{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":205,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":205,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"edff7eb0441d","filters":{"venue":"Genes Chromosomes and Cancer"}},"results":[{"id":"W1931360432","doi":"10.1002/gcc.22073","title":"Novel <i>YAP1‐TFE3</i> fusion defines a distinct subset of epithelioid hemangioendothelioma","year":2013,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Vascular Tumors and Angiosarcomas","field":"Medicine","cited_by":593,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"National Cancer Institute","keywords":"TFE3; Epithelioid hemangioendothelioma; Fusion gene; Biology; Gene rearrangement; Fluorescence in situ hybridization; Pathology; Hemangioendothelioma; Immunohistochemistry; Gene; Medicine; Genetics; Transcription factor; Immunology","authors":[{"name":"Cristina R. Antonescu","is_ca":false},{"name":"François Le Loarer","is_ca":false},{"name":"Juan‐Miguel Mosquera","is_ca":false},{"name":"Andrea Sboner","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"Chun‐Liang Chen","is_ca":false},{"name":"Hsiao‐Wei Chen","is_ca":false},{"name":"Nursat Pathan","is_ca":false},{"name":"Thomas Krausz","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"Ilan Weinreb","is_ca":true},{"name":"Mark A. Rubin","is_ca":false},{"name":"Meera Hameed","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01326953706473345,"gpt":0.2424441666132917,"spread":0.2291746295485583,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001369982,0.0002763228,0.0001890268,0.0003759298,0.0001651593,0.0002850691,0.0001599987,0.0002312091,0.0005870862],"category_scores_gemma":[0.0004421432,0.000138804,0.0001304017,0.0002368393,0.0003505146,0.0001915199,0.0002224047,0.0001782926,0.0002060954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001784329,"about_ca_system_score_gemma":0.00008528873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004366581,"about_ca_topic_score_gemma":0.0005767203,"domain_scores_codex":[0.9998878,0.000008231251,0.0000134072,0.00003443899,0.00002042423,0.00003577416],"domain_scores_gemma":[0.9997602,0.00005706128,0.00007238823,0.00003007297,0.00001866151,0.00006166172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007155357,0.00005681942,0.2890662,0.00007765737,0.00005614278,0.07333855,0.0005079471,0.0006188632,0.6233636,0.000345746,0.0002686547,0.01158428],"study_design_scores_gemma":[0.00004874086,0.0003933186,0.6253011,0.000009222714,0.00006379715,0.3155959,0.0004428347,0.002404969,0.05345373,0.0004459448,0.001816577,0.00002386181],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992004,0.0000634753,0.0003741131,0.000006721552,9.059941e-7,0.000004689152,0.00003722273,0.00001233357,0.0003002108],"genre_scores_gemma":[0.9996895,0.00002673296,0.0001559361,0.000004161313,0.000002825577,0.000002495659,0.00005633209,0.000002455115,0.00005956736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005870862,"threshold_uncertainty_score":0.001963973,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988159895","doi":"10.1002/gcc.20881","title":"<i>EWSR1‐ATF1</i> fusion is a novel and consistent finding in hyalinizing clear‐cell carcinoma of salivary gland","year":2011,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Salivary Gland Tumors Diagnosis and Treatment","field":"Medicine","cited_by":407,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; Mount Sinai Hospital; University of Toronto; Toronto General Hospital; University Health Network","funders":"","keywords":"Mucoepidermoid carcinoma; Myoepithelial cell; Pathology; Salivary gland; Biology; Fluorescence in situ hybridization; Carcinoma; Grading (engineering); Clear cell; Histology; Immunohistochemistry; Medicine; Gene; Genetics","authors":[{"name":"Cristina R. Antonescu","is_ca":true},{"name":"Nora Katabi","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"Yun Shao Sung","is_ca":false},{"name":"Raja R. Seethala","is_ca":false},{"name":"Richard C. Jordan","is_ca":false},{"name":"Bayardo Perez‐Ordoñez","is_ca":true},{"name":"Cherry Have","is_ca":true},{"name":"L. Sylvia","is_ca":true},{"name":"Iona Leong","is_ca":true},{"name":"Grace Bradley","is_ca":true},{"name":"Hagen Klieb","is_ca":true},{"name":"Ilan Weinreb","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0550636796574121,"gpt":0.2700695486434786,"spread":0.2150058689860665,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001515551,0.0002000243,0.0001552739,0.0005768454,0.0002178971,0.0002214153,0.0002011152,0.0004236159,0.001063431],"category_scores_gemma":[0.0003972875,0.0001160564,0.0001111388,0.000272686,0.0005304355,0.0001901606,0.000206084,0.0001947888,0.000185012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002096255,"about_ca_system_score_gemma":0.0001343986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007790357,"about_ca_topic_score_gemma":0.0007667139,"domain_scores_codex":[0.999878,0.000009694175,0.00001312185,0.00003586707,0.00003463047,0.00002855353],"domain_scores_gemma":[0.9996823,0.0000799632,0.0001054057,0.00003787973,0.00003145196,0.00006301075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002896556,0.00003047479,0.1045492,0.0001315737,0.00003690204,0.07572133,0.0004806271,0.0002152369,0.8085917,0.0004673839,0.0002893904,0.009196553],"study_design_scores_gemma":[0.00004978387,0.0003239543,0.3541462,0.00001506656,0.0001163576,0.4002136,0.0006021726,0.002446165,0.2367154,0.0006160196,0.004726374,0.00002905845],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983729,0.0002338209,0.0006068256,0.00002974035,0.000003645399,0.000007803708,0.00004118853,0.00003459681,0.0006693342],"genre_scores_gemma":[0.9995352,0.00004287601,0.0002559983,0.000009515529,0.000003522499,0.00000313551,0.00004074324,0.000002473245,0.0001064717],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001063431,"threshold_uncertainty_score":0.003557563,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134890602","doi":"10.1002/gcc.20457","title":"One hit, two hits, three hits, more? Genomic changes in the development of retinoblastoma","year":2007,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":279,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"National Cancer Institute; Canadian Institutes of Health Research; Health Canada","keywords":"Retinoblastoma; Biology; Candidate gene; Carcinogenesis; Genetics; Epigenetics; Comparative genomic hybridization; Cancer; Cancer research; Gene; Genome","authors":[{"name":"Timothy W. Corson","is_ca":true},{"name":"Brenda L. Gallie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07553100066633392,"gpt":0.3717115132941026,"spread":0.2961805126277687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005509043,0.00028852,0.0007453549,0.0008828953,0.0002499169,0.00113939,0.0003857751,0.0007282468,0.002276733],"category_scores_gemma":[0.0007926766,0.0001512591,0.000355801,0.0010509,0.0006278128,0.001608235,0.0004157444,0.0008871999,0.0007016018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006307978,"about_ca_system_score_gemma":0.0005814734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009389871,"about_ca_topic_score_gemma":0.001411639,"domain_scores_codex":[0.9997528,0.00004826638,0.00004076618,0.00006467773,0.0000669441,0.00002650776],"domain_scores_gemma":[0.9997699,0.0001102313,0.00003910333,0.00001063496,0.00004699032,0.00002317815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004405609,0.00006541733,0.009336945,0.01111344,0.0002990827,0.00352079,0.0008126235,0.000509922,0.0335815,0.0139544,0.03289804,0.8934672],"study_design_scores_gemma":[0.00003985811,0.0003516448,0.02738286,0.002446373,0.0005558978,0.02179236,0.001479187,0.0001825573,0.007863894,0.01724405,0.9205665,0.00009481882],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005032509,0.9856727,0.0008172008,0.004370131,0.0008686812,0.000007336106,0.0001052805,0.0000293001,0.003096898],"genre_scores_gemma":[0.02666764,0.9617664,0.001235618,0.003698677,0.001765107,0.00001568455,0.0002089942,0.00001820578,0.004623671],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002276733,"threshold_uncertainty_score":0.007616401,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974115274","doi":"10.1002/gcc.10111","title":"The role of <i>Alu</i> repeat clusters as mediators of recurrent chromosomal aberrations in tumors","year":2002,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; Princess Margaret Cancer Centre; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Alu element; Biology; Homologous recombination; Genetics; Chromosomal translocation; Non-allelic homologous recombination; Breakpoint; Gene duplication; Genome; Homologous chromosome; Repeated sequence; Human genome; DNA; Interspersed repeat; Ectopic recombination; Recombination; Chromosomal rearrangement; Gene; Chromosome; Genetic recombination; Karyotype","authors":[{"name":"Elena Kolomietz","is_ca":true},{"name":"M. Stephen Meyn","is_ca":true},{"name":"Ajay Pandita","is_ca":true},{"name":"Jeremy A. Squire","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01160558769226149,"gpt":0.2762907494978989,"spread":0.2646851618056374,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002405956,0.000204148,0.0002295467,0.0008977537,0.0002953759,0.000729078,0.0003526529,0.0004167618,0.0008665827],"category_scores_gemma":[0.000495638,0.0001643391,0.0001436099,0.0003751054,0.0003498693,0.0004361518,0.0004375477,0.0003113392,0.0003382639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003995889,"about_ca_system_score_gemma":0.0001853646,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006668447,"about_ca_topic_score_gemma":0.0003445497,"domain_scores_codex":[0.9998474,0.0000376027,0.000008843152,0.00002995542,0.00003976541,0.00003632572],"domain_scores_gemma":[0.9996235,0.00006722017,0.0001226538,0.00002604199,0.0000321714,0.0001283728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001431942,0.0001263626,0.03810416,0.0002808406,0.0001262801,0.003591514,0.0004838423,0.001520991,0.9135341,0.004786252,0.0005721243,0.03544164],"study_design_scores_gemma":[0.0002860085,0.002323256,0.3415971,0.0001174168,0.0003842188,0.01636302,0.001841089,0.0100153,0.585611,0.00903818,0.03232022,0.0001030492],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.9787722,0.01448934,0.002795148,0.0003443146,0.00002984101,0.00003167599,0.000112607,0.0001656165,0.003259286],"genre_scores_gemma":[0.9970089,0.001260927,0.0008489044,0.00003117067,0.0000227891,0.00001190269,0.00007009937,0.00001121774,0.0007341119],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.0008977537,"threshold_uncertainty_score":0.00289923,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1975306522","doi":"10.1002/gcc.10300","title":"Contrasting in vivo and in vitro fates of glioblastoma cell subpopulations with amplified <i>EGFR</i>","year":2003,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":218,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Cancer Institute","keywords":"In vivo; Cancer research; Biology; Mutation; Cell culture; In vitro; Mutant; Gene duplication; Cell; Epidermal growth factor receptor; Molecular biology; Gene; Cancer; Genetics","authors":[{"name":"Ajay Pandita","is_ca":true},{"name":"Kenneth Aldape","is_ca":false},{"name":"Gelareh Zadeh","is_ca":true},{"name":"Abhijit Guha","is_ca":true},{"name":"C. David