{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":318,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":318,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"c6d89df0111c","filters":{"venue":"Frontiers in Cellular and Infection Microbiology"}},"results":[{"id":"W2751799791","doi":"10.3389/fcimb.2017.00387","title":"Interactions of Intestinal Bacteria with Components of the Intestinal Mucus","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":466,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada","keywords":"Mucus; Mucin; Microbiology; Biology; Bacteria; Commensalism; Biofilm; Pathogenic bacteria; Ecology; Biochemistry; Genetics","authors":[{"name":"Jean-Félix Sicard","is_ca":true},{"name":"Guillaume Le Bihan","is_ca":true},{"name":"Philippe Vogeleer","is_ca":true},{"name":"Mario Jacques","is_ca":true},{"name":"Josée Harel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03075660655836183,"gpt":0.2963177359192779,"spread":0.2655611293609161,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001869369,0.0002678447,0.0008600173,0.000168,0.00009646081,0.00001025918,0.0002467617,0.0002895317,0.00001157877],"category_scores_gemma":[0.00005691602,0.0001820716,0.0002006608,0.00009442405,0.000504562,0.000005321683,0.0001959266,0.000355593,0.000001188486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003786998,"about_ca_system_score_gemma":0.0001897087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001679588,"about_ca_topic_score_gemma":0.0001110155,"domain_scores_codex":[0.9986434,0.000256075,0.0005251559,0.0003472387,0.00002505897,0.0002030903],"domain_scores_gemma":[0.9986656,0.00001772414,0.000769462,0.0004255081,0.00008504784,0.00003671204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002364175,0.0004840625,0.03094635,0.01108579,0.0005710329,0.000005969684,0.00008995872,0.000003259144,0.7682726,0.00002833192,0.004302862,0.1839734],"study_design_scores_gemma":[0.0004352753,0.0003372191,0.00104966,0.00339856,0.0001919581,0.0005144461,0.00001015107,0.000002010744,0.005154243,0.000006246648,0.9886873,0.0002128946],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05690096,0.9379258,0.001822741,0.00001782681,0.002131579,0.0007719276,0.0001386183,0.000006587954,0.0002839847],"genre_scores_gemma":[0.01786503,0.979169,0.001678872,0.00001768726,0.0001162266,0.00002469157,0.0007222531,0.00003653779,0.0003697504],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9843845,"threshold_uncertainty_score":0.7424664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969504421","doi":"10.3389/fcimb.2013.00090","title":"Iron, copper, zinc, and manganese transport and regulation in pathogenic Enterobacteria: correlations between strains, site of infection and the relative importance of the different metal transport systems for virulence","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":368,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Armand-Frappier Foundation","keywords":"Virulence; Biology; Bacteria; Siderophore; Zinc; Microbiology; Metalloprotein; Escherichia coli; Homeostasis; Iron homeostasis; Host (biology); Biochemistry; Enzyme; Cell biology; Metabolism; Chemistry; Genetics; Gene","authors":[{"name":"Gaëlle Porcheron","is_ca":true},{"name":"Amélie Garénaux","is_ca":true},{"name":"Julie Proulx","is_ca":true},{"name":"Mourad Sabri","is_ca":true},{"name":"Charles M. Dozois","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01740907159165839,"gpt":0.2598733174373822,"spread":0.2424642458457238,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007925595,0.0003143795,0.00124865,0.0002428378,0.0001415235,0.000009260524,0.00005488124,0.0004507124,0.000002413308],"category_scores_gemma":[0.00003075179,0.0002090386,0.0001486367,0.000179427,0.00056091,0.0001621566,0.00002215459,0.0004430596,7.956263e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001095161,"about_ca_system_score_gemma":0.00003102448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004714163,"about_ca_topic_score_gemma":0.0005291204,"domain_scores_codex":[0.9974315,0.0007664172,0.001110136,0.0004210395,0.00005519432,0.0002156767],"domain_scores_gemma":[0.9986662,0.0002227348,0.0008356693,0.0001946513,0.00004480594,0.00003597769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001059229,0.00007187655,0.9717516,0.008607798,0.0001696989,3.507206e-7,0.001211189,0.00001293868,0.001273114,0.0001617281,0.00002521232,0.0166086],"study_design_scores_gemma":[0.006109626,0.000656387,0.9557011,0.006077752,0.00287407,0.0001134305,0.0001626058,0.0002733909,0.0001637698,0.0004796516,0.02671986,0.0006684191],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5920444,0.4018798,0.002317993,0.00001862788,0.0008782601,0.002524145,0.0003268264,0.000007124841,0.000002813186],"genre_scores_gemma":[0.5011709,0.4980912,0.00009461384,0.000004711768,0.00003753069,0.0001368238,0.0004201955,0.00002283519,0.00002120352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09621133,"threshold_uncertainty_score":0.8524346,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043819612","doi":"10.3389/fcimb.2012.00083","title":"The early interaction of Leishmania with macrophages and dendritic cells and its influence on the host immune response","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":366,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Manitoba Health Research Council","keywords":"Immune system; Leishmania; Host (biology); Macrophage; Biology; Immunology; Host response; Microbiology; Cell biology; In vitro; Parasite hosting; Genetics; Computer science","authors":[{"name":"Dong Liu","is_ca":true},{"name":"Jude E. Uzonna","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02124780384664993,"gpt":0.2843894691258695,"spread":0.2631416652792196,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009978669,0.000290343,0.0008912769,0.0002758372,0.0002359506,0.00004032528,0.00008397622,0.0002353923,0.000006210625],"category_scores_gemma":[0.0001979616,0.0001510391,0.00007966968,0.0002064652,0.0006586115,0.00009012687,0.0001262618,0.0007096872,0.000005590585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009107459,"about_ca_system_score_gemma":0.00005948256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006685581,"about_ca_topic_score_gemma":0.00001305538,"domain_scores_codex":[0.997988,0.0008852862,0.0004244396,0.0003219115,0.00007001239,0.0003103468],"domain_scores_gemma":[0.9986022,0.0007323327,0.0002592337,0.0002481002,0.0001012811,0.00005683674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.009147419,0.0008383034,0.03535424,0.03268825,0.004614042,0.0002142459,0.003541906,0.000002571539,0.3402032,0.0004513326,0.002380422,0.5705641],"study_design_scores_gemma":[0.001330184,0.002372894,0.01858423,0.006337014,0.0009199644,0.0009058948,0.0003679477,0.000005564208,0.008607849,0.0000117562,0.9601398,0.0004169538],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.3247536,0.6741091,0.00001514554,0.00008802687,0.0002650774,0.0007160704,0.00001396311,0.000007043781,0.00003201764],"genre_scores_gemma":[0.1122094,0.8872765,0.00002949362,0.00002300696,0.00004042419,0.00006505343,0.000008357739,0.00002472348,0.0003230028],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9577593,"threshold_uncertainty_score":0.6159194,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014138367","doi":"10.3389/fcimb.2013.00080","title":"Shared and distinct mechanisms of iron acquisition by bacterial and fungal pathogens of humans","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":302,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Siderophore; Biology; Enterobactin; Ferrous; Context (archaeology); Microbiology; Transferrin; Pathogenic bacteria; Bacteria; Virulence; Heme; Ferritin; Biochemistry; Chemistry; Gene; Genetics; Enzyme","authors":[{"name":"Mélissa Caza","is_ca":true},{"name":"James W. Kronstad","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01423476816662135,"gpt":0.2625658077055937,"spread":0.2483310395389724,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003296172,0.0003042963,0.001211738,0.000284372,0.00007626943,0.00001713465,0.00006394221,0.0005645249,0.00006518354],"category_scores_gemma":[0.00002213436,0.0002852674,0.00008789451,0.000101409,0.0002276817,0.00008658026,0.00007236151,0.0002650413,9.895062e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009809453,"about_ca_system_score_gemma":0.00002534892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001653519,"about_ca_topic_score_gemma":0.00001889762,"domain_scores_codex":[0.9980528,0.0004654484,0.0007428113,0.0004508702,0.00003792324,0.0002501982],"domain_scores_gemma":[0.9991202,0.00005939345,0.0005605052,0.0001700154,0.00003488594,0.00005502037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001850905,0.0003739433,0.006538087,0.03461238,0.0002117719,0.000003515661,0.0004075007,3.27795e-7,0.2403829,0.0001021527,0.008699336,0.708483],"study_design_scores_gemma":[0.005115294,0.004516324,0.001909123,0.008655817,0.002151074,0.0003016606,0.0001884748,0.0000405767,0.01600968,0.001497535,0.9577778,0.001836625],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05504346,0.9358693,0.003805732,0.000009308835,0.003123137,0.001095447,0.00101362,0.00001896048,0.00002100673],"genre_scores_gemma":[0.01130995,0.9836692,0.002748701,0.00001587699,0.0001192401,0.0000527552,0.001993771,0.00005334189,0.00003715089],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9490785,"threshold_uncertainty_score":0.9999599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2023142724","doi":"10.3389/fcimb.2013.00003","title":"Recognition of lipid A variants by the TLR4-MD-2 receptor complex","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":271,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lipid A; TLR4; Biology; Receptor; Lipopolysaccharide; Innate immune system; Immune system; Pattern recognition receptor; Toll-like receptor; Signal transduction; Cell biology; Immunology; Biochemistry","authors":[{"name":"Nina Maeshima","is_ca":true},{"name":"Rachel C. Fernandez","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02565766528270469,"gpt":0.2467829942720737,"spread":0.221125328989369,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006200508,0.0004176783,0.001401897,0.0004166834,0.0001709695,0.00002001562,0.0002177572,0.001173232,0.0009043331],"category_scores_gemma":[0.00009059127,0.0002984221,0.0002904103,0.0003028593,0.0004873689,0.0001172116,0.0001060981,0.0007028488,0.000432592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001005112,"about_ca_system_score_gemma":0.00009342571,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001770263,"about_ca_topic_score_gemma":0.000003816,"domain_scores_codex":[0.996492,0.001686024,0.0009813047,0.00043995,0.00001819274,0.0003824921],"domain_scores_gemma":[0.9987067,0.0001930227,0.0006760184,0.0003240138,0.00008301836,0.00001722097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005042907,0.00009888399,0.00003655871,0.001178402,0.000375772,4.37729e-7,0.00009410498,1.004734e-7,0.1449724,0.00001336843,0.2046543,0.6485252],"study_design_scores_gemma":[0.0006497957,0.0001729274,0.000006428817,0.0008160365,0.0002184456,0.000137304,0.00003642438,0.000001224659,0.008237067,0.00003417667,0.9893839,0.0003062324],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001640056,0.992441,0.001121784,0.00003149013,0.003138816,0.001099094,0.0001852675,0.00003185804,0.0003106164],"genre_scores_gemma":[0.0001219806,0.9929417,0.000150753,0.0000393894,0.0000690689,0.0001420678,0.00549555,0.00003468536,0.001004856],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7847297,"threshold_uncertainty_score":0.9999468,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2939306314","doi":"10.3389/fcimb.2019.00112","title":"Dysbiosis of the Gut Microbiome in Lung Cancer","year":2019,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":244,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Dysbiosis; Microbiome; Actinobacteria; Bifidobacterium; Biology; Gut flora; Lung cancer; Phylum; Cancer; Pathogenesis; Colorectal cancer; Immunology; Microbiology; Medicine; Internal medicine; Bacteria; 16S ribosomal RNA; Bioinformatics; Genetics; Lactobacillus","authors":[{"name":"He Zhuang","is_ca":false},{"name":"Liang Cheng","is_ca":false},{"name":"Yao Wang","is_ca":false},{"name":"Yukun Zhang","is_ca":false},{"name":"Man-Fei Zhao","is_ca":false},{"name":"Gong-Da Liang","is_ca":false},{"name":"Meng‐Chun Zhang","is_ca":false},{"name":"Yongguo Li","is_ca":false},{"name":"Jingbo Zhao","is_ca":false},{"name":"Yina Gao","is_ca":false},{"name":"Yujie Zhou","is_ca":false},{"name":"Shu‐Lin Liu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003027655606747606,"gpt":0.2200335907183448,"spread":0.2170059351115972,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001788755,0.0001287012,0.0002253689,0.0001371448,0.0000328688,0.000005048869,0.0001088976,0.0002635141,0.0000361956],"category_scores_gemma":[0.000008780744,0.0001057302,0.00007041309,0.0001960546,0.0001211633,0.00000444762,0.0001013861,0.0001527851,0.000002158197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005000027,"about_ca_system_score_gemma":0.00007182275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004138843,"about_ca_topic_score_gemma":0.0003193891,"domain_scores_codex":[0.9990542,0.000123488,0.0002629645,0.000301106,0.00001678524,0.0002414542],"domain_scores_gemma":[0.999628,0.000004789801,0.0001013602,0.0002148809,0.00002796708,0.0000230037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002186574,0.00002851603,0.4285214,0.0000566104,0.00001319505,1.518292e-7,0.00003782625,0.00002015648,0.5690899,0.0000061297,0.002075574,0.0001286958],"study_design_scores_gemma":[0.002086091,0.0001679706,0.1986267,0.0001096325,0.00002224602,0.00002640206,0.00006829305,0.00008714011,0.7372174,0.00002903846,0.06126003,0.0002990112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935533,0.00416305,0.0002369019,0.0001373189,0.001377369,0.0003310928,0.00003188496,0.000003224511,0.0001658302],"genre_scores_gemma":[0.9975016,0.001417295,0.0001806377,0.0002510312,0.00003887925,0.00001070606,0.00005415591,0.00001215684,0.0005336149],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2298946,"threshold_uncertainty_score":0.4311551,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057376327","doi":"10.3389/fcimb.2013.00057","title":"Host specialization in ticks and transmission of tick-borne diseases: a review","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":228,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"Institut Polaire Français Paul Emile Victor; Agence Nationale