemma":0.000102382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004220239,"about_ca_topic_score_gemma":0.001055256,"domain_scores_codex":[0.9981607,0.0001977448,0.0007534191,0.0004420704,0.00005744774,0.00038866],"domain_scores_gemma":[0.9991779,0.00008141814,0.0002984049,0.0002968163,0.00009982269,0.0000456377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001852739,0.0002008896,0.04601134,0.00002982653,0.0001035164,0.000005253784,0.00001541179,0.000001215777,0.9490364,0.00009058503,0.002228524,0.002091806],"study_design_scores_gemma":[0.001409856,0.0005008578,0.03506294,0.00004293614,0.00002611518,0.0000984915,0.00004087017,0.000001547197,0.9246532,0.00006639183,0.03788653,0.0002102917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984286,0.01454569,0.0000818656,0.0002106472,0.000441046,0.0001985257,0.0001430768,0.000009271306,0.00008389666],"genre_scores_gemma":[0.9961821,0.002600187,0.0002806249,0.0001718498,0.00009650075,0.00002597402,0.0004326941,0.0000174097,0.0001926383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03565801,"threshold_uncertainty_score":0.8397213,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078119293","doi":"10.1111/j.1574-695x.2007.00289.x","title":"Serological diagnosis of syphilis: comparison of the Trep-Chek IgG enzyme immunoassay with other screening and confirmatory tests","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Syphilis; Serology; Immunoassay; Rapid plasma reagin; Immunology; Medicine; Antibody; Virology; Treponema","authors":[{"name":"Raymond S. W. Tsang","is_ca":true},{"name":"Irene Martín","is_ca":true},{"name":"Allan Lau","is_ca":true},{"name":"Pam Sawatzky","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02262025955723644,"gpt":0.2934780076713372,"spread":0.2708577481141007,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007955422,0.0002990731,0.001122801,0.0001348642,0.00009657887,0.000003181766,0.0003014112,0.0007123614,0.0005869395],"category_scores_gemma":[0.0005731278,0.0001665463,0.0001688602,0.0002147361,0.002957252,0.00002607368,0.0002199588,0.0006230161,0.000009983703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004543987,"about_ca_system_score_gemma":0.0001285245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003637437,"about_ca_topic_score_gemma":0.0002480295,"domain_scores_codex":[0.9977379,0.0002890044,0.0008625688,0.000426031,0.0001756594,0.0005087882],"domain_scores_gemma":[0.9973742,0.001390493,0.0004332373,0.0005294677,0.0001417611,0.0001308446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000779527,0.001376675,0.9204532,0.00004936632,0.001078679,0.00004520586,0.0006390541,7.491536e-7,0.06441136,0.0004295073,0.0006204413,0.01011624],"study_design_scores_gemma":[0.00535618,0.002683288,0.8725579,0.0005263186,0.0003446219,0.001125864,0.0007413052,0.000005691279,0.1055078,0.00003338966,0.0109282,0.0001894699],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813139,0.01495863,0.0001033838,0.00255649,0.000241092,0.0004939632,0.00003376197,0.00003878382,0.0002600376],"genre_scores_gemma":[0.9978502,0.0003297549,0.0004289475,0.001191664,0.00005801025,0.00005294964,0.00003204788,0.0000251175,0.000031352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04789528,"threshold_uncertainty_score":0.9997562,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3152682396","doi":"10.1016/s0928-8244(00)00233-9","title":"Oral probiotics can resolve urogenital infections","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Bacterial vaginosis; Lactobacillus rhamnosus; Vagina; Lactobacillus fermentum; Probiotic; Lactobacillus; Biology; Vaginitis; Asymptomatic; Microbiology; Genitourinary system; Internal medicine; Medicine; Bacteria; Lactic acid","authors":[{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01377929415372571,"gpt":0.2694579791333997,"spread":0.255678684979674,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003679619,0.0003010689,0.0005479302,0.0004060853,0.0002388592,0.00001162065,0.0002645625,0.0007448067,0.00308153],"category_scores_gemma":[0.0005781056,0.0002677761,0.0001971226,0.0005185353,0.001058121,0.0000521186,0.000291806,0.001144414,0.000905487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002580987,"about_ca_system_score_gemma":0.0003375254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002787242,"about_ca_topic_score_gemma":0.000460922,"domain_scores_codex":[0.9978295,0.0002228174,0.0005534604,0.0005137909,0.0001102219,0.0007702425],"domain_scores_gemma":[0.9987519,0.0001617457,0.0001242002,0.0005930121,0.0001392322,0.000229953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003150554,0.04566902,0.2692795,0.0002676018,0.01147748,0.01202654,0.001848022,0.00003098047,0.4704528,0.01508402,0.0883247,0.08238877],"study_design_scores_gemma":[0.004599831,0.009967435,0.02589804,0.0000908479,0.0004370083,0.04642157,0.0002352976,0.00003097011,0.002553055,0.0002623514,0.909028,0.0004756066],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735889,0.0008934309,0.0009568572,0.01364826,0.002108059,0.0007312843,0.00002359052,0.0004478221,0.007601785],"genre_scores_gemma":[0.9907278,0.0005786349,0.0006392429,0.003205923,0.0003168255,0.00008137505,0.0003797128,0.00004918253,0.004021321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8207033,"threshold_uncertainty_score":0.9999775,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038215083","doi":"10.1111/j.1574-695x.2008.00509.x","title":"Considerations