{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":442,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":442,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e8be0511551a","filters":{"venue":"G3 Genes Genomes Genetics"}},"results":[{"id":"W2727479110","doi":"10.1534/g3.117.041277","title":"Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":681,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Canadian Institute for Advanced Research; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"CRISPR; Computational biology; Genome; Genome editing; Computer science; Genetics; Biology; Gene","authors":[{"name":"Traver Hart","is_ca":false},{"name":"Amy H.Y. Tong","is_ca":true},{"name":"Katie Chan","is_ca":true},{"name":"Jolanda van Leeuwen","is_ca":true},{"name":"Ashwin Seetharaman","is_ca":true},{"name":"Michael Aregger","is_ca":true},{"name":"Megha Chandrashekhar","is_ca":true},{"name":"Nicole Hustedt","is_ca":true},{"name":"Sahil Seth","is_ca":false},{"name":"Avery J. C. Noonan","is_ca":true},{"name":"Andrea Habsid","is_ca":true},{"name":"Olga Sizova","is_ca":true},{"name":"L. Nedyalkova","is_ca":true},{"name":"Ryan Climie","is_ca":true},{"name":"Leanne Tworzyanski","is_ca":true},{"name":"Keith A. Lawson","is_ca":true},{"name":"Maria A. Sartori","is_ca":true},{"name":"Sabriyeh Alibeh","is_ca":true},{"name":"David Tieu","is_ca":true},{"name":"Sanna N. Masud","is_ca":true},{"name":"Patricia Mero","is_ca":true},{"name":"Alexander Weiß","is_ca":true},{"name":"Kevin R. Brown","is_ca":true},{"name":"Matej Ušaj","is_ca":true},{"name":"Maximilian Billmann","is_ca":false},{"name":"Mahfuzur Rahman","is_ca":false},{"name":"Michael Costanzo","is_ca":true},{"name":"Chad L. Myers","is_ca":false},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Daniel Durocher","is_ca":true},{"name":"Jason Moffat","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03263420924424068,"gpt":0.3325893142823756,"spread":0.2999551050381349,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003003853,0.001026802,0.00123286,0.001000808,0.0003983619,0.0008279537,0.001133966,0.0005703111,0.0008273314],"category_scores_gemma":[0.003158,0.0005277809,0.0005521786,0.0006836405,0.0003675387,0.0003723788,0.0008070085,0.0008657146,0.0004378633],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009431006,"about_ca_system_score_gemma":0.001071329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001450857,"about_ca_topic_score_gemma":0.003722333,"domain_scores_codex":[0.9975973,0.0004970639,0.0002912875,0.0004341319,0.0009628467,0.0002174958],"domain_scores_gemma":[0.9984347,0.0006106609,0.0002164457,0.0002210738,0.0003679123,0.0001490766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002624074,0.0002455449,0.002612142,0.0002159705,0.00009120595,0.0001515116,0.00005528762,0.02207226,0.9573731,0.0004376127,0.0002721539,0.01621081],"study_design_scores_gemma":[0.0000645019,0.001100335,0.005923619,0.0000198162,0.0001137368,0.0002429068,0.00005559065,0.03484283,0.9536403,0.0002074091,0.003741906,0.00004713824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7762485,0.0009841972,0.2119227,0.0001497667,0.00004198026,0.002078441,0.004410576,0.0022099,0.001953932],"genre_scores_gemma":[0.7174554,0.001525886,0.2695979,0.000158931,0.000007302782,0.00178098,0.007164205,0.0006166649,0.001692641],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003003853,"threshold_uncertainty_score":0.01588607,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2310742968","doi":"10.1534/g3.115.021667","title":"LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":481,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Canada Research Chairs; Genome Canada","keywords":"Imputation (statistics); Genotyping; Genotype; Missing data; Biology; Genomic selection; Genome-wide association study; Genome; Genomics; Computational biology; Genetics; Computer science; Single-nucleotide polymorphism; Gene; Machine learning","authors":[{"name":"Daniel Money","is_ca":true},{"name":"Kyle M. Gardner","is_ca":true},{"name":"Zoë Migicovsky","is_ca":true},{"name":"Heidi Schwaninger","is_ca":false},{"name":"Gan‐Yuan Zhong","is_ca":false},{"name":"Sean Myles","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02402387547798219,"gpt":0.2646507965306267,"spread":0.2406269210526445,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00664334,0.001903084,0.002396148,0.002491825,0.001440131,0.00280334,0.005732679,0.002343858,0.01511102],"category_scores_gemma":[0.01915838,0.002122251,0.002539179,0.003168706,0.0006880442,0.002595197,0.003706596,0.00349466,0.01396057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007052873,"about_ca_system_score_gemma":0.001777422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003745589,"about_ca_topic_score_gemma":0.006416261,"domain_scores_codex":[0.9969399,0.001173102,0.0001740978,0.0006941013,0.0008577221,0.0001610753],"domain_scores_gemma":[0.9939924,0.003305621,0.0006804789,0.001269651,0.0005516365,0.0002002572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001561427,0.0004799101,0.02614103,0.002221258,0.003549259,0.001113135,0.001112897,0.1430892,0.02091539,0.0238015,0.2918262,0.4841889],"study_design_scores_gemma":[0.0005494399,0.0002291084,0.01022708,0.0003117921,0.000487511,0.0008937158,0.0001271397,0.7734869,0.0189259,0.05461169,0.1397813,0.0003684941],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.00528751,0.0004101161,0.9193304,0.0002322402,0.000144432,0.00008027792,0.01066642,0.06260967,0.001238885],"genre_scores_gemma":[0.05053641,0.0006266264,0.8704209,0.0004774197,0.0001358196,0.0009862157,0.05191469,0.02037072,0.004531217],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01511102,"threshold_uncertainty_score":0.05055141,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3145751116","doi":"10.1534/g3.112.003830","title":"Large-Scale Screening for Targeted Knockouts in the <i>Caenorhabditis elegans</i> Genome","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":435,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Human Genome Research Institute; National Institutes of Health; Canadian Institutes of Health Research; Genome British Columbia; Genome Canada","keywords":"Biology; Genetics; Gene; Caenorhabditis elegans; Genome; Multicellular organism; Model organism; Computational biology","authors":[],"retraction":null,"screen_n_in":null,"score":{"opus":0.01496907933216421,"gpt":0.2452954796605849,"spread":0.2303264003284207,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001132177,0.0006666632,0.0006875451,0.0009174765,0.0006108301,0.0006229031,0.0008752038,0.0005536695,0.001166444],"category_scores_gemma":[0.0005619397,0.0004917125,0.0007907124,0.0004929517,0.0004521366,0.0002983451,0.0006685462,0.000980799,0.0009268665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006449002,"about_ca_system_score_gemma":0.0006930431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002977844,"about_ca_topic_score_gemma":0.007200865,"domain_scores_codex":[0.9994025,0.00006222984,0.00007341591,0.0001269808,0.0002805487,0.00005435195],"domain_scores_gemma":[0.9993749,0.0001923795,0.0001288857,0.0001120047,0.00008540975,0.0001063732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003640074,0.00003213107,0.0002756003,0.00006308098,0.00002293129,0.00007349372,0.0000148526,0.0001655895,0.9963418,0.0001642328,0.0003865019,0.002423388],"study_design_scores_gemma":[0.00008890148,0.0003923576,0.01444827,0.00005616044,0.0002176468,0.0007420001,0.00006004616,0.004837377,0.9606881,0.0002461379,0.0181762,0.00004700289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7699888,0.004758347,0.1828021,0.001083859,0.0003835669,0.002173335,0.02373033,0.006188844,0.008890794],"genre_scores_gemma":[0.738853,0.00799355,0.2094105,0.001203819,0.00008452712,0.001587008,0.02731626,0.001781405,0.01176997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002977844,"threshold_uncertainty_score":0.005987585,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2158485480","doi":"10.1534/g3.112.003202","title":"oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":301,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Genome Canada; Canadian Institutes of Health Research; National Institutes of Health; Michael Smith Health Research BC","keywords":"Opossum; Gene; Biology; DNA binding site; Computational biology; Genetics; Transcription factor; Motif (music); Promoter; Gene expression; Paleontology","authors":[{"name":"Andrew Tae-Jun Kwon","is_ca":true},{"name":"David J. Arenillas","is_ca":true},{"name":"Rebecca Worsley Hunt","is_ca":true},{"name":"Wyeth W. Wasserman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01409739961922303,"gpt":0.3037815560724281,"spread":0.2896841564532051,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001728838,0.001856744,0.001647398,0.001980688,0.0007501353,0.001299059,0.001667476,0.0006965445,0.01922419],"category_scores_gemma":[0.002064341,0.0007857498,0.00170251,0.001819059,0.0005288913,0.0007856162,0.001867114,0.001585248,0.004420839],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008429515,"about_ca_system_score_gemma":0.00106806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004192627,"about_ca_topic_score_gemma":0.009040826,"domain_scores_codex":[0.9993294,0.00005936842,0.00004004274,0.0003325806,0.0001615763,0.00007708444],"domain_scores_gemma":[0.999271,0.0002921555,0.000127411,0.0001869604,0.00005796245,0.00006438611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.006653895,0.0003586198,0.03597776,0.004303765,0.002668858,0.0009165506,0.00114115,0.009854201,0.6358405,0.006898097,0.1748914,0.1204952],"study_design_scores_gemma":[0.001282525,0.0007060792,0.1371462,0.0002856859,0.0012822,0.001709112,0.0004535835,0.1537698,0.4299865,0.01374368,0.2590636,0.0005710039],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.1605471,0.0009343672,0.2098214,0.000233665,0.000204109,0.0005944373,0.4463203,0.1763994,0.004945341],"genre_scores_gemma":[0.1831014,0.0004931577,0.3260571,0.000534185,0.00005984879,0.002868131,0.4499849,0.03166461,0.005236771],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01922419,"threshold_uncertainty_score":0.06431133,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157614639","doi":"10.1534/g3.114.011825","title":"Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":229,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Human Genome Research Institute; Agricultural Research Service; National Institute of General Medical Sciences; Canadian Institute for Advanced Research; U.S. Department of Agriculture; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Metagenomics; Genome; Shotgun; Biology; Contiguity; Computational biology; Shotgun sequencing; Contig; Evolutionary biology; Genetics; Gene; Ecology","authors":[{"name":"Joshua N. Burton","is_ca":false},{"name":"Ivan Liachko","is_ca":false},{"name":"Maitreya J. Dunham","is_ca":false},{"name":"Jay Shendure","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03039227776421693,"gpt":0.2284718688503875,"spread":0.1980795910861706,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001527653,0.0009628687,0.0005088891,0.002898735,0.0005552531,0.001266745,0.001218317,0.00101399,0.001925923],"category_scores_gemma":[0.005982224,0.0007898976,0.001204086,0.002503156,0.0004956628,0.00121475,0.001216521,0.001167753,0.0007443608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009084662,"about_ca_system_score_gemma":0.000640963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003041029,"about_ca_topic_score_gemma":0.002982857,"domain_scores_codex":[0.9994547,0.0001023797,0.00003641897,0.0001709359,0.000175565,0.00005992385],"domain_scores_gemma":[0.9981874,0.0007593721,0.0002189461,0.0004137385,0.0003330608,0.00008751954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001277492,0.0002504748,0.02637752,0.0007905392,0.0007514112,0.0007874948,0.001641109,0.1612748,0.658196,0.01573269,0.002480143,0.1304403],"study_design_scores_gemma":[0.00002716136,0.00005125122,0.01739315,0.00002520123,0.0000728909,0.0001670534,0.0001608401,0.833791,0.1389065,0.006310516,0.003013671,0.0000807939],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2203816,0.0003354468,0.7721114,0.0001149989,0.00004166459,0.00009710302,0.001286108,0.003629307,0.002002466],"genre_scores_gemma":[0.4884979,0.0002469351,0.5074656,0.00006955083,0.0000215541,0.0001614712,0.002306631,0.0005818479,0.0006484338],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003041029,"threshold_uncertainty_score":0.008079112,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168257805","doi":"10.1534/g3.112.004689","title":"A Discovery Resource of Rare Copy Number Variations in Individuals with Autism Spectrum Disorder","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":202,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland; SickKids Foundation; McMaster University; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"DPYD; Copy-number variation; Genetics; SNP array; Single-nucleotide polymorphism; Biology; SNP; Autism; Comparative genomic hybridization; Autism spectrum disorder; Candidate gene; Population; Gene; Genotype; Medicine; Genome; Pharmacogenetics; Psychiatry","authors":[{"name":"Aparna Prasad","is_ca":true},{"name":"Daniele Merico","is_ca":true},{"name":"Bhooma Thiruvahindrapuram","is_ca":true},{"name":"John Wei","is_ca":true},{"name":"Anath C. Lionel","is_ca":true},{"name":"Daisuke Sato","is_ca":true},{"name":"Jessica Rickaby","is_ca":true},{"name":"Chao Lu","is_ca":true},{"name":"Péter Szatmári","is_ca":true},{"name":"Wendy Roberts","is_ca":true},{"name":"Bridget A. Fernandez","is_ca":true},{"name":"Christian R. Marshall","is_ca":true},{"name":"Eli Hatchwell","is_ca":false},{"name":"Peggy S. Eis","is_ca":false},{"name":"Stephen W. Scherer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006545916166733189,"gpt":0.2179582720444251,"spread":0.2114123558776919,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007624254,0.0004430947,0.00102374,0.004552644,0.000622777,0.0006864056,0.0007329409,0.0004731881,0.003370584],"category_scores_gemma":[0.003046693,0.0002869903,0.0004573959,0.002991259,0.0001852443,0.0002900251,0.0009218907,0.0004190601,0.001169548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003365127,"about_ca_system_score_gemma":0.0006068291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002399102,"about_ca_topic_score_gemma":0.004146582,"domain_scores_codex":[0.9991867,0.0000759147,0.00008029164,0.0003843769,0.0002023327,0.00007030946],"domain_scores_gemma":[0.9983374,0.0007286817,0.0002907152,0.0002920986,0.0001514934,0.0001995449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002214412,0.000254796,0.3832437,0.00119013,0.0009642966,0.01428583,0.001316153,0.002288871,0.3206804,0.002385239,0.03415569,0.2370206],"study_design_scores_gemma":[0.0002315168,0.0004130965,0.8866761,0.0001328953,0.0007795579,0.01512689,0.0003764237,0.007273905,0.03284227,0.00284086,0.05316802,0.0001383179],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8734968,0.0049195,0.01386937,0.0007017474,0.0001083422,0.0002313475,0.0994677,0.002290981,0.004914232],"genre_scores_gemma":[0.8340868,0.00196317,0.03842014,0.0005393036,0.0001998867,0.000455367,0.1206283,0.0003533836,0.003353645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004552644,"threshold_uncertainty_score":0.01127571,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105106957","doi":"10.1534/g3.112.004044","title":"Comparative Genomics of a Plant-Pathogenic Fungus,<i>Pyrenophora tritici-repentis</i>, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":179,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Human Genome Research Institute; Joint Genome Institute; U.S. Department of Energy; Oregon State University; Office of Science; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Genome; Pyrenophora; Genetics; Transposable element; Gene; Comparative genomics; Population; Horizontal gene transfer; Genomics; Fungus; Effector; Botany","authors":[{"name":"Viola A. Manning","is_ca":false},{"name":"Iovanna Pandelova","is_ca":false},{"name":"Braham Dhillon","is_ca":true},{"name":"Larry Wilhelm","is_ca":false},{"name":"Stephen B. Goodwin","is_ca":false},{"name":"Aaron