de la Recherche","keywords":"Tick; Host (biology); Biology; Transmission (telecommunications); Tick-borne disease; Parasite hosting; Front (military); Zoology; Virology; Ecology; Geography; Computer science","authors":[{"name":"Karen D. McCoy","is_ca":true},{"name":"Elsa Léger","is_ca":false},{"name":"Muriel Dietrich","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01132139212165127,"gpt":0.2514182498639643,"spread":0.240096857742313,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002876705,0.0005030039,0.00222638,0.0007625166,0.0000695249,0.00001354631,0.0001314737,0.0008810752,0.0003882895],"category_scores_gemma":[0.0001199648,0.000436167,0.0002606289,0.0004939055,0.0004485466,0.0001164656,0.00008769837,0.0005083471,0.00003911311],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001423184,"about_ca_system_score_gemma":0.0001584268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002461653,"about_ca_topic_score_gemma":0.00002571497,"domain_scores_codex":[0.9968333,0.001011963,0.001079129,0.0006706859,0.00001916242,0.0003857346],"domain_scores_gemma":[0.9990053,0.0001183688,0.0004750736,0.0002856532,0.00006354792,0.00005206055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005449748,0.0007271919,0.01094022,0.05969557,0.0005290714,0.00001415842,0.0001312459,9.985141e-7,0.004403697,0.0001406072,0.01671019,0.9066526],"study_design_scores_gemma":[0.0009575117,0.0001873909,0.0005214209,0.01449635,0.0008688824,0.0001515087,0.00001108254,0.000001968744,0.0001427704,0.00005416153,0.9821608,0.0004461534],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005480322,0.9952511,0.001104926,0.0000199425,0.00116574,0.001618361,0.0001325831,0.0000356551,0.0001237008],"genre_scores_gemma":[0.000482899,0.9977224,0.00006375645,0.00005886124,0.00004151459,0.000139444,0.001244087,0.00004389173,0.0002031325],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9654506,"threshold_uncertainty_score":0.999809,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2617955321","doi":"10.3389/fcimb.2017.00191","title":"Diversity and Versatility of Phagocytosis: Roles in Innate Immunity, Tissue Remodeling, and Homeostasis","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":219,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; St. Michael's Hospital; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Phagocytosis; Biology; Innate immune system; Cell biology; Acquired immune system; Homeostasis; Immunity; Immunology; Macrophage; Immune system; Genetics","authors":[{"name":"Justin J. Lim","is_ca":true},{"name":"Sergio Grinstein","is_ca":true},{"name":"Ziv Roth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04288270568945438,"gpt":0.2922238514730323,"spread":0.2493411457835779,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000790861,0.0003905226,0.001803876,0.0006903733,0.0006386429,0.0000154853,0.0001873133,0.001039538,0.00001484549],"category_scores_gemma":[0.00007798159,0.0003686889,0.0001240088,0.000141877,0.0007517971,0.0001844347,0.001310565,0.0006289084,0.000002146501],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001078735,"about_ca_system_score_gemma":0.00005693774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001385217,"about_ca_topic_score_gemma":0.0001659738,"domain_scores_codex":[0.9976333,0.0007822103,0.0007057821,0.0005399349,0.00001819859,0.0003206231],"domain_scores_gemma":[0.9989272,0.0000777114,0.0005599353,0.0003680038,0.00004269205,0.00002448306],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008353542,0.0001331254,0.0240303,0.002477082,0.0002426366,0.000002784402,0.0009008761,9.101179e-7,0.005470139,0.00001749123,0.0001315052,0.9665096],"study_design_scores_gemma":[0.002953733,0.000343454,0.007080685,0.003276344,0.0006475938,0.000188459,0.0001482025,0.00002051976,0.004266241,0.0002695865,0.9800617,0.0007434604],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1507547,0.8478684,0.0001554725,0.000008137948,0.000650424,0.0004390962,0.00007249375,0.0000130628,0.00003820697],"genre_scores_gemma":[0.1651946,0.8343608,0.00005475456,0.000005727207,0.00001090885,0.00001155867,0.0002818269,0.00001561572,0.00006413386],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9799302,"threshold_uncertainty_score":0.9998765,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2771040219","doi":"10.3389/fcimb.2017.00477","title":"From Many Hosts, One Accidental Pathogen: The Diverse Protozoan Hosts of Legionella","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Legionella; Legionella pneumophila; Biology; Pathogen; Protozoa; Microbiology; Human pathogen; Bacteria; Genetics","authors":[{"name":"David K. Boamah","is_ca":false},{"name":"Guangqi Zhou","is_ca":true},{"name":"Alexander W. Ensminger","is_ca":true},{"name":"Tamara J. O’Connor","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03406110324439757,"gpt":0.3047627890289044,"spread":0.2707016857845068,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003875188,0.0003714887,0.0009778052,0.0001908101,0.000212857,0.00004652229,0.0004669789,0.0008096181,0.00001757012],"category_scores_gemma":[0.00005653358,0.0002788105,0.0003704768,0.0001009595,0.0005731639,0.000009621131,0.0004898501,0.0004702345,0.00001311489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000554875,"about_ca_system_score_gemma":0.0001827103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005199603,"about_ca_topic_score_gemma":0.00006334712,"domain_scores_codex":[0.9979942,0.0004092095,0.0005027707,0.0006570788,0.00007316693,0.0003636101],"domain_scores_gemma":[0.9987055,0.00002272295,0.0004524492,0.0006859163,0.0000631623,0.000070225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002439668,0.0005442765,0.0151751,0.003896467,0.001488101,0.00006981991,0.0002453973,0.000001532273,0.1786903,0.00004219538,0.03020021,0.7694026],"study_design_scores_gemma":[0.0005862971,0.0001896977,0.0001025798,0.0006018918,0.0001831222,0.0000552753,0.00004920262,0.00000258113,0.005328163,0.00004523064,0.9925321,0.0003238188],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01428829,0.9819198,0.0006486179,0.00002662696,0.001247352,0.001413128,0.000247303,0.000007467081,0.0002013733],"genre_scores_gemma":[0.00719494,0.989609,0.0001176396,0.00002390315,0.0005498856,0.0001159105,0.001680244,0.00004020021,0.0006682863],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.962332,"threshold_uncertainty_score":0.9999664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2081972406","doi":"10.3389/fcimb.2012.00072","title":"Impact of Leishmania metalloprotease GP63 on macrophage signaling","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":191,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Leishmania; Innate immune system; Virulence; Biology; Cell biology; Virulence factor; Leishmania major; Macrophage; Signal transduction; Metalloproteinase; Transcription factor; Microbiology; Immune system; Immunology; Matrix metalloproteinase; Genetics; In vitro; Gene; Parasite hosting","authors":[{"name":"Amandine Isnard","is_ca":true},{"name":"Marina Tiemi Shio","is_ca":true},{"name":"Martin Olivier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04180496476233272,"gpt":0.334643400922281,"spread":0.2928384361599483,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000669841,0.000489803,0.002517966,0.0009725838,0.00007411388,0.00001309895,0.0001007129,0.0005921439,0.0001585724],"category_scores_gemma":[0.0001342884,0.000355511,0.0007754476,0.0003948226,0.000256002,0.00006745748,0.000115026,0.0008950569,0.00002990338],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004678146,"about_ca_system_score_gemma":0.0002134011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001830401,"about_ca_topic_score_gemma":0.000003752398,"domain_scores_codex":[0.9976327,0.0005136228,0.0007291182,0.0004968198,0.00008970263,0.0005380613],"domain_scores_gemma":[0.9989462,0.00009405636,0.0003625466,0.0003510297,0.00009070823,0.0001554024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003326425,0.001226736,0.03846103,0.02688239,0.004248967,0.0001545211,0.0001651768,0.000005191461,0.01397089,0.0000298243,0.004744876,0.9097778],"study_design_scores_gemma":[0.001484389,0.001703846,0.0008850975,0.004208111,0.001699237,0.0003853768,0.00001660288,0.000004578395,0.001025455,0.00002021708,0.988036,0.0005310331],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01171836,0.985469,0.0003870251,0.000006195104,0.000639235,0.001290138,0.00006989673,0.00002598736,0.0003941391],"genre_scores_gemma":[0.006198554,0.9922106,0.0004950716,0.00001337246,0.0002005971,0.0000795884,0.0003504324,0.00005996488,0.0003917791],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9832912,"threshold_uncertainty_score":0.9998897,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995192717","doi":"10.3389/fcimb.2012.00052","title":"Staphylococcal superantigens in colonization and disease","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":182,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Superantigen; Colonization; Microbiology; Biology; Bacteria; Virology; Immunology; Staphylococcus aureus; Genetics","authors":[{"name":"Stacey X. Xu","is_ca":true},{"name":"John K. McCormick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01969033370641999,"gpt":0.2752270885482423,"spread":0.2555367548418223,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002961191,0.0003902298,0.001499901,0.0007520014,0.00006256813,0.0000197232,0.00005109931,0.0006143731,0.00003442572],"category_scores_gemma":[0.00008494635,0.0003570114,0.0001596611,0.0004341366,0.0003303695,0.0000827969,0.00007098478,0.0005728425,0.000009408621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002329178,"about_ca_system_score_gemma":0.0002260695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005490319,"about_ca_topic_score_gemma":0.00004474358,"domain_scores_codex":[0.9981037,0.0002786189,0.0006045157,0.0005318702,0.00003948231,0.0004418526],"domain_scores_gemma":[0.9993201,0.00004982376,0.0001571546,0.0002158017,0.00004007549,0.0002170589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003900504,0.0007402077,0.396587,0.03307872,0.0003015175,0.0003078874,0.0002984375,0.000002331119,0.002387372,0.0001751302,0.004725318,0.5610061],"study_design_scores_gemma":[0.0009166228,0.00007912168,0.002663183,0.002609551,0.0004828601,0.0001083507,0.0000136253,0.00001143865,0.00002184659,0.0000318189,0.9926988,0.0003628022],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01344655,0.9824547,0.001734203,0.00002850334,0.0009418656,0.001223572,0.00007603302,0.00002624651,0.00006829831],"genre_scores_gemma":[0.005045927,0.993377,0.0004747285,0.00007130058,0.0001358303,0.00005466183,0.0006163772,0.00004932126,0.0001748646],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9879735,"threshold_uncertainty_score":0.9998882,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972946389","doi":"10.3389/fcimb.2013.00046","title":"Changing geographic ranges of ticks and tick-borne pathogens: drivers, mechanisms and consequences for pathogen diversity","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":181,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe; Public Health Agency of Canada","funders":"","keywords":"Tick; Biology; Biological dispersal; Tick-borne disease; Ecology; Lyme disease; Range (aeronautics); Ixodes; Ixodes scapularis; Population; Phylogeography; Ixodidae; Zoology; Virology; Phylogenetics; Environmental health; Genetics","authors":[{"name":"Nicholas H. Ogden","is_ca":true},{"name":"Samir Mechai","is_ca":true},{"name":"Gabriele Margos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01567615935693963,"gpt":0.2292514668319892,"spread":0.2135753074750496,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004390998,0.0004750949,0.001586135,0.0009618376,0.0003604882,0.00002034537,0.000125919,0.0009753876,0.00004836699],"category_scores_gemma":[0.00008067204,0.0004275792,0.0002536441,0.0002327734,0.001118009,0.00009647722,0.0003657709,0.0003274519,0.000005405331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005475511,"about_ca_system_score_gemma":0.00006610476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001946935,"about_ca_topic_score_gemma":0.00002670123,"domain_scores_codex":[0.9977788,0.0005174858,0.0005128395,0.0006921485,0.00001661847,0.0004820511],"domain_scores_gemma":[0.9990079,0.0002110561,0.0004379314,0.0002054197,0.00008872613,0.0000489062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001769454,0.0005015536,0.03227617,0.02140788,0.004478473,0.00003329083,0.001385508,0.000001725695,0.1778286,0.00192362,0.002453645,0.7575325],"study_design_scores_gemma":[0.005737171,0.001944116,0.0007562514,0.004033616,0.0062717,0.001456705,0.0009799851,0.00001111917,0.006358565,0.003489406,0.966643,0.00231838],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01520186,0.9769425,0.004205074,0.00001077571,0.001429385,0.001427458,0.000718763,0.0000473118,0.00001683616],"genre_scores_gemma":[0.009281592,0.9891348,0.0005612813,0.00003059811,0.00002940736,0.0001227054,0.0007120364,0.00003240305,0.00009521512],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9641894,"threshold_uncertainty_score":0.9998176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3132617495","doi":"10.3389/fcimb.2020.596166","title":"Viral Infections, the Microbiome, and Probiotics","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lallemand (Canada)","funders":"","keywords":"Microbiome; Immunology; Immunity; Immunosenescence; Biology; Immune system; Viral pathogenesis; Disease; Virology; Virus; Viral replication; Medicine; Bioinformatics","authors":[{"name":"Ashton Harper","is_ca":false},{"name":"Vineetha Vijayakumar","is_ca":false},{"name":"Arthur C. Ouwehand","is_ca":false},{"name":"Jessica ter Haar","is_ca":false},{"name":"David Obis","is_ca":false},{"name":"Jordi Espadaler","is_ca":false},{"name":"Sylvie Binda","is_ca":true},{"name":"Shrilakshmi Desiraju","is_ca":false},{"name":"Richard