{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":6,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":6,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"bf9b9aba68e8","filters":{"venue":"Fungal Biology and Biotechnology"}},"results":[{"id":"W2973379642","doi":"10.1186/s40694-019-0076-7","title":"Efficient marker free CRISPR/Cas9 genome editing for functional analysis of gene families in filamentous fungi","year":2019,"lang":"en","type":"article","venue":"Fungal Biology and Biotechnology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Danmarks Tekniske Universitet; Concordia University","keywords":"CRISPR; Genome editing; Gene knockout; Cas9; Biology; Plasmid; Genetics; Gene; Transformation (genetics); Computational biology; Marker gene; Genome","authors":[{"name":"Tim M. van Leeuwe","is_ca":false},{"name":"Mark Arentshorst","is_ca":false},{"name":"Tim Ernst","is_ca":false},{"name":"Ebru Alazi","is_ca":false},{"name":"Peter J. Punt","is_ca":false},{"name":"Arthur F. J. Ram","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004916068669664316,"gpt":0.2464804574381338,"spread":0.2415643887684695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000290937,0.0004881097,0.0004090507,0.0004106346,0.0002435062,0.0003759052,0.0004885617,0.0004006518,0.00144601],"category_scores_gemma":[0.0001856878,0.000237072,0.0004271383,0.0002703031,0.0002033634,0.0002082894,0.0002814391,0.0006476368,0.0007873999],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003175896,"about_ca_system_score_gemma":0.0002461385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005576903,"about_ca_topic_score_gemma":0.0007009483,"domain_scores_codex":[0.9996498,0.00004314695,0.00004942841,0.00009249409,0.0001314315,0.00003372461],"domain_scores_gemma":[0.9998475,0.00002889543,0.00004442685,0.00003110229,0.00002036989,0.00002756351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003257811,0.000009897686,0.0000697767,0.00003902303,0.000004256487,0.00005003235,0.000006825695,0.0001255031,0.9977624,0.0001111876,0.00005051584,0.001737913],"study_design_scores_gemma":[0.00001136012,0.00005512291,0.001116175,0.000007941057,0.00001482176,0.0002907097,0.00001032755,0.00249526,0.9920282,0.00008989275,0.003871292,0.000009006725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.6823704,0.002372822,0.3032605,0.0001681288,0.0001310944,0.0004153684,0.005288576,0.002380213,0.00361294],"genre_scores_gemma":[0.8866882,0.001174826,0.102492,0.00007962628,0.00001703508,0.0002239348,0.003667132,0.0002927013,0.005364599],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.00144601,"threshold_uncertainty_score":0.004837394,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2796863313","doi":"10.1186/s40694-018-0046-5","title":"Cinnamomum zeylanicum bark essential oil induces cell wall remodelling and spindle defects in Candida albicans","year":2018,"lang":"en","type":"article","venue":"Fungal Biology and Biotechnology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University; Regina Qu'Appelle Health Region; University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation; Faculty of Graduate Studies and Research, University of Regina; University of Regina; Brown University","keywords":"Cinnamomum zeylanicum; Bark (sound); Cinnamomum; Candida albicans; Biology; Essential oil; Traditional medicine; Microbiology; Botany; Medicine; Pathology; Ecology","authors":[{"name":"Zinnat Shahina","is_ca":true},{"name":"Amira M. El-Ganiny","is_ca":false},{"name":"Jessica Minion","is_ca":true},{"name":"Malcolm Whiteway","is_ca":true},{"name":"Taranum Sultana","is_ca":true},{"name":"Tanya E. S. Dahms","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01015192858999086,"gpt":0.2631568581000005,"spread":0.2530049295100096,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006373219,0.0003031872,0.0001952354,0.0002934534,0.0001177237,0.0002137328,0.0001442553,0.000272803,0.0008060852],"category_scores_gemma":[0.0001087986,0.0001127375,0.0002422388,0.0001994435,0.0001004496,0.00008987702,0.0001767015,0.0003181603,0.0001487613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001497666,"about_ca_system_score_gemma":0.0001509933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00203951,"about_ca_topic_score_gemma":0.002717749,"domain_scores_codex":[0.9999125,0.00001039492,0.00001150315,0.00001619337,0.00002368912,0.00002565992],"domain_scores_gemma":[0.9999366,0.00001092692,0.00001663534,0.000007678263,0.00001251252,0.00001562197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001198142,0.00002486254,0.0004370636,0.00002266503,0.000004259426,0.00009680698,0.00001312853,0.00001652372,0.9985722,0.00001045036,0.00001684125,0.000665318],"study_design_scores_gemma":[0.00002108025,0.000936434,0.05414991,0.00001512403,0.00003228449,0.0006564968,0.0001150218,0.000435841,0.9425105,0.00003668157,0.001083022,0.000007540617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984646,0.0005803131,0.0002200627,0.00003402347,0.000009631068,0.00001935608,0.0002493414,0.00001737947,0.0004052974],"genre_scores_gemma":[0.9978363,0.0003989562,0.0003928793,0.0000546326,0.000003265453,0.00001917532,0.0003275684,0.00000645715,0.0009608174],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00203951,"threshold_uncertainty_score":0.004055262,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2893226894","doi":"10.1186/s40694-018-0060-7","title":"A