on <i>Chlamydia trachomatis</i> disease expression","year":2008,"lang":"en","type":"review","venue":"FEMS Immunology & Medical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Chlamydia; Chlamydia trachomatis; Biology; Pathogen; Disease; Immune system; Chlamydiales; Immunology; Chlamydiaceae; Chlamydia trachomatis infection; Host (biology); Virology; Genetics; Medicine; Pathology","authors":[{"name":"Robert C. Brunham","is_ca":true},{"name":"Michael L. Rekart","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04111510765885249,"gpt":0.3379316072923811,"spread":0.2968164996335286,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.0007306868,0.001320701,0.003623898,0.001144436,0.001099744,0.00003363307,0.001287238,0.00464245,0.01315775],"category_scores_gemma":[0.006044378,0.001026572,0.001200533,0.0005484683,0.004508409,0.0001313041,0.0006532299,0.006197882,0.02041323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004111191,"about_ca_system_score_gemma":0.002864056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006287886,"about_ca_topic_score_gemma":0.00001399955,"domain_scores_codex":[0.9893466,0.004695091,0.001962406,0.002197894,0.0001396227,0.001658379],"domain_scores_gemma":[0.9919515,0.004553012,0.0007633312,0.002212481,0.0002609002,0.0002587284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002648625,0.002724504,0.00003846855,0.00152152,0.003325331,0.001208037,0.000184762,0.000001320655,0.01651306,0.002357209,0.1854959,0.786365],"study_design_scores_gemma":[0.00117115,0.0002859106,0.0001095541,0.003445769,0.0002921424,0.01198543,0.00001350836,9.415485e-8,0.0007441731,0.000179793,0.9809496,0.0008229058],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006287274,0.9887338,0.00004857221,0.0004993703,0.005492257,0.001953407,0.000674055,0.0004398759,0.001529917],"genre_scores_gemma":[0.0004893072,0.9903241,0.00005317152,0.0004899364,0.0004013731,0.001036001,0.003737299,0.0001686189,0.003300225],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7954536,"threshold_uncertainty_score":0.9999545,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090814041","doi":"10.1111/j.1574-695x.2011.00901.x","title":"Global gene expression profiling of<i>Ehrlichia ruminantium</i>at different stages of development","year":2011,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Ehrlichia; Gene; Virulence; Microbiology; Ehrlichia chaffeensis; Rickettsia; Obligate; Intracellular parasite; Genome; Genetics; Virology; Polymerase chain reaction; Virus; Tick","authors":[{"name":"Ludovic Pruneau","is_ca":false},{"name":"Loïc Emboulé","is_ca":false},{"name":"Pryscellia Gely","is_ca":false},{"name":"Isabel Marcelino","is_ca":false},{"name":"Bernard Mari","is_ca":false},{"name":"Valérie Pinarello","is_ca":false},{"name":"Christian Sheikboudou","is_ca":false},{"name":"Dominique Martinez","is_ca":false},{"name":"France Daigle","is_ca":true},{"name":"Thierry Lefrançois","is_ca":false},{"name":"Damien F. Meyer","is_ca":false},{"name":"Nathalie Vachiéry","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01269663043700425,"gpt":0.2354338295006304,"spread":0.2227371990636261,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003585009,0.000488643,0.001158273,0.0002109357,0.0002042958,0.000002196565,0.0008677744,0.001322105,0.003989012],"category_scores_gemma":[0.0004232416,0.0003865754,0.0002521391,0.0002148858,0.002244376,0.00005116143,0.0009958929,0.0004650852,0.0003007618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001818161,"about_ca_system_score_gemma":0.0003766489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000210202,"about_ca_topic_score_gemma":0.0001441502,"domain_scores_codex":[0.996331,0.0007109244,0.001274231,0.0007169468,0.00007046217,0.0008964372],"domain_scores_gemma":[0.9981361,0.000253219,0.0006777526,0.0006568254,0.0001892669,0.00008681747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006354006,0.0009094962,0.1728624,0.00006033261,0.0007510555,0.00002136167,0.0004192205,2.77886e-7,0.8212812,0.0004124296,0.0005332875,0.002113617],"study_design_scores_gemma":[0.001917567,0.0005642273,0.127729,0.0001177945,0.00008779973,0.0005874436,0.00009692877,1.360333e-7,0.8658507,0.00008085088,0.002669533,0.0002979848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842437,0.01182656,0.0004864161,0.00004512753,0.002206401,0.0004126595,0.000215724,0.0001292778,0.0004341601],"genre_scores_gemma":[0.9978226,0.0003548976,0.0008073432,0.0001125744,0.00003082712,0.00006534044,0.0005475933,0.00003169633,0.0002270596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04513339,"threshold_uncertainty_score":0.9999744,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1845904832","doi":"10.1111/j.1574-695x.2010.00681.x","title":"Development