O. Day","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01100748879250726,"gpt":0.2675172700727678,"spread":0.2565097812802605,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003933756,0.0004564769,0.0009994541,0.0002620308,0.0002462059,0.00006558859,0.0001364383,0.0009797638,0.00001104057],"category_scores_gemma":[0.00004067623,0.0003518229,0.0002437482,0.0002684233,0.0004023902,0.000006327158,0.0002819356,0.0005820057,0.000005834068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006842608,"about_ca_system_score_gemma":0.0002486116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004781866,"about_ca_topic_score_gemma":0.00006165269,"domain_scores_codex":[0.9976986,0.0005441067,0.0005645806,0.0007396366,0.0000237405,0.000429314],"domain_scores_gemma":[0.9992273,0.00002491253,0.0002391625,0.0003879257,0.00004707301,0.00007361274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004405962,0.0006175873,0.004580283,0.01255368,0.001140261,0.00003108721,0.0001843101,0.000004205774,0.110297,0.0002699989,0.1067931,0.7634844],"study_design_scores_gemma":[0.0003411856,0.0002196097,0.0000201473,0.0005822477,0.00020001,0.0007084198,0.00001918055,0.000001209352,0.0004878277,0.00001207912,0.9970386,0.0003694725],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002288434,0.9941175,0.001027346,0.00004274927,0.001622251,0.0007237411,0.0000893284,0.00001455464,0.00007411218],"genre_scores_gemma":[0.0001550001,0.9967778,0.0004911231,0.0001695921,0.0002606088,0.00004424747,0.00147,0.00004970395,0.0005819355],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8902455,"threshold_uncertainty_score":0.9998934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2969979807","doi":"10.3389/fcimb.2019.00313","title":"Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research","keywords":"Envelope (radar); Biology; Virulence; Cell envelope; Fight-or-flight response; Intracellular; Function (biology); Gram-negative bacteria; Host response; Extracellular; Microbiology; Cell biology; Immunology; Genetics; Immune system; Escherichia coli; Computer science","authors":[{"name":"Claire L. Hews","is_ca":false},{"name":"Timothy H. S. Cho","is_ca":true},{"name":"Gary Rowley","is_ca":false},{"name":"Tracy Raivio","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0249647836609014,"gpt":0.2932447715580552,"spread":0.2682799878971538,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008395449,0.0004005807,0.001237372,0.0005495928,0.00005146339,0.00002076066,0.0001683799,0.0008491132,0.00002051514],"category_scores_gemma":[0.0003049995,0.0003669908,0.0002020953,0.0002874046,0.0003004323,0.00001216741,0.0003065557,0.0004398544,0.000002906138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001847039,"about_ca_system_score_gemma":0.0002773685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001262803,"about_ca_topic_score_gemma":0.0001694442,"domain_scores_codex":[0.9964823,0.001707246,0.0006964266,0.0006823567,0.00005315534,0.0003785358],"domain_scores_gemma":[0.999018,0.0001040409,0.000384748,0.0003496578,0.00009757012,0.00004605851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001950909,0.0004430443,0.04457963,0.01051876,0.001082593,0.00001810831,0.0003897422,0.000086164,0.771974,0.00004799036,0.0008701655,0.1680389],"study_design_scores_gemma":[0.004495704,0.002053741,0.04112898,0.01156516,0.0005461739,0.00009810097,0.001001687,0.00003985621,0.09373463,0.0002484853,0.8427309,0.002356556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.192723,0.8024305,0.00215624,0.0000182491,0.0009499252,0.001075647,0.0005968256,0.000009923277,0.0000396832],"genre_scores_gemma":[0.02451121,0.9724728,0.0009603862,0.00001039394,0.0000874541,0.00007512558,0.001670525,0.00004282571,0.0001692944],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8418608,"threshold_uncertainty_score":0.9998782,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001153614","doi":"10.3389/fcimb.2012.00121","title":"Leishmania promastigotes: building a safe niche within macrophages","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Armand-Frappier Foundation","keywords":"Phagosome; Lipophosphoglycan; Phagolysosome; Leishmania; Cell biology; Internalization; Leishmania donovani; Biology; Macrophage; Leishmania mexicana; Microbiology; Kinetoplastida; NADPH oxidase; Vacuole; Glycolipid; Phagocytosis; Leishmaniasis; Biochemistry; Parasite hosting; Immunology; Reactive oxygen species; Cytoplasm; Visceral leishmaniasis; In vitro","authors":[{"name":"Neda Moradin","is_ca":true},{"name":"Albert Descoteaux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03898259935322573,"gpt":0.3157350010783808,"spread":0.276752401725155,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000889792,0.000599474,0.002471437,0.0007071018,0.0001700182,0.00003971097,0.0001425519,0.000810668,0.00007874551],"category_scores_gemma":[0.0002051212,0.0004758486,0.0003624783,0.0005131317,0.0004449679,0.0001149963,0.0002572868,0.001285454,0.00005674838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004211053,"about_ca_system_score_gemma":0.0002067876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007638498,"about_ca_topic_score_gemma":0.0000159968,"domain_scores_codex":[0.9969943,0.0005459128,0.0008685136,0.0007523951,0.00009773811,0.0007410981],"domain_scores_gemma":[0.9988796,0.0001019988,0.0003645675,0.0003871043,0.00008633167,0.0001803806],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001006717,0.0004905168,0.02324547,0.03741503,0.001642987,0.000192749,0.0003843239,9.492277e-7,0.004577172,0.0001065784,0.01437323,0.9174703],"study_design_scores_gemma":[0.0007405159,0.0002860385,0.0001383342,0.003507857,0.0008563424,0.0008337902,0.00003375222,0.00000882147,0.0003247623,0.00002861549,0.9928277,0.0004134763],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001100647,0.9929308,0.001834924,0.00004413927,0.001975055,0.001558514,0.00002958561,0.00006978893,0.0004565875],"genre_scores_gemma":[0.000338379,0.9919642,0.005631291,0.00005150052,0.0004275528,0.0001764531,0.0002022526,0.00008504637,0.001123334],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9784545,"threshold_uncertainty_score":0.9997693,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4291783598","doi":"10.3389/fcimb.2022.943427","title":"Gut Microbiota Composition in Prediabetes and Newly Diagnosed Type 2 Diabetes: A Systematic Review of Observational Studies","year":2022,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Universiti Sains Islam Malaysia; University of Otago","keywords":"Prediabetes; Type 2 diabetes; Observational study; Gut flora; Diabetes mellitus; Medicine; Composition (language); Biology; Internal medicine; Bioinformatics; Immunology; Endocrinology","authors":[{"name":"Geetha Letchumanan","is_ca":false},{"name":"Natasya Abdullah","is_ca":false},{"name":"Muhamad Marlini","is_ca":false},{"name":"Nizam Baharom","is_ca":false},{"name":"Blair Lawley","is_ca":false},{"name":"Mohd Rahman Omar","is_ca":false},{"name":"Fathima Begum Syed Mohideen","is_ca":false},{"name":"Faizul Helmi Addnan","is_ca":false},{"name":"Zarini Ismail","is_ca":false},{"name":"Siva Gowri Pathmanathan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03653121488751518,"gpt":0.3037210105243032,"spread":0.267189795636788,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006706612,0.0003543447,0.002053157,0.0003172992,0.00006970434,0.000009253121,0.0001243794,0.0003777973,0.00001255776],"category_scores_gemma":[0.0001891703,0.0003237441,0.0001697364,0.0003351845,0.0001876976,0.000006725698,0.0001963575,0.0003049606,8.613183e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001262856,"about_ca_system_score_gemma":0.0001553054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009249757,"about_ca_topic_score_gemma":0.0000158725,"domain_scores_codex":[0.9973342,0.0008064422,0.001010225,0.0005283374,0.00003726304,0.0002834942],"domain_scores_gemma":[0.9990056,0.0001012287,0.0005270964,0.0002561453,0.00007015371,0.00003983759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001059045,0.000132046,0.0027453,0.9631712,0.000379004,0.000003540034,0.00006013302,0.000001086947,0.02522422,0.000007558594,0.003957591,0.004307731],"study_design_scores_gemma":[0.001354649,0.0008370947,0.0003282503,0.3241673,0.001365367,0.00009595549,0.00007142486,0.000004562792,0.0003558934,0.00002923868,0.670471,0.0009193853],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01018038,0.9873685,0.00001886125,0.00002595209,0.0006801237,0.001553853,0.0001588197,0.000006364325,0.000007151046],"genre_scores_gemma":[0.000151547,0.9956713,0.0003822635,0.0002949119,0.0000447383,0.0001786972,0.003207175,0.00002918767,0.00004020611],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6665133,"threshold_uncertainty_score":0.9999214,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005194128","doi":"10.3389/fcimb.2011.00026","title":"Leishmania Exosomes Deliver Preemptive Strikes to Create an Environment Permissive for Early Infection","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Microvesicles; Cell biology; Leishmania; Biology; Effector; Leishmania major; Exosome; Extracellular vesicle; Immune system; Macrophage; Interferon; Cytokine; Secretion; Endosome; Immunology; microRNA; In vitro; Intracellular; Biochemistry","authors":[{"name":"Judith M. Silverman","is_ca":true},{"name":"Neil E. Reiner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01925423338792789,"gpt":0.2661845484098378,"spread":0.2469303150219099,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003200847,0.0005563438,0.00087412,0.00032615,0.0001429081,0.00004100858,0.0001723476,0.0009066431,0.00003067002],"category_scores_gemma":[0.00004165963,0.0005482482,0.0003475652,0.000111296,0.000180166,0.00002536538,0.0001840281,0.0002694486,0.00002294647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001602994,"about_ca_system_score_gemma":0.00007492989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007292484,"about_ca_topic_score_gemma":0.00001921904,"domain_scores_codex":[0.9975362,0.0004275361,0.0005277889,0.0009305395,0.00004885695,0.0005290646],"domain_scores_gemma":[0.9989749,0.00002207961,0.0002784893,0.0004295742,0.00005253281,0.0002424362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000396909,0.001013267,0.02059575,0.004662902,0.001064777,0.00001474787,0.0003749303,0.00007265913,0.08105875,0.00003962258,0.005816792,0.8848889],"study_design_scores_gemma":[0.0005717981,0.0008610551,0.0003658315,0.000236522,0.0005921296,0.00004594454,0.00001575967,0.000006885949,0.00531067,0.00003076019,0.9913014,0.0006612493],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06338712,0.90835,0.02488223,0.000004520471,0.001060999,0.001935694,0.0003028464,0.00002351711,0.00005307507],"genre_scores_gemma":[0.006226436,0.9870182,0.002168291,0.00004859878,0.0005594026,0.0004881685,0.002677256,0.0001062053,0.0007074538],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9854846,"threshold_uncertainty_score":0.9996969,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2128981277","doi":"10.3389/fcimb.2012.00005","title":"Nutrient Acquisition and Metabolism by Campylobacter jejuni","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":139,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Ministry of Economic Affairs","keywords":"Campylobacter jejuni; Nutrient; Microbiology; Campylobacter; Metabolism; Biology; Bacteria; Biochemistry; Ecology; Genetics","authors":[{"name":"Martin Ståhl","is_ca":true},{"name":"James Butcher","is_ca":true},{"name":"Alain Stintzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01801748678711078,"gpt":0.2305838212227462,"spread":0.2125663344356354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004720892,0.0004308597,0.001379587,0.00008450615,0.0001308274,0.00003405121,0.0001177248,0.0009404898,0.0001585369],"category_scores_gemma":[0.0000153132,0.0001909549,0.0002052112,0.0002612556,0.0002064281,0.0001097202,0.0001248517,0.0004053711,0.00002149823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000666558,"about_ca_system_score_gemma":0.000008763774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001841545,"about_ca_topic_score_gemma":0.00002465899,"domain_scores_codex":[0.9975669,0.0007318411,0.0005546306,0.000601241,0.00003266151,0.0005127048],"domain_scores_gemma":[0.9993363,0.0001373335,0.000282713,0.00008404768,0.00002466994,0.0001349554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001415448,0.000159754,0.005558977,0.0005566788,0.0001085465,0.000002883256,0.0000330661,2.302694e-8,0.007501174,0.0000855059,0.008958655,0.9770206],"study_design_scores_gemma":[0.00016308,0.00007741579,0.0007298668,0.0001791383,0.000245956,0.0001223403,0.00001432674,7.393739e-7,0.00005451809,0.0001587242,0.9978913,0.0003625631],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02373169,0.9737619,0.0000958542,0.00004441771,0.001623456,0.0004342291,0.0001862932,0.00003679661,0.00008537703],"genre_scores_gemma":[0.00161253,0.9955555,0.00006997419,0.0001621859,0.0003985431,0.00005481871,0.001975333,0.000004427915,0.0001667106],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9889327,"threshold_uncertainty_score":0.7786914,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977101213","doi":"10.3389/fcimb.2012.00007","title":"Campylobacter Polysaccharide Capsules: Virulence and Vaccines","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"National Medical Research Council; Natural Sciences and Engineering Research Council of Canada; U.S. Navy; U.S. Department of Defense","keywords":"Virulence; Microbiology; Pathogenesis; Campylobacter jejuni; Campylobacter; Biology; Polysaccharide; Virology; Bacteria; Immunology; Gene; Genetics; Biochemistry","authors":[{"name":"Patricia Guerry","is_ca":false},{"name":"Frédéric Poly","is_ca":false},{"name":"Mark S. Riddle","is_ca":false},{"name":"Alexander C. Maue","is_ca":false},{"name":"Yuhan Chen","is_ca":true},{"name":"Mário A. Monteiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02770593227807084,"gpt":0.2444051387770855,"spread":0.2166992064990146,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004686718,0.0004707723,0.001445836,0.0001023997,0.0001328749,0.00003465202,0.0001619919,0.0008853272,0.0001227449],"category_scores_gemma":[0.00003374598,0.0002030513,0.0002057677,0.0002806611,0.0001768805,0.0001212439,0.0001491305,0.0004533725,0.0000282746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006346024,"about_ca_system_score_gemma":0.00001394451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005067542,"about_ca_topic_score_gemma":0.000172405,"domain_scores_codex":[0.9975629,0.0005699893,0.0006121403,0.0006608756,0.00002915324,0.000564925],"domain_scores_gemma":[0.999259,0.0001877596,0.0002936332,0.00009929286,0.00002488283,0.000135464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009628855,0.00005741142,0.03399618,0.0007027574,0.00007692421,0.000005157015,0.0000327266,4.404227e-8,0.007015892,0.00002316289,0.001153929,0.9569262],"study_design_scores_gemma":[0.0001163917,0.00008769671,0.002786575,0.0003570457,0.0002074615,0.0002546621,0.00002233607,0.000001412606,0.00003768695,0.00009125218,0.9956141,0.0004233854],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06335529,0.9346835,0.00004315707,0.00004018922,0.001349808,0.0003690695,0.00006727075,0.00004218577,0.00004954618],"genre_scores_gemma":[0.001876804,0.9968628,0.00009525896,0.0001605579,0.0004633235,0.00004543749,0.0003323222,0.000004697294,0.0001587478],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9944602,"threshold_uncertainty_score":0.8280192,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2950501730","doi":"10.3389/fcimb.2019.00212","title":"The