M. Berlin","is_ca":false},{"name":"Melania Figueroa","is_ca":false},{"name":"Michael Freitag","is_ca":false},{"name":"James K. Hane","is_ca":false},{"name":"Bernard Henrissat","is_ca":false},{"name":"Wade H Holman","is_ca":false},{"name":"Chinnappa D. Kodira","is_ca":false},{"name":"Joel Martin","is_ca":false},{"name":"Richard P. Oliver","is_ca":false},{"name":"Barbara Robbertse","is_ca":false},{"name":"Wendy Schackwitz","is_ca":false},{"name":"David C. Schwartz","is_ca":false},{"name":"Joseph W. Spatafora","is_ca":false},{"name":"B. Gillian Turgeon","is_ca":false},{"name":"Chandri Yandava","is_ca":false},{"name":"Sarah Young","is_ca":false},{"name":"Shiguo Zhou","is_ca":false},{"name":"Qiandong Zeng","is_ca":false},{"name":"Igor V. Grigoriev","is_ca":false},{"name":"Li‐Jun Ma","is_ca":false},{"name":"Lynda M. Ciuffetti","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02295034862223531,"gpt":0.2485967887790124,"spread":0.225646440156777,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008179459,0.0002399059,0.0002478075,0.000433771,0.0001555626,0.0002610482,0.0001377928,0.0002445133,0.000414024],"category_scores_gemma":[0.0001759414,0.0001128022,0.0003319697,0.0005020382,0.000125235,0.00015784,0.0002095068,0.0003486478,0.0001722352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002312137,"about_ca_system_score_gemma":0.0001151205,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001510627,"about_ca_topic_score_gemma":0.001938047,"domain_scores_codex":[0.999909,0.000008943942,0.000005636529,0.00003873041,0.00002012817,0.0000175586],"domain_scores_gemma":[0.9998651,0.00003966241,0.0000402898,0.000009951668,0.00001686887,0.00002808112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009551571,0.00001628549,0.002450506,0.00003579531,0.00001364558,0.0001088782,0.00006902122,0.000117184,0.994985,0.00004515889,0.00001603508,0.002047007],"study_design_scores_gemma":[0.00002321088,0.0007282696,0.7997357,0.00002610578,0.0001337084,0.003135641,0.0003740987,0.003035393,0.187634,0.0002030606,0.004941689,0.00002920014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974015,0.000295287,0.001023881,0.00001941478,0.00000227287,0.000007668939,0.0007614774,0.00002765439,0.0004608224],"genre_scores_gemma":[0.9913134,0.000376486,0.002504918,0.00004161286,0.000004730265,0.00001456638,0.00509946,0.00003233841,0.0006124504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001510627,"threshold_uncertainty_score":0.003003657,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2602530292","doi":"10.1534/g3.117.040220","title":"TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":164,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; Canadian Institute for Advanced Research; National Institutes of Health; National Science Foundation","keywords":"Budding yeast; Computer science; Saccharomyces cerevisiae; Key (lock); Scale (ratio); Computational biology; Data mining; Yeast; Biology; Genetics; Geography","authors":[{"name":"Matej Ušaj","is_ca":true},{"name":"Yizhao Tan","is_ca":true},{"name":"Wen Wang","is_ca":false},{"name":"Benjamin VanderSluis","is_ca":false},{"name":"Albert Zou","is_ca":true},{"name":"Chad L. Myers","is_ca":false},{"name":"Michael Costanzo","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02943001218032458,"gpt":0.3173720418549434,"spread":0.2879420296746188,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008219926,0.001903567,0.001253052,0.006262521,0.0007416967,0.002819129,0.002200489,0.0010299,0.04095048],"category_scores_gemma":[0.003075437,0.0008889092,0.0008673634,0.005674345,0.0003003542,0.001778536,0.002579239,0.001366666,0.02032789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005561074,"about_ca_system_score_gemma":0.001432413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003362866,"about_ca_topic_score_gemma":0.005194824,"domain_scores_codex":[0.9996598,0.00003974301,0.0000398938,0.00008264391,0.0001376551,0.00004029275],"domain_scores_gemma":[0.9989339,0.0003281781,0.0001418489,0.0002171954,0.0001811292,0.0001978202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007858528,0.0002058938,0.005459553,0.003536501,0.0004012419,0.0009057747,0.0005216106,0.007042757,0.03060587,0.01327968,0.8005898,0.1366655],"study_design_scores_gemma":[0.0004147521,0.00008519478,0.01116052,0.0004890678,0.0002385719,0.0009273563,0.000269882,0.03746966,0.02635807,0.0244045,0.8979393,0.0002432221],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.0104663,0.002885357,0.1307143,0.0005472535,0.0002535676,0.0002716838,0.5630981,0.2783165,0.01344677],"genre_scores_gemma":[0.04098639,0.003110234,0.1453252,0.0003258411,0.00009681206,0.001023109,0.7818711,0.02102478,0.006236527],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04095048,"threshold_uncertainty_score":0.136993,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2560154919","doi":"10.1534/g3.116.032797","title":"Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":163,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Cooperative State Research, Education, and Extension Service; Canada's Michael Smith Genome Sciences Centre; U.S. Department of Agriculture","keywords":"Biology; Genetics; Genome; Gene; Ustilago; Mating type; Gene family; Puccinia; Mobile genetic elements; Single-nucleotide polymorphism; Botany; Genotype","authors":[{"name":"Christina A. Cuomo","is_ca":false},{"name":"Guus Bakkeren","is_ca":true},{"name":"Hala Badr Khalil","is_ca":true},{"name":"Vinay Panwar","is_ca":true},{"name":"David L. Joly","is_ca":true},{"name":"Rob Linning","is_ca":true},{"name":"Sharadha Sakthikumar","is_ca":false},{"name":"Xiao Ping Song","is_ca":true},{"name":"Xian Adiconis","is_ca":false},{"name":"Jonathan M. Goldberg","is_ca":false},{"name":"Joshua Z. Levin","is_ca":false},{"name":"Sarah Young","is_ca":false},{"name":"Qiandong Zeng","is_ca":false},{"name":"Y. Anikster","is_ca":false},{"name":"Myron Bruce","is_ca":false},{"name":"Meinan Wang","is_ca":false},{"name":"Chuntao Yin","is_ca":false},{"name":"Brent McCallum","is_ca":true},{"name":"Les J. Szabo","is_ca":false},{"name":"Scot H. Hulbert","is_ca":false},{"name":"Xianming Chen","is_ca":false},{"name":"John P. Fellers","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05530425801110751,"gpt":0.2488873534622566,"spread":0.1935830954511491,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001020787,0.0001171263,0.00017471,0.0007564938,0.0001538967,0.0002642978,0.00009632067,0.0001490711,0.001067222],"category_scores_gemma":[0.0001897294,0.00007216427,0.0001865793,0.0005307505,0.000110316,0.0001074372,0.0001933711,0.0002093722,0.0001530624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000103549,"about_ca_system_score_gemma":0.00005212685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003774263,"about_ca_topic_score_gemma":0.0004822,"domain_scores_codex":[0.9999129,0.000009539772,0.00000536582,0.00004234793,0.00001606845,0.00001377885],"domain_scores_gemma":[0.9998577,0.00004538741,0.00003759218,0.000009740396,0.00001383401,0.00003581261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004268672,0.00002397715,0.06098168,0.00008059564,0.0000840081,0.0002052038,0.0003182784,0.0001407158,0.9274983,0.000164213,0.00009848658,0.009977685],"study_design_scores_gemma":[0.000007550807,0.0001057358,0.9819728,0.000006615694,0.00003713672,0.0005493416,0.0001328562,0.0005420221,0.01517179,0.00009476928,0.001374904,0.000004460146],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983214,0.000212775,0.0004235525,0.000009187054,0.000001822156,0.000002259164,0.0007600008,0.00001055799,0.000258459],"genre_scores_gemma":[0.9975744,0.00006769767,0.0003620849,0.00001163294,0.000002218517,0.000004661812,0.001733962,0.000005482448,0.0002378225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001067222,"threshold_uncertainty_score":0.003570199,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144939475","doi":"10.1534/g3.113.009431","title":"gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Computer science; Artificial intelligence; Grid; Image processing; Pattern recognition (psychology); Computer vision; Image (mathematics); Mathematics","authors":[{"name":"Omar Wagih","is_ca":true},{"name":"Leopold Parts","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01896410936872326,"gpt":0.2964857720989345,"spread":0.2775216627302112,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006116732,0.003558292,0.00358808,0.009338586,0.001157882,0.003938709,0.0054825,0.002548513,0.03116522],"category_scores_gemma":[0.01819959,0.003550385,0.002841107,0.004140512,0.001360693,0.00268196,0.003665615,0.005721229,0.03013341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00133461,"about_ca_system_score_gemma":0.001467819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001856186,"about_ca_topic_score_gemma":0.003458027,"domain_scores_codex":[0.9946322,0.0008294195,0.0006013698,0.001421347,0.002190464,0.0003251078],"domain_scores_gemma":[0.9872184,0.006266966,0.002123052,0.002415214,0.00156217,0.0004141909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001246184,0.0002853569,0.007555051,0.004748041,0.0008912145,0.0007766695,0.001103496,0.007155298,0.3056265,0.007573829,0.2441702,0.4188682],"study_design_scores_gemma":[0.0003575713,0.0003163975,0.02127227,0.000675159,0.0003893036,0.003628873,0.0003349606,0.2001643,0.541967,0.0112196,0.2184871,0.00118744],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.006673683,0.0009126525,0.7542428,0.00024527,0.0002880206,0.0002988894,0.0112572,0.2240779,0.002003579],"genre_scores_gemma":[0.01543119,0.0005725426,0.9179301,0.0002515374,0.00008517718,0.001273228,0.008548683,0.0534755,0.002432094],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03116522,"threshold_uncertainty_score":0.104258,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141218860","doi":"10.1534/g3.114.011023","title":"Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"National Human Genome Research Institute; Canada Research Chairs","keywords":"Genotyping; DNA sequencing; Computational biology; Biology; Genetics; Single-nucleotide polymorphism; Genotype; Population; SNP genotyping; DNA; Gene","authors":[{"name":"Kyle M. Gardner","is_ca":true},{"name":"Patrick J. Brown","is_ca":false},{"name":"Thomas F. Cooke","is_ca":false},{"name":"Scott Cann","is_ca":true},{"name":"Fabrizio Costa","is_ca":false},{"name":"Carlos D. Bustamante","is_ca":false},{"name":"Riccardo Velasco","is_ca":false},{"name":"Michela Troggio","is_ca":false},{"name":"Sean Myles","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04260383816252307,"gpt":0.2461068173832469,"spread":0.2035029792207239,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00249454,0.0006191956,0.0009299354,0.001234709,0.0005796988,0.001704554,0.0006736777,0.0008819137,0.0009808542],"category_scores_gemma":[0.00187569,0.0005703208,0.0009376621,0.001012213,0.0003308554,0.0007596351,0.001047479,0.001144337,0.0008136085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006245113,"about_ca_system_score_gemma":0.0007571233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002164519,"about_ca_topic_score_gemma":0.005064329,"domain_scores_codex":[0.9986078,0.0002801362,0.0001112106,0.0003770058,0.0005428132,0.00008099157],"domain_scores_gemma":[0.9990389,0.0004495278,0.0001134708,0.0001261446,0.0001796881,0.00009217735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002686243,0.0001197597,0.009819711,0.0005734419,0.000193639,0.0004469662,0.0004192623,0.008685593,0.8402394,0.003936754,0.003017973,0.1322789],"study_design_scores_gemma":[0.0003009627,0.0007809325,0.1177529,0.0003787609,0.0005232301,0.001905967,0.0005571179,0.1854458,0.5552835,0.0179028,0.1186566,0.0005114615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3066283,0.004833749,0.6678193,0.000824088,0.0003387948,0.0006333155,0.007639394,0.005637412,0.005645695],"genre_scores_gemma":[0.1634775,0.001729331,0.8233891,0.0004500241,0.00006653611,0.0002780348,0.007955778,0.0004709448,0.002182676],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00249454,"threshold_uncertainty_score":0.01319259,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2785457829","doi":"10.1534/g3.118.200053","title":"Genomic Predictions and Genome-Wide Association Study of Resistance Against <i>Piscirickettsia salmonis</i> in Coho Salmon ( <i>Oncorhynchus kisutch</i> ) Using ddRAD Sequencing","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Ministerio de Economía, Fomento y Turismo, Chile; Genome Canada; Universidad de Chile; Government of Canada; Genome British Columbia; Newton Fund","keywords":"Biology; Genotyping; Genetics; Single-nucleotide polymorphism; Genome; Population; Oncorhynchus; Genome-wide association study; Genotype; Gene; Fishery; Fish <Actinopterygii>","authors":[{"name":"Agustin Barría","is_ca":false},{"name":"Kris A. Christensen","is_ca":true},{"name":"Grazyella Yoshida","is_ca":false},{"name":"Katharina Correa","is_ca":false},{"name":"Ana Jedlicki","is_ca":false},{"name":"Jean P. Lhorente","is_ca":false},{"name":"William S. Davidson","is_ca":true},{"name":"José M. Yáñez","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01613099934648582,"gpt":0.2400982079686214,"spread":0.2239672086221355,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000495322,0.0002727559,0.0002074696,0.0004113714,0.0002280398,0.0002109911,0.000162933,0.0002001419,0.0009308317],"category_scores_gemma":[0.0005168811,0.0001070468,0.0004236026,0.0005283444,0.000158435,0.0000583412,0.0001855947,0.0002574,0.00008413151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002452797,"about_ca_system_score_gemma":0.0002618977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01059684,"about_ca_topic_score_gemma":0.01970369,"domain_scores_codex":[0.9997807,0.00005225729,0.00001371973,0.000101308,0.00003004068,0.00002201821],"domain_scores_gemma":[0.9996438,0.0001568365,0.00008182978,0.00002642867,0.00004378776,0.00004728209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008283888,0.0001100915,0.8694487,0.0000785306,0.0008097937,0.0003038141,0.0002321583,0.003174938,0.1111988,0.0002085649,0.0003306341,0.01327556],"study_design_scores_gemma":[0.00003017329,0.000144764,0.9901977,0.000007399644,0.0001991808,0.00009315857,0.0001147907,0.006994381,0.001757773,0.00005417975,0.0003990157,0.000007657884],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986206,0.00004771748,0.0008683292,0.00001625372,0.000002076924,0.000007532014,0.0003212388,0.00000798263,0.0001082447],"genre_scores_gemma":[0.9974216,0.00003250932,0.001467838,0.00001751243,0.00000303245,0.00001469413,0.0008775149,0.000004881212,0.0001603407],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01059684,"threshold_uncertainty_score":0.0210703,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2901672380","doi":"10.1534/g3.118.200778","title":"CRISPR/Cas9 Methodology for the Generation of Knockout Deletions in <i>Caenorhabditis elegans</i>","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"CRISPR; Biology; ORFS; Genetics; Cas9; Caenorhabditis elegans; Gene; Computational biology; Genome; Null allele; Open reading frame; Allele","authors":[{"name":"Vinci Au","is_ca":false},{"name":"Erica Li-Leger","is_ca":false},{"name":"Greta Raymant","is_ca":false},{"name":"Stéphane Flibotte","is_ca":false},{"name":"George Chen","is_ca":false},{"name":"Kiana Martin","is_ca":false},{"name":"Lisa Fernando","is_ca":false},{"name":"Claudia Doell","is_ca":false},{"name":"Federico I. Rosell","is_ca":true},{"name":"Su Wang","is_ca":false},{"name":"Mark L. Edgley","is_ca":false},{"name":"Ann E. Rougvie","is_ca":false},{"name":"Harald Hutter","is_ca":true},{"name":"Donald