James","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01026786905340996,"gpt":0.241848715877903,"spread":0.2315808468244931,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001951653,0.0001737703,0.0001939041,0.0001808632,0.0001472525,0.0003277418,0.00009059059,0.000151617,0.0004669914],"category_scores_gemma":[0.0001452505,0.0001395139,0.0001363134,0.000110848,0.0001162723,0.0001441247,0.0001185432,0.0003299189,0.0002662181],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001810721,"about_ca_system_score_gemma":0.0001294195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001275125,"about_ca_topic_score_gemma":0.002250657,"domain_scores_codex":[0.9998626,0.00003881921,0.00001354323,0.00002185655,0.00002475366,0.00003840114],"domain_scores_gemma":[0.9998299,0.00006010291,0.00002366694,0.00002146078,0.00002926696,0.00003544415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001918721,0.0000563957,0.001705368,0.00002104975,0.000006681879,0.00008383213,0.0001245188,0.0001052698,0.9960955,0.0001563,0.00003383098,0.00141943],"study_design_scores_gemma":[0.00001458124,0.0008178515,0.02570167,0.000007077586,0.00003256944,0.0005589997,0.0001949798,0.001525347,0.9694571,0.00007237786,0.001610756,0.000006596036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960278,0.0005634064,0.001967013,0.00002385438,0.00001077974,0.00001417535,0.0001791148,0.00001729445,0.001196512],"genre_scores_gemma":[0.9939965,0.00058352,0.002645953,0.00004047978,0.00001118119,0.00004123406,0.0006942059,0.00001730921,0.00196956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001275125,"threshold_uncertainty_score":0.002535403,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124794993","doi":"10.1002/gcc.22247","title":"<i>MAP2K1</i> and <i>MAP3K1</i> mutations in langerhans cell histiocytosis","year":2015,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Histiocytic Disorders and Treatments","field":"Medicine","cited_by":201,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"Histiocytosis Association","keywords":"Trametinib; MAPK/ERK pathway; Biology; Protein kinase A; Mutation; Kinase; Cancer research; Somatic cell; Langerhans cell histiocytosis; Molecular biology; Genetics; Gene; Medicine; Pathology","authors":[{"name":"David Nelson","is_ca":false},{"name":"Astrid G. S. van Halteren","is_ca":false},{"name":"Willemijn T. Quispel","is_ca":false},{"name":"Cor van den Bos","is_ca":false},{"name":"Judith V.M.G. Bovée","is_ca":false},{"name":"Bhumi Patel","is_ca":false},{"name":"Gayane Badalian‐Very","is_ca":false},{"name":"Paul Van Hummelen","is_ca":false},{"name":"Matthew D. Ducar","is_ca":false},{"name":"Ling Lin","is_ca":false},{"name":"Laura E. MacConaill","is_ca":false},{"name":"R. Maarten Egeler","is_ca":true},{"name":"Barrett J. Rollins","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02321877149226033,"gpt":0.2733697518558874,"spread":0.2501509803636271,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002325662,0.0002677581,0.0001499742,0.0004796727,0.0002055207,0.0002849594,0.0001556636,0.0002656355,0.0005349737],"category_scores_gemma":[0.0004623964,0.0001719418,0.0001712894,0.0002472044,0.000279071,0.0001126424,0.0001750916,0.0001808637,0.0002984449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000194529,"about_ca_system_score_gemma":0.0001430955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008328906,"about_ca_topic_score_gemma":0.001242765,"domain_scores_codex":[0.999804,0.00001935487,0.00002705169,0.00006202928,0.00006047057,0.00002723125],"domain_scores_gemma":[0.9998543,0.00003735886,0.00003905807,0.00001428852,0.00002837386,0.0000265558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005474579,0.00005795986,0.1659327,0.0000980707,0.00006325299,0.006534413,0.0001492294,0.0006488294,0.8145016,0.00007076653,0.0003940969,0.01100171],"study_design_scores_gemma":[0.00004529219,0.0002765177,0.6294596,0.00002102594,0.0001520364,0.03477161,0.0001758269,0.00231386,0.3292851,0.0002795325,0.003202464,0.00001720692],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983637,0.0002293773,0.0005969742,0.00002462092,0.000005366527,0.00001567273,0.00015737,0.00002232318,0.0005846694],"genre_scores_gemma":[0.9989328,0.0001070848,0.0005970132,0.00002549958,0.000005055432,0.000004955623,0.0001921428,0.000006324693,0.0001291756],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008328906,"threshold_uncertainty_score":0.001789689,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2895684263","doi":"10.1002/gcc.22671","title":"A novel group of spindle cell tumors defined by S100 and CD34 co‐expression shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes","year":2018,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"Neurofibromatosis and Schwannoma Cases","field":"Medicine","cited_by":197,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute; National Institutes of Health","keywords":"SOX10; CD34; Pathology; Stromal cell; Immunohistochemistry; Biology; Dermatofibrosarcoma protuberans; S100 protein; Sarcoma; Neural crest; Cancer research; Gene; Medicine; Stem cell; Cell biology","authors":[{"name":"Albert J.H. Suurmeijer","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Paolo Cotzia","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04205088015200043,"gpt":0.3107023791055343,"spread":0.2686514989535339,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003981763,0.000545028,0.0006985888,0.004834977,0.0002376931,0.0004846522,0.0003749843,0.0003721281,0.0005692117],"category_scores_gemma":[0.001252889,0.0001826821,0.000569264,0.00253879,0.0005237697,0.0003947261,0.0003646387,0.0001575442,0.0003713026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002226317,"about_ca_system_score_gemma":0.000644557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007699754,"about_ca_topic_score_gemma":0.001867044,"domain_scores_codex":[0.999571,0.0000516277,0.0001091279,0.000103529,0.0001260626,0.00003855019],"domain_scores_gemma":[0.998876,0.0002744409,0.0005696123,0.00007676459,0.0001301996,0.00007291064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0008998245,0.0001096353,0.3606148,0.01312057,0.001551748,0.09326121,0.0008557582,0.0009905171,0.06879058,0.0009791816,0.00481617,0.45401],"study_design_scores_gemma":[0.0001672089,0.0008282436,0.3598824,0.002152444,0.002265954,0.5662108,0.0008629327,0.00120742,0.01743161,0.002174816,0.04673524,0.00008084723],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.8433729,0.1375636,0.009285235,0.0003322969,0.0001042623,0.0004997716,0.002481248,0.0002718591,0.006088793],"genre_scores_gemma":[0.9624875,0.02895726,0.00444615,0.000237906,0.0001110637,0.0001201269,0.002005691,0.00002648307,0.001607824],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.004834977,"threshold_uncertainty_score":0.002105772,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015224186","doi":"10.1002/gcc.20549","title":"Amplification of 11q13 in ovarian carcinoma","year":2008,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; Vancouver Coastal Health Research Institute; University of British Columbia; BC Cancer Agency","funders":"","keywords":"Amplicon; Serous fluid; Biology; Ovarian cancer; Fluorescence in situ hybridization; Tissue microarray; Histology; Gene duplication; Ovarian carcinoma; Gene; Serous carcinoma; Pathology; Cancer research; Cancer; Medicine; Genetics; Chromosome; Polymerase chain reaction","authors":[{"name":"Lindsay Brown","is_ca":true},{"name":"Steve E. Kalloger","is_ca":true},{"name":"Melinda A. Miller","is_ca":true},{"name":"Ie‐Ming Shih","is_ca":false},{"name":"Steven E. McKinney","is_ca":false},{"name":"Jennifer L. Santos","is_ca":true},{"name":"K. Swenerton","is_ca":true},{"name":"Paul T. Spellman","is_ca":false},{"name":"Joe W. Gray","is_ca":false},{"name":"C. Blake Gilks","is_ca":true},{"name":"David G. Huntsman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03150732850157972,"gpt":0.2776967371653485,"spread":0.2461894086637688,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002583902,0.0001304416,0.000165982,0.001042139,0.0002259444,0.0002671923,0.0001306992,0.0002222461,0.001056685],"category_scores_gemma":[0.0008043415,0.0001753104,0.0001479267,0.0006046912,0.0002616549,0.0001117176,0.000349907,0.0001392952,0.0002511442],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002163567,"about_ca_system_score_gemma":0.0001587753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001820335,"about_ca_topic_score_gemma":0.002199941,"domain_scores_codex":[0.9997881,0.0000335149,0.00002016727,0.00005516795,0.0000624103,0.00004066651],"domain_scores_gemma":[0.9996814,0.00009355121,0.0001293411,0.00002544986,0.00004105251,0.00002934948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003676621,0.00001834368,0.8567895,0.00008527949,0.00005838579,0.003289393,0.0002700077,0.0003973937,0.1177056,0.0001180122,0.0001975213,0.02070279],"study_design_scores_gemma":[0.00001107357,0.00006937677,0.9790724,0.00001745354,0.00004456165,0.006881673,0.0001532705,0.000599183,0.01127743,0.0001596855,0.001707942,0.000005962903],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978753,0.0008973051,0.0004132974,0.00004120147,0.000003605501,0.000006661468,0.00008430146,0.00001174593,0.0006666877],"genre_scores_gemma":[0.9989791,0.0003586821,0.0002946918,0.00001358441,0.000003836269,0.000005945941,0.0001367822,0.000001747502,0.0002056162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001820335,"threshold_uncertainty_score":0.003619432,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999872588","doi":"10.1002/gcc.10026","title":"Genomic gains and losses are similar in genetic and histologic subsets of rhabdomyosarcoma, whereas amplification predominates in embryonal with anaplasia and alveolar subtypes","year":2001,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital","funders":"National Cancer Institute","keywords":"Biology; Comparative genomic hybridization; Rhabdomyosarcoma; Fluorescence in situ hybridization; Alveolar rhabdomyosarcoma; Gene duplication; Embryonal rhabdomyosarcoma; Amplicon; HRAS; Pathology; Genetics; Locus (genetics); Fusion gene; Cancer research; Sarcoma; Chromosome; Gene; Polymerase chain reaction; Medicine; Mutation","authors":[{"name":"Julia A. Bridge","is_ca":false},{"name":"Jian Liu","is_ca":false},{"name":"Stephen J. Qualman","is_ca":false},{"name":"Ron F. Suijkerbuijk","is_ca":false},{"name":"Gail D. Wenger","is_ca":false},{"name":"Ji Zhang","is_ca":false},{"name":"Xiaoying Wan","is_ca":false},{"name":"K. Scott Baker","is_ca":false},{"name":"Poul H. Sorensen","is_ca":true},{"name":"Frederic G. Barr","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01848954367824501,"gpt":0.2627739119829667,"spread":0.2442843683047217,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002630589,0.0002214324,0.0002200385,0.001023751,0.0001554293,0.0002368208,0.0001473326,0.0001413093,0.001328599],"category_scores_gemma":[0.0004594456,0.0001471168,0.0001285693,0.0003468767,0.0003212083,0.0001839674,0.0002528493,0.0001012434,0.000314881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001101659,"about_ca_system_score_gemma":0.0001086472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003906607,"about_ca_topic_score_gemma":0.001402514,"domain_scores_codex":[0.999787,0.00003555173,0.00003252135,0.00006116343,0.00005414699,0.00002959471],"domain_scores_gemma":[0.9997662,0.00005575733,0.00008894944,0.00003067693,0.00003088135,0.00002764746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006415271,0.00004027211,0.6037506,0.00008992288,0.0001360259,0.004901632,0.0004725599,0.0003827695,0.3673784,0.0002365185,0.00009095163,0.0218788],"study_design_scores_gemma":[0.0000157427,0.0001946705,0.9556507,0.00000928372,0.00006044348,0.02224285,0.0003635125,0.0002725887,0.0198105,0.0002325574,0.001139844,0.000007369367],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983159,0.0002939871,0.0005493618,0.000007204378,9.426756e-7,0.0000109206,0.00009717066,0.00001144202,0.0007129326],"genre_scores_gemma":[0.9988738,0.000149223,0.0005147251,0.00000810587,0.000003363886,0.00001220819,0.0002026445,0.000004492306,0.0002313857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001328599,"threshold_uncertainty_score":0.00444454,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149926770","doi":"10.1002/gcc.22206","title":"<i>ZFP36‐FOSB</i> fusion