cAMP/Protein Kinase A Pathway Regulates Virulence and Adaptation to Host Conditions in Cryptococcus neoformans","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Biology; Virulence; Protein kinase A; Signal transduction; Cell biology; Nutrient sensing; Saccharomyces cerevisiae; Phenotype; Metabolic pathway; Kinase; Yeast; Microbiology; Gene; Biochemistry","authors":[{"name":"Mélissa Caza","is_ca":true},{"name":"James W. Kronstad","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02165636848761846,"gpt":0.2695391354398648,"spread":0.2478827669522463,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003500777,0.0002918754,0.0009110792,0.0004909582,0.0002362902,0.00003313359,0.00004703585,0.0003454833,0.00001240253],"category_scores_gemma":[0.00009254686,0.0002062689,0.0001228847,0.0003930382,0.0002184234,0.0000673882,0.00007484136,0.0004577857,0.00002479757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001802571,"about_ca_system_score_gemma":0.0001063264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002447129,"about_ca_topic_score_gemma":0.000290492,"domain_scores_codex":[0.9985291,0.0001949101,0.0005354893,0.0004000948,0.00003396685,0.0003064516],"domain_scores_gemma":[0.9994113,0.00009599587,0.0001602627,0.0002144222,0.00005548914,0.00006250782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002408155,0.0005030081,0.01132444,0.01470087,0.0006994796,0.00008215191,0.002031816,0.00004165814,0.01816759,0.001200988,0.008106945,0.9429002],"study_design_scores_gemma":[0.0006113691,0.0004257757,0.0004797763,0.002943018,0.0001508804,0.0001082071,0.0002063099,0.00007102263,0.0001482688,0.00007355138,0.9945166,0.0002652153],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01822283,0.9769565,0.0009141105,0.00008692766,0.001042924,0.002454403,0.00008160382,0.00002611475,0.0002146102],"genre_scores_gemma":[0.003249157,0.9949433,0.0003459906,0.00005716892,0.00006814791,0.0004183227,0.000195292,0.00002418139,0.0006984716],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9864097,"threshold_uncertainty_score":0.8411403,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2758814752","doi":"10.3389/fcimb.2017.00428","title":"Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Prophage; Biology; Salmonella; Pathogenicity island; Host adaptation; Gene; Virulence; Genome; Genetics; Gene silencing; Bacterial genome size; Bacteria; Escherichia coli; Bacteriophage","authors":[{"name":"Bushra Ilyas","is_ca":true},{"name":"Caressa N. Tsai","is_ca":true},{"name":"Brian K. Coombes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03363692993535485,"gpt":0.2807889804193618,"spread":0.247152050484007,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003557491,0.0004240043,0.001743803,0.0001119978,0.0002000822,0.00003146036,0.0002990641,0.0007759745,0.0001560687],"category_scores_gemma":[0.00005193623,0.000209923,0.0004489112,0.0002121623,0.0003125423,0.0001421648,0.0001665296,0.0004824689,0.00002845972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002336779,"about_ca_system_score_gemma":0.00004478312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000918641,"about_ca_topic_score_gemma":0.000368332,"domain_scores_codex":[0.997404,0.0006267714,0.0008621424,0.0006594153,0.00003490726,0.0004127847],"domain_scores_gemma":[0.9986554,0.000162605,0.000884207,0.0001866704,0.00005163773,0.00005949246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001493564,0.000677644,0.006915851,0.004034196,0.0003809287,0.00002433782,0.000166446,0.00000308725,0.3986813,0.00007723257,0.002306403,0.5865833],"study_design_scores_gemma":[0.0001932362,0.0001978557,0.001001417,0.0004442963,0.0001821741,0.00009408648,0.00003074043,0.000006218522,0.0000756642,0.0001450439,0.9972772,0.0003520474],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03180636,0.9627047,0.000361758,0.0000230218,0.003720472,0.0005717895,0.0003106696,0.00003312898,0.0004681241],"genre_scores_gemma":[0.01233571,0.9854113,0.000179035,0.00001240751,0.000307489,0.0000431508,0.001373312,0.000005723222,0.0003318434],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9949708,"threshold_uncertainty_score":0.8560412,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994946132","doi":"10.3389/fcimb.2012.00011","title":"Phase Variable Expression of Capsular Polysaccharide Modifications Allows Campylobacter jejuni to Avoid Bacteriophage Infection in Chickens","year":2012,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Glycomics Centre; The Metabolomics Innovation Centre; University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Campylobacter jejuni; Microbiology; Biology; Bacteriophage; Infectivity; Mutant; Bacteria; Virology; Escherichia coli; Virus; Genetics; Gene","authors":[{"name":"Martine C. Holst Sørensen","is_ca":false},{"name":"Lieke B. van Alphen","is_ca":true},{"name":"Christopher Fodor","is_ca":true},{"name":"Shauna M. Crowley","is_ca":true},{"name":"Bjarke Bak Christensen","is_ca":false},{"name":"Christine M. Szymanski","is_ca":true},{"name":"Lone Brøndsted","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008058901828781722,"gpt":0.2321446648937002,"spread":0.2240857630649185,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002657123,0.0001900911,0.0002878698,0.0002843143,0.0001011293,0.00001764681,0.00008258605,0.000213299,0.0008479948],"category_scores_gemma":[0.00003329839,0.0001923407,0.00006074802,0.0004007672,0.0001159551,0.0004662541,0.0001238969,0.0002598234,0.00006742485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002254252,"about_ca_system_score_gemma":0.00001148561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003685883,"about_ca_topic_score_gemma":0.0003449663,"domain_scores_codex":[0.9986628,0.0001650176,0.000418561,0.0003246735,0.0000354633,0.0003934718],"domain_scores_gemma":[0.9994907,0.00002086339,0.0001319404,0.0002260689,0.00001348754,0.0001169478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003859152,0.0007890484,0.08689488,0.00002047531,0.000008639517,9.295097e-7,0.0005478696,0.00009588643,0.9098234,0.00001267974,0.001199041,0.0005685524],"study_design_scores_gemma":[0.001943159,0.0002855824,0.1764853,0.00008951571,0.00003699882,0.00005340358,0.00007286395,0.000150546,0.7715619,0.00007224461,0.04883605,0.0004124016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9714797,0.0001239844,0.02603294,0.00003925375,0.001398326,0.0003705737,0.00003759825,0.00002130011,0.0004963105],"genre_scores_gemma":[0.9950832,0.0002031106,0.00404963,0.0001317095,0.00005734907,0.00004525984,0.00007368544,0.00001740942,0.0003386891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1382615,"threshold_uncertainty_score":0.9284948,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2945630190","doi":"10.3389/fcimb.2019.00182","title":"Repair Process Impairment by Pseudomonas aeruginosa in Epithelial Tissues: Major Features and Potential Therapeutic Avenues","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Association Vaincre la Mucoviscidose; Université de Montréal","keywords":"Pseudomonas aeruginosa; Respiratory tract; Microbiology; Biology; Immunology; Medicine; Bacteria; Respiratory system","authors":[{"name":"Manon Ruffin","is_ca":true},{"name":"Emmanuelle Brochiero","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006709508958475224,"gpt":0.2459049412837623,"spread":0.2391954323252871,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002308133,0.0003983575,0.000882345,0.0001899159,0.00006261188,0.00003086937,0.00007859005,0.0008854988,0.000006679973],"category_scores_gemma":[0.0000111045,0.0003497857,0.0001822373,0.0001049416,0.0001637281,0.000008168483,0.00009363601,0.0003256183,0.000003180896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004369543,"about_ca_system_score_gemma":0.00007669508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008435917,"about_ca_topic_score_gemma":0.00002404778,"domain_scores_codex":[0.9982078,0.0002948099,0.0004167505,0.0006912837,0.00003303132,0.0003563164],"domain_scores_gemma":[0.9995089,0.000008419095,0.0001959344,0.000212782,0.00002385539,0.00005010578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00025134,0.000278133,0.002661299,0.006541383,0.0004874072,0.0000333653,0.0001612936,0.000002973991,0.6096666,0.000008093122,0.008509492,0.3713986],"study_design_scores_gemma":[0.0008816225,0.0004128264,0.00007492303,0.0006616667,0.0002014367,0.0003257318,0.00002850372,0.000003645859,0.009383115,0.00001123639,0.9875131,0.0005022045],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06575318,0.9318868,0.0001068229,0.00001561167,0.001415629,0.000649475,0.0001359013,0.00001490742,0.00002165106],"genre_scores_gemma":[0.006758207,0.9910803,0.0002259741,0.00006319992,0.0002456635,0.00002733235,0.001234382,0.00004247077,0.0003225087],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9790036,"threshold_uncertainty_score":0.9998954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4390113256","doi":"10.3389/fcimb.2023.1293633","title":"Antibiotic adjuvants: synergistic tool to combat multi-drug resistant pathogens","year":2023,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Amity Institute of Biotechnology, Amity University; Al-Imam Muhammad Ibn Saud Islamic University; Amity University","keywords":"Antibiotics; Efflux; Antibiotic resistance; Microbiology; Drug resistance; Biology","authors":[{"name":"Vikram Kumar","is_ca":false},{"name":"Nusrath Yasmeen","is_ca":false},{"name":"Aishwarya Pandey","is_ca":true},{"name":"Anis Ahmad Chaudhary","is_ca":false},{"name":"Abdullah S. Alawam","is_ca":false},{"name":"Hassan A. Rudayni","is_ca":false},{"name":"Asimul Islam","is_ca":false},{"name":"Sudarshan Singh Lakhawat","is_ca":false},{"name":"Pushpender Kumar Sharma","is_ca":false},{"name":"Mohammad Shahid","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007552112598446687,"gpt":0.226531925197048,"spread":0.2189798125986013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003785808,0.0002575426,0.0003454413,0.0002764854,0.0001290783,0.00003267002,0.0001494502,0.0002762071,0.00001729513],"category_scores_gemma":[0.0001636347,0.0002590001,0.00008833774,0.0003695993,0.0001889569,0.000007949051,0.0001756808,0.0001484765,0.00006006133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005125016,"about_ca_system_score_gemma":0.00004461829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005777193,"about_ca_topic_score_gemma":0.0001159974,"domain_scores_codex":[0.9982423,0.0001840937,0.0003887597,0.0006534834,0.00004529167,0.0004860487],"domain_scores_gemma":[0.9993674,0.00001614474,0.00009377507,0.0003744987,0.00005850286,0.00008963791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001299708,0.00006439725,0.09185957,0.00005262969,0.00004181593,0.00002609647,0.00005353352,0.00006906967,0.8885264,0.00002179001,0.01801107,0.001143654],"study_design_scores_gemma":[0.003260192,0.0007199853,0.2500598,0.0001584824,0.00008289811,0.00006345931,0.0004665182,0.0005626141,0.5849526,0.0001120097,0.1581907,0.001370859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9796423,0.0007528408,0.01681581,0.00007636977,0.00210136,0.0003553283,0.00009925762,0.00005162017,0.0001050899],"genre_scores_gemma":[0.9927246,0.0009480913,0.003799533,0.0002071877,0.0001421594,0.000008957553,0.0005509236,0.00004081364,0.001577737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3035738,"threshold_uncertainty_score":0.9999862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3129104203","doi":"10.3389/fcimb.2020.615049","title":"Survival and Control of Campylobacter in Poultry Production Environment","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":103,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; King Saud University; Genome British Columbia; Genome Canada","keywords":"Campylobacter; Fastidious organism; Biology; Poultry farming; Obligate; Food chain; Poultry meat; Bacteria; Microbiology; Biotechnology; Ecology; Food science; Genetics","authors":[{"name":"Mohammed J. Hakeem","is_ca":true},{"name":"Xiaonan Lu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01883834775413549,"gpt":0.2271505880923909,"spread":0.2083122403382554,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005589501,0.0002715639,0.001456992,0.00008130912,0.00003740114,0.000008947713,0.00007139071,0.0005886251,0.00005344154],"category_scores_gemma":[0.00005741533,0.0001298403,0.0001508437,0.0001962522,0.0001825997,0.00004358168,0.00006557838,0.0003263534,0.000002333207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006745913,"about_ca_system_score_gemma":0.00001426125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002017819,"about_ca_topic_score_gemma":0.00007005278,"domain_scores_codex":[0.9976009,0.0009144917,0.0006130022,0.0005730742,0.00002839261,0.0002701395],"domain_scores_gemma":[0.999454,0.0001505446,0.0002609276,0.00007487731,0.0000158753,0.00004374029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002321826,0.0001664793,0.2281906,0.000856472,0.0001014604,0.00001027418,0.00003019734,0.000002015337,0.01756315,0.00002287312,0.0002888315,0.7527444],"study_design_scores_gemma":[0.0003211593,0.0001481372,0.008460742,0.0006815281,0.0001253086,0.0001067065,0.00009719386,0.000002108696,0.00009173532,0.00005742928,0.9895793,0.0003286056],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.09777339,0.9006089,0.00007818743,0.00004793093,0.001018742,0.0003849124,0.00005176322,0.000007955503,0.00002821547],"genre_scores_gemma":[0.01099303,0.9882825,0.00005012827,0.00002133287,0.0001452337,0.00003105823,0.000408895,0.000002484527,0.00006532812],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9892905,"threshold_uncertainty_score":0.5294733,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2333373370","doi":"10.3389/fcimb.2016.00038","title":"Cellular Aspects of Shigella Pathogenesis: Focus on the Manipulation of Host Cell Processes","year":2016,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Shigella; Shigellosis; Biology; Microbiology; Shigella flexneri; Pathogenesis; Autophagy; Bacteria; Host (biology); Shigella dysenteriae; Cell biology; Immunology; Salmonella; Genetics; Escherichia coli; Apoptosis; Gene","authors":[{"name":"Samuel A. Killackey","is_ca":true},{"name":"Matthew T. Sorbara","is_ca":true},{"name":"Stephen