G. Moerman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05917931918555822,"gpt":0.3652300367463614,"spread":0.3060507175608032,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007894724,0.0005550031,0.0005000798,0.0007394169,0.0008949473,0.0005425078,0.001043724,0.000401913,0.003711352],"category_scores_gemma":[0.0005107379,0.0005327468,0.0005295274,0.0005308368,0.0004290604,0.0003143277,0.0005866754,0.001377416,0.003240942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004272839,"about_ca_system_score_gemma":0.0006954767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001373547,"about_ca_topic_score_gemma":0.00302752,"domain_scores_codex":[0.9992311,0.00009110812,0.0001226077,0.0002094942,0.0002811868,0.00006449625],"domain_scores_gemma":[0.9996141,0.00005767429,0.00007582335,0.0001321834,0.00007963675,0.0000405717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003533409,0.0000224484,0.0001013749,0.00008797619,0.000008216813,0.0001035439,0.00003519392,0.0001688203,0.9924275,0.0005429368,0.0009260304,0.00554052],"study_design_scores_gemma":[0.0000143289,0.0000905947,0.001024283,0.00003192167,0.00001967545,0.0004283254,0.00001397283,0.001329209,0.9689123,0.00018491,0.02792157,0.00002899101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1575831,0.001536531,0.8017845,0.0004428889,0.0004708372,0.002708887,0.01127795,0.01192491,0.01227046],"genre_scores_gemma":[0.3642072,0.00262416,0.5942468,0.0003652608,0.00006177002,0.002998498,0.01690696,0.002708167,0.01588117],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003711352,"threshold_uncertainty_score":0.01241571,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3119786698","doi":"10.1093/g3journal/jkaa050","title":"The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment","year":2021,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Agricultural Research Service; National Corn Growers Association; University of Georgia; U.S. Department of Agriculture","keywords":"Biology; Gene–environment interaction; Genetic architecture; Trait; Quantitative trait locus; Dominance (genetics); Hybrid; Variance (accounting); Environmental data; Quantitative genetics; Genetic variation; Genotype; Ecology; Genetics; Agronomy; Computer science; Gene","authors":[{"name":"Anna R Rogers","is_ca":false},{"name":"Jeffrey C. Dunne","is_ca":false},{"name":"M. Cinta Romay","is_ca":false},{"name":"Martin Bohn","is_ca":false},{"name":"Edward S. Buckler","is_ca":false},{"name":"Ignacio A. Ciampitti","is_ca":false},{"name":"Jode W. Edwards","is_ca":false},{"name":"David Ertl","is_ca":false},{"name":"Sherry Flint-García","is_ca":false},{"name":"Michael A. Gore","is_ca":false},{"name":"Christopher Graham","is_ca":false},{"name":"Candice N. Hirsch","is_ca":false},{"name":"Elizabeth E. Hood","is_ca":false},{"name":"David C. Hooker","is_ca":true},{"name":"J. Knoll","is_ca":false},{"name":"Elizabeth C. Lee","is_ca":true},{"name":"Aaron J. Lorenz","is_ca":false},{"name":"Jonathan P. Lynch","is_ca":false},{"name":"John McKay","is_ca":false},{"name":"Stephen P. Moose","is_ca":false},{"name":"Seth C. Murray","is_ca":false},{"name":"Rebecca Nelson","is_ca":false},{"name":"Torbert Rocheford","is_ca":false},{"name":"James C. Schnable","is_ca":false},{"name":"Patrick S. Schnable","is_ca":false},{"name":"Rajandeep S. Sekhon","is_ca":false},{"name":"Maninder P. Singh","is_ca":false},{"name":"Margaret E. Smith","is_ca":false},{"name":"Nathan M. Springer","is_ca":false},{"name":"Kurt D. Thelen","is_ca":false},{"name":"Peter R. Thomison","is_ca":false},{"name":"Addie Thompson","is_ca":false},{"name":"Mitch Tuinstra","is_ca":false},{"name":"Jason G. Wallace","is_ca":false},{"name":"Randall J. Wisser","is_ca":false},{"name":"Wenwei Xu","is_ca":false},{"name":"A. R. Gilmour","is_ca":false},{"name":"Shawn M. Kaeppler","is_ca":false},{"name":"Natalia de León","is_ca":false},{"name":"James B. Holland","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0115080770598522,"gpt":0.2382940346061256,"spread":0.2267859575462734,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007144598,0.0003392955,0.0004844389,0.0005342659,0.0007818923,0.0005611136,0.0006894335,0.0004240858,0.0003401517],"category_scores_gemma":[0.004360711,0.0002711859,0.0006527624,0.0007442041,0.0009996017,0.0004148425,0.0008147252,0.0004804239,0.0001062966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001388928,"about_ca_system_score_gemma":0.0009074875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01998879,"about_ca_topic_score_gemma":0.04379348,"domain_scores_codex":[0.9958097,0.002444124,0.00009651321,0.0009773189,0.0004657001,0.0002066865],"domain_scores_gemma":[0.9927956,0.003944866,0.0009339842,0.001636869,0.0003044889,0.0003841174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005984013,0.001506781,0.5638283,0.00009899769,0.001593301,0.000541642,0.004048214,0.01293206,0.3749625,0.001845935,0.0006837932,0.03197447],"study_design_scores_gemma":[0.00006722161,0.0003586604,0.9794074,0.000004923273,0.0002077976,0.00007010483,0.0002751548,0.01205163,0.006467091,0.0003199681,0.0007284496,0.00004157878],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990151,0.00001266343,0.0007224031,0.00001284754,6.598181e-7,0.000007310967,0.0001103378,0.00001592154,0.0001027789],"genre_scores_gemma":[0.9977621,0.0000157441,0.001485182,0.00001994268,0.000002151995,0.00003721756,0.0004797545,0.00002682066,0.0001711482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01998879,"threshold_uncertainty_score":0.03974485,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034377271","doi":"10.1534/g3.113.007807","title":"Increased Genomic Prediction Accuracy in Wheat Breeding Through Spatial Adjustment of Field Trial Data","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Genomic selection; Selection (genetic algorithm); Genome; Genotyping; Kernel (algebra); Genomics; Plant breeding; Single-nucleotide polymorphism; Computational biology; Genetics; Genotype; Computer science; Mathematics; Artificial intelligence; Agronomy; Gene","authors":[{"name":"Bettina Lado","is_ca":false},{"name":"Iván Matus","is_ca":false},{"name":"Alejandra Rodríguez","is_ca":false},{"name":"Luis Inostroza","is_ca":false},{"name":"Jesse Poland","is_ca":false},{"name":"François Belzile","is_ca":true},{"name":"Alejandro del Pozo","is_ca":false},{"name":"Martín Quincke","is_ca":false},{"name":"Marina Castro","is_ca":false},{"name":"Jarislav von Zitzewitz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03170410415421518,"gpt":0.2709249562023101,"spread":0.2392208520480949,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01473293,0.0006874164,0.001052003,0.000868283,0.0003384021,0.0008456869,0.0009136451,0.0007148315,0.0005598678],"category_scores_gemma":[0.02703517,0.0003918538,0.0006956195,0.001140989,0.0004277568,0.001119687,0.0009700819,0.0008870398,0.0002880764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000395122,"about_ca_system_score_gemma":0.0005118516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005475347,"about_ca_topic_score_gemma":0.008020932,"domain_scores_codex":[0.9931465,0.004641286,0.0003416965,0.001424455,0.000320052,0.0001260231],"domain_scores_gemma":[0.9776437,0.01590342,0.00138449,0.003397079,0.001466294,0.0002050749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002076377,0.0005360785,0.2426977,0.0002348965,0.001329899,0.0003221378,0.0004369991,0.4539544,0.02215152,0.0008614954,0.001942184,0.2734562],"study_design_scores_gemma":[0.0000969325,0.0004329188,0.07727567,0.00002949591,0.00019642,0.0001329282,0.000111347,0.9118664,0.006867306,0.001619585,0.001307878,0.00006312988],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7322564,0.0008229678,0.2625794,0.0002684269,0.00006619738,0.0001035794,0.0008091101,0.002210067,0.0008837992],"genre_scores_gemma":[0.928716,0.00008539314,0.06923768,0.0000951792,0.00001899754,0.00008573668,0.001314047,0.0001341449,0.0003127849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01473293,"threshold_uncertainty_score":0.07791609,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005535661","doi":"10.1534/g3.112.002659","title":"Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Sunflower and Safflower Cultivation","field":"Agricultural and Biological Sciences","cited_by":100,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Georgia Research Alliance; Genome Canada; Emory University; National Science Foundation","keywords":"Biology; Locus (genetics); Genome; Genetics; Gene mapping; Genotyping; Genetic linkage; Identity by descent; Helianthus annuus; Association mapping; Helianthus; Computational biology; Evolutionary biology; Genotype; Sunflower; Chromosome; Gene; Haplotype; Single-nucleotide polymorphism","authors":[{"name":"John Bowers","is_ca":false},{"name":"Eleni Bachlava","is_ca":false},{"name":"Robert L. Brunick","is_ca":false},{"name":"Loren H. Rieseberg","is_ca":true},{"name":"Steven J. Knapp","is_ca":false},{"name":"John M. Burke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02632033004013954,"gpt":0.2190151399667714,"spread":0.1926948099266319,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006357945,0.0006565755,0.0006451255,0.0009634698,0.0003633864,0.0003237749,0.0006153273,0.0003939237,0.001773838],"category_scores_gemma":[0.0004268688,0.0003479031,0.0009083776,0.0005570576,0.0001567161,0.0003117735,0.0005564762,0.0009828832,0.0004793514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005188962,"about_ca_system_score_gemma":0.0007011042,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002077009,"about_ca_topic_score_gemma":0.004668022,"domain_scores_codex":[0.9996744,0.00003754782,0.00002756405,0.0001328241,0.00008347414,0.00004427743],"domain_scores_gemma":[0.9996929,0.00007411761,0.00007372649,0.00004604421,0.00004032396,0.00007292748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002994146,0.0001484354,0.003310571,0.0001013163,0.00009512288,0.0003324484,0.00007345578,0.001806712,0.9518951,0.0006907256,0.0001288779,0.04111778],"study_design_scores_gemma":[0.0004241117,0.002193666,0.175574,0.0001136308,0.0006541991,0.002231282,0.0001270904,0.0256808,0.7676373,0.002298258,0.0229127,0.0001528615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8021728,0.0005977505,0.1918326,0.000094512,0.00006986146,0.0003642605,0.001359908,0.001013806,0.002494379],"genre_scores_gemma":[0.5677309,0.0009153653,0.420425,0.00007986277,0.00003237169,0.0003955253,0.007045513,0.0002294928,0.003145997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002077009,"threshold_uncertainty_score":0.00593406,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977388088","doi":"10.1534/g3.111.000489","title":"Mixed Model Association Mapping for Fusarium Head Blight Resistance in Tunisian-Derived Durum Wheat Populations","year":2011,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"North Dakota State University; U.S. Department of Agriculture","keywords":"Biology; Quantitative trait locus; Fusarium; Chromosome; Linkage disequilibrium; Association mapping; Common wheat; Cultivar; Resistance (ecology); Genetics; Genotype; Agronomy; Gene; Haplotype; Single-nucleotide polymorphism","authors":[{"name":"Farhad Ghavami","is_ca":false},{"name":"Elias M. Elias","is_ca":false},{"name":"Sujan Mamidi","is_ca":false},{"name":"Omid Ansari","is_ca":false},{"name":"Mehdi Sargolzaei","is_ca":true},{"name":"Tika B. Adhikari","is_ca":false},{"name":"Mohamed Mergoum","is_ca":false},{"name":"Shahryar F. Kianian","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09063721021908926,"gpt":0.2551864515155348,"spread":0.1645492412964455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003618216,0.0005030583,0.0005018918,0.0008671733,0.0004266988,0.0007069925,0.0007262508,0.0002263839,0.001608483],"category_scores_gemma":[0.003474405,0.0002878524,0.0008930929,0.0006352757,0.0002060858,0.0002422015,0.0005302199,0.0004177353,0.0001546079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007347052,"about_ca_system_score_gemma":0.0005774566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01469137,"about_ca_topic_score_gemma":0.02317902,"domain_scores_codex":[0.9987526,0.0007449143,0.0000493914,0.0003273421,0.00006424466,0.00006149134],"domain_scores_gemma":[0.99873,0.0008493815,0.0001367106,0.0001027836,0.0001143284,0.00006681345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004381971,0.0008785947,0.461326,0.0003928787,0.008048327,0.001496971,0.001652567,0.1519736,0.04753835,0.01073906,0.002770312,0.3088014],"study_design_scores_gemma":[0.0003430031,0.0003891404,0.2086597,0.00004128049,0.0008266686,0.0002831095,0.0003098865,0.7773248,0.002844655,0.005319416,0.003596317,0.00006197928],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9085911,0.0005732866,0.0890952,0.0002083716,0.00002952481,0.00005763631,0.0006444801,0.000233074,0.0005672328],"genre_scores_gemma":[0.9557807,0.0001380818,0.0411457,0.00004480892,0.00001630359,0.0001195185,0.001354937,0.00004823409,0.001351714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01469137,"threshold_uncertainty_score":0.02921176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2094067639","doi":"10.1534/g3.112.003400","title":"Functional Analysis With a Barcoder Yeast Gene Overexpression System","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Human Genome Research Institute; University of Toronto","keywords":"Open reading frame; Computational biology; Genetics; Biology; Gene; Genome; Saccharomyces cerevisiae; Barcode; Functional genomics; Plasmid; Yeast; DNA microarray; Genomics; Gene expression; Computer science","authors":[{"name":"Alison C. Douglas","is_ca":true},{"name":"Andrew Smith","is_ca":true},{"name":"Sara Sharifpoor","is_ca":true},{"name":"Zhun Yan","is_ca":true},{"name":"Tanja Durbic","is_ca":true},{"name":"Lawrence E. Heisler","is_ca":true},{"name":"Anna Y. Lee","is_ca":true},{"name":"Owen Ryan","is_ca":true},{"name":"Hendrikje Göttert","is_ca":true},{"name":"Anu Surendra","is_ca":true},{"name":"Dewald van Dyk","is_ca":true},{"name":"Guri Giaever","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Corey Nislow","is_ca":true},{"name":"Brenda Andrews","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01620219666820645,"gpt":0.2446556468276645,"spread":0.228453450159458,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007323805,0.001163768,0.0008830525,0.0008256626,0.0004272592,0.0006355164,0.0008822751,0.0006316755,0.001687184],"category_scores_gemma":[0.0005295875,0.000512024,0.0007902895,0.0007757243,0.0003650535,0.0004962138,0.0008382438,0.001397718,0.002070787],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006290214,"about_ca_system_score_gemma":0.0004929044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001216374,"about_ca_topic_score_gemma":0.001768927,"domain_scores_codex":[0.9990514,0.0001117738,0.0001172066,0.0002217177,0.0004137281,0.00008423002],"domain_scores_gemma":[0.9994116,0.0001402281,0.0001245511,0.0001146994,0.0001301802,0.00007876261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003518125,0.00001978957,0.00007233761,0.00002448675,0.000006208658,0.0000208829,0.000009461575,0.000106915,0.9985515,0.00008787603,0.00006682643,0.0009984148],"study_design_scores_gemma":[0.00001375838,0.0001166531,0.001208561,0.000005112652,0.00001918655,0.0001396927,0.00001117415,0.002493638,0.9925888,0.00006054023,0.003324917,0.00001803732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5512086,0.0008054716,0.421091,0.000543237,0.0001702552,0.001002448,0.01655626,0.005369373,0.003253417],"genre_scores_gemma":[0.5659049,0.001997771,0.3850064,0.0004210482,0.00006999277,0.001646621,0.0325637,0.001916496,0.01047312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001687184,"threshold_uncertainty_score":0.005644143,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120542866","doi":"10.1534/g3.115.017830","title":"CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in<i>Saccharomyces cerevisiae</i>","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Saccharomyces cerevisiae; Protein subcellular localization prediction; Proteome; Biology; Computational biology; Yeast; Subcellular localization; Proteomics; Genetics; Gene","authors":[{"name":"Judice L.Y. Koh","is_ca":true},{"name":"Yolanda Chong","is_ca":true},{"name":"Helena Friesen","is_ca":true},{"name":"Alan M Moses","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Jason