defines a subset of epithelioid hemangioma with atypical features","year":2014,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Vascular Tumors and Angiosarcomas","field":"Medicine","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute","keywords":"FOSB; Epithelioid hemangioendothelioma; Pathology; Hemangioma; Fusion gene; Nuclear atypia; Gene rearrangement; Biology; Medicine; Cancer research; Immunohistochemistry; Gene expression; Gene; Genetics","authors":[{"name":"Cristina R. Antonescu","is_ca":false},{"name":"Hsiao‐Wei Chen","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"David M. Panicek","is_ca":false},{"name":"Narasimhan P. Agaram","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"Thomas Krausz","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006592614719643994,"gpt":0.2296111669548315,"spread":0.2230185522351875,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001225154,0.0001941132,0.0001309992,0.0003974368,0.000148509,0.0002356197,0.0001471279,0.0001854597,0.0006898183],"category_scores_gemma":[0.000331069,0.0001023697,0.00009425072,0.0001877235,0.0003564583,0.0001946011,0.0002129716,0.0001353046,0.0001530251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001627938,"about_ca_system_score_gemma":0.00006679998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002977276,"about_ca_topic_score_gemma":0.0003685768,"domain_scores_codex":[0.9998983,0.000009735749,0.00001166246,0.00003452084,0.00001785991,0.00002780703],"domain_scores_gemma":[0.9998239,0.00003408366,0.00004894781,0.0000303453,0.00001604829,0.00004661431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007448067,0.0000646288,0.2382362,0.00007481458,0.00003849667,0.0490496,0.0005469724,0.0006526173,0.6967784,0.0007953065,0.000252634,0.01276563],"study_design_scores_gemma":[0.00005304612,0.000672631,0.5870518,0.0000170009,0.00007531189,0.2803308,0.0009205691,0.005900839,0.1198224,0.00144336,0.003683659,0.00002868416],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990615,0.00004618051,0.0003943267,0.00000593544,7.417789e-7,0.000004468067,0.00002892811,0.000009786148,0.0004481301],"genre_scores_gemma":[0.9996734,0.00001452019,0.0001918802,0.000003672291,0.000001717196,0.000001975864,0.00003299667,0.000001844006,0.00007799931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006898183,"threshold_uncertainty_score":0.002307653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2033896256","doi":"10.1002/gcc.10273","title":"High‐resolution mapping of amplifications and deletions in pediatric osteosarcoma by use of CGH analysis of cDNA microarrays","year":2003,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":160,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; Princess Margaret Cancer Centre; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Comparative genomic hybridization; Biology; Gene duplication; Genetics; Metaphase; Copy number analysis; Complementary DNA; Chromosome; Copy-number variation; Microarray; DNA microarray; Segmental duplication; Gene; Molecular biology; Genome; Gene family; Gene expression","authors":[{"name":"Jeremy A. Squire","is_ca":true},{"name":"Jianming Pei","is_ca":true},{"name":"Paula Marrano","is_ca":true},{"name":"Ben Beheshti","is_ca":true},{"name":"Jane Bayani","is_ca":true},{"name":"Gloria Lim","is_ca":true},{"name":"Laura Moldovan","is_ca":true},{"name":"Maria Zieleńska","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02750543438127551,"gpt":0.2648345432106733,"spread":0.2373291088293978,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001672609,0.0002881314,0.0002886282,0.0005948815,0.0002196533,0.0002511626,0.0002137357,0.0002679642,0.001180127],"category_scores_gemma":[0.0003376934,0.0002544568,0.0002255787,0.0004393807,0.0001812428,0.0001937818,0.0001444033,0.0005008818,0.0006168516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002846707,"about_ca_system_score_gemma":0.00023436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006417861,"about_ca_topic_score_gemma":0.001281937,"domain_scores_codex":[0.999772,0.00002567372,0.00001411424,0.0000797394,0.00007648473,0.00003199585],"domain_scores_gemma":[0.9998591,0.00005976862,0.00002928541,0.00001710867,0.00001966806,0.0000150136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002494047,0.000006322437,0.0004869474,0.00002505557,0.000004044604,0.00004632298,0.00001731031,0.0001946309,0.9966043,0.00005637513,0.00004203869,0.002491712],"study_design_scores_gemma":[0.00002782986,0.0002914494,0.06689367,0.00001798751,0.00008349575,0.001285255,0.0001783532,0.005725362,0.9120399,0.0004273521,0.01300819,0.00002127081],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9614557,0.001835782,0.02960347,0.0003272063,0.00004194908,0.0001217989,0.003919253,0.0003763544,0.002318501],"genre_scores_gemma":[0.9117486,0.002454031,0.0739508,0.0002027109,0.00004407422,0.0003474476,0.008163716,0.00008807371,0.003000513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001180127,"threshold_uncertainty_score":0.003947854,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1607683645","doi":"10.1002/gcc.22195","title":"Novel <i>PRKD</i> gene rearrangements and variant fusions in cribriform adenocarcinoma of salivary gland origin","year":2014,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Salivary Gland Tumors Diagnosis and Treatment","field":"Medicine","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto; University Health Network","funders":"National Cancer Institute","keywords":"Biology; Fusion gene; Adenocarcinoma; Fluorescence in situ hybridization; Salivary gland; Gene; Chromosomal translocation; Cancer; Molecular biology; Pathology; Cancer research; Genetics; Medicine","authors":[{"name":"Ilan Weinreb","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Laxmi MS Tirunagari","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Chun‐Liang Chen","is_ca":false},{"name":"Bayardo Perez‐Ordoñez","is_ca":true},{"name":"Blaise Clarke","is_ca":true},{"name":"Alena Skálová","is_ca":false},{"name":"Simion I. Chiosea","is_ca":false},{"name":"Raja R. Seethala","is_ca":false},{"name":"Daryl Waggott","is_ca":true},{"name":"Paul C. Boutros","is_ca":true},{"name":"Christine How","is_ca":true},{"name":"Fei‐Fei Liu","is_ca":true},{"name":"Jonathan C. Irish","is_ca":true},{"name":"David P. Goldstein","is_ca":true},{"name":"Ralph Gilbert","is_ca":true},{"name":"Nasir Ud Din","is_ca":false},{"name":"Adel Assaad","is_ca":false},{"name":"Jason L. Hornick","is_ca":false},{"name":"Lester D.�R. Thompson","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02352621981946048,"gpt":0.2741715928408607,"spread":0.2506453730214002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002342901,0.0002266087,0.0001769296,0.0006751196,0.0002471457,0.0003305407,0.0001707458,0.0002602351,0.0005691216],"category_scores_gemma":[0.0007471521,0.0001991529,0.0001744166,0.0003930355,0.0005333371,0.0001965863,0.0003535808,0.000189828,0.0001273222],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00032406,"about_ca_system_score_gemma":0.0001281854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001178008,"about_ca_topic_score_gemma":0.001383534,"domain_scores_codex":[0.9998005,0.0000283633,0.00003063238,0.00005377996,0.0000462547,0.00004047591],"domain_scores_gemma":[0.9997447,0.00007025654,0.0000923046,0.00002892795,0.00001534498,0.00004831789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001061821,0.00004718963,0.5423653,0.0001217082,0.00007598677,0.06036124,0.001273643,0.0007700881,0.3753099,0.0004011258,0.0001742378,0.01803784],"study_design_scores_gemma":[0.00006242357,0.0004491729,0.7543522,0.00001552986,0.00009890496,0.1927654,0.0007987208,0.002127246,0.0471071,0.0003858672,0.001810037,0.00002741603],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995065,0.0001036989,0.0001822662,0.000007992455,6.090957e-7,0.000004206983,0.00002295974,0.000006824844,0.0001650007],"genre_scores_gemma":[0.9997367,0.00003693671,0.000155906,0.000004475165,0.00000129683,0.000002580929,0.00002627526,0.00000117683,0.00003453923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001178008,"threshold_uncertainty_score":0.002351224,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005034045","doi":"10.1002/gcc.1103","title":"Analysis of secondary chromosomal alterations in 165 cases of follicular lymphoma with t(14;18)","year":2001,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":155,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency","keywords":"Follicular lymphoma; Immunophenotyping; Lymphoma; Biology; Histopathology; Pathology; Gene duplication; Cytogenetics; Karyotype; Follicular phase; Chromosomal translocation; Chromosome; Immunology; Medicine; Genetics; Gene; Flow cytometry","authors":[{"name":"Douglas E. Horsman","is_ca":true},{"name":"Joseph M. Connors","is_ca":true},{"name":"Tapio Pantzar","is_ca":true},{"name":"Randy D. Gascoyne","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01691524409890805,"gpt":0.2761487673320068,"spread":0.2592335232330988,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004042766,0.0002957464,0.0003287506,0.001620964,0.0003400756,0.0003512127,0.0002870464,0.0003253517,0.0007762919],"category_scores_gemma":[0.001754554,0.0003621413,0.0002783554,0.0007406252,0.000399975,0.0002058323,0.0004864454,0.0002213843,0.0002611836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002442174,"about_ca_system_score_gemma":0.0001837818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00193961,"about_ca_topic_score_gemma":0.001772359,"domain_scores_codex":[0.9994679,0.0000858742,0.00007479174,0.0001155533,0.0001615777,0.00009427802],"domain_scores_gemma":[0.9992005,0.0002071675,0.0002846326,0.00009342999,0.00009233437,0.0001218448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002891823,0.00006634682,0.9616635,0.00003834027,0.0000449057,0.006232069,0.0006478123,0.000100262,0.02153342,0.00003050486,0.0001177144,0.009235909],"study_design_scores_gemma":[0.00002298214,0.0004714493,0.9765785,0.00000620843,0.00004145105,0.01952731,0.0002968614,0.0002232219,0.001952612,0.0000333299,0.000835281,0.00001077155],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996144,0.000127054,0.0001153547,0.000002863766,0.000001296642,0.000006621336,0.00004129028,0.000005157125,0.00008597322],"genre_scores_gemma":[0.9991428,0.0001109682,0.0002976821,0.000009239539,0.000005410934,0.0000118341,0.0003073543,0.000003375253,0.0001113166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00193961,"threshold_uncertainty_score":0.003856599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2096087550","doi":"10.1002/(sici)1098-2264(200004)27:4<337::aid-gcc1>3.0.co;2-1","title":"Novel genomic imbalances in embryonal rhabdomyosarcoma revealed by comparative genomic hybridization and fluorescence in situ hybridization: An Intergroup Rhabdomyosarcoma Study","year":2000,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":153,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital","funders":"National Cancer Institute","keywords":"Rhabdomyosarcoma; Comparative genomic hybridization; Fluorescence in situ hybridization; Biology; Locus (genetics); Chromosomal region; In situ hybridization; Chromosome; Genetics; Molecular biology; Pathology; Cancer research; Gene; Sarcoma; Medicine","authors":[{"name":"Julia A. Bridge","is_ca":false},{"name":"Jian Liu","is_ca":false},{"name":"Vines Weibolt","is_ca":false},{"name":"K. Scott Baker","is_ca":false},{"name":"Deborah Perry","is_ca":false},{"name":"Robert A. Kruger","is_ca":false},{"name":"Stephen J. Qualman","is_ca":false},{"name":"Frederic G. Barr","is_ca":false},{"name":"Poul H. Sorensen","is_ca":true},{"name":"Timothy J. Triche","is_ca":false},{"name":"Ron F. Suijkerbuijk","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01987602650998233,"gpt":0.2901228097893571,"spread":0.2702467832793748,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003092755,0.0002536892,0.0002466883,0.0007470734,0.0002341267,0.0001717522,0.0001327774,0.0002489986,0.0009612459],"category_scores_gemma":[0.0004007431,0.0001388381,0.0001580893,0.0002241012,0.0002716949,0.0001657465,0.000243314,0.000149126,0.000173192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001707974,"about_ca_system_score_gemma":0.00009551933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003994339,"about_ca_topic_score_gemma":0.0007337735,"domain_scores_codex":[0.9998167,0.00003514181,0.000017735,0.00005100693,0.00004404871,0.00003526875],"domain_scores_gemma":[0.9998525,0.00003846112,0.00003641505,0.00002376511,0.00001634242,0.00003242512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001438478,0.0001862752,0.2979177,0.000076001,0.0001009845,0.02573278,0.001161259,0.0004518285,0.6551916,0.0002334575,0.0001738097,0.01733584],"study_design_scores_gemma":[0.00009049253,0.001711994,0.8914084,0.00001291545,0.0001686678,0.04551087,0.0007495873,0.001144383,0.05705399,0.0002526195,0.001874655,0.00002143552],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994666,0.00006871538,0.0002065189,0.000006430386,0.000001120692,0.000006785905,0.00001687383,0.000005322732,0.0002217591],"genre_scores_gemma":[0.999551,0.00003683754,0.000220496,0.000006133025,0.000003198382,0.000006314981,0.00005417144,0.000002243931,0.0001196099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009612459,"threshold_uncertainty_score":0.003215671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124641706","doi":"10.1002/gcc.22063","title":"Frequent <i>PLAG1</i> gene rearrangements in skin and soft tissue myoepithelioma with ductal differentiation","year":2013,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Salivary Gland Tumors Diagnosis and Treatment","field":"Medicine","cited_by":151,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network","funders":"National Cancer Institute","keywords":"Myoepithelioma; Soft tissue; Gene; Biology; Myoepithelial cell; Pathology; Medicine; Genetics; Immunohistochemistry","authors":[{"name":"Cristina R. Antonescu","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"Sung Yun Shao","is_ca":false},{"name":"Juan‐Miguel Mosquera","is_ca":false},{"name":"Ilan Weinreb","is_ca":true},{"name":"Nora Katabi","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008586892626509362,"gpt":0.2411957601670036,"spread":0.2326088675404942,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001631544,0.0002297208,0.0001768748,0.0007182303,0.0001590324,0.0002719782,0.0001237156,0.0002386398,0.0008360489],"category_scores_gemma":[0.0004169792,0.0001772161,0.0001311731,0.0003297928,0.0003426449,0.0001733665,0.0002353828,0.0001519733,0.0003053944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001413938,"about_ca_system_score_gemma":0.00007900752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003465181,"about_ca_topic_score_gemma":0.0005344526,"domain_scores_codex":[0.9998131,0.00003059049,0.00002580635,0.00005110647,0.00004245653,0.00003689411],"domain_scores_gemma":[0.9997862,0.00004050232,0.00008892179,0.00002605915,0.00001628607,0.00004196808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000533422,0.0000352385,0.3545727,0.00008053998,0.00005632605,0.02811667,0.0003814567,0.0002048043,0.6071754,0.0001675387,0.0001247843,0.00855112],"study_design_scores_gemma":[0.00003454537,0.0003347175,0.7586576,0.00001493191,0.0001012155,0.1551853,0.0003983781,0.0008783044,0.08259925,0.0002332672,0.001546225,0.00001628993],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989873,0.0001425214,0.0002616002,0.000006943576,8.991942e-7,0.000006730458,0.00003171117,0.00001526222,0.0005469726],"genre_scores_gemma":[0.9995835,0.00005403147,0.000202627,0.000005848269,0.000001558562,0.000003831111,0.00003871987,0.000002696413,0.0001072928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008360489,"threshold_uncertainty_score":0.002796829,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138537095","doi":"10.1002/gcc.10314","title":"Identification of cytogenetic subgroups and karyotypic pathways of clonal evolution in follicular lymphomas","year":2003,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":136,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; Deutsche Krebshilfe; Cancerfonden","keywords":"Biology; Identification (biology); Genetics; Somatic evolution in cancer; Cancer research; Follicular lymphoma; Follicular phase; Computational biology; Evolutionary biology; Lymphoma; Cancer; Immunology","authors":[{"name":"Mattias Höglund","is_ca":false},{"name":"Laurie H. Sehn","is_ca":true},{"name":"Joseph M. Connors","is_ca":true},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"Reiner Siebert","is_ca":false},{"name":"Torbjörn Säll","is_ca":false},{"name":"Felix Mitelman","is_ca":false},{"name":"Douglas E. Horsman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01238922168142641,"gpt":0.2461418282064521,"spread":0.2337526065250257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003268976,0.0002214263,0.000274213,0.001431326,0.0001558413,0.0002899084,0.0001454243,0.0001714675,0.0006421464],"category_scores_gemma":[0.001282344,0.0001114811,0.0002681976,0.0007238866,0.0002322314,0.0001605339,0.0003310374,0.0001898044,0.000109559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001623519,"about_ca_system_score_gemma":0.0002299272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001010467,"about_ca_topic_score_gemma":0.001090636,"domain_scores_codex":[0.9997827,0.00004205051,0.00002817333,0.00004946352,0.00005648755,0.00004118864],"domain_scores_gemma":[0.9993729,0.000169338,0.0002625409,0.00005781741,0.00006441822,0.00007289121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006481613,0.00004586433,0.9131135,0.00003200228,0.00007474372,0.0003389807,0.0002818736,0.001238313,0.05592899,0.0002005399,0.0000849213,0.02801208],"study_design_scores_gemma":[0.00001174281,0.0001761967,0.9922577,0.000003832934,0.0000407473,0.0009569144,0.0001580582,0.002941659,0.002856313,0.0004066215,0.0001812768,0.000008978035],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993597,0.00005150786,0.0004346911,0.00000548672,4.227581e-7,0.000008148779,0.0000509391,0.000007603584,0.00008145745],"genre_scores_gemma":[0.9992374,0.00003179671,0.0005178236,0.000001965815,0.000002147442,0.0000090993,0.000147252,0.000002425465,0.00005011229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001431326,"threshold_uncertainty_score":0.002148211,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001171502","doi":"10.1002/gcc.10232","title":"Non‐muscle myosin heavy chain (MYH9): A new partner fused to ALK in anaplastic large cell lymphoma","year":2003,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Children's Hospital; BC Cancer Agency","funders":"National Cancer Institute; National Institutes of Health","keywords":"Anaplastic lymphoma kinase; Molecular biology; Fusion protein; Fusion gene; Biology; Anaplastic large-cell lymphoma; Complementary DNA; Fluorescence in situ hybridization; Tyrosine; Gene; Chemistry; Biochemistry; Lymphoma; Recombinant DNA; Chromosome","authors":[{"name":"Laurence Lamant","is_ca":false},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"Marie Michèle Duplantier","is_ca":false},{"name":"Florence Armstrong","is_ca":false},{"name":"Ashraf Raghab","is_ca":false},{"name":"Mukesh Chhanabhai","is_ca":true},{"name":"Evica Rajcan‐Separovic","is_ca":true},{"name":"Janie Raghab","is_ca":false},{"name":"Georges Delsol","is_ca":false},{"name":"Estelle Espinos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01285533880630526,"gpt":0.2627055680012933,"spread":0.249850229194988,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001848099,0.0002780352,0.0001521338,0.0002422904,0.0002675063,0.0003453426,0.000317971,0.0009210764,0.0006871363],"category_scores_gemma":[0.0001491631,0.0001822545,0.0001829659,0.0001921753,0.0002949664,0.0003480736,0.0004322988,0.0004398563,0.0005409708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003588114,"about_ca_system_score_gemma":0.0001564578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001698612,"about_ca_topic_score_gemma":0.0002625202,"domain_scores_codex":[0.9998665,0.00002201082,0.00001240372,0.00003539464,0.00003188763,0.00003169888],"domain_scores_gemma":[0.9999331,0.00001569457,0.00001540269,0.000007366615,0.000003341107,0.00002510665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00060581,0.000173153,0.005303205,0.0001454741,0.00002606358,0.02744497,0.0001107558,0.0003806183,0.9494502,0.001077248,0.000412596,0.01487004],"study_design_scores_gemma":[0.0004474859,0.001603172,0.02929492,0.00003038836,0.0002390748,0.2641633,0.0001634709,0.007314998,0.6595065,0.001343743,0.03585835,0.00003459584],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916427,0.003091221,0.003229649,0.0002852099,0.00003885854,0.00002674504,0.00007995467,0.0001154858,0.001490201],"genre_scores_gemma":[0.9954904,0.0009430178,0.002158297,0.00006321315,0.00003522229,0.00001489106,0.00020941,0.00001034409,0.00107513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009210764,"threshold_uncertainty_score":0.002603352,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015452754","doi":"10.1002/gcc.10132","title":"Spectral karyotyping identifies recurrent complex rearrangements of chromosomes 8, 17, and 20 in osteosarcomas","year":2002,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Kingston General Hospital; Hospital for Sick Children; BC Children's Hospital; University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Institutes of Health; University of Nebraska Medical Center","keywords":"Karyotype; Biology; Chromosome; Chromosomal rearrangement; Subtelomere; Breakpoint; Ploidy; Gene rearrangement; Gene duplication; Genetics; Chromosome instability; Chromosomal translocation; Molecular biology; Gene","authors":[{"name":"Jane Bayani","is_ca":true},{"name":"Maria Zieleńska","is_ca":true},{"name":"Ajay Pandita","is_ca":true},{"name":"Khaldoun Al‐Romaih","is_ca":true},{"name":"Jana Karásková","is_ca":true},{"name":"Karen J. Harrison","is_ca":true},{"name":"Julia A. Bridge","is_ca":false},{"name":"Poul H. Sorensen","is_ca":true},{"name":"Paul S. Thorner","is_ca":true},{"name":"Jeremy