E. Girardin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01773104678827636,"gpt":0.2579537111900022,"spread":0.2402226644017258,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004225698,0.0003428871,0.000877461,0.0002286996,0.00007223025,0.000008137075,0.0002090015,0.0005067507,0.00001135068],"category_scores_gemma":[0.0001615528,0.0002194037,0.0002194721,0.000277726,0.0003274936,0.000004219326,0.0001708298,0.0002054834,0.000003548483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003972557,"about_ca_system_score_gemma":0.0002152024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002259719,"about_ca_topic_score_gemma":0.00002004367,"domain_scores_codex":[0.9981183,0.0004912519,0.0005493659,0.0004873059,0.00007010928,0.0002837006],"domain_scores_gemma":[0.9988928,0.00009232823,0.0004681641,0.0003706998,0.0001410702,0.00003495745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001092771,0.0003592311,0.001787901,0.01544659,0.000500985,0.000006997999,0.00006893867,0.000003753381,0.9099876,0.0002624326,0.001942626,0.06952362],"study_design_scores_gemma":[0.0004648388,0.0006920972,0.0000390006,0.001879916,0.0001678497,0.00001014433,0.00003320451,0.00000177361,0.2717534,0.0001629461,0.7244124,0.0003823967],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008298397,0.9877536,0.001732463,0.00001779145,0.0003717983,0.0007510355,0.0000910696,0.000005970592,0.0009778661],"genre_scores_gemma":[0.04889359,0.9504787,0.00009320016,0.000009854033,0.0001182638,0.00007679771,0.0001237265,0.00003649174,0.0001693701],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7224698,"threshold_uncertainty_score":0.8947022,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3085885895","doi":"10.3389/fcimb.2020.00486","title":"Host Innate Immune Responses to Acinetobacter baumannii Infection","year":2020,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; Brock University","funders":"National Research Council Canada","keywords":"Acinetobacter baumannii; Innate immune system; Biology; Immunology; Immune system; Chemokine; Antibiotic resistance; Antibiotics; Microbiology; Bacteria","authors":[{"name":"Wangxue Chen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01184396471726324,"gpt":0.2619841191406113,"spread":0.250140154423348,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003093371,0.0005399463,0.001266607,0.000411759,0.0001004579,0.00005333581,0.0001790744,0.0009594233,0.00002627098],"category_scores_gemma":[0.000160813,0.0005100819,0.0003022285,0.0003617039,0.0001729638,0.00001040038,0.0002739946,0.0004355353,0.00005520489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00011572,"about_ca_system_score_gemma":0.000140979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006503829,"about_ca_topic_score_gemma":0.00003080436,"domain_scores_codex":[0.9973895,0.0005332725,0.0007285021,0.0008946086,0.00004016087,0.0004139435],"domain_scores_gemma":[0.9990857,0.00002023377,0.0002985668,0.0004205369,0.00005975103,0.0001151747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009517901,0.0003096055,0.04417613,0.008155629,0.001269432,0.00009108208,0.0001623534,0.000004119788,0.3900415,0.00003239424,0.04281947,0.5119865],"study_design_scores_gemma":[0.0003329883,0.0003732615,0.000983231,0.0007209734,0.0001358205,0.0001122719,0.000005381981,9.412453e-7,0.002769871,0.000004930881,0.9940469,0.0005133898],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03594631,0.9553466,0.004757898,0.00004257077,0.002727887,0.0008895099,0.0001107843,0.00003390103,0.0001445789],"genre_scores_gemma":[0.002052535,0.9946679,0.0007269307,0.0001288845,0.0003934776,0.00004660939,0.001056626,0.00007715575,0.0008498349],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9512275,"threshold_uncertainty_score":0.9997351,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162100190","doi":"10.3389/fcimb.2011.00017","title":"Major Host Factors Involved in Epithelial Cell Invasion of Campylobacter jejuni: Role of Fibronectin, Integrin Beta1, FAK, Tiam-1, and DOCK180 in Activating Rho GTPase Rac1","year":2011,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Uppsala Universitet; Science Foundation Ireland; York University; Fayetteville State University","keywords":"Biology; Cell biology; Integrin; Fibronectin; Membrane ruffling; Small interfering RNA; Focal adhesion; RAC1; Signal transduction; Cell; Cell culture; Cytoskeleton; Transfection; Extracellular matrix; Biochemistry","authors":[{"name":"Manja Boehm","is_ca":false},{"name":"Malgorzata Krause-Gruszczynska","is_ca":false},{"name":"Manfred Rohde","is_ca":false},{"name":"Nicole Tegtmeyer","is_ca":false},{"name":"Seiichiro Takahashi","is_ca":false},{"name":"Omar A. Oyarzábal","is_ca":false},{"name":"Steffen Backert","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01488460442655135,"gpt":0.1883405438894624,"spread":0.173455939462911,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004930171,0.0002295037,0.0005969673,0.0001760511,0.00004650484,0.000006502302,0.0001196425,0.0004008786,0.00009357405],"category_scores_gemma":[0.0001033715,0.0001231911,0.00007686295,0.0003441115,0.0002257239,0.0001320319,0.0001244712,0.0003288594,0.000001120376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004913624,"about_ca_system_score_gemma":0.00001249725,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008771086,"about_ca_topic_score_gemma":0.003895871,"domain_scores_codex":[0.9981071,0.0004656974,0.0006265401,0.0004255617,0.0000350474,0.0003400923],"domain_scores_gemma":[0.9993197,0.0002059773,0.0002954404,0.00007900617,0.00003917412,0.00006065559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008887385,0.0001149945,0.5011238,0.00001903176,0.000006091093,0.000001258665,0.0004751625,8.187509e-7,0.4964895,0.00000806886,0.00001321035,0.001659205],"study_design_scores_gemma":[0.0006137436,0.0004103574,0.5879025,0.00005167399,0.000008308152,0.000005159116,0.00149094,0.00002702735,0.4083917,0.0004540474,0.0004653233,0.0001791862],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984408,0.0007294159,0.00003239426,0.00002272973,0.0002895083,0.0002620478,0.0000401809,0.00001166068,0.0001712794],"genre_scores_gemma":[0.9990244,0.0004552002,0.0003307703,0.0000314583,0.00003132001,0.000008657858,0.00009586079,0.000002940266,0.00001940269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08809783,"threshold_uncertainty_score":0.9978296,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3127885930","doi":"10.3389/fcimb.2020.607650","title":"Immunometabolism of Macrophages in Bacterial Infections","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Université de Bordeaux; Fondation ARC pour la Recherche sur le Cancer; Agence Nationale de la Recherche","keywords":"Innate immune system; Biology; Effector; Macrophage; Macrophage polarization; Cell biology; Immunity; Inflammation; Intracellular parasite; Metabolic pathway; Crosstalk; Pattern recognition receptor; Intracellular; Microbiology; Immune system; Metabolism; Immunology; Biochemistry","authors":[{"name":"Gaël Galli","is_ca":false},{"name":"Maya Saleh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01238066316512767,"gpt":0.263614047023261,"spread":0.2512333838581334,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004152938,0.0003989387,0.00213688,0.001406716,0.0000989351,0.00001708983,0.0001483953,0.001135437,0.0004212706],"category_scores_gemma":[0.0001127282,0.0003786228,0.0004016991,0.0007419459,0.0002387962,0.00008541538,0.0001687354,0.0007935128,0.00002785968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001252139,"about_ca_system_score_gemma":0.0002397984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000338594,"about_ca_topic_score_gemma":0.00005851716,"domain_scores_codex":[0.9968202,0.001242187,0.001035276,0.0004885545,0.00001195443,0.0004018164],"domain_scores_gemma":[0.9990553,0.0001607858,0.0003907883,0.0003165489,0.00006127828,0.00001525934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008862799,0.001135423,0.002875355,0.004005618,0.001082663,0.00002973399,0.0003141557,0.000004022552,0.04759302,0.0005754004,0.003906176,0.9383898],"study_design_scores_gemma":[0.001193787,0.0001055145,0.0002557164,0.001262203,0.0002369591,0.0002768295,0.00003789462,3.124777e-7,0.001091904,0.00002069168,0.9951973,0.0003208983],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007041606,0.9861217,0.0003299501,0.000007418902,0.005712675,0.0004891385,0.0001599482,0.00002042351,0.0001171828],"genre_scores_gemma":[0.001250304,0.9961203,0.00009086881,0.000006190185,0.00004301148,0.00007982615,0.001552691,0.0000342682,0.0008225237],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9912911,"threshold_uncertainty_score":0.9998665,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2753068645","doi":"10.3389/fcimb.2017.00400","title":"Intracellular Trafficking Pathways of Edwardsiella tarda: From Clathrin- and Caveolin-Mediated Endocytosis to Endosome and Lysosome","year":2017,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Simon Fraser University; National Natural Science Foundation of China","keywords":"Endosome; Edwardsiella tarda; Endocytosis; Endocytic cycle; Clathrin; Intracellular; Biology; Cell biology; Lysosome; Pinocytosis; Intracellular parasite; Cell; Biochemistry","authors":[{"name":"Zhihai Sui","is_ca":false},{"name":"Haijiao Xu","is_ca":false},{"name":"Hongda Wang","is_ca":false},{"name":"Shuai Jiang","is_ca":false},{"name":"Heng Chi","is_ca":false},{"name":"Li Sun","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008664888671117248,"gpt":0.2039470729494727,"spread":0.1952821842783554,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002457766,0.0003194068,0.0006417112,0.0003108404,0.0003368092,0.00005077006,0.0001836013,0.0004419099,0.0000688745],"category_scores_gemma":[0.00009924126,0.000304464,0.00008209236,0.00008080577,0.0006177551,0.0001404925,0.0003277011,0.0003145111,0.00002138574],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003869348,"about_ca_system_score_gemma":0.00002362545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006145551,"about_ca_topic_score_gemma":0.0001065841,"domain_scores_codex":[0.9983208,0.0001781779,0.0004348519,0.0006284233,0.00001933949,0.0004184576],"domain_scores_gemma":[0.9992039,0.00006533467,0.000258918,0.0003565449,0.0000466044,0.00006869575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001535944,0.00008738352,0.06871861,0.00004902015,0.0002286961,0.00001462168,0.0008530698,0.00000303853,0.923365,0.0001328852,0.001463025,0.004931039],"study_design_scores_gemma":[0.008311468,0.000564901,0.05384873,0.0002110973,0.0004032363,0.0001009017,0.0009342587,0.00005600601,0.7676839,0.0005220073,0.1663022,0.001061272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842268,0.01138956,0.001960224,0.0001756801,0.001304042,0.0004606115,0.0002288794,0.00003915934,0.0002150681],"genre_scores_gemma":[0.9960895,0.002392133,0.0004733638,0.0001347714,0.00005457308,0.00001720195,0.000581047,0.00002229561,0.0002351075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1648392,"threshold_uncertainty_score":0.9999408,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3112371922","doi":"10.3389/fcimb.2020.602502","title":"Extracellular Vesicles in Trypanosomatids: Host Cell Communication","year":2020,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Université de Montréal","funders":"Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Trypanosoma cruzi; Trypanosoma brucei; Kinetoplastida; Trypanosoma; Leishmania; Chagas disease; Host (biology); Protozoa; Immune system; African trypanosomiasis; Vector (molecular biology); Intracellular parasite; Extracellular vesicle; Parasite hosting; Trypanosomiasis; Immunology; Cell biology; Microbiology; Virology; Microvesicles; Ecology; Genetics; Malaria; Protozoal disease; Gene; microRNA","authors":[{"name":"Ana Cláudia Torrecilhas","is_ca":false},{"name":"Rodrigo Pedro Soares","is_ca":false},{"name":"Sérgio Schenkman","is_ca":false},{"name":"Christopher Fernandez‐Prada","is_ca":true},{"name":"Martin Olivier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01018295025315136,"gpt":0.2465520765655107,"spread":0.2363691263123593,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003197393,0.0005834536,0.001248223,0.0003960842,0.0000886794,0.0000454775,0.0004129331,0.001093451,0.00001964067],"category_scores_gemma":[0.00008206532,0.0006159345,0.0003319523,0.0003918422,0.000303228,0.00001484308,0.0003375024,0.0007004331,0.00003083802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000124019,"about_ca_system_score_gemma":0.0001940398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000403375,"about_ca_topic_score_gemma":0.00003113652,"domain_scores_codex":[0.9966389,0.0009673926,0.0009583738,0.0009248526,0.00005828131,0.0004522313],"domain_scores_gemma":[0.9986652,0.00003771809,0.0004191895,0.0007100799,0.00003362882,0.0001342175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001956811,0.001385489,0.007015074,0.01632175,0.0004391133,0.000235942,0.0003732972,0.00002900315,0.4066849,0.0001859131,0.01702865,0.5501052],"study_design_scores_gemma":[0.0008082849,0.000134388,0.00002968566,0.0008548837,0.0001531008,0.00005888855,0.00004196318,0.00002806475,0.005925812,0.00007113576,0.9912731,0.0006207169],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005913227,0.9900165,0.002315548,0.00002087967,0.0005235421,0.0008818761,0.00007760887,0.00002723108,0.0002236162],"genre_scores_gemma":[0.003924818,0.9916144,0.001829413,0.00004333479,0.0001420043,0.0001201753,0.001900017,0.00009590009,0.0003299141],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9742444,"threshold_uncertainty_score":0.9996292,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2618467927","doi":"10.3389/fcimb.2017.00221","title":"Tracking Proteins Secreted by Bacteria: What's in the Toolbox?","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"European Research Council; Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Institut Pasteur; Institut national de la recherche scientifique","keywords":"Secretion; Organism; Secretory protein; Computational biology; Biology; Toolbox; Cell biology; Computer science; Biochemistry; Genetics","authors":[{"name":"Benoit Maffei","is_ca":false},{"name":"Olivera Francetić","is_ca":false},{"name":"Agathe