Moffat","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01441146631423223,"gpt":0.2633836996257339,"spread":0.2489722333115017,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006743739,0.002658274,0.001635058,0.005832798,0.0007256109,0.001979008,0.001964058,0.001024593,0.006012885],"category_scores_gemma":[0.002265594,0.0009138388,0.0009950034,0.009208338,0.0003207998,0.001618943,0.001786838,0.001136045,0.007108591],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000756581,"about_ca_system_score_gemma":0.002163153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004827765,"about_ca_topic_score_gemma":0.0067054,"domain_scores_codex":[0.9994987,0.00004441428,0.0001114237,0.0001519686,0.0001436355,0.00004978339],"domain_scores_gemma":[0.9988507,0.0001634252,0.0003380721,0.000229995,0.0002182254,0.0001995476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00482118,0.0004297949,0.0379496,0.01189591,0.00144656,0.00275768,0.0007768784,0.008588545,0.1222572,0.007490273,0.6373844,0.164202],"study_design_scores_gemma":[0.0008868265,0.0004228516,0.08609172,0.0007841876,0.0008365071,0.002914214,0.0004431045,0.02059108,0.06278203,0.009289538,0.8145383,0.0004197033],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.02262663,0.001647119,0.0130239,0.0000909966,0.00005268061,0.000147479,0.9342313,0.02569528,0.002484534],"genre_scores_gemma":[0.01430713,0.0007678221,0.01265659,0.00004715283,0.00000969371,0.0002163931,0.970715,0.0009313198,0.0003488013],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.006012885,"threshold_uncertainty_score":0.02011514,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2300170747","doi":"10.1534/g3.115.025957","title":"Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects","year":2016,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Epistasis; Heritability; Additive model; Biology; Additive genetic effects; Genetic gain; Genetic model; Genetic architecture; Statistics; Pairwise comparison; Genetics; Evolutionary biology; Quantitative trait locus; Genetic variation; Mathematics","authors":[{"name":"Omnia Gamal El‐Dien","is_ca":true},{"name":"Blaise Ratcliffe","is_ca":true},{"name":"Jaroslav Klápště","is_ca":true},{"name":"Ilga Porth","is_ca":true},{"name":"Charles Chen","is_ca":false},{"name":"Yousry A. El‐Kassaby","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02146886465745951,"gpt":0.2988900234391085,"spread":0.277421158781649,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007936663,0.0003766961,0.0002014009,0.0003669765,0.0002146596,0.0003487444,0.0007816445,0.0001817056,0.002879407],"category_scores_gemma":[0.003037295,0.0001993817,0.0003785558,0.0003354879,0.0001573818,0.0002699647,0.0002922662,0.0003131593,0.0003963286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005656578,"about_ca_system_score_gemma":0.001323816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03509248,"about_ca_topic_score_gemma":0.06269803,"domain_scores_codex":[0.9995531,0.0001718114,0.00002183902,0.0001390959,0.0000787257,0.00003541674],"domain_scores_gemma":[0.9992831,0.0003220152,0.0000809545,0.00008776389,0.0001944451,0.00003169142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006284726,0.0004260272,0.1669051,0.00021866,0.0005121581,0.0008986088,0.0008133369,0.2894037,0.06847814,0.025599,0.00431736,0.4417995],"study_design_scores_gemma":[0.00003310895,0.0001625154,0.03568498,0.00001357317,0.00003989709,0.0001663218,0.0001059473,0.9450728,0.01109494,0.004107362,0.003485464,0.0000332193],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2755587,0.00003218923,0.7185586,0.00007511614,0.0000186063,0.00009169019,0.001316407,0.002572853,0.001775772],"genre_scores_gemma":[0.6843562,0.00002339234,0.312171,0.00002602529,0.000004496923,0.0001257587,0.001743037,0.0001400622,0.001410148],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03509248,"threshold_uncertainty_score":0.06977642,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148099207","doi":"10.1534/g3.113.009365","title":"The Dynamics of Diverse Segmental Amplifications in Populations of<i>Saccharomyces cerevisiae</i>Adapting to Strong Selection","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Science Foundation; National Cancer Institute; National Human Genome Research Institute; National Institute of General Medical Sciences; Canadian Institute for Advanced Research; National Institute on Aging","keywords":"Biology; Genetics; Adaptation (eye); Saccharomyces cerevisiae; Experimental evolution; Fixation (population genetics); Evolutionary dynamics; Gene; Evolutionary biology; Selection (genetic algorithm); Genome; Population; Natural selection","authors":[{"name":"Célia Payen","is_ca":false},{"name":"Sara C. Di Rienzi","is_ca":false},{"name":"Giang T. Ong","is_ca":false},{"name":"Jamie L. Pogachar","is_ca":false},{"name":"Joseph C. Sanchez","is_ca":false},{"name":"Anna B. Sunshine","is_ca":false},{"name":"M. K. Raghuraman","is_ca":false},{"name":"Bonita J. Brewer","is_ca":false},{"name":"Maitreya J. Dunham","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01775900809809572,"gpt":0.2686831519332959,"spread":0.2509241438352002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002596591,0.0001164647,0.0001638487,0.0002607887,0.0001992352,0.0003831784,0.0002191286,0.0001934126,0.0003192967],"category_scores_gemma":[0.0005878609,0.0001272603,0.0001515989,0.000163627,0.0003155632,0.0001623531,0.0003387055,0.0002583611,0.00009046274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003959959,"about_ca_system_score_gemma":0.0001812887,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001005567,"about_ca_topic_score_gemma":0.001465659,"domain_scores_codex":[0.9998982,0.00001994592,0.000006955278,0.0000317725,0.00002354657,0.00001951882],"domain_scores_gemma":[0.9996648,0.0000964804,0.00007573375,0.00004211577,0.0000699012,0.00005087604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001604198,0.00003114819,0.02323835,0.0000288763,0.00003731166,0.000114564,0.0002269417,0.003423071,0.9640566,0.0005223149,0.00005134558,0.008109039],"study_design_scores_gemma":[0.00007054298,0.001253747,0.5672794,0.00002397949,0.0001826069,0.001177051,0.001133432,0.06062328,0.3627229,0.002438018,0.002996429,0.00009858535],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993494,0.00003064368,0.0004510242,0.00000566684,5.313526e-7,0.00000248685,0.00001059708,0.000006823017,0.0001427856],"genre_scores_gemma":[0.9989069,0.00003650388,0.0008283,0.00001196499,0.000001093613,0.00000769694,0.00007708918,0.000006092184,0.0001244077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001005567,"threshold_uncertainty_score":0.002873182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061576695","doi":"10.1534/g3.112.002733","title":"Predicting Adaptive Phenotypes From Multilocus Genotypes in Sitka Spruce (<i>Picea sitchensis</i>) Using Random Forest","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Biology; Single-nucleotide polymorphism; Epistasis; Phenotype; Trait; Evolutionary biology; Quantitative trait locus; Population; Phenotypic trait; Phenotypic plasticity; Association mapping; Adaptation (eye); Genetics; Computational biology; Genotype; Gene; Medicine","authors":[{"name":"Jason A. Holliday","is_ca":false},{"name":"Tongli Wang","is_ca":true},{"name":"Sally N. Aitken","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02205948088814069,"gpt":0.2400678517085333,"spread":0.2180083708203926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005823591,0.0004216748,0.0002008969,0.0005504539,0.0002084895,0.0003208295,0.0001834617,0.0002243975,0.0003986932],"category_scores_gemma":[0.000766242,0.0001221222,0.0004280381,0.0003468579,0.0001981234,0.0001615195,0.0001756814,0.0002657094,0.0001431325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002184407,"about_ca_system_score_gemma":0.0002336933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007210365,"about_ca_topic_score_gemma":0.01586869,"domain_scores_codex":[0.9998515,0.00005665459,0.000006588209,0.00005950183,0.00001095494,0.00001482291],"domain_scores_gemma":[0.999606,0.0002405626,0.0000594291,0.00002497116,0.00003511256,0.00003390663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008116938,0.0002060314,0.7464733,0.0001220139,0.0006447412,0.0002971153,0.000267931,0.1080456,0.07717269,0.0005483745,0.0003939007,0.06501665],"study_design_scores_gemma":[0.00006163368,0.000248266,0.6893804,0.00002017604,0.000192073,0.0002235719,0.0001915687,0.3020918,0.005656604,0.001322466,0.0005742401,0.00003714504],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993642,0.0000695514,0.005896106,0.00001412599,0.000001600345,0.000007056247,0.0002005218,0.0000568711,0.0001121412],"genre_scores_gemma":[0.9914345,0.00002931451,0.007666118,0.00001012514,0.000001844547,0.000008695204,0.0007288224,0.00001141894,0.000109162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007210365,"threshold_uncertainty_score":0.01433682,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3136841979","doi":"10.1093/g3journal/jkab068","title":"Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses","year":2021,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institut National de la Recherche Agronomique; Recherches Avancées sur la Biologie de l’Arbre et les Ecosystèmes Forestiers; Deutsche Forschungsgemeinschaft; Max-Planck-Gesellschaft; Agence Nationale de la Recherche; Canadian Institute for Advanced Research","keywords":"Transposable element; Biology; Genome; Lineage (genetic); Evolutionary biology; DNA Transposable Elements; Genetics; Genome evolution; Gene","authors":[{"name":"Cécile Lorrain","is_ca":false},{"name":"Alice Feurtey","is_ca":false},{"name":"Mareike Möller","is_ca":false},{"name":"Janine Haueisen","is_ca":false},{"name":"Eva H. Stukenbrock","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01930710897145096,"gpt":0.2170352047029697,"spread":0.1977280957315188,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001586395,0.0001517418,0.0001915505,0.0008101171,0.0001391152,0.0003977993,0.0001707114,0.0003533076,0.0006410689],"category_scores_gemma":[0.0004020078,0.0001193851,0.0001713523,0.0005616171,0.0001788495,0.0003586327,0.0002729766,0.0002971024,0.0002240747],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002325963,"about_ca_system_score_gemma":0.00009729365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009188832,"about_ca_topic_score_gemma":0.001136027,"domain_scores_codex":[0.9998668,0.00001399328,0.00001017333,0.00006146175,0.00002402906,0.00002347751],"domain_scores_gemma":[0.9995943,0.00009129625,0.0001618786,0.00003314658,0.00005760306,0.00006196418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001515425,0.00001096948,0.02989326,0.00004507563,0.00002762113,0.0000417745,0.0001398349,0.0001469389,0.9660918,0.00007586715,0.00001699165,0.003358302],"study_design_scores_gemma":[0.00000556194,0.0001245013,0.9233612,0.000009518474,0.00004983962,0.0006683841,0.0002040643,0.001416974,0.07291917,0.0001683203,0.001057563,0.0000148309],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982986,0.0005249875,0.0005465697,0.00001124817,8.975226e-7,0.000002525551,0.000359864,0.00001421976,0.0002409783],"genre_scores_gemma":[0.9977254,0.000248,0.0007482414,0.00001477627,0.000001871491,0.000004688075,0.0009411357,0.00001237452,0.0003034392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009188832,"threshold_uncertainty_score":0.002144635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2781646070","doi":"10.1534/g3.117.300334","title":"Multiple Origin but Single Domestication Led to <i>Oryza sativa</i>","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"York University; Zegar Family Foundation; New York University Abu Dhabi; National Science Foundation","keywords":"Domestication; Oryza sativa; Introgression; Biology; Oryza; Phylogenetic tree; Evolutionary biology; Allele; Oryza rufipogon; Genetics; Botany; Gene","authors":[{"name":"Jae Young Choi","is_ca":false},{"name":"Michael D. Purugganan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02353830051714188,"gpt":0.2514797978344193,"spread":0.2279414973172774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007479863,0.0003130119,0.0004021832,0.0006782542,0.000380699,0.0005123509,0.0002957509,0.0002309993,0.001623422],"category_scores_gemma":[0.000800156,0.0001672167,0.0006937793,0.000949897,0.0003736887,0.0003823041,0.0005531542,0.0008269878,0.0003980787],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003562448,"about_ca_system_score_gemma":0.0002584037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008768686,"about_ca_topic_score_gemma":0.001796784,"domain_scores_codex":[0.9995073,0.0000828739,0.00006841405,0.0002040739,0.00006122801,0.00007610872],"domain_scores_gemma":[0.9989113,0.000327273,0.0002901669,0.0002987341,0.00008564566,0.00008695201],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004993733,0.00005389365,0.1005411,0.0002156877,0.0003438272,0.0009066099,0.000371015,0.000675084,0.8801831,0.0006225598,0.0005256131,0.01506211],"study_design_scores_gemma":[0.00004031502,0.000286763,0.7614308,0.00004804102,0.0006103989,0.002469101,0.0006070623,0.004227879,0.2152006,0.001085017,0.01393813,0.00005586062],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934815,0.0001272189,0.003306547,0.00007696609,0.00001210657,0.00001264376,0.002153934,0.0001383521,0.0006907755],"genre_scores_gemma":[0.9931925,0.00008657888,0.002425902,0.00009771995,0.00000709522,0.00001345378,0.003712462,0.0000962948,0.0003679387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001623422,"threshold_uncertainty_score":0.005430877,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119834202","doi":"10.1534/g3.115.019067","title":"RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (<i>Coregonus clupeaformis</i>) Species Pairs","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":72,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Genetic architecture; Coregonus clupeaformis; Quantitative trait locus; Parallel evolution; Genetics; Locus (genetics); Evolutionary biology; Gene; Phylogenetics; Fish <Actinopterygii>","authors":[{"name":"Martin Laporte","is_ca":true},{"name":"Sean M. Rogers","is_ca":true},{"name":"Anne‐Marie Dion‐Côté","is_ca":true},{"name":"Éric Normandeau","is_ca":true},{"name":"Pierre‐Alexandre Gagnaire","is_ca":false},{"name":"Anne C. Dalziel","is_ca":true},{"name":"Jobran Chebib","is_ca":true},{"name":"Louis Bernatchez","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1021155939716491,"gpt":0.2748641931872334,"spread":0.1727485992155843,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001904996,0.000205303,0.0002351811,0.0006909154,0.0001513457,0.00019315,0.0001978955,0.0001507187,0.0008794402],"category_scores_gemma":[0.0002054337,0.0002115015,0.0002613747,0.0003918547,0.0002852861,0.0001015433,0.0004383589,0.0002663417,0.0000887665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002431978,"about_ca_system_score_gemma":0.0001540919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002019452,"about_ca_topic_score_gemma":0.005184041,"domain_scores_codex":[0.9998565,0.00001434959,0.000008428378,0.00007592321,0.00002485919,0.00001982747],"domain_scores_gemma":[0.999841,0.00004276101,0.00005576449,0.00001938313,0.00001050511,0.00003057933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003340154,0.00003843751,0.1047632,0.0000373742,0.000104157,0.0002563054,0.0003073689,0.0005824481,0.8837877,0.0002763345,0.0000364642,0.009476165],"study_design_scores_gemma":[0.00002743596,0.0001284457,0.9852031,0.000004115992,0.00005390266,0.0002845778,0.00009034162,0.001776274,0.01206622,0.000131471,0.000223474,0.00001047611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994969,0.00001288405,0.0003698486,0.000003066292,3.028545e-7,0.000001201049,0.00003043808,0.000006119846,0.00007910033],"genre_scores_gemma":[0.9985941,0.00001568527,0.0009855054,0.000008187207,8.050117e-7,0.000005357017,0.0001589827,0.000006513631,0.0002248721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002019452,"threshold_uncertainty_score":0.004015446,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165458408","doi":"10.1534/g3.115.019851","title":"Whole-Exome Sequencing and Targeted Copy Number Analysis in Primary Ciliary Dyskinesia","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Clinical Evaluative Sciences; SickKids Foundation; St. Michael's Hospital; University of Toronto; Hospital for Sick Children","funders":"National Center for Advancing Translational Sciences; Université de Montréal; University of Toronto; National Heart, Lung, and Blood Institute; McGill University; University of North Carolina at Chapel Hill; National Institutes of Health; Rare Diseases Clinical Research