of SNAP-tag-mediated live cell labeling as an alternative to GFP in<i>Porphyromonas gingivalis</i>","year":2010,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"National Institutes of Health","keywords":"Porphyromonas gingivalis; Snap; Green fluorescent protein; Microbiology; Chemistry; Biology; Cell biology; Bacteria; Computer science; Genetics; Gene","authors":[{"name":"Ophélie Nicolle","is_ca":false},{"name":"Astrid Rouillon","is_ca":false},{"name":"Hélène Guyodo","is_ca":false},{"name":"Zohreh Tamanai‐Shacoori","is_ca":false},{"name":"Fatiha Chandad","is_ca":true},{"name":"Vincent Meuric","is_ca":false},{"name":"Martine Bonnaure‐Mallet","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007990218651085615,"gpt":0.2802682236692335,"spread":0.2722780050181479,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004141449,0.0002431951,0.0003634572,0.0001673366,0.00007239143,0.000006564443,0.000604482,0.0005751157,0.0004047226],"category_scores_gemma":[0.0005134336,0.0002200021,0.0000667695,0.0001498924,0.0004606599,0.000005802417,0.0004268794,0.0005371971,0.0001767837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004562335,"about_ca_system_score_gemma":0.0006679886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009144925,"about_ca_topic_score_gemma":0.004347933,"domain_scores_codex":[0.9980159,0.0001702659,0.0004741124,0.0005964216,0.0001173218,0.000625918],"domain_scores_gemma":[0.9990148,0.00007520534,0.0001309753,0.0003966525,0.0001308743,0.0002515076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002850996,0.0004710243,0.001556793,0.000008580117,0.0001932238,0.00005813424,0.0007189245,0.000001211032,0.9912236,0.00003808234,0.0001709993,0.005274353],"study_design_scores_gemma":[0.002165812,0.0009734383,0.002450723,0.00003378562,0.00001282049,0.00008066243,0.0002006983,0.000003966759,0.9701869,0.0001034625,0.02354023,0.0002474372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977821,0.0006875388,0.00006001206,0.0002718663,0.0005343901,0.0003009562,0.00006511781,0.00001446234,0.0002835543],"genre_scores_gemma":[0.9957941,0.0001841236,0.001866899,0.0007399741,0.0001272452,0.00008366199,0.001014567,0.00002832344,0.0001611202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02336923,"threshold_uncertainty_score":0.8971425,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052552936","doi":"10.1111/j.1574-695x.1997.tb01092.x","title":"Characterisation of an outer membrane protein of Moraxella catarrhalis","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Wellcome Trust","keywords":"Moraxella catarrhalis; Moraxella (Branhamella) catarrhalis; Bacterial outer membrane; Biology; Microbiology; Moraxella; Neisseriaceae; Haemophilus influenzae; Neisseria meningitidis; Transferrin; Neisseria; Bacterial adhesin; Molecular mass; Antigen; Biochemistry; Bacteria; Gene; Escherichia coli; Immunology; Genetics; Enzyme","authors":[{"name":"Kate Mathers","is_ca":false},{"name":"David Goldblatt","is_ca":false},{"name":"Christoph Aebi","is_ca":false},{"name":"Rong-hua Yu","is_ca":true},{"name":"Anthony B. Schryvers","is_ca":true},{"name":"Eric J. Hansen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007357230536047707,"gpt":0.2441669410251672,"spread":0.2368097104891195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002717404,0.0001517184,0.0005592225,0.0001939896,0.00004493253,0.000001551419,0.0001587587,0.000607598,0.0006989187],"category_scores_gemma":[0.0001292125,0.0001191173,0.0001124719,0.0001483111,0.0009204805,0.00004249173,0.00005271037,0.0003476713,0.0000377788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003030016,"about_ca_system_score_gemma":0.0001989095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006133702,"about_ca_topic_score_gemma":0.00007911518,"domain_scores_codex":[0.9985811,0.0002042134,0.0006156261,0.0002514559,0.00007921703,0.0002684577],"domain_scores_gemma":[0.9991387,0.00005219252,0.0002491375,0.0003526534,0.0001379408,0.00006942399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001177006,0.00048752,0.002759842,0.00006097662,0.0001114031,0.00004192982,0.0000961438,3.800437e-7,0.9937145,0.000221415,0.00009096857,0.002297298],"study_design_scores_gemma":[0.00237862,0.001600366,0.06365384,0.0001439827,0.00009658983,0.001766514,0.00006783495,0.00001241874,0.9012243,0.0001081028,0.02877953,0.0001679104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965754,0.0002383374,0.00006294375,0.001953638,0.0003671245,0.0003252829,0.00005564753,0.00004351808,0.0003781308],"genre_scores_gemma":[0.9985119,0.00002982862,0.00008872976,0.000409606,0.0001702145,0.00002861191,0.0004509818,0.00001542204,0.0002947402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09249013,"threshold_uncertainty_score":0.7652669,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071438017","doi":"10.1111/j.1574-695x.2008.00416.x","title":"Effect