A. Squire","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0191101075615034,"gpt":0.2508487495979556,"spread":0.2317386420364522,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001619426,0.0002490577,0.0001798508,0.001096074,0.0001220884,0.0002150771,0.00009397861,0.0001839218,0.0009918035],"category_scores_gemma":[0.0004047467,0.0001643352,0.0001597508,0.0003696249,0.0002244958,0.0001415704,0.0002684378,0.0001146267,0.0002175359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001506426,"about_ca_system_score_gemma":0.00011191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004739925,"about_ca_topic_score_gemma":0.0009907556,"domain_scores_codex":[0.9998744,0.00001554106,0.00001375284,0.00002575335,0.00004024045,0.00003036275],"domain_scores_gemma":[0.9997837,0.00005846102,0.00007385761,0.00002160036,0.00002789835,0.00003450286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001212867,0.00001010635,0.02574705,0.00003015952,0.00001254637,0.0006479019,0.00008591024,0.0001663056,0.9694033,0.00005238872,0.00002825399,0.003694726],"study_design_scores_gemma":[0.00004048573,0.0007754551,0.6286482,0.00002069808,0.0001473407,0.01388036,0.0004235376,0.00342194,0.3483786,0.0005258549,0.003715285,0.00002217951],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984623,0.000180028,0.0009801834,0.000007723524,0.000001027113,0.000006458589,0.00006815742,0.00001912075,0.0002749147],"genre_scores_gemma":[0.9978623,0.0002708898,0.001283368,0.000008959389,0.000002979091,0.00001071411,0.0002699945,0.00000723504,0.0002837185],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001096074,"threshold_uncertainty_score":0.003317893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967520990","doi":"10.1002/gcc.20028","title":"A fluorescence in situ hybridization study of <i>ETV6‐NTRK3</i> fusion gene in secretory breast carcinoma","year":2004,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Cancer and Skin Lesions","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"","keywords":"Fusion gene; ETV6; Fluorescence in situ hybridization; Biology; Chromosomal translocation; Tissue microarray; Chromosome 12; Molecular biology; Pathology; In situ hybridization; Cancer research; Chromosome; Gene; Gene expression; Cancer; Medicine; Genetics","authors":[{"name":"Nikita Makretsov","is_ca":true},{"name":"May He","is_ca":true},{"name":"Malcolm Hayes","is_ca":true},{"name":"Stephen Chia","is_ca":true},{"name":"Doug Horsman","is_ca":true},{"name":"Poul H. Sorensen","is_ca":false},{"name":"David G. Huntsman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01205220516287952,"gpt":0.2599426885701114,"spread":0.2478904834072319,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002426089,0.0002560084,0.0002685614,0.0005108215,0.0002862416,0.0002397369,0.0002771261,0.0005507746,0.0008518586],"category_scores_gemma":[0.0003604161,0.0002386188,0.0002393977,0.0003188283,0.0003639589,0.0002509996,0.0001871537,0.0002680958,0.0002696629],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003821875,"about_ca_system_score_gemma":0.0001852579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00124363,"about_ca_topic_score_gemma":0.0009362485,"domain_scores_codex":[0.9998492,0.00002334925,0.00001200846,0.00004336158,0.00002717761,0.00004485812],"domain_scores_gemma":[0.9998728,0.00005427485,0.00001580249,0.00001731244,0.0000209699,0.00001875758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001173685,0.00002494837,0.003045626,0.00004223347,0.00001052158,0.002444553,0.0001289048,0.0001567801,0.9922194,0.0001187192,0.00003004164,0.00166084],"study_design_scores_gemma":[0.00008880246,0.001425943,0.093863,0.00002778395,0.0001591044,0.04728501,0.001107049,0.006297008,0.8433757,0.0004981559,0.005831875,0.0000405165],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953434,0.0006905698,0.002291044,0.00006787683,0.00001367708,0.00002025216,0.00005390643,0.00002740352,0.0014918],"genre_scores_gemma":[0.9971769,0.0004039848,0.001791557,0.00002140768,0.000005823926,0.00001892073,0.0000918453,0.000005386801,0.0004842252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00124363,"threshold_uncertainty_score":0.002849817,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139100560","doi":"10.1002/gcc.20263","title":"Expression analysis of 6p22 genomic gain in retinoblastoma","year":2005,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Retinoblastoma; Retina; Biology; Gene; Messenger RNA; Cancer research; Cancer; Molecular biology; Genetics; Neuroscience","authors":[{"name":"M Orlic-Milacic","is_ca":true},{"name":"Clarellen Spencer","is_ca":true},{"name":"Lisa Wang","is_ca":true},{"name":"Brenda L. Gallie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01163640901832278,"gpt":0.2929629329494632,"spread":0.2813265239311404,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009330301,0.0002208143,0.000180892,0.000571086,0.0001059327,0.0002130746,0.00008086409,0.0001946941,0.001144316],"category_scores_gemma":[0.0002207587,0.0001372105,0.0001657081,0.0002398752,0.0001524752,0.00009189104,0.0001575596,0.0002109028,0.0003390948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002241965,"about_ca_system_score_gemma":0.0001024864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007985873,"about_ca_topic_score_gemma":0.0007815909,"domain_scores_codex":[0.9999017,0.00001074264,0.000005742183,0.00002687013,0.00003573803,0.00001927624],"domain_scores_gemma":[0.9998868,0.0000277007,0.00003783971,0.00001188937,0.00001521858,0.00002059087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006750856,0.000006155163,0.001847317,0.00001563231,0.000004862554,0.0001470381,0.00001698983,0.00003578578,0.9970205,0.00002168238,0.00001088407,0.0008056476],"study_design_scores_gemma":[0.00001349041,0.0003372548,0.1275443,0.00000685171,0.00003663368,0.002842203,0.00006525058,0.001063764,0.8659001,0.00006845051,0.002112867,0.000008801849],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976533,0.0005831473,0.000996456,0.00001737099,0.000003302666,0.000008854057,0.0002876014,0.00004150445,0.0004084423],"genre_scores_gemma":[0.996694,0.0003879016,0.00126344,0.0000119363,0.000003302159,0.00001443115,0.0006836305,0.00001030024,0.0009311163],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001144316,"threshold_uncertainty_score":0.003828108,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097502584","doi":"10.1002/gcc.20219","title":"Molecular characterization of the spectrum of genomic deletions in the mismatch repair genes <i>MSH2</i>, <i>MLH1</i>, <i>MSH6,</i> and <i>PMS2</i> responsible for hereditary nonpolyposis colorectal cancer (HNPCC)","year":2005,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"MSH2; Genetics; Biology; PMS2; MLH1; MSH6; Alu element; DNA mismatch repair; Locus (genetics); Gene; DNA repair; Genome; Human genome","authors":[{"name":"Heleen van der Klift","is_ca":false},{"name":"Juul Wijnen","is_ca":false},{"name":"Anja Wagner","is_ca":false},{"name":"Paul Verkuilen","is_ca":false},{"name":"Carli M.J. Tops","is_ca":false},{"name":"Robyn Otway","is_ca":false},{"name":"Maija R.J. Kohonen‐Corish","is_ca":false},{"name":"Hans F. A. Vasen","is_ca":false},{"name":"Cristina Oliani","is_ca":false},{"name":"Daniela Barana","is_ca":false},{"name":"Pål Møller","is_ca":false},{"name":"C.D. DeLozier-Blanchet","is_ca":false},{"name":"Pierre Hutter","is_ca":false},{"name":"William D. Foulkes","is_ca":true},{"name":"Henry T. Lynch","is_ca":false},{"name":"John Burn","is_ca":false},{"name":"Gabriela Möslein","is_ca":false},{"name":"Riccardo Fodde","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00982100851617139,"gpt":0.2501610933731483,"spread":0.2403400848569769,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001917963,0.0002036618,0.0001770254,0.0009429901,0.0001198413,0.0001969229,0.000145658,0.0002616863,0.0008834464],"category_scores_gemma":[0.0007199675,0.0001386345,0.000129009,0.0003772362,0.0002711174,0.0001084872,0.0001603217,0.0001447512,0.000224962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008484761,"about_ca_system_score_gemma":0.00008229727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00045348,"about_ca_topic_score_gemma":0.0004339406,"domain_scores_codex":[0.9998471,0.00002311043,0.00001351191,0.000054343,0.00003124843,0.00003077559],"domain_scores_gemma":[0.9995524,0.0001494259,0.0001360508,0.00003533264,0.00004660663,0.00008012593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005838875,0.00009985118,0.666015,0.0000774607,0.00009745881,0.001693963,0.0003747972,0.0001410438,0.3206212,0.00008267783,0.0001171425,0.01009546],"study_design_scores_gemma":[0.00001651524,0.0004209031,0.9822172,0.00000708035,0.00005041998,0.005821276,0.0001399558,0.0002016142,0.01025747,0.00004128721,0.0008216563,0.00000480198],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995239,0.0001551607,0.0001060911,0.000005307162,7.723278e-7,0.00000326202,0.00008611405,0.000002938971,0.0001164886],"genre_scores_gemma":[0.9991455,0.0001640345,0.0002151769,0.00001021028,0.000004048345,0.000007093895,0.0003120976,0.000002820099,0.0001389941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009429901,"threshold_uncertainty_score":0.002955496,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995868292","doi":"10.1002/gcc.20761","title":"Characterization of the 12q15 <i>MDM2</i> and 12q13‐14 <i>CDK4</i> amplicons and clinical correlations in osteosarcoma","year":2010,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Amplicon; Gene duplication; Osteosarcoma; Mdm2; Gene; Biology; Univariate; Univariate analysis; Cancer research; Polymerase chain reaction; Multivariate analysis; Genetics; Multivariate statistics; Internal medicine; Medicine; Computer science","authors":[{"name":"Salvador Mejia‐Guerrero","is_ca":true},{"name":"Michael Quejada","is_ca":true},{"name":"Nalan Gökgöz","is_ca":true},{"name":"Mona Gill","is_ca":true},{"name":"Robert Parkes","is_ca":true},{"name":"Jay S. Wunder","is_ca":true},{"name":"Irene L. Andrulis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01757692754473431,"gpt":0.2966169728804731,"spread":0.2790400453357388,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000311028,0.0001878778,0.0002092742,0.001104633,0.0001089878,0.0002764543,0.0001388033,0.000228027,0.0008022193],"category_scores_gemma":[0.0007374894,0.0001702621,0.0001392061,0.0004193938,0.0002974269,0.0001426352,0.0002096027,0.0001566086,0.0001820245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009876272,"about_ca_system_score_gemma":0.00009505547,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005392699,"about_ca_topic_score_gemma":0.0007650841,"domain_scores_codex":[0.9997864,0.00003040679,0.00003095788,0.00005407048,0.00005036714,0.00004772796],"domain_scores_gemma":[0.9994689,0.0001497131,0.0002036382,0.00002403538,0.00005255219,0.0001012488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003747486,0.00003866289,0.9167568,0.00002282179,0.00002807712,0.0007322976,0.0001107614,0.0001018412,0.07575237,0.0000318882,0.00003144794,0.006018186],"study_design_scores_gemma":[0.000007372833,0.0001450711,0.9906565,0.000003275471,0.00001911231,0.002299715,0.00007661911,0.0002981114,0.00622903,0.00003168276,0.0002298579,0.000003590831],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995534,0.0001443186,0.0001697951,0.000004700244,8.242709e-7,0.000003484756,0.00002933215,0.000002948041,0.0000911741],"genre_scores_gemma":[0.9995263,0.00006462639,0.0002159215,0.000004834524,0.000002866558,0.000004967509,0.000100824,0.0000012136,0.00007852354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001104633,"threshold_uncertainty_score":0.002683699,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2946518384","doi":"10.1002/gcc.22767","title":"The histologic spectrum of soft tissue spindle cell tumors with <i>NTRK3</i> gene rearrangements","year":2019,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Soft tissue tumor case studies","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"NIH Clinical Center; National Cancer Institute","keywords":"Biology; Immunohistochemistry; ETV6; Fluorescence in situ hybridization; CD34; Pathology; Dermatofibrosarcoma protuberans; Histology; Fusion gene; Gene rearrangement; Cancer research; Chromosomal