community-driven reconstruction of the Aspergillus niger metabolic network","year":2018,"lang":"en","type":"article","venue":"Fungal Biology and Biotechnology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"Novo Nordisk Fonden; Novo Nordisk; Stichting voor de Technische Wetenschappen; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Villum Fonden","keywords":"SBML; Computer science; Aspergillus niger; Flux balance analysis; Metabolic network; Experimental data; Software; Metabolic engineering; Data mining; Computational biology; Biochemical engineering; Biology; Gene; Biotechnology; Markup language; XML; Programming language; Engineering","authors":[{"name":"Julian Brandl","is_ca":false},{"name":"María Victoria Aguilar Pontes","is_ca":false},{"name":"Paul SchĂ¤Pe","is_ca":false},{"name":"Anders Noerregaard","is_ca":false},{"name":"Mikko Arvas","is_ca":false},{"name":"Arthur F. J. Ram","is_ca":false},{"name":"Vera Meyer","is_ca":false},{"name":"Adrian Tsang","is_ca":true},{"name":"Ronald P. de Vries","is_ca":false},{"name":"Mikael Rørdam Andersen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006447910474245026,"gpt":0.2168174278189424,"spread":0.2103695173446973,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004142474,0.0007887062,0.0005562964,0.001575709,0.0004349762,0.000957933,0.001051606,0.001212743,0.00277596],"category_scores_gemma":[0.001701331,0.0004680748,0.00158777,0.00129815,0.0003153347,0.0006456006,0.0008668272,0.0006802441,0.0006358514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008277384,"about_ca_system_score_gemma":0.001282608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01992369,"about_ca_topic_score_gemma":0.01553624,"domain_scores_codex":[0.9998043,0.00005151501,0.000008808908,0.00005897623,0.00004073761,0.00003561197],"domain_scores_gemma":[0.9994932,0.0002311388,0.00004477838,0.00005961476,0.0001029882,0.00006818804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009192514,0.00004122297,0.004252824,0.00009359386,0.00005335168,0.0001980384,0.0000484133,0.9832867,0.003405311,0.002107725,0.0007694563,0.005651334],"study_design_scores_gemma":[0.00001015609,0.000008704083,0.0003987856,0.000008702449,0.000008350081,0.0000195509,0.00002586153,0.9970422,0.0003585525,0.001339906,0.0007731144,0.000006002591],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5958464,0.0009549946,0.3738543,0.000838099,0.0001458353,0.0001628031,0.01447263,0.004366082,0.009358873],"genre_scores_gemma":[0.8246709,0.0005814935,0.1573175,0.00008290313,0.00002817156,0.0001934895,0.01496837,0.00035544,0.001801758],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01992369,"threshold_uncertainty_score":0.03961545,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3149485592","doi":"10.1186/s40694-021-00111-w","title":"Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing","year":2021,"lang":"en","type":"article","venue":"Fungal Biology and Biotechnology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Newfoundland and Labrador; Universiteit Leiden","keywords":"CRISPR; Penicillium roqueforti; Biology; Paecilomyces; Melanin; Genome editing; Mutant; Microbiology; Genetics; Penicillium; Botany; Gene","authors":[{"name":"Sjoerd J. Seekles","is_ca":false},{"name":"Pepijn Teunisse","is_ca":false},{"name":"Maarten Punt","is_ca":false},{"name":"Tom van den Brule","is_ca":false},{"name":"Jan Dijksterhuis","is_ca":false},{"name":"Jos Houbraken","is_ca":false},{"name":"Han A. B. Wösten","is_ca":false},{"name":"Arthur F. J. Ram","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01054363550662757,"gpt":0.2481489855412003,"spread":0.2376053500345728,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741774,0.0004529391,0.0002529547,0.0002785383,0.0001710722,0.0003768424,0.000333092,0.0003366251,0.0009918356],"category_scores_gemma":[0.0001782302,0.0001490247,0.0003195903,0.0002084643,0.0001558768,0.0001318512,0.0003102086,0.0006416074,0.0003687856],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002072302,"about_ca_system_score_gemma":0.0002049975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001029378,"about_ca_topic_score_gemma":0.001214853,"domain_scores_codex":[0.9997872,0.000030034,0.00003515743,0.00004199283,0.00007358396,0.00003216657],"domain_scores_gemma":[0.9998129,0.00002951874,0.0000699774,0.00003173944,0.00001922616,0.00003669781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003467458,0.00001230498,0.0001162716,0.00002375174,0.000003750116,0.00006071667,0.000008735802,0.00007898136,0.998903,0.00003820495,0.00002074641,0.0006989195],"study_design_scores_gemma":[0.000005438926,0.00009966174,0.003870747,0.000007140135,0.00001267523,0.0003595175,0.00002980594,0.0009955417,0.9926119,0.00003711288,0.001961514,0.000008859573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820631,0.0006098014,0.01314798,0.00008631371,0.00003649027,0.00009618216,0.001445055,0.0003064041,0.002208696],"genre_scores_gemma":[0.981887,0.0003583228,0.01081988,0.0000340437,0.000004307429,0.00008312108,0.002155768,0.00008428435,0.004573277],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001029378,"threshold_uncertainty_score":0.003317952,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4386374683","doi":"10.1186/s40694-023-00165-y","title":"CRISPR/Cas9 