of the HP0159 ORF mutation on the lipopolysaccharide structure and colonizing ability of<i>Helicobacter pylori</i>","year":2008,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Lipopolysaccharide; Helicobacter pylori; Mutant; Heptose; Biology; Microbiology; Gene; Molecular biology; Genetics; Immunology","authors":[{"name":"Eleonora Altman","is_ca":true},{"name":"Vandana Chandan","is_ca":true},{"name":"Suzon Larocque","is_ca":true},{"name":"Annie Aubry","is_ca":true},{"name":"Susan M. Logan","is_ca":true},{"name":"Evgeny Vinogradov","is_ca":true},{"name":"Jianjun Li","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00854367053238685,"gpt":0.2388194733592183,"spread":0.2302758028268314,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007342022,0.0002977426,0.0008672106,0.00009470774,0.0002191059,0.000001890724,0.0003586533,0.0006976325,0.0001509432],"category_scores_gemma":[0.002694022,0.0001502255,0.0001583724,0.0001946937,0.0044923,0.00002747512,0.0003128333,0.001254354,0.00001065963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006967699,"about_ca_system_score_gemma":0.0001403971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001204154,"about_ca_topic_score_gemma":0.0000370637,"domain_scores_codex":[0.9972356,0.001091655,0.0006616851,0.0004145818,0.0001451742,0.0004512971],"domain_scores_gemma":[0.997243,0.001584107,0.0003404868,0.0005958761,0.0001651982,0.00007132889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001333219,0.00008227824,0.1526735,0.00006411831,0.0009381815,0.00003537726,0.0008319647,5.721765e-7,0.8401681,0.0001001721,0.0003884205,0.003384101],"study_design_scores_gemma":[0.004988462,0.005825501,0.4603035,0.0002684256,0.0004252046,0.004945798,0.0001103575,0.00000962426,0.5211024,0.00007268034,0.001770573,0.0001775239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9856477,0.00085742,0.00000907203,0.011787,0.000934811,0.0006452001,0.00004955588,0.00003326566,0.00003594882],"genre_scores_gemma":[0.9975486,0.0002401425,0.0000248683,0.001977227,0.0001090869,0.00002835802,0.00002533504,0.00001969498,0.0000266221],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3190657,"threshold_uncertainty_score":0.9982169,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1692755931","doi":"10.1111/j.1574-695x.2011.00830.x","title":"Transcriptional analysis of antibiotic resistance and virulence genes in multiresistant hospital-acquired MRSA","year":2011,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Virulence; Microbiology; Staphylococcus aureus; Antibiotics; Biology; Efflux; Antibiotic resistance; Gene; Methicillin-resistant Staphylococcus aureus; Staphylococcal infections; Drug resistance; Phenotype; Antibacterial agent; Bacteria; Genetics","authors":[{"name":"Mireille Pruneau","is_ca":true},{"name":"Gabriel Mitchell","is_ca":true},{"name":"Hélène Moisan","is_ca":true},{"name":"Émilie Dumont-Blanchette","is_ca":true},{"name":"Christian L. Jacob","is_ca":true},{"name":"François Malouin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01534644652374191,"gpt":0.2508181365281311,"spread":0.2354716900043892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0005001564,0.0003179809,0.001305808,0.0007024847,0.00007299758,0.000003968528,0.0003639315,0.0007168812,0.0007486251],"category_scores_gemma":[0.0004486427,0.0002833572,0.0002528356,0.0009700184,0.003023323,0.0000611197,0.0001136659,0.0003698021,0.00001557728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009704636,"about_ca_system_score_gemma":0.0002507102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004024955,"about_ca_topic_score_gemma":0.001268047,"domain_scores_codex":[0.9972838,0.0002383098,0.0009890846,0.0007166546,0.0001512102,0.0006209856],"domain_scores_gemma":[0.9986672,0.0002381252,0.0002851859,0.0004983281,0.0001592161,0.0001518989],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001408897,0.0006310977,0.07724904,0.0001076078,0.00138199,0.0002796335,0.0009840172,3.411119e-7,0.9147601,0.001121172,0.0001091092,0.001967058],"study_design_scores_gemma":[0.003023826,0.0005733942,0.9394662,0.0004384592,0.0008839123,0.00006635748,0.0004150471,0.00003403523,0.05159793,0.000113879,0.00300377,0.0003831958],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829328,0.01472881,0.0003513978,0.0006848703,0.0003345831,0.0003724334,0.0001236407,0.00004494861,0.0004265192],"genre_scores_gemma":[0.994128,0.002948086,0.0021548,0.0003580484,0.0000270244,0.00001343953,0.0001037514,0.00002487652,0.0002419489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8631621,"threshold_uncertainty_score":0.9999619,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039069911","doi":"10.1111/j.1574-695x.2006.00147.x","title":"A