translocation; Medicine; Gene; Chromosome; Immunology","authors":[{"name":"Albert J.H. Suurmeijer","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Hsuan‐Ying Huang","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008649458240622512,"gpt":0.2418766311977134,"spread":0.2332271729570908,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001884518,0.0003169511,0.0002141063,0.000883929,0.000176436,0.0002391865,0.0001265555,0.0001133531,0.001574663],"category_scores_gemma":[0.0004399136,0.0001097415,0.000146474,0.0003337726,0.000230316,0.0001386277,0.0003007095,0.0001131465,0.0004515133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007477104,"about_ca_system_score_gemma":0.00009795592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002971627,"about_ca_topic_score_gemma":0.0006024276,"domain_scores_codex":[0.9998937,0.00001174361,0.00001897673,0.00002202389,0.00002191388,0.00003167535],"domain_scores_gemma":[0.9996539,0.00006727602,0.000111421,0.00003846796,0.00003736694,0.0000914707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003206825,0.00005674754,0.8506964,0.00006077009,0.00005378732,0.04298967,0.0003686896,0.0002401748,0.08664344,0.0001291506,0.0002427465,0.01819769],"study_design_scores_gemma":[0.00001769467,0.0003463468,0.7506423,0.00001390121,0.00004301771,0.2365422,0.000425722,0.0004325109,0.01025373,0.0001935375,0.001077482,0.00001161969],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982067,0.0001281013,0.0004824563,0.000007786041,0.000002180859,0.00001415712,0.0001271559,0.00002157291,0.001009874],"genre_scores_gemma":[0.9993619,0.0000645226,0.0002255,0.000005894859,0.000003745693,0.000006206465,0.0001312255,0.000004141125,0.0001969836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001574663,"threshold_uncertainty_score":0.005267799,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1528574020","doi":"10.1002/gcc.22129","title":"Expanding the clinical phenotype of hereditary <i>BAP1</i> cancer predisposition syndrome, reporting three new cases","year":2013,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Occupational and environmental lung diseases","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute; National Eye Institute; National Institutes of Health","keywords":"BAP1; Medicine; Mesothelioma; Germline mutation; Cancer; Germline; Cancer syndrome; Renal cell carcinoma; Genetic predisposition; Melanoma; Family history; Oncology; Cancer research; Internal medicine; Mutation; Pathology; Disease; Biology; Gene; Genetics","authors":[{"name":"Robert Pilarski","is_ca":false},{"name":"Colleen M. Cebulla","is_ca":false},{"name":"James B. Massengill","is_ca":false},{"name":"Karan Rai","is_ca":false},{"name":"Thereasa A. Rich","is_ca":false},{"name":"Louise C. Strong","is_ca":false},{"name":"Barbara McGillivray","is_ca":true},{"name":"Mary‐Jill Asrat","is_ca":true},{"name":"Frederick H. Davidorf","is_ca":false},{"name":"Mohamed H. Abdel‐Rahman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04318091177106038,"gpt":0.3347856111725976,"spread":0.2916046994015373,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003769696,0.001282962,0.0004686052,0.001469677,0.001227305,0.0007368918,0.0006700634,0.001150093,0.001728739],"category_scores_gemma":[0.002090469,0.0006118801,0.00083751,0.0009946873,0.001368455,0.0004145852,0.001123655,0.001072475,0.0006295927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004757448,"about_ca_system_score_gemma":0.000328687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00182633,"about_ca_topic_score_gemma":0.002176282,"domain_scores_codex":[0.9993837,0.00007467782,0.0000835977,0.0001905525,0.0001145767,0.0001527814],"domain_scores_gemma":[0.9987057,0.0003530394,0.0003422033,0.0001775617,0.0001346866,0.0002868176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.0002278293,0.0002159891,0.283442,0.0001955136,0.0001393547,0.6476375,0.002037757,0.0004834299,0.03014793,0.0008669128,0.003859271,0.03074662],"study_design_scores_gemma":[0.00002795531,0.0001123047,0.06448378,0.00001951268,0.00006524142,0.9269115,0.0001706982,0.0003052814,0.003467734,0.0002431113,0.004166398,0.00002645055],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894207,0.001234383,0.003183686,0.0004270764,0.00009899651,0.0001009809,0.0002089436,0.0001738566,0.005151333],"genre_scores_gemma":[0.9959338,0.0006329746,0.001879761,0.0002553332,0.0001538536,0.0000603187,0.0002753306,0.00003076444,0.0007778328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00182633,"threshold_uncertainty_score":0.0057832,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046598182","doi":"10.1002/gcc.20383","title":"Profiling genomic copy number changes in retinoblastoma beyond loss of <i>RB1</i>","year":2006,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University of British Columbia; University Health Network","funders":"National Cancer Institute; University of Toronto","keywords":"Biology; Oncogene; Retinoblastoma; Tumor progression; Cancer research; Primary tumor; Comparative genomic hybridization; Multiplex ligation-dependent probe amplification; Metastasis; Molecular biology; Gene; Cancer; Genetics; Cell cycle; Chromosome","authors":[{"name":"Ella Bowles","is_ca":true},{"name":"Timothy W. Corson","is_ca":true},{"name":"Jane Bayani","is_ca":true},{"name":"Jeremy A. Squire","is_ca":true},{"name":"Nathalie Wong","is_ca":false},{"name":"Paul B.S. Lai","is_ca":false},{"name":"Brenda L. Gallie","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008308360786221103,"gpt":0.2708971613269926,"spread":0.2625888005407715,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009984736,0.0001556757,0.0001865832,0.0004112549,0.0001002991,0.0002812985,0.0001294591,0.0001472285,0.001086339],"category_scores_gemma":[0.0003395947,0.0001285663,0.0001373882,0.0002770995,0.0001485786,0.00009476359,0.0001186826,0.0002027446,0.000290118],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002261151,"about_ca_system_score_gemma":0.0001000037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001025267,"about_ca_topic_score_gemma":0.001555281,"domain_scores_codex":[0.9998729,0.00001263154,0.000006285521,0.00004345609,0.00004000301,0.00002463064],"domain_scores_gemma":[0.9998247,0.00005266635,0.00005713701,0.0000196472,0.0000252937,0.0000206386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001291425,0.00001230233,0.02189773,0.00002531164,0.00001234271,0.00009451555,0.00005637762,0.0002108025,0.9729557,0.00003004817,0.00003858879,0.004537281],"study_design_scores_gemma":[0.000009303591,0.0002960737,0.3033796,0.000006867977,0.00005902489,0.001737972,0.0000879522,0.002277608,0.6903028,0.0001132275,0.001719265,0.0000102956],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997735,0.0002296157,0.001274077,0.0000172232,0.000001617429,0.000007301738,0.0003328124,0.00005591306,0.0003462953],"genre_scores_gemma":[0.9966806,0.0002093117,0.001577591,0.00001551457,0.000002454471,0.00001579525,0.0006218423,0.00001323404,0.0008635822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001086339,"threshold_uncertainty_score":0.003634095,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2143860386","doi":"10.1002/gcc.20008","title":"Amplification of the <i>TOP2A</i> gene does not predict high levels of topoisomerase II alpha protein in human breast tumor samples","year":2004,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Cancer therapeutics and mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Anthracycline; Immunohistochemistry; Breast cancer; Gene duplication; Topoisomerase; Cancer research; Biology; Gene expression; Fluorescence in situ hybridization; Gene; Molecular biology; Cancer; DNA; Genetics; Immunology","authors":[{"name":"Rosemary Mueller","is_ca":true},{"name":"Robert Parkes","is_ca":true},{"name":"Irene L. Andrulis","is_ca":true},{"name":"Frances P. O’Malley","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01307273437721228,"gpt":0.245853389504476,"spread":0.2327806551272637,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001916293,0.0002181451,0.0002007203,0.0004133261,0.0001344796,0.0003700948,0.00006652669,0.0001884816,0.001581414],"category_scores_gemma":[0.0008238857,0.0001698635,0.00007342584,0.0002106363,0.0002671849,0.0001328347,0.000105347,0.0001745655,0.0003561163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001443894,"about_ca_system_score_gemma":0.0001022464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007580839,"about_ca_topic_score_gemma":0.0009702283,"domain_scores_codex":[0.9998146,0.00004195459,0.0000181473,0.00005115852,0.00004505004,0.00002922384],"domain_scores_gemma":[0.9994592,0.0002295637,0.0001582529,0.00005300434,0.00005055235,0.00004949573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00107254,0.00005531696,0.3250715,0.00007934299,0.00007979244,0.0007274624,0.00008753853,0.0005119472,0.6648642,0.00008601093,0.0001592834,0.007205155],"study_design_scores_gemma":[0.00002912366,0.0004734705,0.8140855,0.000009255758,0.00009558637,0.006855176,0.000151519,0.001764813,0.1748559,0.0001522428,0.001520158,0.000007121211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982879,0.0003264646,0.0006088412,0.00002026547,0.000002407961,0.000005680409,0.00009050967,0.00001221814,0.0006456857],"genre_scores_gemma":[0.9988278,0.0002044524,0.0003834878,0.00001049084,0.000003476453,0.000004662837,0.0002687082,0.000003409882,0.0002936224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001581414,"threshold_uncertainty_score":0.005290329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3032930802","doi":"10.1002/gcc.22877","title":"Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis‐like neural tumor pattern","year":2020,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Soft tissue tumor case studies","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"Center for Scientific Review; National Cancer Institute; Cycle for Survival; National Institutes of Health; Memorial Sloan-Kettering Cancer Center","keywords":"Biology; Kinase; Cancer research; Computational biology; Cell biology","authors":[{"name":"Yu‐Chien Kao","is_ca":false},{"name":"Albert J.H. Suurmeijer","is_ca":false},{"name":"Pedram Argani","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Narasimhan P. Agaram","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01680067465675165,"gpt":0.2590631036266143,"spread":0.2422624289698626,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002017728,0.0002138056,0.0002786833,0.001201921,0.0003114684,0.0003411039,0.0001656224,0.0001733875,0.001399975],"category_scores_gemma":[0.0007975986,0.0001189173,0.0001903569,0.0007391101,0.0004501467,0.0002749717,0.0003572559,0.0001372724,0.0003933432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001435797,"about_ca_system_score_gemma":0.0001671772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008133356,"about_ca_topic_score_gemma":0.001216279,"domain_scores_codex":[0.9997619,0.00002477091,0.00003427268,0.00004823396,0.00006986507,0.00006090149],"domain_scores_gemma":[0.9994572,0.0001156069,0.0002213874,0.00006231223,0.00005849445,0.00008498103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002202892,0.00003493994,0.8940593,0.00004862329,0.00005400067,0.02386088,0.0004123928,0.0001877154,0.06543393,0.0001829668,0.0001433136,0.01536163],"study_design_scores_gemma":[0.000008679768,0.0001233936,0.8355317,0.00001039465,0.00004524758,0.1536627,0.0004209306,0.0003816438,0.008908963,0.0001657979,0.0007294273,0.00001109131],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988731,0.000199715,0.000325456,0.00000526437,0.000001117852,0.0000061809,0.00007286142,0.00001120309,0.0005051853],"genre_scores_gemma":[0.9995065,0.0001274608,0.000146078,0.000004813725,0.000002411553,0.000003656198,0.0001036222,0.000002774852,0.0001026869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001399975,"threshold_uncertainty_score":0.004683375,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2884064542","doi":"10.1002/gcc.22663","title":"Dermatofibrosarcoma