Network; University of Ottawa","keywords":"Primary ciliary dyskinesia; Biology; Exome sequencing; Sanger sequencing; Copy-number variation; Molecular genetics; Genetics; Preimplantation genetic diagnosis; Genetic analysis; Genetic heterogeneity; Copy number analysis; Genetic testing; Genetic counseling; Bioinformatics; Bronchiectasis; Mutation; Gene; Phenotype; Medicine; Internal medicine; Lung; Genome","authors":[{"name":"Christian R. Marshall","is_ca":true},{"name":"Stephen W. Scherer","is_ca":true},{"name":"Maimoona A. Zariwala","is_ca":false},{"name":"Lynette Lau","is_ca":true},{"name":"Tara Paton","is_ca":true},{"name":"Tracy Stockley","is_ca":true},{"name":"Rebekah Jobling","is_ca":true},{"name":"Peter N. Ray","is_ca":true},{"name":"Michael R. Knowles","is_ca":false},{"name":"David A. Hall","is_ca":true},{"name":"Sharon Dell","is_ca":true},{"name":"Raymond H. Kim","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02759185009254612,"gpt":0.3031667389759982,"spread":0.2755748888834521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003994602,0.0003079629,0.0002737765,0.0006841769,0.0002220011,0.0002655137,0.0001864911,0.0004067227,0.0006811802],"category_scores_gemma":[0.001125793,0.0001110801,0.0002535818,0.0003427772,0.0002345948,0.0001331976,0.0003432328,0.0001522714,0.0001732741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001673751,"about_ca_system_score_gemma":0.0001862307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009080328,"about_ca_topic_score_gemma":0.001554638,"domain_scores_codex":[0.9995932,0.0001176075,0.00003362899,0.0001257967,0.00009283367,0.00003702966],"domain_scores_gemma":[0.9997627,0.0001140653,0.0000350864,0.00003175607,0.00003256941,0.00002388248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006250807,0.0001569368,0.139505,0.0001983153,0.0001930805,0.01425218,0.0005675397,0.004031287,0.7590216,0.0007208582,0.0008092547,0.07991881],"study_design_scores_gemma":[0.0001932303,0.001010744,0.5726699,0.00009014671,0.0003445557,0.07991521,0.0003394973,0.02994502,0.3063867,0.001430669,0.007617131,0.00005716238],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9865181,0.0007722696,0.01132672,0.00009623161,0.00001476403,0.00005665009,0.0003040858,0.00005039342,0.0008607283],"genre_scores_gemma":[0.9898269,0.0003046245,0.009019848,0.00007831682,0.00001051212,0.00003395482,0.0003712458,0.00001485965,0.0003397379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009080328,"threshold_uncertainty_score":0.002278805,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2797226580","doi":"10.1534/g3.118.200166","title":"Sex Differences in Recombination in Sticklebacks","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Animal Behavior and Reproduction","field":"Agricultural and Biological Sciences","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Institute of General Medical Sciences; National Institutes of Health; University of Bern","keywords":"Recombination; Centromere; Biology; Gasterosteus; Genetics; Chromosome; Sexual dimorphism; Evolutionary biology; Evolution of sexual reproduction; Homologous recombination; Gene; Zoology; Fish <Actinopterygii>","authors":[{"name":"Jason M. Sardell","is_ca":false},{"name":"Changde Cheng","is_ca":false},{"name":"Andrius J. Dagilis","is_ca":false},{"name":"Asano Ishikawa","is_ca":false},{"name":"Jun Kitano","is_ca":false},{"name":"Catherine L. Peichel","is_ca":false},{"name":"Mark Kirkpatrick","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03717626840839456,"gpt":0.2438343950195528,"spread":0.2066581266111583,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002163837,0.0001657718,0.0001877317,0.0006922441,0.0001802503,0.0002318343,0.0001264484,0.000193786,0.001517866],"category_scores_gemma":[0.0002912717,0.0001203135,0.0001924766,0.0002197423,0.0002113023,0.00009834732,0.0002296599,0.0001933807,0.0001853646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001515694,"about_ca_system_score_gemma":0.00006951117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001199047,"about_ca_topic_score_gemma":0.001749365,"domain_scores_codex":[0.9998684,0.00002141389,0.00001087536,0.00005401214,0.00002487293,0.00002045106],"domain_scores_gemma":[0.9996607,0.00008285422,0.0001429203,0.00003592321,0.00002610014,0.00005152853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003447726,0.00001838819,0.1078905,0.00007742774,0.00007332025,0.0001653174,0.0003214405,0.0001359985,0.8824397,0.0001281207,0.0000752996,0.008329646],"study_design_scores_gemma":[0.000003806094,0.00009822394,0.9877933,0.000005191618,0.00001515766,0.0002735344,0.00006070418,0.0001654047,0.01118054,0.0000808039,0.0003169281,0.000006508414],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987503,0.0002729177,0.0003412909,0.000007616993,0.000002702967,0.000002598897,0.0002293064,0.00001892402,0.0003742355],"genre_scores_gemma":[0.9990388,0.00004912638,0.0002982536,0.00001147285,0.000001906105,0.000003205713,0.0002891625,0.000008243452,0.0002999021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001517866,"threshold_uncertainty_score":0.005077779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132721442","doi":"10.1534/g3.114.012294","title":"Comparative Mapping Between Coho Salmon (<i>Oncorhynchus kisutch</i>) and Three Other Salmonids Suggests a Role for Chromosomal Rearrangements in the Retention of Duplicated Regions Following a Whole Genome Duplication Event","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Fisheries and Oceans Canada","funders":"National Marine Fisheries Service; School of Aquatic and Fishery Sciences; National Oceanic and Atmospheric Administration; University of Washington","keywords":"Biology; Oncorhynchus; Gene duplication; Synteny; Salmo; Genome; Genetics; Lineage (genetic); Evolutionary biology; Chromosome; Chromosomal rearrangement; Segmental duplication; Genome evolution; Phylogenetic tree; Karyotype; Gene; Gene family; Fish <Actinopterygii>; Fishery","authors":[{"name":"Miyako Kodama","is_ca":false},{"name":"Marine Servane Ono Brieuc","is_ca":false},{"name":"Robert H. Devlin","is_ca":true},{"name":"Jeffrey J. Hard","is_ca":false},{"name":"Kerry A. Naish","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0394220092508121,"gpt":0.2608341550685674,"spread":0.2214121458177553,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006436372,0.000151016,0.0001098833,0.0007562998,0.0003413168,0.0001991438,0.0001468298,0.0001262888,0.001438696],"category_scores_gemma":[0.0001349324,0.0001050204,0.0001780004,0.0004686661,0.0002133938,0.000116262,0.000412336,0.0001478795,0.0001946763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002817938,"about_ca_system_score_gemma":0.0003116701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01065693,"about_ca_topic_score_gemma":0.02374844,"domain_scores_codex":[0.9999391,0.000002651818,0.000004534608,0.00002507945,0.00001334291,0.0000153305],"domain_scores_gemma":[0.9998339,0.00002084181,0.00005802476,0.000008599151,0.00002450698,0.00005402089],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000228917,0.00002753447,0.1351656,0.00009849945,0.00006279831,0.0002899746,0.0005306646,0.0001237106,0.8503276,0.0003104095,0.0001039207,0.01273034],"study_design_scores_gemma":[0.000007697565,0.0001093231,0.9832928,0.000008226226,0.00002871523,0.0003655621,0.0003346458,0.000247478,0.0141173,0.00009291062,0.001388164,0.00000717381],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985937,0.0001318071,0.0003278218,0.00001059337,0.000001746111,0.000004557509,0.0001654133,0.000007456405,0.0007568379],"genre_scores_gemma":[0.9971936,0.0001048211,0.0006597367,0.00002248798,0.000002050001,0.00001145722,0.001049426,0.000004957617,0.0009515059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01065693,"threshold_uncertainty_score":0.02118981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2580757536","doi":"10.1534/g3.116.037895","title":"Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated <i>Picea glauca</i>","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Université Laval; University of British Columbia","funders":"","keywords":"Best linear unbiased prediction; Tree breeding; Heritability; Inbreeding; Genetic gain; Biology; Selection (genetic algorithm); Genotyping; Statistics; Population; Genetic variation; Genetics; Ecology; Mathematics; Demography; Computer science; Machine learning; Genotype","authors":[{"name":"Blaise Ratcliffe","is_ca":true},{"name":"Omnia Gamal El‐Dien","is_ca":true},{"name":"Eduardo P. Cappa","is_ca":false},{"name":"Ilga Porth","is_ca":true},{"name":"Jaroslav Klápště","is_ca":false},{"name":"Charles Chen","is_ca":false},{"name":"Yousry A. El‐Kassaby","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02363721184861576,"gpt":0.263347889168869,"spread":0.2397106773202533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001652655,0.0002349088,0.0002505291,0.0005824424,0.000252817,0.0003122611,0.0003867235,0.0001162002,0.0004768862],"category_scores_gemma":[0.002521644,0.0001070151,0.0002094006,0.0005364576,0.0002032443,0.0001708967,0.0003247667,0.0001936621,0.00009593934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006100761,"about_ca_system_score_gemma":0.0003714979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03484439,"about_ca_topic_score_gemma":0.09731072,"domain_scores_codex":[0.9994081,0.000296761,0.00001616691,0.0001425996,0.00008134238,0.00005496736],"domain_scores_gemma":[0.9986145,0.0007356505,0.0001986069,0.0001659334,0.0001934513,0.00009183992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0009746948,0.000222943,0.6501943,0.0001336102,0.000542726,0.0003745931,0.000874977,0.03805723,0.1249491,0.000486471,0.0005278881,0.1826614],"study_design_scores_gemma":[0.00002206198,0.0002611991,0.9108269,0.000008206732,0.0001162552,0.00009284661,0.0001846889,0.07518224,0.01265185,0.0001685581,0.0004609732,0.00002413377],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925764,0.00004302938,0.006907816,0.00001220001,0.000001051141,0.00001202351,0.0001652989,0.0000783168,0.000203875],"genre_scores_gemma":[0.9876691,0.00002381921,0.01162222,0.00001686067,0.000001125022,0.00001967683,0.0003687006,0.00001484672,0.0002636545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03484439,"threshold_uncertainty_score":0.06928319,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2309618432","doi":"10.1534/g3.115.020115","title":"Genomic Instability of the Sex-Determining Locus in Atlantic Salmon (<i>Salmo salar</i>)","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Commonwealth Scientific and Industrial Research Organisation","keywords":"Salmo; Biology; Genetics; Locus (genetics); Rainbow trout; Gene; Genome; Subfamily; Fishery; Fish <Actinopterygii>","authors":[{"name":"Krzysztof P. Lubieniecki","is_ca":true},{"name":"Song Lin","is_ca":true},{"name":"Emily I Cabana","is_ca":true},{"name":"Jieying Li","is_ca":true},{"name":"Yvonne Y. Y. Lai","is_ca":true},{"name":"William S. Davidson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02140501406453091,"gpt":0.2581575627007851,"spread":0.2367525486362542,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000837453,0.0001239734,0.0001195017,0.0002836272,0.0001516256,0.0002067412,0.0001336015,0.0001545155,0.0009457758],"category_scores_gemma":[0.0002050071,0.0001280838,0.0002037457,0.0001676977,0.0001686817,0.0000659756,0.0002672478,0.0002854943,0.0003017704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002570398,"about_ca_system_score_gemma":0.0001986203,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003169785,"about_ca_topic_score_gemma":0.005181711,"domain_scores_codex":[0.999925,0.000005172546,0.000007106447,0.0000243218,0.00002384748,0.00001449433],"domain_scores_gemma":[0.9997749,0.00003441787,0.00009685372,0.00001447203,0.00003113089,0.00004824034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007760379,0.000008434042,0.008461413,0.00002251157,0.00001299753,0.00009768011,0.00005020852,0.00003408735,0.9893783,0.00004876826,0.00004066635,0.001767344],"study_design_scores_gemma":[0.00003551341,0.000395458,0.8459008,0.00002225685,0.00007593408,0.000997629,0.0002294765,0.0009680894,0.1485498,0.000137412,0.002672967,0.00001462739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988863,0.000124342,0.0003034772,0.00002700414,0.000003921142,0.000004847462,0.0002730158,0.00001404013,0.0003630914],"genre_scores_gemma":[0.9968777,0.00007938474,0.000344409,0.00006227334,0.000004831536,0.00001554839,0.001467566,0.00001282733,0.001135411],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003169785,"threshold_uncertainty_score":0.006302655,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3047277914","doi":"10.1534/g3.120.401554","title":"A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; Princess Margaret Cancer Centre; Sinai Health System; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Canada Excellence Research Chairs, Government of Canada; Agence Nationale de la Recherche","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Coronavirus; Pandemic; Coding region; 2019-20 coronavirus outbreak; Computational biology; Coding (social sciences); Biology; Viral life cycle; Computer science; Virology; Gene; Genetics; Genome; Medicine; Mathematics; Infectious disease (medical specialty)","authors":[{"name":"Dae‐Kyum Kim","is_ca":true},{"name":"Jennifer J. Knapp","is_ca":true},{"name":"Da Kuang","is_ca":true},{"name":"Aditya Chawla","is_ca":true},{"name":"Patricia Cassonnet","is_ca":false},{"name":"Hunsang Lee","is_ca":true},{"name":"Dayag Sheykhkarimli","is_ca":true},{"name":"Payman Samavarchi‐Tehrani","is_ca":true},{"name":"Hala Abdouni","is_ca":true},{"name":"Ashyad Rayhan","is_ca":true},{"name":"Roujia Li","is_ca":true},{"name":"Oxana Pogoutse","is_ca":true},{"name":"Étienne Coyaud","is_ca":false},{"name":"Sylvie van der Werf","is_ca":false},{"name":"Caroline Demeret","is_ca":false},{"name":"Anne‐Claude Gingras","is_ca":true},{"name":"Mikko Taipale","is_ca":true},{"name":"Brian Raught","is_ca":true},{"name":"Yves Jacob","is_ca":false},{"name":"Frederick P. Roth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1482741225089403,"gpt":0.3702808716592429,"spread":0.2220067491503026,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009853316,0.001227123,0.001340002,0.002397089,0.0008378213,0.001113712,0.001019343,0.000693735,0.005278011],"category_scores_gemma":[0.00105487,0.00078678,0.001037537,0.004357694,0.000355718,0.0006854744,0.0009732216,0.001784451,0.007664373],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004815377,"about_ca_system_score_gemma":0.002017684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002204853,"about_ca_topic_score_gemma":0.004189007,"domain_scores_codex":[0.9993925,0.00007592535,0.00009580807,0.0001505099,0.0002022746,0.00008300327],"domain_scores_gemma":[0.9991463,0.0001274848,0.0001352716,0.0002203565,0.0001835303,0.0001870009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001378248,0.0002453455,0.003102748,0.0009222102,0.00009583991,0.0006485902,0.0003416414,0.001049296,0.8948629,0.001418476,0.016283,0.07965173],"study_design_scores_gemma":[0.0006219993,0.001314266,0.04438912,0.0005163582,0.000637718,0.003500246,0.000322692,0.002066376,0.2879562,0.002464686,0.6558965,0.0003138245],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.341881,0.01423194,0.1450266,0.001477139,0.001165509,0.003324604,0.4624935,0.009703059,0.02069665],"genre_scores_gemma":[0.09375497,0.006531865,0.1101291,0.0007291636,0.0002516286,0.001098226,0.7755821,0.002058018,0.009864906],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.005278011,"threshold_uncertainty_score":0.01765674,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119202375","doi":"10.1534/g3.111.000869","title":"Genome-Wide Survey of Large Rare Copy Number Variants in Alzheimer’s Disease Among Caribbean Hispanics","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; Occupational Cancer Research Centre; University of Toronto","funders":"National Institute on Aging; Howard Hughes Medical Institute; Medical Research Council; National Institutes of Health; W. Garfield Weston Foundation; Canadian Institutes of Health Research; Genome Canada; Alzheimer Society; Hospital for Sick Children; Wellcome