subset of<i>Actinobacillus pleuropneumoniae in vivo</i>induced promoters respond to branched-chain amino acid limitation","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service; National Research Council Canada; University of Pittsburgh; Michigan State University; U.S. Department of Agriculture","keywords":"Actinobacillus pleuropneumoniae; Virulence; Biology; Amino acid; Valine; Gene; Branched-chain amino acid; Microbiology; Biosynthesis; Isoleucine; Biochemistry; Genetics; Leucine","authors":[{"name":"Trevor Wagner","is_ca":false},{"name":"Martha H. Mulks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01357531762591708,"gpt":0.2612983434613987,"spread":0.2477230258354816,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001221151,0.0004478608,0.0009299482,0.001006279,0.0002000223,0.00001647368,0.0006913912,0.001348892,0.002120831],"category_scores_gemma":[0.001159372,0.0004222329,0.0002319609,0.0009058173,0.0009940953,0.0001014213,0.0003872669,0.001140957,0.001077933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002127646,"about_ca_system_score_gemma":0.0004503996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002550906,"about_ca_topic_score_gemma":0.001954193,"domain_scores_codex":[0.9950498,0.001436101,0.001185016,0.0009053897,0.00007003081,0.001353691],"domain_scores_gemma":[0.9981417,0.0005872498,0.0002819623,0.0006557399,0.0002173268,0.000116038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008347337,0.0007377113,0.002536762,0.00003480575,0.0001736627,0.00008416118,0.0004310689,0.000005665063,0.9877267,0.0006163835,0.003267597,0.003550726],"study_design_scores_gemma":[0.004628472,0.001335219,0.02123676,0.0001544709,0.00004681899,0.001117316,0.0003044536,0.000003955737,0.9218076,0.0002522925,0.04853622,0.0005764131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993185,0.001876811,0.0001856542,0.001981532,0.0011164,0.0008189959,0.000274981,0.0001128677,0.0004477738],"genre_scores_gemma":[0.9974275,0.0000991013,0.00008014236,0.0005074623,0.00007401939,0.0001174091,0.000551972,0.00004547792,0.001096951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06591912,"threshold_uncertainty_score":0.9999475,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1564665279","doi":"10.1111/j.1574-695x.2007.00334.x","title":"The two-component system<i>sivS/R</i>regulates virulence in<i>Streptococcus iniae</i>","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University of Alberta Hospital; Alberta Hospital Edmonton; University of Toronto","funders":"","keywords":"Streptococcus iniae; Biology; Virulence; Microbiology; Mutant; Molecular biology; Plasmid; Streptolysin; Gene; Genetics","authors":[{"name":"Shelly Bolotin","is_ca":true},{"name":"Jeffrey Fuller","is_ca":true},{"name":"Darrin J. Bast","is_ca":true},{"name":"Joyce C. S. de Azavedo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007850581355309746,"gpt":0.2746175985018594,"spread":0.2667670171465497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00106306,0.0003409392,0.0006602649,0.0002153093,0.0003140271,0.00001447486,0.0003641553,0.0006078283,0.0002314894],"category_scores_gemma":[0.0003565697,0.0002178719,0.0001921693,0.0004051006,0.001450161,0.00004068769,0.000225176,0.0009092226,0.0005085559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003427527,"about_ca_system_score_gemma":0.0002060929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006823285,"about_ca_topic_score_gemma":0.0004946393,"domain_scores_codex":[0.9971203,0.0002381621,0.0009141894,0.000578286,0.0001346747,0.001014426],"domain_scores_gemma":[0.9978245,0.0009845917,0.0001984599,0.0006626784,0.0001082198,0.0002214723],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00128511,0.001480913,0.2743894,0.00007401661,0.001259744,0.001916978,0.0002970013,0.000002932382,0.6081849,0.005019852,0.001231655,0.1048575],"study_design_scores_gemma":[0.02208569,0.002784976,0.6374017,0.001247659,0.0003318831,0.01146017,0.001509443,0.00009290668,0.1154227,0.0004640192,0.2062534,0.0009454846],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872497,0.00555196,0.000154121,0.001602989,0.001935351,0.0009536822,0.00001277706,0.0001804309,0.002358985],"genre_scores_gemma":[0.9980159,0.0004183007,0.00009466178,0.0006880811,0.0002150153,0.0001591911,0.0000826146,0.00002864316,0.0002975809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4927622,"threshold_uncertainty_score":0.8884559,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1980387970","doi":"10.1111/j.1574-695x.2000.tb01533.x","title":"Quantitative assessment of IgG antibodies to<i>Helicobacter