Subtil","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01992872817164979,"gpt":0.2635457206855686,"spread":0.2436169925139189,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004978195,0.000403179,0.0009055259,0.0002097541,0.0001244865,0.0001864569,0.0004202734,0.001679143,0.000009324361],"category_scores_gemma":[0.00005499664,0.0003032653,0.00019566,0.0001260945,0.0002985377,0.00001510085,0.0001417427,0.0005593165,0.00000354374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003931201,"about_ca_system_score_gemma":0.00009164116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000606294,"about_ca_topic_score_gemma":0.00009300908,"domain_scores_codex":[0.9979398,0.0004544262,0.0005189655,0.0006603173,0.00003086393,0.0003955858],"domain_scores_gemma":[0.9990241,0.00001143136,0.0003383628,0.0005668024,0.00002692598,0.00003236426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002835585,0.0001044748,0.0002063025,0.000932313,0.0001161283,0.00001195609,0.00003893124,1.826946e-7,0.1940503,0.00000684519,0.003615788,0.8008884],"study_design_scores_gemma":[0.0003832417,0.0002399211,0.0000217568,0.0005738629,0.00007131736,0.0001167557,0.00003000539,9.235291e-7,0.005413995,0.00001664064,0.9927901,0.0003414842],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01163618,0.9849973,0.0004239088,0.00006147641,0.001778542,0.0009666497,0.00007190649,0.000009203367,0.0000548204],"genre_scores_gemma":[0.0018154,0.9955903,0.0002011243,0.00007319748,0.0002319607,0.0001254422,0.001800612,0.00003541528,0.0001265222],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9891743,"threshold_uncertainty_score":0.9999419,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3209126207","doi":"10.3389/fcimb.2021.683743","title":"Gut Microbiota, Glucose, Lipid, and Water-Electrolyte Metabolism in Children With Nonalcoholic Fatty Liver Disease","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"Central South University","keywords":"Roseburia; Nonalcoholic fatty liver disease; Internal medicine; Lipid metabolism; Dysbiosis; Biology; Fatty liver; Endocrinology; Gut flora; Biochemistry; Medicine; Lactobacillus; Disease","authors":[{"name":"Xiongfeng Pan","is_ca":false},{"name":"Atipatsa Chiwanda Kaminga","is_ca":false},{"name":"Aizhong Liu","is_ca":false},{"name":"Shi Wu Wen","is_ca":true},{"name":"Miyang Luo","is_ca":false},{"name":"Jiayou Luo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004172751508972113,"gpt":0.1915002304811778,"spread":0.1873274789722057,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008134025,0.0002213528,0.0004136075,0.0002266447,0.00006520344,0.00002393948,0.00002762227,0.0001248389,0.00006051147],"category_scores_gemma":[0.000008029043,0.0001621829,0.00007055546,0.0001582788,0.0001442444,0.00007996342,0.00005616578,0.0001900641,0.000008309518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007834104,"about_ca_system_score_gemma":0.00007086228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002498751,"about_ca_topic_score_gemma":0.00007888759,"domain_scores_codex":[0.9988085,0.0001248659,0.0002056451,0.0004895045,0.00003531082,0.0003361986],"domain_scores_gemma":[0.9995759,0.00001095812,0.00003761455,0.0001738101,0.00004539623,0.0001563542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000221909,0.0005433469,0.82831,0.00004463202,0.0002527319,0.0001241505,0.00009830252,0.000004237872,0.1680446,0.00001737477,0.000321076,0.002017648],"study_design_scores_gemma":[0.0046308,0.000134923,0.9138536,0.0000569416,0.0003501166,0.0002728144,0.00001334407,0.00003334567,0.07635184,0.00002911764,0.004072009,0.0002011161],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788676,0.01999134,0.0001970138,0.0002368776,0.0001779972,0.0004255682,0.00004503606,0.00001842397,0.00004016771],"genre_scores_gemma":[0.9907508,0.007367121,0.0004818691,0.0004347052,0.00008213454,0.00004433033,0.0007126562,0.00001953673,0.0001068419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09169272,"threshold_uncertainty_score":0.6613626,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2940314632","doi":"10.3389/fcimb.2019.00100","title":"Modulation of Host-Pathogen Communication by Extracellular Vesicles (EVs) of the Protozoan Parasite Leishmania","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Microvesicles; Leishmania; Biology; Exosome; Parasite hosting; Extracellular vesicles; Cell biology; Leishmania major; Pathogen; Protozoa; CD63; Microbiology; microRNA; Genetics; Gene","authors":[{"name":"George Dong","is_ca":true},{"name":"Alonso Lira Filho","is_ca":true},{"name":"Martin Olivier","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01137098527724998,"gpt":0.2534732658623715,"spread":0.2421022805851215,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004766156,0.0003586424,0.0009136677,0.0001595868,0.00006849732,0.00001184491,0.0004124085,0.0007461268,0.000008530637],"category_scores_gemma":[0.00006272771,0.000302808,0.0003808985,0.0002335972,0.0003905839,0.00001209413,0.0002623114,0.0003112011,0.000002811392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004948864,"about_ca_system_score_gemma":0.0001279116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003573585,"about_ca_topic_score_gemma":0.000008159613,"domain_scores_codex":[0.997515,0.000812067,0.0008587129,0.0005051301,0.00007089829,0.0002382197],"domain_scores_gemma":[0.9980031,0.00002587125,0.0008948132,0.0009465505,0.0000871512,0.00004246302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004165122,0.0002203571,0.007852778,0.004561262,0.0002064659,6.438042e-7,0.0000452278,0.00002233455,0.9149945,0.00003830771,0.001953401,0.07006308],"study_design_scores_gemma":[0.0006087563,0.0001752158,0.0003014016,0.00124836,0.000373023,0.00002788706,0.00001886771,0.00004979508,0.0710822,0.00005519245,0.9256307,0.0004286098],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0428111,0.9522061,0.002486719,0.0000067695,0.0004121497,0.00174727,0.0002599977,0.000007149915,0.0000627925],"genre_scores_gemma":[0.03452677,0.9622566,0.0006378063,0.00001159431,0.00004679419,0.000102259,0.001985835,0.0000586732,0.0003736572],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9236773,"threshold_uncertainty_score":0.9999424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2979765330","doi":"10.3389/fcimb.2019.00337","title":"RNA-Dependent Regulation of Virulence in Pathogenic Bacteria","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Biology; Listeria monocytogenes; Microbiology; Pseudomonas aeruginosa; Pathogen; Virulence factor; Human pathogen; Immune system; Gene; Pathogenic bacteria; Bacteria; Gene expression; Escherichia coli; Adaptation (eye); Regulation of gene expression; Staphylococcus aureus; Genetics","authors":[{"name":"Shubham Chakravarty","is_ca":true},{"name":"Éric Massé","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01708487370688669,"gpt":0.2759417901080787,"spread":0.258856916401192,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004268135,0.0002610139,0.0008977472,0.0003110234,0.00002533815,0.000008342974,0.0001326722,0.0005818595,0.00001288043],"category_scores_gemma":[0.00007324275,0.0002426687,0.0001632993,0.0002027927,0.000149677,0.000005687116,0.0002102103,0.0002743408,0.00000470323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007643604,"about_ca_system_score_gemma":0.0001363471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004598854,"about_ca_topic_score_gemma":0.00005277366,"domain_scores_codex":[0.9982244,0.0004491639,0.0005159875,0.0005030297,0.00003999761,0.000267418],"domain_scores_gemma":[0.9993711,0.00001914001,0.0002508694,0.0002850015,0.00004528086,0.00002867782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006620837,0.000130847,0.00553323,0.006161528,0.0002051158,0.000004133023,0.00003622975,0.00001143877,0.7475148,0.00001364405,0.0008343978,0.2394884],"study_design_scores_gemma":[0.0007214718,0.0003202223,0.0006832851,0.00118502,0.0001015206,0.00003105048,0.00001496995,0.00001557433,0.006337514,0.0000287631,0.9901528,0.0004077704],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02471616,0.9729471,0.0007648871,0.000003041305,0.0007758795,0.0006058098,0.00005142506,0.000004106474,0.0001316085],"genre_scores_gemma":[0.004281166,0.9944056,0.0003877362,0.000008665422,0.00006836669,0.00005432112,0.0004360425,0.00002457473,0.000333566],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9893184,"threshold_uncertainty_score":0.9895743,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2737213693","doi":"10.3389/fcimb.2017.00335","title":"What the SIF Is Happening—The Role of Intracellular Salmonella-Induced Filaments","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Salmonella; Salmonella enterica; Intracellular; Vacuole; Biogenesis; Endosome; Secretion; Biology; Cell biology; Microbiology; Effector; Intracellular parasite; Type three secretion system; Pathogenicity island; Pathogen; Cytoplasm; Bacteria; Virulence; Genetics; Gene; Biochemistry","authors":[{"name":"Katelyn Knuff","is_ca":true},{"name":"B. Brett Finlay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0188580960388485,"gpt":0.2641445128270274,"spread":0.2452864167881789,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005644733,0.0004226796,0.0009148925,0.0001396657,0.0002588642,0.00008333365,0.0004332275,0.0008704645,0.00003774385],"category_scores_gemma":[0.00002133164,0.0002799708,0.0004530602,0.0001096414,0.0003934513,0.00001602372,0.0001437963,0.0004782422,0.000008040392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003190108,"about_ca_system_score_gemma":0.0001039783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001162974,"about_ca_topic_score_gemma":0.00002991967,"domain_scores_codex":[0.9980521,0.0003212275,0.0006384848,0.000584174,0.0000655601,0.0003385197],"domain_scores_gemma":[0.9985128,0.00001988345,0.0005829107,0.0007799449,0.00005665925,0.00004781021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005320583,0.000102008,0.001292147,0.001108809,0.0005342443,0.000006599079,0.0002666992,0.000001407935,0.2749908,0.00002461261,0.000956949,0.7206625],"study_design_scores_gemma":[0.0002716419,0.0001352457,0.0000145183,0.0005147049,0.0002886838,0.00005512256,0.00008752982,0.00001404418,0.02015838,0.00008030213,0.9780914,0.0002884548],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006738681,0.9890137,0.001164603,0.00004022646,0.002077059,0.00076155,0.00003421357,0.000006669352,0.0001633095],"genre_scores_gemma":[0.004656646,0.9917507,0.00005000491,0.00004610794,0.0002759225,0.00004895038,0.00265263,0.00004431294,0.0004747698],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9771344,"threshold_uncertainty_score":0.9999653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3109920867","doi":"10.3389/fcimb.2020.583418","title":"The Fungal Microbiome and Asthma","year":2020,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Cumming School of Medicine, University of Calgary; W. Garfield Weston Foundation; Alberta Children's Hospital Research Institute; Canadian Lung Association; Sick Kids Foundation","keywords":"Microbiome; Asthma; Immunology; Etiology; Biology; Immune system; Human microbiome; Medicine; Bioinformatics; Pathology","authors":[{"name":"Erik van Tilburg Bernardes","is_ca":true},{"name":"Mackenzie W. Gutierrez","is_ca":true},{"name":"Marie‐Claire Arrieta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0110814452074181,"gpt":0.2583974779328104,"spread":0.2473160327253923,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001684142,0.0003206692,0.001115027,0.0002080501,0.0001746326,0.00003257161,0.00006177336,0.0004459242,0.00001369493],"category_scores_gemma":[0.00004052334,0.0002016999,0.0002297491,0.0002220526,0.0004198645,0.00002923175,0.00009500153,0.0004975598,0.00001912985],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007470412,"about_ca_system_score_gemma":0.0001592561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007763721,"about_ca_topic_score_gemma":0.000003407236,"domain_scores_codex":[0.9985868,0.0002599404,0.0004170105,0.0004374402,0.00002688792,0.0002719489],"domain_scores_gemma":[0.9994601,0.00005508437,0.0001557279,0.0001743801,0.00002408009,0.000130601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000366148,0.00004089947,0.001367398,0.003154346,0.0001517083,0.00008406889,0.00002304146,2.797745e-8,0.0003937262,0.00001322982,0.01102842,0.9837065],"study_design_scores_gemma":[0.0004553632,0.0002107824,0.00006255936,0.0008560442,0.0002699735,0.0007763252,0.00002023589,0.000002762212,0.00002653539,0.00000867436,0.9971162,0.0001945581],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004565475,0.9973035,0.0002641432,0.00007697201,0.001113572,0.0005896684,0.00004514846,0.00002990654,0.0001205023],"genre_scores_gemma":[0.0000748184,0.99883,0.0001092987,0.000137936,0.000240164,0.00003007871,0.0001563545,0.00003245942,0.0003888864],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9860878,"threshold_uncertainty_score":0.8225084,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115675625","doi":"10.3389/fcimb.2012.00015","title":"Defense and Adaptation: The Complex Inter-Relationship between Campylobacter jejuni and Mucus","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Campylobacter jejuni; Mucin; Mucus; Microbiology; Biology; Organism; Bacteria; Immunology; Ecology; Genetics","authors":[{"name":"Abofu Alemka","is_ca":true},{"name":"Nicolae Corcionivoschi","is_ca":false},{"name":"Billy Bourke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1146782052755389,"gpt":0.2769433055913166,"spread":0.1622651003157776,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006680007,0.0003386246,0.0009422571,0.00006993364,0.0002509737,0.00004512481,0.0001149804,0.000615599,0.00005402971],"category_scores_gemma":[0.00007016691,0.00013329,0.000129999,0.0002243505,0.0004091243,0.0000825479,0.0001450555,0.0004782134,0.00001058371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004289932,"about_ca_system_score_gemma":0.000009901378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000215859,"about_ca_topic_score_gemma":0.0002228962,"domain_scores_codex":[0.9975854,0.001023986,0.0005596597,0.000449824,0.00002624674,0.0003548954],"domain_scores_gemma":[0.9986316,0.0008752242,0.0002852914,0.00008690308,0.00002496512,0.00009599038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006323104,0.00002248579,0.3093578,0.0002625063,0.00005874617,0.000001166466,0.0001002966,5.80505e-8,0.00007080255,0.00009250106,0.0008323702,0.689195],"study_design_scores_gemma":[0.0001242567,0.0001051544,0.05343958,0.0001527123,0.0002538709,0.0001399819,0.00007729695,0.000004935765,9.375758e-7,0.0003555191,0.945079,0.0002667875],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06318668,0.9350501,0.0002355185,0.000168884,0.000655841,0.0004793125,0.00009670449,0.00002804872,0.00009890189],"genre_scores_gemma":[0.09671789,0.9012833,0.0001863284,0.0001380087,0.0004596469,0.00004062936,0.001049795,0.000004675788,0.0001197357],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9442466,"threshold_uncertainty_score":0.5435407,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2915484156","doi":"10.3389/fcimb.2019.00028","title":"Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia","year":2019,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; IWK