Trust; University of Toronto; GlaxoSmithKline","keywords":"Disease; Genome; Biology; Genetics; Evolutionary biology; Medicine; Gene; Pathology","authors":[{"name":"Mahdi Ghani","is_ca":true},{"name":"Dalila Pinto","is_ca":true},{"name":"Joseph H. Lee","is_ca":true},{"name":"Yakov Grinberg","is_ca":true},{"name":"Christine Sato","is_ca":true},{"name":"Danielle Moreno","is_ca":true},{"name":"Stephen W. Scherer","is_ca":true},{"name":"Richard Mayeux","is_ca":true},{"name":"Peter St George‐Hyslop","is_ca":true},{"name":"Ekaterina Rogaeva","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01838114516828275,"gpt":0.2546562191045011,"spread":0.2362750739362184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004362492,0.0002113204,0.0002769576,0.001525351,0.0005180585,0.0004527153,0.0002403688,0.0001953157,0.001476941],"category_scores_gemma":[0.001316026,0.0001334943,0.0002056852,0.001582053,0.0001942254,0.0000964408,0.0005102764,0.0001655528,0.0001463908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003079925,"about_ca_system_score_gemma":0.0002791889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06496319,"about_ca_topic_score_gemma":0.05456408,"domain_scores_codex":[0.9996991,0.00005863715,0.00002448606,0.0001098721,0.0000544858,0.00005348738],"domain_scores_gemma":[0.9995709,0.00007138842,0.0001469243,0.00004443265,0.00009198338,0.0000743694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004294578,0.00003018469,0.9800158,0.00004540689,0.0002330161,0.0003978373,0.0008219781,0.00008001439,0.009754528,0.00006809611,0.0003261169,0.007797648],"study_design_scores_gemma":[0.00001325122,0.00002549135,0.9981078,0.00001310594,0.00006255828,0.0002094202,0.000533428,0.0001295147,0.0002980054,0.00002590804,0.0005774037,0.000004070728],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989857,0.0001819051,0.00006422185,0.00001671709,7.697352e-7,0.000005628849,0.0005664849,0.000003255827,0.0001754403],"genre_scores_gemma":[0.9977795,0.0002675692,0.000148243,0.00003129989,0.000004211618,0.00001667579,0.001556927,0.000006517709,0.0001889751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06496319,"threshold_uncertainty_score":0.1291701,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2949930656","doi":"10.1534/g3.115.024596","title":"Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis","year":2016,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Genotyping; Haplotype; Biology; Genome; Genomics; Computational biology; Polyploid; Reference genome; Single-nucleotide polymorphism; Locus (genetics); DNA sequencing; Genetics; Genotype; Computer science; Gene","authors":[{"name":"Nicholas A. Tinker","is_ca":true},{"name":"Wubishet A. Bekele","is_ca":true},{"name":"Jiro Hattori","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01838367195441515,"gpt":0.2326473485488382,"spread":0.2142636765944231,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00374231,0.001887446,0.001612437,0.003301817,0.000897336,0.00181998,0.002579309,0.001165215,0.05271598],"category_scores_gemma":[0.007291041,0.001911433,0.001610379,0.002022076,0.0008728743,0.002036104,0.00303967,0.002029525,0.023063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007984557,"about_ca_system_score_gemma":0.00205737,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00221254,"about_ca_topic_score_gemma":0.002800484,"domain_scores_codex":[0.9985246,0.0003815897,0.0002251369,0.0003949015,0.0003445298,0.0001292946],"domain_scores_gemma":[0.997692,0.001223983,0.0003342552,0.0004187257,0.0002143924,0.0001166824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001970269,0.0002163942,0.01134628,0.004132231,0.001134789,0.001088238,0.001652588,0.01304918,0.05359742,0.01965393,0.4760522,0.4161066],"study_design_scores_gemma":[0.001133952,0.0002525109,0.01729319,0.0008520858,0.0004609054,0.002465015,0.0003955997,0.1590712,0.07546219,0.07118391,0.6707792,0.0006502713],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.005928272,0.0006002699,0.5590006,0.0002127247,0.0002751343,0.000551939,0.03508063,0.3931839,0.005166573],"genre_scores_gemma":[0.02922918,0.0005467595,0.8275415,0.0006505207,0.00009012454,0.002901856,0.0609154,0.07041055,0.007714167],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05271598,"threshold_uncertainty_score":0.1763525,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2214274340","doi":"10.1534/g3.115.019174","title":"An Updated Collection of Sequence Barcoded Temperature-Sensitive Alleles of Yeast Essential Genes","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Allele; Biology; Genetics; Gene; Saccharomyces cerevisiae; Phenotype; Gene Annotation; Mutant; Computational biology; Genome","authors":[{"name":"Megan Kofoed","is_ca":true},{"name":"Karissa L. Milbury","is_ca":true},{"name":"Jennifer Chiang","is_ca":true},{"name":"Sunita Sinha","is_ca":true},{"name":"Shay Ben‐Aroya","is_ca":false},{"name":"Guri Giaever","is_ca":true},{"name":"Corey Nislow","is_ca":true},{"name":"Philip Hieter","is_ca":true},{"name":"Peter C. Stirling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02338997577164923,"gpt":0.2938238534790183,"spread":0.2704338777073691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001382399,0.001694511,0.001423003,0.003930601,0.0009527307,0.001125996,0.002098841,0.0007038661,0.006630649],"category_scores_gemma":[0.001788723,0.00100993,0.0009279104,0.004849285,0.0003221931,0.0008504369,0.001215336,0.002826129,0.00708704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006504451,"about_ca_system_score_gemma":0.001618339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002042218,"about_ca_topic_score_gemma":0.006347986,"domain_scores_codex":[0.99915,0.00006578601,0.0001649439,0.0001193856,0.000428011,0.00007189966],"domain_scores_gemma":[0.9972063,0.0003499316,0.0002932062,0.000882214,0.000888331,0.0003800265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009848825,0.0003600496,0.002450957,0.0008262697,0.0001354638,0.000618312,0.0002247876,0.000780243,0.8887262,0.0008188738,0.0254824,0.07859156],"study_design_scores_gemma":[0.0004471778,0.0007736685,0.03726293,0.0002109388,0.0008202283,0.005290459,0.0001772233,0.003573772,0.3944077,0.001347643,0.555272,0.0004162625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.2664988,0.00626633,0.1814088,0.0009133448,0.002024068,0.0019868,0.4965309,0.02848483,0.01588608],"genre_scores_gemma":[0.05120282,0.002752384,0.1339295,0.0003959012,0.0001855359,0.0008357077,0.794303,0.00409033,0.01230475],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.006630649,"threshold_uncertainty_score":0.02218175,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2962627674","doi":"10.1534/g3.119.400228","title":"Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat ( <i>Avena sativa</i> L.)","year":2019,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Colorado State University; U.S. Department of Agriculture","keywords":"Avena; Biology; Genome-wide association study; Genetic association; Botany; Genetics; Gene; Single-nucleotide polymorphism; Genotype","authors":[{"name":"Maryn O. Carlson","is_ca":false},{"name":"Gracia Montilla‐Bascón","is_ca":false},{"name":"Owen A. Hoekenga","is_ca":false},{"name":"Nicholas A. Tinker","is_ca":true},{"name":"Jesse Poland","is_ca":false},{"name":"Matheus Baseggio","is_ca":false},{"name":"Mark E. Sorrells","is_ca":false},{"name":"Jean‐Luc Jannink","is_ca":false},{"name":"Michael A. Gore","is_ca":false},{"name":"Trevor H. Yeats","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01341221811957949,"gpt":0.2509804682290937,"spread":0.2375682501095142,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009176264,0.0003969394,0.0003023917,0.0006628039,0.0002270886,0.0004918213,0.0003181797,0.0002963646,0.001074889],"category_scores_gemma":[0.001260375,0.0002418643,0.0009167569,0.000802712,0.0002931154,0.0001795704,0.0003531931,0.0005365078,0.00009451037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002712969,"about_ca_system_score_gemma":0.0002305162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005612718,"about_ca_topic_score_gemma":0.01010604,"domain_scores_codex":[0.9992829,0.0002353811,0.00004421908,0.0003035722,0.0000734951,0.00006042079],"domain_scores_gemma":[0.9987164,0.000503064,0.0004775102,0.0001440702,0.00006248632,0.00009644615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001337836,0.0001083852,0.7483939,0.00006239232,0.001591837,0.000461248,0.0002306963,0.004097617,0.2210178,0.0006918116,0.0003060932,0.02170042],"study_design_scores_gemma":[0.00002433529,0.00006602098,0.9815528,0.0000038548,0.0002482039,0.0001616456,0.00003945987,0.01428281,0.00302856,0.0002950681,0.0002804826,0.00001679333],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964589,0.0001030772,0.002978645,0.00003266744,0.000003083085,0.000002824838,0.000225527,0.00006520897,0.000130106],"genre_scores_gemma":[0.9974178,0.00003837577,0.002159185,0.00001670192,0.000004481098,0.000004545383,0.0002048271,0.00001879829,0.0001352503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005612718,"threshold_uncertainty_score":0.01116014,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2519595261","doi":"10.1534/g3.116.033423","title":"Sequential Turnovers of Sex Chromosomes in African Clawed Frogs (<i>Xenopus</i>) Suggest Some Genomic Regions Are Good at Sex Determination","year":2016,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"African clawed frog; Xenopus; Biology; Evolutionary biology; Zoology; Genetics; Gene","authors":[{"name":"Benjamin L. S. Furman","is_ca":true},{"name":"Ben J. Evans","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01428211550687611,"gpt":0.2471255209592393,"spread":0.2328434054523632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001477205,0.0001081221,0.0001552532,0.0007659033,0.0002240574,0.0002934402,0.0002123987,0.0002886348,0.002459516],"category_scores_gemma":[0.0002235717,0.0001359461,0.0002053982,0.0002927874,0.0003100655,0.000231115,0.0001643683,0.0002817487,0.0003942916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001700284,"about_ca_system_score_gemma":0.00006674197,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006646431,"about_ca_topic_score_gemma":0.0008893111,"domain_scores_codex":[0.9999101,0.000009532599,0.000007211665,0.00003787911,0.0000134742,0.00002169617],"domain_scores_gemma":[0.999719,0.00003784472,0.0001376842,0.00002602034,0.00002747727,0.00005196216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00024678,0.000009456138,0.02512845,0.00002741247,0.0000194281,0.0001685735,0.00007215064,0.00005476137,0.9710368,0.000212629,0.00003981331,0.002983773],"study_design_scores_gemma":[0.00001276087,0.0001896991,0.8860571,0.0000117129,0.00002615999,0.002778854,0.0001713443,0.0003548929,0.1083985,0.0002315657,0.001755612,0.00001164155],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997683,0.000503453,0.000582376,0.00002296803,0.000003723511,0.000004466331,0.0002612869,0.00003601499,0.0009026148],"genre_scores_gemma":[0.9985679,0.00009354661,0.0004326603,0.00001168727,0.000002976928,0.000004725719,0.0002164795,0.000009668574,0.0006602564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002459516,"threshold_uncertainty_score":0.008227944,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2112295728","doi":"10.1534/g3.113.009597","title":"Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent <i>Haemophilus influenzae</i>","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"National Institutes of Health; Canadian Institutes of Health Research; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Genetics; Homologous recombination; Recombination; Genetic recombination; Gene conversion; Haemophilus influenzae; Gene; Population; Genome; DNA; Bacteria","authors":[{"name":"Joshua Chang Mell","is_ca":true},{"name":"Jae Yun Lee","is_ca":true},{"name":"Marlo Firme","is_ca":true},{"name":"Sunita Sinha","is_ca":true},{"name":"Rosemary J. Redfield","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005300973584444003,"gpt":0.2146498500016255,"spread":0.2093488764171815,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004576707,0.0003238765,0.0002371125,0.0002782299,0.0001779671,0.0002772578,0.0004374098,0.000332473,0.001432266],"category_scores_gemma":[0.0004278274,0.0002095787,0.0003437501,0.0002768847,0.0003226523,0.0001707041,0.0006055877,0.001062339,0.0003473675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004790088,"about_ca_system_score_gemma":0.0002713944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001366795,"about_ca_topic_score_gemma":0.002742444,"domain_scores_codex":[0.9995413,0.0001074129,0.0000538398,0.0001256872,0.00009942722,0.00007236209],"domain_scores_gemma":[0.9994629,0.0001912671,0.0001092523,0.0001409855,0.00003253817,0.00006310943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006392384,0.00005902755,0.0005416345,0.00002519804,0.00001121786,0.00004982645,0.00004141305,0.00008972448,0.9973131,0.0001747372,0.0000257514,0.001604391],"study_design_scores_gemma":[0.00003118741,0.0005641705,0.01455318,0.000006413412,0.00002946422,0.000419822,0.00007008594,0.002158878,0.9786627,0.0001140553,0.003377901,0.00001222313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858504,0.0003713279,0.01135123,0.00009012277,0.00005221026,0.0001455812,0.0005497902,0.0001497737,0.001439509],"genre_scores_gemma":[0.9767312,0.000320365,0.01651613,0.00007729578,0.00001557084,0.000121906,0.002559788,0.0001583116,0.003499305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001432266,"threshold_uncertainty_score":0.004791439,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115451389","doi":"10.1534/g3.112.003715","title":"Interactions of NADP-Reducing Enzymes Across Varying Environmental Conditions: A Model of Biological Complexity","year":2012,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Laurentian University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Malic enzyme; Nicotinamide adenine dinucleotide phosphate; Dehydrogenase; Context (archaeology); Biochemistry; Enzyme; Isocitrate dehydrogenase; Biology; Oxidative stress; Malate dehydrogenase; Genetics; Oxidase test","authors":[{"name":"Teresa Z. Rzezniczak","is_ca":true},{"name":"Thomas Merritt","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07869746327877727,"gpt":0.3165665345924455,"spread":0.2378690713136682,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006817326,0.0005422232,0.0005563701,0.0009034778,0.0007573113,0.002003123,0.0009718206,0.0009647107,0.001526197],"category_scores_gemma":[0.002250449,0.0004539536,0.000726936,0.0006800606,0.001946699,0.004442076,0.00106745,0.000671624,0.000368493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001170403,"about_ca_system_score_gemma":0.0005192435,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003457905,"about_ca_topic_score_gemma":0.002586497,"domain_scores_codex":[0.9995168,0.000147852,0.00001408536,0.0001992909,0.00006595825,0.00005592383],"domain_scores_gemma":[0.998858,0.0004870069,0.0002658134,0.0001546881,0.00008371916,0.0001508446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005067071,0.0002655336,0.02261812,0.0004363979,0.0005062714,0.0009087769,0.001398436,0.5665742,0.1298557,0.244709,0.001287263,0.03093357],"study_design_scores_gemma":[0.00005856072,0.000202763,0.01600465,0.00002351721,0.0001104586,0.0002890796,0.0002401006,0.7090824,0.002593971,0.2686812,0.002632078,0.00008125669],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7473756,0.0008254295,0.2337305,0.002332215,0.00004529604,0.0001048509,0.0005605874,0.0005685844,0.01445695],"genre_scores_gemma":[0.9816745,0.0004206388,0.01545605,0.0001351711,0.00003166903,0.0001222294,0.0001791251,0.00003654132,0.001944016],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003457905,"threshold_uncertainty_score":0.008491874,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4298124603","doi":"10.1093/g3journal/jkac224","title":"The future of fungi: threats and opportunities","year":2022,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McMaster University; McGill University; University of British Columbia; University of Guelph; Canada's Michael Smith Genome Sciences Centre; University of Manitoba; University of Toronto","funders":"Division of Graduate