pylori</i>and outcome of ischaemic heart disease","year":2000,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Heart and Stroke Foundation of Canada","keywords":"Helicobacter pylori; Serology; Internal medicine; Medicine; Myocardial infarction; Disease; Gastroenterology; Ischaemic heart disease; Socioeconomic status; Immunology; Spirillaceae; Antibody; Population; Gastritis","authors":[{"name":"Abdulhamid M. Alkout","is_ca":false},{"name":"E. Ramsay","is_ca":false},{"name":"Doris A.C. MacKenzie","is_ca":false},{"name":"D. M. Weir","is_ca":false},{"name":"Alastair J. Bentley","is_ca":false},{"name":"Robert A. Elton","is_ca":false},{"name":"Sheena Sutherland","is_ca":false},{"name":"A. Busuttil","is_ca":false},{"name":"C C Blackwell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01899321936184165,"gpt":0.3219746584286757,"spread":0.3029814390668341,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005109643,0.0003715193,0.001519066,0.00030358,0.00008320759,0.000002906884,0.0002728988,0.0004826007,0.0009631487],"category_scores_gemma":[0.000700818,0.0002980028,0.0001739134,0.0002424421,0.00252906,0.00005473091,0.0002970689,0.0007912971,0.00009390106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006279321,"about_ca_system_score_gemma":0.000194568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001448382,"about_ca_topic_score_gemma":0.00003332311,"domain_scores_codex":[0.9970077,0.0003734257,0.001174612,0.0006050773,0.0001566272,0.0006825065],"domain_scores_gemma":[0.9983075,0.0004069781,0.0002168718,0.0005128679,0.0002444156,0.0003113345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001618786,0.0004439555,0.6957206,0.00009881239,0.001250807,0.00007288388,0.0005148846,0.000001359959,0.2968773,0.0002645517,0.001043988,0.002092031],"study_design_scores_gemma":[0.003228583,0.00327705,0.977767,0.0003115453,0.0003320815,0.0004754702,0.0001891003,0.00001229642,0.002427547,0.00004833656,0.01171116,0.0002198388],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9766893,0.002289465,0.0000858042,0.01954335,0.0005075174,0.000499976,0.0001339564,0.00005593431,0.0001946697],"genre_scores_gemma":[0.9914505,0.0008941815,0.00175175,0.005312333,0.00006050695,0.00004250349,0.0001112008,0.00003252273,0.0003444616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2944498,"threshold_uncertainty_score":0.9999501,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996185308","doi":"10.1111/j.1574-695x.2012.00939.x","title":"Protective role of a-galactosylceramide-stimulated natural killer T cells in genital tract infection with<i>Chlamydia muridarum</i>","year":2012,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China; Shandong University","keywords":"Natural killer T cell; Immunology; Biology; Chlamydia; Immune system; Interferon; Cytokine; T cell","authors":[{"name":"Hong Wang","is_ca":false},{"name":"Lei Zhao","is_ca":false},{"name":"Ying Peng","is_ca":false},{"name":"Juan Liu","is_ca":false},{"name":"Mei Qi","is_ca":false},{"name":"Qiang Chen","is_ca":false},{"name":"Xi Yang","is_ca":true},{"name":"Weiming Zhao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004350149866092255,"gpt":0.2100780551047559,"spread":0.2057279052386637,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0006915796,0.0004690923,0.000832792,0.000522541,0.0001565331,0.000007822736,0.0003201941,0.00160462,0.00450471],"category_scores_gemma":[0.0003290766,0.0003800385,0.0002043254,0.0004290165,0.001075209,0.0003242855,0.0001625597,0.002324936,0.001034207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002212445,"about_ca_system_score_gemma":0.0001832478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001334411,"about_ca_topic_score_gemma":0.0001649461,"domain_scores_codex":[0.9963979,0.001024702,0.0009155811,0.0005241283,0.00006192228,0.001075801],"domain_scores_gemma":[0.9985635,0.0003468956,0.0004353399,0.0003988651,0.0001918218,0.00006352543],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001526952,0.001039397,0.01346967,0.00001756557,0.0004826884,0.000007726877,0.0008655029,0.000008937144,0.975915,0.0001024692,0.0009921541,0.005571981],"study_design_scores_gemma":[0.006174541,0.001372573,0.1263523,0.0001565678,0.0001158191,0.002741097,0.0006046875,0.00002371218,0.7740749,0.00004691859,0.08764528,0.0006916254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9796543,0.006265334,0.0001741209,0.0001873492,0.01206882,0.000700475,0.00000968322,0.000138318,0.000801651],"genre_scores_gemma":[0.9975017,0.0001606226,0.00003396886,0.0002794292,0.00009729074,0.000087823,0.0003905772,0.00004650203,0.001402097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2018401,"threshold_uncertainty_score":0.9999768,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2172154693","doi":"10.1111/j.1574-695x.2009.00541.x","title":"Effect of<i>Escherichia coli</i>STb toxin on NIH-3T3 