Health Centre; Cancer Research Institute; Terry Fox Research Institute; Beatrice Hunter Cancer Research Institute; Nova Scotia Health Research Foundation","keywords":"Metagenomics; Microbiome; Lymphoblastic Leukemia; Biology; Leukemia; Immunology; Medicine; Gene; Bioinformatics; Genetics","authors":[{"name":"Jacob T. Nearing","is_ca":true},{"name":"Jessica Connors","is_ca":true},{"name":"Scott Whitehouse","is_ca":true},{"name":"Johan Van Limbergen","is_ca":true},{"name":"Tamara MacDonald","is_ca":true},{"name":"Ketan Kulkarni","is_ca":true},{"name":"Morgan G. I. Langille","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003143028399629418,"gpt":0.1926286290505787,"spread":0.1894856006509493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001850905,0.0001967637,0.0002460548,0.0003186096,0.00009218962,0.0000264929,0.0001079168,0.0002385833,0.000005400505],"category_scores_gemma":[0.00001638441,0.0001490924,0.00003213124,0.0004788559,0.00009942149,0.00001440104,0.00003863358,0.0002309224,0.0000070863],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001779239,"about_ca_system_score_gemma":0.000136752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001330163,"about_ca_topic_score_gemma":0.001858337,"domain_scores_codex":[0.998735,0.0002146323,0.0002802686,0.0004123408,0.00003306706,0.0003247559],"domain_scores_gemma":[0.9994878,0.00002389643,0.000156744,0.0002304222,0.00006858536,0.00003256578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007638574,0.0002171394,0.9115868,0.00002100527,0.0000307806,0.000002629489,0.000126739,0.0002765773,0.08690563,0.00000841905,0.0007143355,0.00003353982],"study_design_scores_gemma":[0.00372306,0.0005703036,0.992899,0.00003873,0.0000340689,0.00003311627,0.00005905572,0.00005402172,0.0008143809,0.00001678625,0.001506472,0.0002510181],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973379,0.0002175129,0.001269997,0.00006624102,0.0002255857,0.0006641081,0.00005739936,0.00000944259,0.0001517951],"genre_scores_gemma":[0.9980604,0.0001942681,0.0001417928,0.0003444893,0.00002795188,0.00004704153,0.001090397,0.00001816139,0.00007549155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08609125,"threshold_uncertainty_score":0.6079811,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2953831036","doi":"10.3389/fcimb.2019.00243","title":"Dose Effects of Orally Administered Spirulina Suspension on Colonic Microbiota in Healthy Mice","year":2019,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Science Foundation of Shaanxi Provincial Department of Education; Fundamental Research Funds for the Central Universities; Shaanxi Province Postdoctoral Science Foundation; China Postdoctoral Science Foundation; National Natural Science Foundation of China","keywords":"Spirulina (dietary supplement); Gut flora; Bacteroides; Biology; Eubacterium; Nutraceutical; Food science; Microbiology; Physiology; Bacteria; Immunology","authors":[{"name":"Jinlu Hu","is_ca":false},{"name":"Yaguang Li","is_ca":false},{"name":"Sepideh Pakpour","is_ca":true},{"name":"Sufang Wang","is_ca":false},{"name":"Zhenhong Pan","is_ca":false},{"name":"Junhong Liu","is_ca":false},{"name":"Qingxia Wei","is_ca":true},{"name":"Junjun She","is_ca":false},{"name":"Huaixing Cang","is_ca":false},{"name":"Ruixue Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005007343955970966,"gpt":0.2324554076189856,"spread":0.2274480636630146,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002714111,0.0002242127,0.000433668,0.0002864009,0.00004507124,0.000007965367,0.000106233,0.0004577848,0.00001577082],"category_scores_gemma":[0.0000301356,0.0002264383,0.00008071507,0.0001837881,0.0001158517,0.000006325232,0.00008781629,0.000249097,0.00001554033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000728029,"about_ca_system_score_gemma":0.0001068139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001819148,"about_ca_topic_score_gemma":0.0002542609,"domain_scores_codex":[0.9983603,0.0002539175,0.000429045,0.0005438791,0.00002714141,0.0003856878],"domain_scores_gemma":[0.9994234,0.00002228505,0.0001717577,0.000277679,0.00004103432,0.00006382554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009900553,0.0002490035,0.07265405,0.0003032174,0.00001924816,0.000006117207,0.00006573593,0.0000165301,0.9238605,0.00003023973,0.001361236,0.0004440368],"study_design_scores_gemma":[0.008885222,0.008019797,0.08519951,0.0002262381,0.00002314122,0.00008543456,0.00006640267,0.00003612735,0.8395767,0.00004052807,0.05730671,0.0005342496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954903,0.001879399,0.0001327331,0.0001933521,0.001441503,0.0007049753,0.00001419592,0.000007577189,0.0001359476],"genre_scores_gemma":[0.9971924,0.001232666,0.0005248652,0.0005557631,0.00004240881,0.000009646759,0.0002255336,0.00002247905,0.0001942315],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0842839,"threshold_uncertainty_score":0.9233887,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2966597239","doi":"10.3389/fcimb.2019.00298","title":"Sex-Specific Linkages Between Taxonomic and Functional Profiles of Tick Gut Microbiomes","year":2019,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; ASL Environmental Sciences (Canada)","funders":"","keywords":"Biology; Microbiome; Gut microbiome; Metagenomics; Tick; Computational biology; Zoology; Evolutionary biology; Ecology; Genetics","authors":[{"name":"Dasiel Obregón","is_ca":true},{"name":"Émilie Bard","is_ca":false},{"name":"David Abrial","is_ca":false},{"name":"Agustín Estrada‐Peña","is_ca":false},{"name":"Alejandro Cabezas‐Cruz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01181931932669925,"gpt":0.179991319902457,"spread":0.1681720005757578,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001946319,0.000130196,0.0002994847,0.00005337537,0.00007254097,0.00002617687,0.00005209754,0.0001923197,0.0002046566],"category_scores_gemma":[0.000004382108,0.00006343004,0.00005035845,0.000119306,0.0001798879,0.00009007675,0.00005190876,0.0001033813,0.00001066608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001757544,"about_ca_system_score_gemma":0.000005327336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001332956,"about_ca_topic_score_gemma":0.00001235716,"domain_scores_codex":[0.9991565,0.00009341077,0.0002613507,0.0002892398,0.00002155038,0.0001779963],"domain_scores_gemma":[0.9997386,0.00005781371,0.0001071985,0.00003976796,0.00002730914,0.00002935138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007088303,0.00001626131,0.4208924,0.00001054343,0.00001112462,1.256613e-7,0.00001749087,3.457482e-7,0.5760323,0.00001976111,0.0005109507,0.002481675],"study_design_scores_gemma":[0.000370565,0.0003412951,0.6457767,0.00002727272,0.00001042923,0.0000117231,0.000131795,0.000005943121,0.2991569,0.0001809973,0.05377355,0.0002128389],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978773,0.0008787106,0.0000334942,0.0000817052,0.0007080042,0.0002141384,0.00007069081,0.0000144866,0.000121457],"genre_scores_gemma":[0.9987879,0.0004539301,0.0002010277,0.00003861737,0.0001537738,0.000005699551,0.0001785268,0.000001162012,0.0001793136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2768754,"threshold_uncertainty_score":0.2586602,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4283026200","doi":"10.3389/fcimb.2022.887907","title":"Current State and Challenges of the Global Outcomes of Dental Caries Research in the Meta-Omics Era","year":2022,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Omics; Dental research; Meta-analysis; Medicine; State (computer science); Data science; Dentistry; Bioinformatics; Computer science; Biology; Internal medicine","authors":[{"name":"Dina G. Moussa","is_ca":true},{"name":"Paras Ahmad","is_ca":true},{"name":"Tamer Mansour","is_ca":false},{"name":"Walter L. Siqueira","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08215046890923346,"gpt":0.3399329296244833,"spread":0.2577824607152499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001100597,0.0002127701,0.001002404,0.00017268,0.00009004015,0.000008465663,0.0002241833,0.0001485686,0.000004078348],"category_scores_gemma":[0.00006858568,0.0001222444,0.0002637613,0.0002635339,0.0004755392,0.000002780077,0.0004657386,0.000397844,1.046115e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004389805,"about_ca_system_score_gemma":0.00008516659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001048588,"about_ca_topic_score_gemma":0.0002860445,"domain_scores_codex":[0.9979132,0.001029873,0.0004325331,0.0003408454,0.00006723408,0.0002163391],"domain_scores_gemma":[0.9993966,0.00006492027,0.0002238905,0.0002710611,0.00002870437,0.00001486799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001143713,0.0007508439,0.1059875,0.01170363,0.00604361,0.000006375694,0.0007212927,0.00001015737,0.00280813,0.002776458,0.001824061,0.8672535],"study_design_scores_gemma":[0.0002443876,0.0001427705,0.00108156,0.00005420806,0.0003898546,0.00002557029,0.0001831992,4.571843e-7,0.0003007767,0.0004634201,0.9969851,0.0001286357],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02098631,0.9774622,0.00003491746,0.00005181223,0.000728103,0.0004525993,0.0002131345,8.504935e-7,0.00007001677],"genre_scores_gemma":[0.006016822,0.9937278,0.00006481278,0.000008899264,0.00002299176,0.00006792017,0.00006830466,0.000008887302,0.00001355441],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9951611,"threshold_uncertainty_score":0.4984984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3005406464","doi":"10.3389/fcimb.2020.00028","title":"What Are the Functions of Chitin Deacetylases in Aspergillus fumigatus?","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Institutes of Health; National Eye Institute; Fondation pour la Recherche Médicale; Alliance Nationale pour les Sciences de la Vie et de la Santé","keywords":"Aspergillus fumigatus; Virulence; Chitin; Cell wall; Microbiology; Conidiation; Biology; Chitosan; Mutant; Glucosamine; Biochemistry; Gene","authors":[{"name":"Isabelle Mouyna","is_ca":false},{"name":"Sarah Dellière","is_ca":true},{"name":"Anne Beauvais","is_ca":false},{"name":"Fabrice N. Gravelat","is_ca":true},{"name":"Brendan D. Snarr","is_ca":true},{"name":"Mélanie Lehoux","is_ca":true},{"name":"Caitlin Zacharias","is_ca":true},{"name":"Yan Sun","is_ca":false},{"name":"Steven de Jesus Carrion","is_ca":false},{"name":"Eric Pearlman","is_ca":false},{"name":"Donald C. Sheppard","is_ca":true},{"name":"Jean‐Paul Latgé","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01325884301931733,"gpt":0.2271297459194861,"spread":0.2138709029001687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001633939,0.00009776968,0.0002958195,0.00008411842,0.00004583875,0.000008620441,0.00003440789,0.0001291516,0.00004751563],"category_scores_gemma":[0.0001100015,0.00007190508,0.00007075105,0.0002499381,0.0002346842,0.00008426481,0.00002776057,0.0002581461,0.000005234505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003955781,"about_ca_system_score_gemma":0.00003475113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000688432,"about_ca_topic_score_gemma":0.0002063255,"domain_scores_codex":[0.9992271,0.0001118234,0.0002519861,0.0002254331,0.0000290692,0.0001545633],"domain_scores_gemma":[0.9996963,0.000033215,0.00007092747,0.0001218594,0.00003364452,0.00004411387],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002209423,0.00008410502,0.8731969,0.00008569148,0.00002404394,0.000007592026,0.0003434278,0.00002007211,0.1220992,0.00002025732,0.002343277,0.001554476],"study_design_scores_gemma":[0.004358765,0.0009913906,0.8430365,0.0003709023,0.0001253594,0.00006628284,0.01268873,0.0006385173,0.08755169,0.0002077168,0.04961201,0.000352167],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906404,0.004775411,0.00206991,0.001477656,0.0005925695,0.0002305668,0.000009558426,0.00001301686,0.0001909366],"genre_scores_gemma":[0.9972517,0.001850497,0.00009239339,0.0005477024,0.00006386154,0.000006671441,0.00003692095,0.000006688688,0.000143496],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04726873,"threshold_uncertainty_score":0.2932204,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3024776812","doi":"10.3389/fcimb.2020.00209","title":"Pattern Recognition Receptor Signaling and Innate Responses to Influenza A Viruses in the Mallard Duck, Compared to Humans and Chickens","year":2020,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alberta Innovates; University of Alberta","keywords":"Biology; Innate immune system; Virology; Pattern recognition receptor; Influenza A virus subtype H5N1; Virus; RIG-I; Viral replication; Effector; TLR3; TRIF; Influenza A virus; Receptor; Immune system; Immunology; Toll-like receptor; Genetics","authors":[{"name":"Lee K. Campbell","is_ca":true},{"name":"Katharine E. Magor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04785918701895162,"gpt":0.2961991543002098,"spread":0.2483399672812582,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006633189,0.0004940447,0.001388567,0.0008916447,0.0001884948,0.00006632641,0.0001887071,0.0006706375,0.00005364001],"category_scores_gemma":[0.0002540449,0.0003930945,0.0001231528,0.000377328,0.0002598646,0.00007509194,0.0002194061,0.0008678998,0.0001095433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009524715,"about_ca_system_score_gemma":0.00007154969,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002536203,"about_ca_topic_score_gemma":0.0001354744,"domain_scores_codex":[0.9958035,0.002259149,0.0007738907,0.0007045335,0.00001897726,0.0004399589],"domain_scores_gemma":[0.9991369,0.000351449,0.0001997297,0.0002199183,0.00004393994,0.00004811356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001817258,0.0002382428,0.007467721,0.00283503,0.0006465559,0.0000466284,0.0087792,9.123165e-7,0.1105618,0.00001343935,0.01161685,0.8559763],"study_design_scores_gemma":[0.0008841914,0.0005501989,0.0003092484,0.00190528,0.0001462977,0.0002112514,0.0003958131,4.613009e-7,0.002127066,0.00001472721,0.9929947,0.000460811],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.255033,0.7419606,0.0004046655,0.0001325912,0.001066027,0.001160873,0.0001939137,0.00003022633,0.00001800032],"genre_scores_gemma":[0.01071621,0.9854543,0.0002490754,0.002680898,0.00007499554,0.0002316093,0.0003859522,0.00005737502,0.0001495428],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9813778,"threshold_uncertainty_score":0.9998521,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051558613","doi":"10.3389/fcimb.2013.00022","title":"Prospects