mediated gene editing of transcription factor ACE1 for enhanced cellulase production in thermophilic fungus Rasamsonia emersonii","year":2023,"lang":"en","type":"article","venue":"Fungal Biology and Biotechnology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"Danmarks Tekniske Universitet","keywords":"Cellulase; Xylanase; Biology; Gene; Biorefinery; Microbiology; Thermophile; CRISPR; Overproduction; Repressor; Biochemistry; Transcription factor; Enzyme; Biotechnology","authors":[{"name":"Varinder Singh","is_ca":false},{"name":"Yashika Raheja","is_ca":false},{"name":"Neha Basotra","is_ca":false},{"name":"Gaurav Sharma","is_ca":false},{"name":"Adrian Tsang","is_ca":true},{"name":"Bhupinder Singh Chadha","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01526873552725715,"gpt":0.2325900666896058,"spread":0.2173213311623487,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001899471,0.0005010045,0.0003458656,0.0002281642,0.0001806799,0.0004200311,0.0004065572,0.0003953381,0.001568594],"category_scores_gemma":[0.0001813626,0.0001624587,0.0003307084,0.0001920826,0.0002197123,0.0001633865,0.0003408784,0.0007133455,0.0004746575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002896067,"about_ca_system_score_gemma":0.0002429658,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001006369,"about_ca_topic_score_gemma":0.001323473,"domain_scores_codex":[0.9998243,0.00001788222,0.00002468883,0.00004951349,0.00005739777,0.00002620269],"domain_scores_gemma":[0.9998908,0.00002248337,0.00003850556,0.00001490032,0.00001268602,0.00002063664],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007818182,0.00002777166,0.000174822,0.00009054143,0.000009559301,0.0001923736,0.00003174968,0.0003307061,0.9962932,0.000262064,0.0001292777,0.002379764],"study_design_scores_gemma":[0.00003405862,0.0001323962,0.002445692,0.00002271339,0.00004989644,0.0004885985,0.0000487011,0.006978955,0.9795746,0.0001370522,0.01006837,0.00001895096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9392413,0.001728454,0.04644456,0.0002936278,0.0001791996,0.0002275604,0.002891224,0.00138446,0.00760952],"genre_scores_gemma":[0.9682873,0.0008785661,0.01965349,0.00008682509,0.00001173412,0.0001200735,0.002098106,0.0001379085,0.00872582],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001568594,"threshold_uncertainty_score":0.005247414,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410941154","doi":"10.1186/s40694-025-00200-0","title":"Indigenizing fungal biotechnology for planetary health: an opinion paper","year":2025,"lang":"en","type":"letter","venue":"Fungal Biology and Biotechnology","topic":"Plant and Biological Electrophysiology Studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Biotechnology; Biology; Astrobiology","authors":[{"name":"Rolando Perez","is_ca":false},{"name":"Maria Luisa Astolfi","is_ca":false},{"name":"Ulises J. Espinoza","is_ca":false},{"name":"Teal Brown Zimring","is_ca":false},{"name":"Keolu Fox","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02569247612224851,"gpt":0.253978215523589,"spread":0.2282857394013404,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005401772,0.000502539,0.0004356287,0.0005578864,0.002344818,0.006777203,0.001515507,0.009821204,0.007584725],"category_scores_gemma":[0.007662669,0.0001806555,0.0004288856,0.0007612493,0.006106732,0.008257903,0.002976706,0.009865406,0.001661393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005490745,"about_ca_system_score_gemma":0.005682508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006129624,"about_ca_topic_score_gemma":0.008606748,"domain_scores_codex":[0.9973052,0.000741657,0.0001124354,0.0004624651,0.0009082475,0.0004698877],"domain_scores_gemma":[0.9960098,0.001827046,0.0002722592,0.0001826653,0.001110485,0.0005976263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005121739,0.00004749318,0.0004201746,0.001033334,0.00002773755,0.0007174342,0.005840939,0.0001955841,0.001502877,0.2507103,0.6287801,0.1106729],"study_design_scores_gemma":[0.000004302412,0.00001366274,0.0001109122,0.0003167393,0.000008832043,0.0001386283,0.002054881,0.00008084709,0.0003298557,0.02016719,0.976766,0.000008002],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"editorial","genre_scores_codex":[0.001694441,0.1066318,0.001888,0.8292987,0.03386732,0.00002942395,0.00006512547,0.00002577631,0.02649956],"genre_scores_gemma":[0.1022463,0.2331806,0.004720359,0.5146591,0.0586423,0.00009254387,0.000175904,0.0001068541,0.08617598],"genre_candidate":"editorial","genre_consensus":null,"teacher_disagreement_score":0.009821204,"threshold_uncertainty_score":0.03983837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}