protuberans with a novel <i>COL6A3‐PDGFD</i> fusion gene and apparent predilection for breast","year":2018,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"National Cancer Institute; Cycle for Survival","keywords":"Dermatofibrosarcoma protuberans; PDGFB; Fusion gene; Dermatofibrosarcoma; CD34; Pathology; Fluorescence in situ hybridization; Immunophenotyping; Biology; Medicine; Gene; Internal medicine; Chromosome; Molecular biology; Flow cytometry; Receptor; Platelet-derived growth factor receptor; Growth factor","authors":[{"name":"Brendan C. Dickson","is_ca":true},{"name":"Jason L. Hornick","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Elizabeth G. Demicco","is_ca":true},{"name":"David Howarth","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01470961068986495,"gpt":0.2646385384110983,"spread":0.2499289277212333,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001554186,0.0004431692,0.0002837059,0.0007144994,0.0004936838,0.0002870732,0.0001858731,0.0004419981,0.001405715],"category_scores_gemma":[0.0006395994,0.000283068,0.0001998739,0.0005051801,0.0004436164,0.000167446,0.0002695727,0.0003130522,0.0004314159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002436739,"about_ca_system_score_gemma":0.000212648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001217541,"about_ca_topic_score_gemma":0.002135462,"domain_scores_codex":[0.9998071,0.0000185215,0.00002020863,0.00005534712,0.00003934434,0.00005945993],"domain_scores_gemma":[0.9995536,0.00009992961,0.000164538,0.00003784171,0.00002889159,0.0001151479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.0004343495,0.0001392265,0.3470729,0.00009937208,0.00005259182,0.5190858,0.000715262,0.0002881054,0.1229083,0.0003079741,0.0004201027,0.008476002],"study_design_scores_gemma":[0.00002062978,0.0001730385,0.200984,0.000008434531,0.00003258999,0.790607,0.0001640056,0.0003495507,0.006623813,0.00009011456,0.000936054,0.000010671],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983495,0.0001545653,0.0003524164,0.00003159418,0.000004720762,0.00001232697,0.00005635114,0.00001924226,0.001019273],"genre_scores_gemma":[0.9994587,0.00005552155,0.0002235315,0.00001523628,0.000008016126,0.00000408813,0.00003738813,0.000002900578,0.0001945876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001405715,"threshold_uncertainty_score":0.004702568,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3003702392","doi":"10.1002/gcc.22835","title":"A morphologic and molecular reappraisal of myoepithelial tumors of soft tissue, bone, and viscera with EWSR1 and FUS gene rearrangements","year":2020,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Salivary Gland Tumors Diagnosis and Treatment","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute; Memorial Sloan-Kettering Cancer Center","keywords":"Biology; Myoepithelial cell; Soft tissue; Anatomy; Gene; Pathology; Immunohistochemistry; Genetics; Immunology","authors":[{"name":"Albert J.H. Suurmeijer","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Lei Zhang","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01474759013913215,"gpt":0.2664222944623014,"spread":0.2516747043231692,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005011514,0.0003402095,0.0002273187,0.001758909,0.0003415561,0.0003721254,0.0002357006,0.0002460773,0.0009331995],"category_scores_gemma":[0.001051045,0.0002207012,0.0002042094,0.0005856622,0.0003904397,0.0004697928,0.0006436494,0.0001835868,0.0002619372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001351499,"about_ca_system_score_gemma":0.0001578597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004067731,"about_ca_topic_score_gemma":0.0008298284,"domain_scores_codex":[0.9997577,0.00004907657,0.00003965339,0.00004993625,0.0000493008,0.00005427175],"domain_scores_gemma":[0.999701,0.00009662718,0.00006873196,0.00004493217,0.00004226078,0.00004639323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002377022,0.00003146576,0.9363658,0.00004551542,0.00003025986,0.01490021,0.0002574636,0.0001969792,0.02966072,0.0001514213,0.00009991772,0.01802248],"study_design_scores_gemma":[0.0000133383,0.0002218729,0.8875211,0.00002414254,0.00007661503,0.1034288,0.0009886146,0.000791158,0.004873165,0.0002717884,0.001777144,0.00001226278],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981222,0.0006966264,0.0005544022,0.00002509765,0.000003416715,0.0000109148,0.00005079467,0.000007188952,0.0005294034],"genre_scores_gemma":[0.9989171,0.0003900801,0.0004681539,0.00001207666,0.00001132591,0.000007909936,0.00007910392,0.000002487301,0.0001117303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001758909,"threshold_uncertainty_score":0.003121853,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103077528","doi":"10.1002/gcc.20368","title":"Genomic alterations in lobular neoplasia: A microarray comparative genomic hybridization signature for early neoplastic proliferationin the breast","year":2006,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"London Health Sciences Centre; University of British Columbia; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Western University","funders":"National Cancer Institute; State Key Laboratory of Synthetical Automation for Process Industries; Hospital for Sick Children","keywords":"Lobular carcinoma; Comparative genomic hybridization; Breast cancer; Biology; Pathology; Tissue microarray; Invasive lobular carcinoma; Copy number analysis; Ductal carcinoma; Cancer; Copy-number variation; Genetics; Genome; Medicine; Gene; Invasive ductal carcinoma","authors":[{"name":"Teresa L. Mastracci","is_ca":true},{"name":"Ashleen Shadeo","is_ca":true},{"name":"Sarah Colby","is_ca":true},{"name":"Alan B. Tuck","is_ca":true},{"name":"Frances P. O’Malley","is_ca":true},{"name":"Shelley B. Bull","is_ca":true},{"name":"Wan L. Lam","is_ca":true},{"name":"Irene L. Andrulis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006819319162356687,"gpt":0.2222007873506839,"spread":0.2153814681883272,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001700213,0.0001777916,0.0002029297,0.0006752901,0.0001644548,0.0002351802,0.0001281679,0.0002333533,0.001854784],"category_scores_gemma":[0.0003045666,0.0001140719,0.0001179222,0.0004180247,0.000183325,0.0001254602,0.0001457505,0.0002209552,0.000298268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001944856,"about_ca_system_score_gemma":0.0001434184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004541548,"about_ca_topic_score_gemma":0.001123566,"domain_scores_codex":[0.9998608,0.00002398992,0.000008094072,0.00004033273,0.00003986173,0.00002694668],"domain_scores_gemma":[0.9998505,0.00005060051,0.0000370529,0.00002079542,0.00002104199,0.0000198941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007446262,0.00001205639,0.005209544,0.00002870737,0.000008197354,0.00008986353,0.00002209085,0.00007108485,0.9919525,0.00003350843,0.00004506034,0.002452971],"study_design_scores_gemma":[0.00001351575,0.0003697616,0.6277971,0.00001078079,0.00007318623,0.002854176,0.0001606657,0.002724014,0.3624331,0.0002268139,0.003320403,0.00001653402],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901619,0.001056944,0.005681852,0.00009225151,0.00001423696,0.0000427605,0.001173242,0.0001394085,0.001637447],"genre_scores_gemma":[0.989405,0.0005348697,0.007532768,0.00008235045,0.00001233488,0.00008203658,0.001220509,0.0000176881,0.001112364],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001854784,"threshold_uncertainty_score":0.006204844,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134566806","doi":"10.1002/gcc.20011","title":"Role of inherited defects of <i>MYH</i> in the development of sporadic colorectal cancer","year":2004,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Cancer Institute","keywords":"MUTYH; Loss of heterozygosity; Germline; Colorectal cancer; Microsatellite instability; Biology; Genetics; Germline mutation; Locus (genetics); Cancer research; Allele; Cancer; Gene; Mutation; Microsatellite","authors":[{"name":"Takeshi Kambara","is_ca":false},{"name":"Vicki Whitehall","is_ca":false},{"name":"Kevin J. Spring","is_ca":false},{"name":"Melissa Barker","is_ca":false},{"name":"Sven Arnold","is_ca":false},{"name":"Coral Wynter","is_ca":false},{"name":"Nagahide Matsubara","is_ca":false},{"name":"Noriaki Tanaka","is_ca":false},{"name":"Joanne Young","is_ca":false},{"name":"Barbara Leggett","is_ca":true},{"name":"Jeremy R. Jass","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01428906300635276,"gpt":0.2677439555831398,"spread":0.253454892576787,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004511717,0.0003358375,0.0002496547,0.0007603927,0.0001950849,0.0003094719,0.0002714415,0.0003403515,0.00097476],"category_scores_gemma":[0.001762795,0.0002062867,0.0001593124,0.0003378871,0.0003807175,0.000157179,0.0002392449,0.0002193393,0.0001327991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001746883,"about_ca_system_score_gemma":0.0001870322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001077049,"about_ca_topic_score_gemma":0.0009623194,"domain_scores_codex":[0.9996021,0.0001328883,0.00004065367,0.00008687758,0.00007584697,0.0000615538],"domain_scores_gemma":[0.9983039,0.0003913054,0.0008166109,0.0001111692,0.00008526119,0.0002917959],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001509264,0.00005821891,0.9622085,0.00003289898,0.0001100923,0.00270414,0.00008657303,0.00009484151,0.02572783,0.0001330868,0.0001058806,0.007228624],"study_design_scores_gemma":[0.00002424188,0.0002416717,0.989983,0.00001078698,0.00005547498,0.007432661,0.00005622684,0.0002528779,0.001697699,0.00006687624,0.0001736217,0.000004953469],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987596,0.0008092502,0.00008167449,0.00002706808,0.000002810613,0.000001669495,0.00003166838,0.000006828048,0.0002792896],"genre_scores_gemma":[0.999764,0.0001115582,0.00005076462,0.000007295371,0.000006990451,6.378029e-7,0.00002003459,0.000001589346,0.00003701798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001077049,"threshold_uncertainty_score":0.00326097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2604862741","doi":"10.1002/gcc.22460","title":"Genome‐wide copy number variation pattern analysis and a classification signature for non‐small cell lung cancer","year":2017,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; BC Cancer Agency; National Natural Science Foundation of China","keywords":"Copy-number variation; Adenocarcinoma; Lung cancer; Lung; Carcinoma; Biology; Oncology; Pathology; Medicine; Cancer; Genome; Gene; Internal medicine; Genetics","authors":[{"name":"Zhe‐Wei Qiu","is_ca":false},{"name":"J Faheemunnisa bi","is_ca":false},{"name":"Adi F. Gazdar","is_ca":false},{"name":"Kai