cells","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal","keywords":"Propidium iodide; Biology; Cytoplasm; Population; Confocal microscopy; Flow cytometry; Cholera toxin; 3T3 cells; Cell; Cell biology; Fluorescence microscope; Organelle; Mitochondrion; Molecular biology; Fibroblast; Fluorescein isothiocyanate; Cell culture; Biochemistry; Programmed cell death; Apoptosis; Fluorescence; Microbiology","authors":[{"name":"Carina Gonçalves","is_ca":true},{"name":"J. Daniel Dubreuil","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003661051457275263,"gpt":0.2471932894227659,"spread":0.2435322379654906,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007569778,0.0003869056,0.0007145088,0.0001099802,0.0001133586,0.000006152172,0.0006517234,0.001369568,0.0003231711],"category_scores_gemma":[0.0002818726,0.0003179248,0.000231581,0.0001563184,0.0006506444,0.000002782178,0.0001567635,0.0006436216,0.0002326171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003661728,"about_ca_system_score_gemma":0.0002593329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003911412,"about_ca_topic_score_gemma":0.00001752337,"domain_scores_codex":[0.9971592,0.0007188554,0.0005858262,0.0006735177,0.00008292715,0.000779686],"domain_scores_gemma":[0.9987488,0.0001471959,0.0002200731,0.0006399969,0.00006828227,0.0001756733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008669852,0.000224543,0.0001209927,0.00002920563,0.0001247886,0.00001831475,0.00003543931,0.000001615037,0.9777026,0.0001251377,0.0117305,0.009019941],"study_design_scores_gemma":[0.002070894,0.009659018,0.001695149,0.00005012865,0.00003241102,0.0001384487,0.00001089245,0.000001661993,0.8789023,0.00002216558,0.1071532,0.0002637847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931788,0.002644353,0.0001075494,0.001399376,0.001138134,0.0003976332,0.00005377358,0.00003753999,0.00104279],"genre_scores_gemma":[0.9918487,0.0008846456,0.0001587092,0.005763214,0.000278003,0.00001648526,0.0003544662,0.00002962674,0.0006661454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09880031,"threshold_uncertainty_score":0.9999273,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071909895","doi":"10.1111/j.1574-695x.2000.tb01406.x","title":"Characterization and purification of porcine small intestinal mucus receptor for<i>Escherichia coli</i>K88ac fimbrial adhesin","year":2000,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Bacterial adhesin; Mucus; Escherichia coli; Mucin; Pronase; Biology; Gel electrophoresis; Biochemistry; Fimbria; Glycoprotein; Receptor; Enterotoxigenic Escherichia coli; Microbiology; Sodium; Sodium dodecyl sulfate; Trypsin; Molecular biology; Chemistry; Enzyme; Enterotoxin","authors":[{"name":"L.Z Jin","is_ca":true},{"name":"Ronald R. Marquardt","is_ca":true},{"name":"S. K. Baidoo","is_ca":true},{"name":"A. A. Frohlich","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01798227834416507,"gpt":0.2684898191021425,"spread":0.2505075407579774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004051586,0.0001941047,0.0005570388,0.0001124279,0.00009263088,0.000005304741,0.0001876982,0.0004758761,0.002706963],"category_scores_gemma":[0.0005051537,0.0001569615,0.00009326251,0.000155049,0.0009341949,0.00002996136,0.00006523197,0.0004223118,0.00007489678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003118375,"about_ca_system_score_gemma":0.0002392105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001495948,"about_ca_topic_score_gemma":0.00001928075,"domain_scores_codex":[0.9983825,0.0001805343,0.0005584317,0.0003780191,0.00008882671,0.0004116671],"domain_scores_gemma":[0.9990289,0.0003000898,0.0001399566,0.0002038939,0.0001771341,0.000150068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003228114,0.000210183,0.001828296,0.00008709524,0.0001266986,0.00000724573,0.0001136098,4.311899e-8,0.9145938,0.0002898145,0.0008780567,0.07863708],"study_design_scores_gemma":[0.006484237,0.004512688,0.07798846,0.0003369534,0.0001348126,0.001185561,0.00006128017,0.0001598371,0.2731605,0.0001230038,0.6354841,0.0003685331],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893576,0.001024427,0.0003970067,0.007766897,0.0005453918,0.0005562336,0.0001147444,0.00003761601,0.0002001009],"genre_scores_gemma":[0.9679721,0.004770816,0.005076635,0.002698354,0.001824978,0.000174933,0.00551729,0.00006230833,0.01190261],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6414332,"threshold_uncertainty_score":0.9982047,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091561373","doi":"10.1111/j.1574-695x.2007.00280.x","title":"A comparison of immunogenicity and protective immunity against experimental plague by intranasal and/or combined with oral immunization of mice with attenuated<i>Salmonella</i>serovar Typhimurium expressing secreted<i>Yersinia pestis</i>F1 and V antigen","year":2007,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Defence