Education; National Institute of General Medical Sciences; National Cancer Institute; Natural Environment Research Council; Great Lakes Bioenergy Research Center; Office of Science; National Institutes of Health; National Institute of Food and Agriculture; Sight Research UK; Wellcome Trust; Canadian Institute for Advanced Research; Memorial Sloan-Kettering Cancer Center; Canadian Institutes of Health Research; National Science Foundation; National Institute of Allergy and Infectious Diseases; Medical Research Council; Richard and Susan Smith Family Foundation; U.S. Department of Energy; Gordon and Betty Moore Foundation; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"Biology; Agriculture; Food security; Human health; Environmental planning; Biotechnology; Environmental resource management; Ecology; Business; Environmental health; Geography","authors":[{"name":"Nicola T. Case","is_ca":true},{"name":"Judith Berman","is_ca":false},{"name":"David S. Blehert","is_ca":false},{"name":"Robert A. Cramer","is_ca":false},{"name":"Christina A. Cuomo","is_ca":false},{"name":"Cameron R. Currie","is_ca":false},{"name":"Iuliana V. Ene","is_ca":false},{"name":"Matthew C. Fisher","is_ca":false},{"name":"Lillian K. Fritz‐Laylin","is_ca":false},{"name":"Aleeza C. Gerstein","is_ca":true},{"name":"N. Louise Glass","is_ca":false},{"name":"Neil A. R. Gow","is_ca":false},{"name":"Sarah J. Gurr","is_ca":false},{"name":"Chris Todd Hittinger","is_ca":false},{"name":"Tobias M. Hohl","is_ca":false},{"name":"Iliyan D. Iliev","is_ca":false},{"name":"Timothy Y. James","is_ca":false},{"name":"Hailing Jin","is_ca":false},{"name":"Bruce S. Klein","is_ca":false},{"name":"James W. Kronstad","is_ca":true},{"name":"Jeffrey M. Lorch","is_ca":false},{"name":"Victoria McGovern","is_ca":false},{"name":"Aaron P. Mitchell","is_ca":false},{"name":"Julia A. Segre","is_ca":false},{"name":"Rebecca S. Shapiro","is_ca":true},{"name":"Donald C. Sheppard","is_ca":true},{"name":"Anita Sil","is_ca":false},{"name":"Jason Stajich","is_ca":false},{"name":"Eva E Stukenbrock","is_ca":false},{"name":"John W. Taylor","is_ca":false},{"name":"Dawn Thompson","is_ca":false},{"name":"Gerard D. Wright","is_ca":true},{"name":"Joseph Heitman","is_ca":false},{"name":"Leah E. Cowen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03180376245757023,"gpt":0.2186127782742184,"spread":0.1868090158166481,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003587954,0.0007827784,0.0009097079,0.001305666,0.001701597,0.006599834,0.0009111181,0.005582143,0.008694403],"category_scores_gemma":[0.001931684,0.000298353,0.0006637012,0.001195461,0.004168108,0.01068721,0.003081065,0.004439372,0.001909115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002438678,"about_ca_system_score_gemma":0.004948296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001848196,"about_ca_topic_score_gemma":0.004034173,"domain_scores_codex":[0.998912,0.0002904722,0.00006408711,0.0001523584,0.0002684703,0.0003126019],"domain_scores_gemma":[0.9972212,0.001118531,0.0002730105,0.0001417756,0.0004169179,0.0008284423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000590641,0.0001990068,0.002702522,0.005167347,0.00005580434,0.001233025,0.001757359,0.001274869,0.02146534,0.1594824,0.07810628,0.7279654],"study_design_scores_gemma":[0.00001896313,0.0002221663,0.001542599,0.001411282,0.00002540935,0.001087786,0.002942166,0.0003997787,0.001859727,0.08763123,0.9028127,0.00004621346],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00412207,0.9082151,0.001862178,0.07318356,0.002395927,0.00001335941,0.0000831521,0.00005720506,0.01006739],"genre_scores_gemma":[0.0560364,0.9124224,0.00655514,0.01437462,0.003601805,0.00002860902,0.0001273151,0.00002326691,0.00683045],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.008694403,"threshold_uncertainty_score":0.0290857,"prediction_status":"machine_predicted_unvalidated"},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"not_applicable","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"design_other","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2130687646","doi":"10.1534/g3.114.011551","title":"A Roadmap for Functional Structural Variants in the Soybean Genome","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"United Soybean Board; National Science Foundation","keywords":"Biology; Gene; Gene duplication; Genetics; Genome; Locus (genetics); Segmental duplication; Gene family; Population; Computational biology","authors":[{"name":"Justin Anderson","is_ca":false},{"name":"Michael B. Kantar","is_ca":true},{"name":"Thomas J. Y. Kono","is_ca":false},{"name":"Fengli Fu","is_ca":false},{"name":"Adrian O. Stec","is_ca":false},{"name":"Qijian Song","is_ca":false},{"name":"Perry B. Cregan","is_ca":false},{"name":"James E. Specht","is_ca":false},{"name":"Brian W. Diers","is_ca":false},{"name":"Steven B. Cannon","is_ca":false},{"name":"Leah K. McHale","is_ca":false},{"name":"Robert M. Stupar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02947661998457963,"gpt":0.2217509797644295,"spread":0.1922743597798499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003825991,0.0003209931,0.0003484534,0.0008344146,0.0002213071,0.000455957,0.0002752586,0.0004558297,0.003007996],"category_scores_gemma":[0.0004492039,0.000159283,0.0003506847,0.000665755,0.0001859398,0.0002532291,0.0003826157,0.0006456496,0.0004330658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003124963,"about_ca_system_score_gemma":0.0004895672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002007452,"about_ca_topic_score_gemma":0.003059291,"domain_scores_codex":[0.9998758,0.00001507756,0.000007577455,0.00005476056,0.00002258093,0.00002424816],"domain_scores_gemma":[0.9996872,0.00009483205,0.00006711043,0.00002462341,0.00004033073,0.00008595015],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001529221,0.0001301695,0.06677541,0.0006467026,0.0001871588,0.00150053,0.0004104307,0.001584694,0.7891634,0.00348843,0.00180815,0.1327757],"study_design_scores_gemma":[0.0002153192,0.001028508,0.9221328,0.0001681621,0.0003028217,0.002269185,0.0004109057,0.004177562,0.0213746,0.006239866,0.04163469,0.00004563221],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9705556,0.007240657,0.009523466,0.001115921,0.00004968404,0.0000890079,0.006351821,0.0002659883,0.004807903],"genre_scores_gemma":[0.9567168,0.003220325,0.01720304,0.0004267719,0.00005562705,0.00005641087,0.02049962,0.00005247852,0.001768835],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003007996,"threshold_uncertainty_score":0.01006281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2808181305","doi":"10.1534/g3.118.200118","title":"Detecting<i>de Novo</i>Homoeologous Recombination Events in Cultivated<i>Brassica napus</i>Using a Genome-Wide SNP Array","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; Agriculture and Agri-Food Canada","keywords":"Biology; Brassica; Genome; Genetics; Ploidy; SNP array; Chromosome; Recombination; Aneuploidy; Genome evolution; Gene; Single-nucleotide polymorphism; Botany; Genotype","authors":[{"name":"Erin E. Higgins","is_ca":true},{"name":"Wayne E. Clarke","is_ca":true},{"name":"Elaine C Howell","is_ca":false},{"name":"Susan J. Armstrong","is_ca":false},{"name":"Isobel A. P. Parkin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02767519306942728,"gpt":0.2470771827607904,"spread":0.2194019896913631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002210245,0.0002110667,0.0002347156,0.0008387004,0.0002136395,0.0003646359,0.0002194856,0.0003071349,0.0008150918],"category_scores_gemma":[0.0003052602,0.0001408584,0.0002188269,0.0004808808,0.000156598,0.00009201538,0.0002043697,0.000282316,0.0002748084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002383614,"about_ca_system_score_gemma":0.0001043604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002464188,"about_ca_topic_score_gemma":0.006257336,"domain_scores_codex":[0.999736,0.00002582026,0.00001753205,0.0001281023,0.00006079147,0.00003177434],"domain_scores_gemma":[0.9996663,0.00009082848,0.0001084939,0.00003928455,0.00004867678,0.00004644439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001027875,0.0000165561,0.02316511,0.00003760594,0.00003637046,0.00005039118,0.00008601973,0.0001131804,0.9733779,0.00003704602,0.00004854348,0.002928591],"study_design_scores_gemma":[0.00001358869,0.000145133,0.9192581,0.00001089629,0.00006036476,0.0005228519,0.0001127176,0.0009323265,0.07720844,0.00006580407,0.001656427,0.00001316373],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955134,0.0003210297,0.001644958,0.0000214142,0.000003199617,0.00001564609,0.001833951,0.00006729912,0.0005789898],"genre_scores_gemma":[0.9920428,0.0001328948,0.003920044,0.00004535159,0.00000429459,0.00002851774,0.003098011,0.00002279756,0.0007053055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002464188,"threshold_uncertainty_score":0.004899681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2222710573","doi":"10.1534/g3.115.020321","title":"Disease Variant Landscape of a Large Multiethnic Population of Moyamoya Patients by Exome Sequencing","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Moyamoya disease diagnosis and treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"National Human Genome Research Institute","keywords":"Founder effect; Exome sequencing; Genetics; Exome; Mutation; Penetrance; Moyamoya disease; Population; Biology; Etiology; Medicine; Haplotype; Pathology; Gene; Internal medicine; Genotype; Phenotype","authors":[{"name":"Lorelei D. Shoemaker","is_ca":false},{"name":"Michael J. Clark","is_ca":false},{"name":"Anil Patwardhan","is_ca":false},{"name":"Gemma Chandratillake","is_ca":false},{"name":"Sarah Garcia","is_ca":false},{"name":"Rong Chen","is_ca":false},{"name":"Alexander A. Morgan","is_ca":false},{"name":"Nan Leng","is_ca":false},{"name":"Scott Kirk","is_ca":false},{"name":"Richard Chen","is_ca":false},{"name":"Douglas J. Cook","is_ca":true},{"name":"M Snyder","is_ca":false},{"name":"Gary K. Steinberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02623355868544847,"gpt":0.2780559979069296,"spread":0.2518224392214811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002477444,0.0002711187,0.0004042885,0.0006325262,0.00062665,0.000723898,0.0001982218,0.0003970666,0.001170812],"category_scores_gemma":[0.0009049139,0.0001246995,0.0002853941,0.0007643091,0.0002095352,0.0002073731,0.000603443,0.0002660204,0.0002020094],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001670586,"about_ca_system_score_gemma":0.00008899636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001841861,"about_ca_topic_score_gemma":0.002638223,"domain_scores_codex":[0.999671,0.0000492284,0.00003334056,0.0001746662,0.00004157114,0.0000301479],"domain_scores_gemma":[0.999809,0.00004699166,0.00004339297,0.00002354836,0.00003867686,0.00003844555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006077273,0.00006160716,0.9369315,0.00004498529,0.0003245315,0.002483115,0.001305321,0.000208862,0.04599675,0.0001264835,0.0005198169,0.01138937],"study_design_scores_gemma":[0.00001249765,0.00006405781,0.9943122,0.000008792988,0.00008081378,0.003024497,0.000367777,0.0004177627,0.0007055756,0.00009254157,0.0009045313,0.000008921011],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992715,0.0001172591,0.0001374028,0.00001848907,0.000001346839,0.000004416145,0.00030018,0.000002922164,0.0001466181],"genre_scores_gemma":[0.9982127,0.000126479,0.0002612082,0.00003609443,0.000005604473,0.00001351859,0.001149363,0.000006796433,0.0001882638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001841861,"threshold_uncertainty_score":0.00391674,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051120434","doi":"10.1534/g3.112.003871","title":"Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant<i>Centaurea solstitialis</i>","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Population genomics; Genomics; Population; Transcriptome; Identification (biology); Computational biology; Genetics; Genome; Evolutionary biology; DNA sequencing; Gene; Ecology","authors":[{"name":"Katrina M. Dlugosch","is_ca":true},{"name":"Zhao Lai","is_ca":false},{"name":"Aurélie Bonin","is_ca":false},{"name":"José L. Hierro","is_ca":false},{"name":"Loren H. Rieseberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01693489988077542,"gpt":0.2302046094140963,"spread":0.2132697095333209,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009730685,0.0004792228,0.0004450472,0.0008882521,0.0004555302,0.0007883147,0.0005065879,0.000354558,0.002421376],"category_scores_gemma":[0.001535378,0.000329674,0.000712788,0.0007798612,0.0002642719,0.0004502866,0.0008344015,0.001045438,0.001196121],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003902138,"about_ca_system_score_gemma":0.0005075657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001221411,"about_ca_topic_score_gemma":0.003773549,"domain_scores_codex":[0.9996368,0.00003807619,0.00002233351,0.0001876751,0.00007808421,0.00003710289],"domain_scores_gemma":[0.9995112,0.0001702236,0.0001231593,0.00009023683,0.0000637418,0.00004136741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002714198,0.00007339576,0.01309319,0.0003684248,0.0001059405,0.0002206749,0.0005848022,0.001456549,0.9206833,0.001209287,0.002078392,0.0598546],"study_design_scores_gemma":[0.0001257591,0.0003799168,0.1972473,0.0001082989,0.0003046491,0.001219198,0.0004162253,0.06003562,0.6894634,0.004804406,0.04577129,0.0001239788],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6498423,0.0005607955,0.3121633,0.0003302445,0.00009628135,0.0002374531,0.01979923,0.01280195,0.004168422],"genre_scores_gemma":[0.6554748,0.0003039371,0.304435,0.0002521537,0.00003512983,0.0003630227,0.03346165,0.003299429,0.002374887],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002421376,"threshold_uncertainty_score":0.008100331,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3006004188","doi":"10.1534/g3.119.400957","title":"Assessing Diversity in the<i>Camelina</i>Genus Provides Insights into the Genome Structure of<i>Camelina sativa</i>","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute; National Research Council Canada; University of Saskatchewan; Saskatchewan Research Council (Canada); Global Institute for Water Security; Agriculture and Agri-Food Canada","funders":"Deutsche Forschungsgemeinschaft","keywords":"Camelina; Camelina sativa; Biology; Ploidy; Brassicaceae; Botany; Germplasm; Crop; Genetic diversity; Domestication; Population; Genetics; Agronomy; Gene","authors":[{"name":"Raju Chaudhary","is_ca":true},{"name":"ChuShin Koh","is_ca":true},{"name":"Sateesh Kagale","is_ca":true},{"name":"Lily Tang","is_ca":true},{"name":"Siu Wah Wu","is_ca":true},{"name":"Zhenling Lv","is_ca":false},{"name":"Annaliese S. Mason","is_ca":false},{"name":"Andrew Sharpe","is_ca":true},{"name":"Axel Diederichsen","is_ca":true},{"name":"Isobel A. P. Parkin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01943821751549989,"gpt":0.241041087079885,"spread":0.2216028695643851,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001758644,0.0001856168,0.0002309683,0.001617193,0.000289546,0.000375572,0.0001650687,0.0002088596,0.001514929],"category_scores_gemma":[0.0002128441,0.00008031461,0.0003207319,0.0007595779,0.0001340121,0.0002176984,0.0002931232,0.000153407,0.0002493024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003308816,"about_ca_system_score_gemma":0.00007870582,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001232697,"about_ca_topic_score_gemma":0.001703001,"domain_scores_codex":[0.999886,0.00001153285,0.00001161231,0.00006078279,0.00001535769,0.00001465433],"domain_scores_gemma":[0.9998471,0.00002153475,0.00006557543,0.00001745036,0.00002563654,0.00002274181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003246445,0.00002721275,0.09903746,0.000151921,0.0001307652,0.0001093198,0.0002954975,0.00008900851,0.8878844,0.000132557,0.000130385,0.01168685],"study_design_scores_gemma":[0.000008806471,0.0001163168,0.982262,0.00001683215,0.00006893979,0.0002741288,0.0001562518,0.0002134463,0.01416947,0.00005532647,0.002652569,0.000005935372],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962268,0.0004953156,0.0007634492,0.00002007251,0.000003887847,0.00001262118,0.001618284,0.00002632467,0.0008332633],"genre_scores_gemma":[0.9941604,0.0001810667,0.001453718,0.00003390249,0.000005190238,0.00001805231,0.003694437,0.00001342448,0.0004397832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001617193,"threshold_uncertainty_score":0.005068004,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2256177433","doi":"10.1534/g3.115.021345","title":"Whole-Genome