for circumventing aminoglycoside kinase mediated antibiotic resistance","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Aminoglycoside; Antibiotics; Antimicrobial; Antibiotic resistance; Phosphotransferases; Kinase; Biology; Computational biology; Drug resistance; Pharmacology; Bioinformatics; Microbiology; Genetics","authors":[{"name":"Kun Shi","is_ca":true},{"name":"S.J. Caldwell","is_ca":true},{"name":"D.H. Fong","is_ca":true},{"name":"Albert M. Berghuis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01325588431000353,"gpt":0.2541381323558063,"spread":0.2408822480458028,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003464107,0.0005249457,0.001252964,0.000276456,0.0001268867,0.00005751381,0.0002100346,0.001019544,0.00001062662],"category_scores_gemma":[0.0002187321,0.0004949969,0.0003254121,0.0002131525,0.0002771987,0.00001062031,0.0001200458,0.0002877334,0.00001328073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001044182,"about_ca_system_score_gemma":0.0001376938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000189272,"about_ca_topic_score_gemma":0.0000506438,"domain_scores_codex":[0.9974386,0.0002467069,0.000754189,0.0009652015,0.00004016894,0.0005551254],"domain_scores_gemma":[0.9988511,0.00004682982,0.0005037372,0.0004331878,0.00008401234,0.00008116891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003175104,0.0007554075,0.02949955,0.07149584,0.001852178,0.00007106404,0.00009338523,0.000003322967,0.4226816,0.000268896,0.1172976,0.3556637],"study_design_scores_gemma":[0.0005860735,0.0001315479,0.00005561384,0.00178943,0.000181955,0.00003772148,0.00001024304,0.000004692768,0.003878026,0.00004430348,0.9927252,0.0005551715],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00646963,0.9827879,0.006702659,0.000007794793,0.001883974,0.001832623,0.0001328263,0.0000257833,0.000156805],"genre_scores_gemma":[0.001140188,0.9904472,0.0037213,0.0000341356,0.0003110079,0.00009055139,0.002607677,0.00009189177,0.001556081],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8754277,"threshold_uncertainty_score":0.9997502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3026314653","doi":"10.3389/fcimb.2020.00228","title":"Utilizing Organoid and Air-Liquid Interface Models as a Screening Method in the Development of New Host Defense Peptides","year":2020,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Simon Fraser University; Michael Smith Health Research BC","keywords":"Computational biology; Antimicrobial peptides; Drug development; Biology; Innate immune system; Organoid; Drug discovery; Induced pluripotent stem cell; Drug; Immune system; Peptide; Cell biology; Bioinformatics; Biochemistry; Pharmacology; Embryonic stem cell; Immunology","authors":[{"name":"Ka-Yee Grace Choi","is_ca":true},{"name":"Bing Wu","is_ca":true},{"name":"Amy Huei‐Yi Lee","is_ca":true},{"name":"Beverlie Baquir","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03583367441302395,"gpt":0.2860075914190091,"spread":0.2501739170059852,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006768654,0.0004990337,0.001675508,0.000439001,0.0001611165,0.00002133969,0.0002256336,0.0007448917,0.00002978919],"category_scores_gemma":[0.00005672262,0.000385731,0.0001916309,0.0003198812,0.0003184421,0.0001319488,0.0002751425,0.0009150695,0.00001141887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000717431,"about_ca_system_score_gemma":0.0002485905,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004138482,"about_ca_topic_score_gemma":0.00008415036,"domain_scores_codex":[0.997201,0.0008442358,0.0009051238,0.0006154191,0.00002093778,0.0004132355],"domain_scores_gemma":[0.9991285,0.0002007648,0.0004149824,0.000197115,0.00002767117,0.00003096777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004509122,0.0002191684,0.0002722322,0.004994802,0.001051371,0.00002621951,0.0137384,0.00004571484,0.1040254,0.0002674909,0.004474057,0.8704343],"study_design_scores_gemma":[0.0009816112,0.0003202099,0.000009641729,0.002941353,0.0002985222,0.0006002585,0.002054567,0.00001340134,0.0186993,0.00008163281,0.973406,0.0005935151],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006831991,0.9255897,0.06616068,0.00004566943,0.0005003494,0.0006344077,0.00003277257,0.00002527262,0.0001791713],"genre_scores_gemma":[0.01131344,0.9733609,0.01458635,0.0001224325,0.00004190419,0.00002765308,0.0002290034,0.00005181188,0.0002665081],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9689319,"threshold_uncertainty_score":0.9998595,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3092477052","doi":"10.3389/fcimb.2020.00440","title":"Intranasal Application of Lactococcus lactis W136 Is Safe in Chronic Rhinosinusitis Patients With Previous Sinus Surgery","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Sinusitis and nasal conditions","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McGill University Health Centre; Centre Hospitalier de l’Université de Montréal","funders":"McMaster University; Faculty of Medicine, McGill University; McGill University","keywords":"Medicine; Chronic rhinosinusitis; Adverse effect; Microbiome; Sinusitis; Sinus (botany); Functional endoscopic sinus surgery; Internal medicine; Lactococcus lactis; Surgery; Bacteria; Bioinformatics; Biology","authors":[{"name":"Léandra Mfuna Endam","is_ca":true},{"name":"Saud Alromaih","is_ca":false},{"name":"Emmanuel González","is_ca":true},{"name":"Joaquı́n Madrenas","is_ca":false},{"name":"Benoit Cousineau","is_ca":true},{"name":"Axel E. Renteria","is_ca":true},{"name":"Martin Desrosiers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006835610359710177,"gpt":0.2087493738063707,"spread":0.2019137634466605,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008964213,0.0001424236,0.0004374829,0.0002470332,0.00003541587,0.000005962163,0.00003062069,0.000173928,0.00006945163],"category_scores_gemma":[0.0000213193,0.0001323544,0.00006009849,0.0003908293,0.0001342328,0.00008467605,0.00001861922,0.0002183165,0.000004450752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001657525,"about_ca_system_score_gemma":0.0001025608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003651132,"about_ca_topic_score_gemma":0.0001058329,"domain_scores_codex":[0.9990373,0.00008047571,0.0003464578,0.0002978647,0.0000454312,0.0001924496],"domain_scores_gemma":[0.9995795,0.0000378355,0.0001312722,0.0001159087,0.00006617894,0.00006926419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002611635,0.0001481756,0.9577414,0.0001486058,0.00004473325,0.00001553456,0.0002030565,0.00001273506,0.03124955,0.000007515046,0.004470252,0.005697329],"study_design_scores_gemma":[0.004906121,0.001150142,0.9530439,0.0001719113,0.000110525,0.00004732852,0.00003843968,0.0004710769,0.02620253,0.00002101472,0.01352633,0.000310718],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989006,0.0008801317,0.008899692,0.0001915418,0.0002052299,0.0006303108,0.00006586208,0.0000201965,0.0001010063],"genre_scores_gemma":[0.9985874,0.0002388343,0.0002452148,0.0003882307,0.00006673394,0.0000290095,0.0004176275,0.0000157044,0.00001123575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00958138,"threshold_uncertainty_score":0.5397257,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3204065639","doi":"10.3389/fcimb.2021.709372","title":"Microbiome Compositions From Infertile Couples Seeking In Vitro Fertilization, Using 16S rRNA Gene Sequencing Methods: Any Correlation to Clinical Outcomes?","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics","funders":"","keywords":"Biology; Gardnerella vaginalis; Lactobacillus gasseri; Lactobacillus; Prevotella; Ruminococcus; Microbiology; Lactobacillus crispatus; Bacteroidetes; Firmicutes; Haemophilus; Microbiome; Peptostreptococcus; Bacteroides thetaiotaomicron; Ureaplasma; Bacteroides; Bacterial vaginosis; 16S ribosomal RNA; Genetics; Mycoplasma; Bacteria; Feces","authors":[{"name":"Somadina I. Okwelogu","is_ca":false},{"name":"Joseph Ifeanyichukwu Ikechebelu","is_ca":false},{"name":"Nneka R. Agbakoba","is_ca":false},{"name":"Kingsley C. Anukam","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04618078272662948,"gpt":0.3553763551341887,"spread":0.3091955724075592,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001238164,0.0003013214,0.0007439862,0.0008792314,0.000306406,0.00005178921,0.0001261741,0.0006376011,0.0001396353],"category_scores_gemma":[0.0006448515,0.000326348,0.000158659,0.0009658684,0.0003242931,0.0002440877,0.0001945787,0.0008177928,0.00005285793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005892037,"about_ca_system_score_gemma":0.0002448501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112896,"about_ca_topic_score_gemma":0.0002384398,"domain_scores_codex":[0.9954734,0.002014334,0.001007119,0.000931968,0.00003017989,0.0005430394],"domain_scores_gemma":[0.9986253,0.000417405,0.0002016439,0.0004240321,0.0002717368,0.00005991965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009620622,0.000182938,0.359156,0.000009799269,0.0001393483,0.00000747898,0.0002096998,0.001003139,0.6379352,0.000008311403,0.0001266269,0.001125274],"study_design_scores_gemma":[0.002095822,0.0001442366,0.1406055,0.00006680187,0.0000725717,0.0002036036,0.0002792332,0.001408554,0.8484921,0.0002864779,0.005902876,0.0004422163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6854632,0.00225885,0.3087453,0.00009172352,0.002910071,0.0003646372,0.0000902224,0.00004603502,0.00002991968],"genre_scores_gemma":[0.9606175,0.000323811,0.03706228,0.0002406533,0.00007335352,0.00003683237,0.0014736,0.00003711631,0.0001348556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2751543,"threshold_uncertainty_score":0.9999189,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3194508029","doi":"10.3389/fcimb.2021.660983","title":"Inflammatory Amplification: A Central Tenet of Uterine Transition for Labor","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Pregnancy and Medication Impact","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; University of Alberta","funders":"Children's Hospital Foundation; Stollery Children’s Hospital Foundation; Canadian Institutes of Health Research; Women and Children's Health Research Institute; Children's Health Research Institute","keywords":"Transition (genetics); Medicine; Biology; Genetics","authors":[{"name":"Kelycia B Leimert","is_ca":true},{"name":"Wendy Xu","is_ca":true},{"name":"Magdalena M. Princ","is_ca":true},{"name":"Sylvain Chemtob","is_ca":true},{"name":"David M. Olson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01996845398370838,"gpt":0.3022351217399887,"spread":0.2822666677562803,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002019397,0.0002017699,0.001133695,0.0003004505,0.00003103875,0.000004907389,0.00004071939,0.0004494667,0.00004681759],"category_scores_gemma":[0.0000651904,0.0001787077,0.0002471765,0.0002027009,0.0001267702,0.00004067504,0.00001266969,0.0002189013,0.000001092224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009921816,"about_ca_system_score_gemma":0.0003156974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007965797,"about_ca_topic_score_gemma":0.000002001954,"domain_scores_codex":[0.9987381,0.0001368161,0.0005817163,0.0003006083,0.0000296977,0.0002130368],"domain_scores_gemma":[0.9993463,0.00003827511,0.0002535326,0.0002049768,0.00007991671,0.00007696927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008217539,0.0002886296,0.0009505335,0.04615716,0.0004599875,0.00001252392,0.0003186225,0.0000014106,0.003981793,0.0001561989,0.005716929,0.941874],"study_design_scores_gemma":[0.0009642615,0.0001459219,0.0001149935,0.005500144,0.0003885999,0.0001951652,0.00001860807,0.000012503,0.0005602085,0.00001716733,0.9919395,0.0001429703],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004396623,0.9502208,0.04706436,0.00006193909,0.0009806008,0.0009492774,0.0002379278,0.00001850901,0.00002691884],"genre_scores_gemma":[0.0001956027,0.9949996,0.001578035,0.00007062643,0.0001640967,0.0001345877,0.002606341,0.00002164099,0.0002294648],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9862225,"threshold_uncertainty_score":0.728749,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200194049","doi":"10.3389/fcimb.2021.739707","title":"The Role of the Microbiota in Graves’ Disease and Graves’ Orbitopathy","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Salivary Gland Disorders and Functions","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"National Natural Science Foundation of China","keywords":"Gut flora; Medicine; Dysbiosis; Immunology","authors":[{"name":"Jueyu Hou","is_ca":false},{"name":"Yunjing Tang","is_ca":false},{"name":"Yongjiang Chen","is_ca":true},{"name":"Danian Chen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008899511684206333,"gpt":0.2386388553138228,"spread":0.2297393436296165,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002222169,0.0002428471,0.0008825628,0.0002067245,0.0001300525,0.00001781327,0.00007523592,0.000289066,0.00001112785],"category_scores_gemma":[0.0000731068,0.0001396623,0.0002530586,0.0003793829,0.0003431932,0.00001994457,0.000112328,0.0004484188,0.000001159864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005040652,"about_ca_system_score_gemma":0.000185307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001236123,"about_ca_topic_score_gemma":0.00006182362,"domain_scores_codex":[0.9986113,0.0003202737,0.0004634227,0.0003485668,0.00003068178,0.000225731],"domain_scores_gemma":[0.9993488,0.00007333876,0.000165047,0.0003186792,0.00003181568,0.00006228802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001967186,0.0006818246,0.3886075,0.00712696,0.000643005,0.00006031983,0.000369776,0.0000024641,0.002305255,0.001184398,0.009379393,0.5894424],"study_design_scores_gemma":[0.0006003735,0.00005589471,0.001954114,0.001597994,0.0004358996,0.0001582895,0.0001331281,0.000009085309,0.00003320235,0.0003636486,0.9945012,0.0001571907],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003252098,0.9944498,0.0001011512,0.00006177975,0.001278473,0.0006158229,0.00004851879,0.000006854994,0.0001855161],"genre_scores_gemma":[0.001633326,0.9976463,0.00005037923,0.00005356577,0.00007061418,0.00003523087,0.0001977265,0.00001974486,0.0002930685],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9851218,"threshold_uncertainty_score":0.5695263,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}