Medical Centre","funders":"","keywords":"Immunogenicity; Yersinia pestis; Biology; Immunization; Salmonella; Microbiology; Antigen; Antibody; Nasal administration; Virology; Immunoglobulin G; Immunity; Immunology; Immune system; Bacteria; Virulence","authors":[{"name":"Wen-Tssann Liu","is_ca":true},{"name":"H. F. Hsü","is_ca":false},{"name":"Chung-Chih Liang","is_ca":false},{"name":"Chuan-Chang Chuang","is_ca":false},{"name":"Huang-Chi Lin","is_ca":false},{"name":"Yu‐Tien Liu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009941960337603814,"gpt":0.2824462888403529,"spread":0.2725043285027491,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0006104389,0.0003667962,0.0007726418,0.0001460853,0.0002004238,0.00001552842,0.0003215717,0.0007011188,0.00001852634],"category_scores_gemma":[0.0001631572,0.0002912974,0.00003841036,0.0002305436,0.003114005,0.00002139804,0.0004049347,0.0006121577,6.226026e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003566201,"about_ca_system_score_gemma":0.0002110833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005835794,"about_ca_topic_score_gemma":0.0002552109,"domain_scores_codex":[0.9976359,0.0004904228,0.0006021591,0.000574953,0.000137689,0.000558881],"domain_scores_gemma":[0.9986935,0.0001900625,0.0003770152,0.0003579796,0.0002355469,0.0001458679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.01132399,0.0003534545,0.04598654,0.0000602078,0.0004869575,0.0000168833,0.0008186899,0.000001914084,0.940153,0.00000350932,0.00004169521,0.0007531872],"study_design_scores_gemma":[0.004578725,0.006249991,0.04174672,0.0001516023,0.00004585467,0.0005554679,0.001448804,0.00005354302,0.9446601,0.000001680192,0.0001903126,0.0003171915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919339,0.006069184,0.001069189,0.00009666936,0.00006563635,0.0006352593,0.00008682384,0.00001923486,0.00002403417],"genre_scores_gemma":[0.9978593,0.0004725655,0.0008520905,0.00007573634,0.00001979494,0.00001341006,0.0006541354,0.00003973563,0.00001322875],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00674526,"threshold_uncertainty_score":0.9999539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069262171","doi":"10.1111/j.1574-695x.2009.00634.x","title":"Characterization of nontypeable<i>Haemophilus influenzae</i>collected from respiratory infections and invasive disease cases in Manitoba, Canada","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Shared Health; Health Sciences Centre; Manitoba Health; University of Saskatchewan; Public Health Agency of Canada","funders":"Health Canada; Imperial College London; Wellcome Trust","keywords":"Haemophilus influenzae; Biology; Multilocus sequence typing; Serotype; Microbiology; Amp resistance; Ampicillin; Pasteurellaceae; Respiratory tract infections; Haemophilus; Respiratory tract; Respiratory disease; Virology; Genotype; Respiratory system; Antibiotics; Bacteria; Gene; Genetics; Medicine; Internal medicine; Lung","authors":[{"name":"Michelle Shuel","is_ca":true},{"name":"Dennis K. S. Law","is_ca":true},{"name":"Stuart Skinner","is_ca":true},{"name":"John Wylie","is_ca":true},{"name":"James A. Karlowsky","is_ca":true},{"name":"Raymond S. W. Tsang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01231139483408302,"gpt":0.2188409270696348,"spread":0.2065295322355518,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001659368,0.0002818972,0.0006260048,0.0002817802,0.0001870561,0.000008124703,0.0002359377,0.0006808288,0.0007814291],"category_scores_gemma":[0.0009252991,0.0002637602,0.00005981658,0.00034848,0.0004566636,0.00009824711,0.0001237046,0.000566364,0.0000269409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001398166,"about_ca_system_score_gemma":0.001085947,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.2197096,"about_ca_topic_score_gemma":0.5777168,"domain_scores_codex":[0.9978229,0.0005284024,0.0007190443,0.0004543201,0.00002096549,0.000454408],"domain_scores_gemma":[0.9987049,0.0004961711,0.0002628749,0.0003249677,0.0001368977,0.00007426091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003412399,0.0002669711,0.03787221,0.000009292869,0.0001582989,0.00004983073,0.00008093162,9.561955e-7,0.9583494,0.0001254473,0.0005582849,0.002187108],"study_design_scores_gemma":[0.002890883,0.0006465339,0.8983743,0.0001356123,0.00007120177,0.0003038044,0.00008660373,8.77218e-7,0.06429347,0.0001530727,0.03271652,0.000327115],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936392,0.003087316,0.0000127568,0.0008223067,0.001655248,0.0003433785,0.0003465777,0.00004724966,0.00004595022],"genre_scores_gemma":[0.9971486,0.0005029194,0.000006114269,0.001285424,0.00008434986,0.00003462822,0.0008492983,0.00001438495,0.00007423494],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.894056,"threshold_uncertainty_score":0.9999815,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}