Sequencing Suggests Schizophrenia Risk Mechanisms in Humans with 22q11.2 Deletion Syndrome","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University Health Network; University of Toronto; Centre for Addiction and Mental Health; Toronto Western Hospital; Hospital for Sick Children","funders":"National Institute of Mental Health; Genome Canada; Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto; GlaxoSmithKline","keywords":"Haploinsufficiency; Genetics; Biology; Gene; Schizophrenia (object-oriented programming); Intergenic region; Genome; Genome-wide association study; Computational biology; Phenotype; Single-nucleotide polymorphism; Medicine; Genotype; Psychiatry","authors":[{"name":"Daniele Merico","is_ca":true},{"name":"Mehdi Zarrei","is_ca":true},{"name":"Gregory Costain","is_ca":true},{"name":"Lucas Ogura","is_ca":true},{"name":"Babak Alipanahi","is_ca":true},{"name":"Matthew J. Gazzellone","is_ca":true},{"name":"Nancy J. Butcher","is_ca":true},{"name":"Bhooma Thiruvahindrapuram","is_ca":true},{"name":"Thomas Nalpathamkalam","is_ca":true},{"name":"Eva W.C. Chow","is_ca":true},{"name":"Danielle M. Andrade","is_ca":true},{"name":"Brendan J. Frey","is_ca":true},{"name":"Christian R. Marshall","is_ca":true},{"name":"Stephen W. Scherer","is_ca":true},{"name":"Anne S. Bassett","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02206860275926746,"gpt":0.2628025132691442,"spread":0.2407339105098767,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004394295,0.0006732556,0.0003335992,0.001013295,0.0002609822,0.0004599072,0.0002518739,0.0005860455,0.002502344],"category_scores_gemma":[0.001140326,0.0002477612,0.0004526555,0.000504892,0.000434246,0.0001608612,0.0003716672,0.0003905598,0.0002378284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001361911,"about_ca_system_score_gemma":0.0002388269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002225924,"about_ca_topic_score_gemma":0.003495814,"domain_scores_codex":[0.9997008,0.00006710987,0.00002105484,0.0001229432,0.00005474439,0.00003342248],"domain_scores_gemma":[0.9996234,0.0001373901,0.0001239319,0.0000514639,0.0000229894,0.00004076222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002027489,0.00008900376,0.3919376,0.0002073477,0.001205685,0.004604486,0.000606307,0.00313867,0.573498,0.001570364,0.0005166329,0.02059843],"study_design_scores_gemma":[0.0001325481,0.0003190282,0.9618686,0.00004672499,0.0007138111,0.006306851,0.0001984991,0.003886557,0.02230292,0.001806495,0.002375305,0.00004265453],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960476,0.0005295275,0.002358616,0.0001316144,0.000008786998,0.000008762179,0.0004615257,0.00004552607,0.0004081516],"genre_scores_gemma":[0.9978581,0.0002299348,0.001124213,0.00006197413,0.000008271187,0.000006456109,0.0004132639,0.0000155533,0.0002821329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002502344,"threshold_uncertainty_score":0.008371174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117455069","doi":"10.1534/g3.112.004986","title":"Unequal Recombination and Evolution of the Mating-Type (<i>MAT</i>) Loci in the Pathogenic Fungus<i>Grosmannia clavigera</i>and Relatives","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Natural Resources Canada; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Université Paris-Sud; Natural Resources Canada; University of Alberta; Genome British Columbia; Genome Alberta; Centre Hospitalier Universitaire de Québec; Government of Alberta; Genome Canada","keywords":"Biology; Mating type; Genetics; Locus (genetics); Gene; Concerted evolution; Ascomycota; Genome","authors":[{"name":"Clement K. M. Tsui","is_ca":true},{"name":"Scott DiGuistini","is_ca":true},{"name":"Ye Wang","is_ca":true},{"name":"Nicolas Feau","is_ca":true},{"name":"Braham Dhillon","is_ca":true},{"name":"Jörg Bohlmann","is_ca":true},{"name":"Richard C. Hamelin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007795568973430211,"gpt":0.2045157634207705,"spread":0.1967201944473403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001016072,0.0002893053,0.0001549447,0.0005385628,0.0002193741,0.0003049108,0.000217856,0.0002311013,0.0003897473],"category_scores_gemma":[0.0001822416,0.000203412,0.0002359225,0.0004153565,0.0001537889,0.000125562,0.0003204006,0.0004499644,0.0001465868],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003302018,"about_ca_system_score_gemma":0.0001615626,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001087529,"about_ca_topic_score_gemma":0.00163702,"domain_scores_codex":[0.9998593,0.00001641228,0.00000880773,0.0000481483,0.00003365746,0.00003368584],"domain_scores_gemma":[0.9998018,0.00002359742,0.0001069393,0.00001760176,0.00001291027,0.00003717157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001018129,0.00001622337,0.007157766,0.00001727578,0.000007311812,0.00006852712,0.00005944951,0.00006820628,0.9902563,0.00006467829,0.000008902188,0.002173502],"study_design_scores_gemma":[0.00003060565,0.0004691921,0.6360602,0.00001941876,0.00009639595,0.002836118,0.0003035165,0.001758368,0.3547412,0.0002213481,0.003432433,0.00003119833],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993076,0.0001093903,0.0003113592,0.000006162954,7.837918e-7,0.000003703029,0.00008716447,0.000008542962,0.0001651884],"genre_scores_gemma":[0.9977768,0.0001203575,0.00102637,0.00001837615,0.000002025018,0.00000820159,0.0006393095,0.0000111399,0.0003973822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001087529,"threshold_uncertainty_score":0.002395749,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3200098346","doi":"10.1093/g3journal/jkab325","title":"<i>Aegilops tauschii</i> genome assembly Aet v5.0 features greater sequence contiguity and improved annotation","year":2021,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Concordia University","funders":"National Science Foundation","keywords":"Biology; Aegilops tauschii; Contiguity; Annotation; Genome; Sequence assembly; Genetics; Sequence (biology); Evolutionary biology; Computational biology; Gene; Transcriptome; Ecology","authors":[{"name":"Le Wang","is_ca":false},{"name":"Tingting Zhu","is_ca":false},{"name":"J. Rodriguez","is_ca":false},{"name":"Karin R. Deal","is_ca":false},{"name":"Jorge Dubcovsky","is_ca":false},{"name":"Patrick E. McGuire","is_ca":false},{"name":"Thomas Lux","is_ca":false},{"name":"M. Spannagl","is_ca":false},{"name":"Klaus Mayer","is_ca":false},{"name":"Patricia Baldrich","is_ca":false},{"name":"Blake C. Meyers","is_ca":false},{"name":"Naxin Huo","is_ca":false},{"name":"Yong Gu","is_ca":false},{"name":"Hongye Zhou","is_ca":false},{"name":"Katrien M. Devos","is_ca":false},{"name":"Jeffrey L. Bennetzen","is_ca":false},{"name":"Turgay Ünver","is_ca":false},{"name":"Hikmet Budak","is_ca":false},{"name":"Patrick J. Gulick","is_ca":true},{"name":"Gábor Galiba","is_ca":false},{"name":"Balázs Kalapos","is_ca":false},{"name":"David R. Nelson","is_ca":false},{"name":"Pingchuan Li","is_ca":true},{"name":"Frank M. You","is_ca":true},{"name":"Ming‐Cheng Luo","is_ca":false},{"name":"Jan Dvořák","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02467774943096951,"gpt":0.2314548149552361,"spread":0.2067770655242666,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004541761,0.001091425,0.0006122899,0.001288808,0.0005132048,0.0008785077,0.0005954314,0.0003199375,0.01192597],"category_scores_gemma":[0.0007524818,0.0004419985,0.0009436979,0.001465566,0.0001432608,0.0004933519,0.0005426063,0.0009864612,0.008423736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004583701,"about_ca_system_score_gemma":0.0005793601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00342165,"about_ca_topic_score_gemma":0.004018532,"domain_scores_codex":[0.9997916,0.00002666368,0.00002837298,0.00007931343,0.00005177953,0.00002239757],"domain_scores_gemma":[0.9997824,0.00002862987,0.000038795,0.00003424185,0.0000815947,0.00003431819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001296941,0.00005684585,0.003646136,0.001832642,0.0001695396,0.000506809,0.0002908611,0.002041359,0.8515853,0.001693289,0.08641324,0.05046707],"study_design_scores_gemma":[0.000339643,0.0004333487,0.06759055,0.000328646,0.0003995743,0.001408068,0.0001859508,0.01502866,0.2044192,0.001799228,0.7079071,0.0001601796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1358013,0.002083652,0.09951522,0.0006242222,0.0004655813,0.001085321,0.7121432,0.02733737,0.02094414],"genre_scores_gemma":[0.03141083,0.0007684988,0.08517478,0.0001825402,0.00004220271,0.0004737563,0.8742638,0.002569617,0.005113982],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01192597,"threshold_uncertainty_score":0.03989631,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3043477368","doi":"10.1534/g3.120.400886","title":"Long-Term Reciprocal Gene Flow in Wild and Domestic Geese Reveals Complex Domestication History","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Domestication; Goose; Biology; Gene flow; Evolutionary biology; Genetic admixture; Genetic diversity; Zoology; Genetic variation; Genetics; Gene; Ecology; Population; Demography","authors":[{"name":"M. Heikkinen","is_ca":false},{"name":"Minna Ruokonen","is_ca":false},{"name":"Thomas A. White","is_ca":false},{"name":"Michelle Alexander","is_ca":false},{"name":"İslam Gündüz","is_ca":false},{"name":"Keith Dobney","is_ca":true},{"name":"Jouni Aspi","is_ca":false},{"name":"Jeremy B. Searle","is_ca":false},{"name":"Tanja Pyhäjärvi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0336495915817888,"gpt":0.2568302662465986,"spread":0.2231806746648098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007843935,0.0001291784,0.0004110101,0.001262934,0.0003180429,0.0006288664,0.0002877396,0.0003082176,0.001104328],"category_scores_gemma":[0.001820953,0.0001397213,0.0003607603,0.001413044,0.0004758892,0.0004210169,0.0005823708,0.0002832794,0.0001933199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001582594,"about_ca_system_score_gemma":0.0001318192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004323099,"about_ca_topic_score_gemma":0.009399655,"domain_scores_codex":[0.9995412,0.0001517504,0.00003321152,0.0001751686,0.00003823826,0.00006050024],"domain_scores_gemma":[0.9990409,0.0004320493,0.0001956844,0.0001258088,0.0001008612,0.0001046876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008831147,0.00002226105,0.9857178,0.00002338049,0.0002896348,0.0001351367,0.0005479589,0.0003229652,0.007363108,0.0001361145,0.0001073171,0.005246017],"study_design_scores_gemma":[0.000003219832,0.00001787073,0.9978963,0.00000571003,0.00003662536,0.0001355584,0.0002892902,0.001023614,0.0001695133,0.0001496836,0.0002668614,0.000005704092],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995641,0.00006892082,0.0001877064,0.000006325595,6.4797e-7,6.342832e-7,0.00009857502,0.000002305965,0.00007076731],"genre_scores_gemma":[0.9992293,0.00003057298,0.0002301193,0.000009471357,0.000001817356,0.000002100286,0.0004406025,0.000002895932,0.00005309721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004323099,"threshold_uncertainty_score":0.008595884,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2612128553","doi":"10.1534/g3.117.040691","title":"Insight into the Recent Genome Duplication of the Halophilic Yeast <i>Hortaea werneckii</i>: Combining an Improved Genome with Gene Expression and Chromatin Structure","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Division of Biological Infrastructure; University of California, Riverside; National Institute of Food and Agriculture; National Institutes of Health; Univerza v Ljubljani; U.S. Department of Agriculture","keywords":"Genome; Biology; Gene duplication; Extremophile; Comparative genomics; Gene; Genetics; Genomics; Computational biology; Gene prediction; Genome evolution; Thermophile","authors":[{"name":"Sunita Sinha","is_ca":true},{"name":"Stéphane Flibotte","is_ca":true},{"name":"Mauricio Neira","is_ca":true},{"name":"Sean Formby","is_ca":true},{"name":"Ana Plemenitaš","is_ca":false},{"name":"Nina Gunde‐Cimerman","is_ca":false},{"name":"Metka Lenassi","is_ca":false},{"name":"Cene Gostinčar","is_ca":false},{"name":"Jason Stajich","is_ca":false},{"name":"Corey Nislow","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01170212638367991,"gpt":0.2092019951095614,"spread":0.1974998687258815,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001838819,0.0002770038,0.0003381825,0.0003524474,0.0001778096,0.000383454,0.0002771013,0.0003160621,0.0007171651],"category_scores_gemma":[0.0002428077,0.0001906819,0.0002479285,0.0004599035,0.0001530748,0.0003640151,0.0003807797,0.0003596951,0.0002689912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002847698,"about_ca_system_score_gemma":0.0001972937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001314986,"about_ca_topic_score_gemma":0.001997421,"domain_scores_codex":[0.9999207,0.000008254522,0.000007215202,0.00003048742,0.00002111325,0.00001209709],"domain_scores_gemma":[0.9998565,0.00003649029,0.0000393032,0.00002324209,0.00002182528,0.00002267474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005281128,0.000004797068,0.00228851,0.00007440194,0.00001165664,0.00009269411,0.00003775537,0.0001698981,0.9944553,0.00007794944,0.00004451454,0.002689851],"study_design_scores_gemma":[0.00002411494,0.000286986,0.2738053,0.00007292376,0.0001593585,0.001556176,0.0006022611,0.005637156,0.6989701,0.0007179211,0.01811398,0.00005378609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860178,0.001296144,0.008345548,0.000172103,0.0000241493,0.0000214724,0.002951121,0.0002651499,0.000906657],"genre_scores_gemma":[0.9761514,0.001116293,0.01644486,0.0001062793,0.00001697632,0.00002777741,0.005230804,0.0001229131,0.0007826827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001314986,"threshold_uncertainty_score":0.002614677,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065961067","doi":"10.1534/g3.114.010942","title":"Genetic Diversity Analysis of Highly Incomplete SNP Genotype Data with Imputations: An Empirical Assessment","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Imputation (statistics); Missing data; Genotype; Statistics; Biology; Genotyping; Single-nucleotide polymorphism; Genetics; Mathematics; Gene","authors":[{"name":"Yong‐Bi Fu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0488946784287328,"gpt":0.3110095907001061,"spread":0.2621149122713733,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.06115032,0.0007990546,0.001504467,0.001513962,0.0008580491,0.001253356,0.001619863,0.001474604,0.0003659725],"category_scores_gemma":[0.131626,0.0006211838,0.001445776,0.001777353,0.002605171,0.002254849,0.001871837,0.002096528,0.0001257846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006142278,"about_ca_system_score_gemma":0.0005059916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001257974,"about_ca_topic_score_gemma":0.00116439,"domain_scores_codex":[0.9748647,0.01757654,0.001176465,0.00333478,0.002624443,0.000423156],"domain_scores_gemma":[0.7728899,0.1852614,0.01418824,0.01927428,0.007654707,0.0007313642],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005708247,0.0001830057,0.5696933,0.0005854028,0.002254326,0.000901954,0.001813964,0.3194048,0.006013916,0.00931927,0.0009964155,0.0882628],"study_design_scores_gemma":[0.00004478519,0.0002529614,0.09922084,0.0001920619,0.0003861481,0.0007305713,0.0003610406,0.8682939,0.00598123,0.02262495,0.001803941,0.0001076302],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5234001,0.0008477996,0.4741229,0.0004390601,0.00002225566,0.00007785825,0.0003447215,0.0001645151,0.0005808493],"genre_scores_gemma":[0.8982872,0.0003011105,0.1000426,0.0001096732,0.00003567616,0.00009158015,0.00090033,0.00006102706,0.0001709223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9388497,"threshold_uncertainty_score":0.3233976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}