Song","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009598216775049124,"gpt":0.2553226428092248,"spread":0.2457244260341757,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007546117,0.0002574015,0.0004756507,0.001372829,0.0002031488,0.0005591963,0.0003001224,0.0003768372,0.0004728623],"category_scores_gemma":[0.002113093,0.0001096897,0.000385317,0.0007144405,0.0002011585,0.0003336864,0.0003019336,0.0003217904,0.0001570728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004210538,"about_ca_system_score_gemma":0.0003624833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002007047,"about_ca_topic_score_gemma":0.003076883,"domain_scores_codex":[0.9996481,0.00007417156,0.00004047487,0.0001006877,0.00009630514,0.00004022383],"domain_scores_gemma":[0.9991474,0.0004298014,0.0001806029,0.0000603149,0.0001138235,0.00006806538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007451151,0.0001662182,0.8099654,0.0001064097,0.0002117949,0.0003631053,0.00007337734,0.004659317,0.09696727,0.0002251256,0.0007112532,0.08580564],"study_design_scores_gemma":[0.00004971992,0.0004460047,0.8400843,0.00002411099,0.0002130652,0.001485514,0.0001340851,0.1291583,0.02608819,0.0009256162,0.001352378,0.00003875593],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933177,0.000608598,0.00502745,0.0001206354,0.0000122267,0.00003563867,0.0004445593,0.00007464507,0.0003585117],"genre_scores_gemma":[0.9932146,0.0001218951,0.005596267,0.00003211124,0.000009410826,0.00002250193,0.0008159089,0.000005791548,0.0001814695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002007047,"threshold_uncertainty_score":0.003990829,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2606448919","doi":"10.1002/gcc.22464","title":"<i>ETV6/RUNX1</i>‐like acute lymphoblastic leukemia: A novel B‐cell precursor leukemia subtype associated with the CD27/CD44 immunophenotype","year":2017,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's & Women's Health Centre of British Columbia","funders":"Ministerstvo Zdravotnictví Ceské Republiky; Fondazione Cariplo; Univerzita Karlova v Praze","keywords":"Immunophenotyping; ETV6; Biology; Fusion gene; Breakpoint; Chromosomal translocation; Genetics; Cancer research; Molecular biology; Gene; Flow cytometry","authors":[{"name":"Markéta Žaliová","is_ca":false},{"name":"Michaela Kotrová","is_ca":false},{"name":"Silvia Bresolin","is_ca":true},{"name":"Jan Stuchlý","is_ca":false},{"name":"Jan Starý","is_ca":false},{"name":"Ondřej Hrušák","is_ca":false},{"name":"Geertruy te Kronnie","is_ca":true},{"name":"Jan Trka","is_ca":false},{"name":"Jan Zuna","is_ca":false},{"name":"Martina Vašková","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01506352876569577,"gpt":0.2648415233672558,"spread":0.24977799460156,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007797647,0.0001436986,0.0001548301,0.000426855,0.000205913,0.0003769872,0.0002041068,0.0001887393,0.0008265309],"category_scores_gemma":[0.0001655546,0.0001060771,0.0001309344,0.000431961,0.0002130998,0.00009287719,0.0001941796,0.0002146391,0.0002604483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001502353,"about_ca_system_score_gemma":0.00008308391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004851882,"about_ca_topic_score_gemma":0.0008349805,"domain_scores_codex":[0.9999112,0.000009883441,0.000008984175,0.00002679669,0.00002163697,0.00002154378],"domain_scores_gemma":[0.9999045,0.00001165473,0.00003439585,0.00001570611,0.00001103471,0.00002259192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007261109,0.00007177966,0.4027806,0.00007933964,0.00005962115,0.01318861,0.0003004338,0.0004851228,0.5661526,0.0006283139,0.0005032361,0.01502419],"study_design_scores_gemma":[0.00005927218,0.0001972753,0.782487,0.00001673503,0.0000785321,0.1031172,0.0003971646,0.003365716,0.1025976,0.001192137,0.006473426,0.00001792788],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985139,0.00006431327,0.000656953,0.00001548359,0.000001358463,0.000008158445,0.0001696211,0.00002039404,0.0005499593],"genre_scores_gemma":[0.9986007,0.00004257149,0.0006014107,0.00001145675,0.000004599264,0.000004438366,0.0004965366,0.00000948687,0.0002287714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008265309,"threshold_uncertainty_score":0.002765059,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990047266","doi":"10.1002/gcc.20538","title":"Hydrocortisone down‐regulates the tumor suppressor gene <i>BRCA1</i> in mammary cells: A possible molecular link between stress and breast cancer","year":2008,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Stress Responses and Cortisol","field":"Neuroscience","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Hydrocortisone; Carcinogenesis; Hormone; Breast cancer; Biology; Endocrinology; Cancer research; Internal medicine; Estrogen; Transcription factor; Mammary tumor; Downregulation and upregulation; Gene expression; Cell culture; Cancer; Gene; Medicine; Genetics","authors":[{"name":"Lilia Antonova","is_ca":true},{"name":"Christopher R. Mueller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01493153346290854,"gpt":0.2443816826956031,"spread":0.2294501492326945,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009160112,0.0003690594,0.0002446229,0.0001944418,0.0001442628,0.0002405998,0.0001722359,0.0002162859,0.001494516],"category_scores_gemma":[0.0001126947,0.0001299153,0.0002561407,0.0001374427,0.000290053,0.0001413363,0.0001439654,0.0004098346,0.0003668848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000315436,"about_ca_system_score_gemma":0.0002172642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001061399,"about_ca_topic_score_gemma":0.001800531,"domain_scores_codex":[0.9999076,0.00001073214,0.000007086669,0.00002100238,0.00002582866,0.00002774197],"domain_scores_gemma":[0.9998647,0.00002498153,0.00003851896,0.00001775454,0.00001471277,0.00003940782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004811673,0.000006744679,0.0001613907,0.00002616283,0.000001668713,0.00003229271,0.000007002248,0.000009161178,0.999198,0.00001609776,0.0000182798,0.0004750609],"study_design_scores_gemma":[0.00001200363,0.0001445149,0.02259159,0.000007574841,0.00001314656,0.0002001267,0.00003554374,0.0001609673,0.9753864,0.00004842009,0.001395503,0.000004166598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877346,0.007227354,0.001825711,0.0004420142,0.00008705062,0.00002651625,0.001147811,0.0001941715,0.001314862],"genre_scores_gemma":[0.9936871,0.002228981,0.0009161194,0.0001981036,0.00002307153,0.00002565958,0.0006019832,0.00002936927,0.002289588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001494516,"threshold_uncertainty_score":0.004999697,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2590549347","doi":"10.1002/gcc.22454","title":"ETV transcriptional upregulation is more reliable than RNA sequencing algorithms and FISH in diagnosing round cell sarcomas with <i>CIC</i> gene rearrangements","year":2017,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute; Computing Research Association","keywords":"Biology; Fish <Actinopterygii>; Gene; Downregulation and upregulation; RNA; Genetics; Computational biology; Molecular biology; Fishery","authors":[{"name":"Yu‐Chien Kao","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Chun‐Liang Chen","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Sumathi Vaiyapuri","is_ca":false},{"name":"Farida Latif","is_ca":false},{"name":"Abdullah Alholle","is_ca":false},{"name":"Shih‐Chiang Huang","is_ca":false},{"name":"Jason L. Hornick","is_ca":false},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03031439641967003,"gpt":0.2839186575503226,"spread":0.2536042611306525,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003915175,0.0006355406,0.0004791926,0.002919795,0.0002675058,0.001130982,0.0004445922,0.0008155509,0.00186598],"category_scores_gemma":[0.005493407,0.000348087,0.0004248255,0.001046457,0.0005439363,0.0008173333,0.0006322577,0.000331804,0.0007900395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003721318,"about_ca_system_score_gemma":0.0002217252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009532596,"about_ca_topic_score_gemma":0.00230123,"domain_scores_codex":[0.9965114,0.0009969614,0.000454439,0.001167589,0.000660452,0.0002091597],"domain_scores_gemma":[0.9958026,0.002046149,0.0008694481,0.0004060327,0.0007644623,0.0001113586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001014229,0.00007220526,0.5156294,0.0004858541,0.0002899053,0.0006766255,0.0004055649,0.003346093,0.3959512,0.0003787859,0.0005975067,0.08115257],"study_design_scores_gemma":[0.0000449619,0.0004118608,0.738596,0.0001500565,0.0004118854,0.003746515,0.0007201949,0.03717657,0.2096449,0.001319069,0.007677861,0.0001001378],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9351336,0.002438818,0.0537458,0.0001906632,0.00005476294,0.0001720318,0.00102253,0.0008297344,0.006412008],"genre_scores_gemma":[0.9596875,0.0005073242,0.03603726,0.000114165,0.00003158465,0.0001606818,0.001284058,0.0001118379,0.00206552],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003915175,"threshold_uncertainty_score":0.0207057,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165492993","doi":"10.1002/gcc.10294","title":"Novel regions of amplification on 8q distinct from the MYC locus and frequently altered in oral dysplasia and cancer","year":2003,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"OPLS; Locus (genetics); Comparative genomic hybridization; Loss of heterozygosity; Biology; Chromosome; Molecular biology; Bacterial artificial chromosome; Gene duplication; Genetics; Gene; Genome; Chemistry; Allele","authors":[{"name":"Cathie Garnis","is_ca":true},{"name":"Bradley P. Coe","is_ca":true},{"name":"Adrian Ishkanian","is_ca":false},{"name":"Lewei Zhang","is_ca":true},{"name":"Miriam P. Rosin","is_ca":true},{"name":"Wan L. Lam","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01857991897766769,"gpt":0.2519550878704169,"spread":0.2333751688927492,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001226235,0.0002855239,0.000233113,0.001143683,0.0002020319,0.0002700674,0.0002271371,0.0003567203,0.0008462157],"category_scores_gemma":[0.0004019157,0.0001897625,0.0001595714,0.000585196,0.0002307477,0.0001226477,0.0002893569,0.0001730047,0.0002315407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001968702,"about_ca_system_score_gemma":0.000126043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005441199,"about_ca_topic_score_gemma":0.001071458,"domain_scores_codex":[0.9998305,0.00001871648,0.00001539847,0.00004705003,0.00004760986,0.00004078677],"domain_scores_gemma":[0.9997852,0.00003985899,0.0001024592,0.00001498506,0.00002390736,0.00003344737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003408067,0.0000421456,0.0727727,0.00008705888,0.00004226002,0.007819843,0.0002180406,0.0001955122,0.9082666,0.0001470396,0.00007035373,0.009997623],"study_design_scores_gemma":[0.0000434922,0.0003615407,0.8739005,0.00002860449,0.00009957438,0.05105644,0.0002955449,0.0007379763,0.06870723,0.0004602043,0.004285092,0.0000238291],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998848,0.0004092724,0.0003773966,0.00001515205,0.000001986016,0.000004972273,0.00004922109,0.00001270085,0.0002811988],"genre_scores_gemma":[0.9985899,0.0001873251,0.0007691351,0.00001853882,0.000005599447,0.00001101547,0.0001295541,0.000002845555,0.0002860111],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001143683,"threshold_uncertainty_score":0.002830863,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071011415","doi":"10.1002/gcc.10044","title":"Rare recurring balanced chromosome abnormalities in therapy‐related myelodysplastic syndromes and acute leukemia: Report from an International Workshop†","year":2002,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Medicine; Internal medicine; Gastroenterology; Radiation therapy; Myelodysplastic syndromes; Lymphoma; Acute leukemia; Leukemia; Oncology; Bone marrow","authors":[{"name":"AnneMarie W. Block","is_ca":false},{"name":"Andrew J. Carroll","is_ca":false},{"name":"Anne Hagemeijer","is_ca":false},{"name":"Lucienne Michaux","is_ca":false},{"name":"Kirsten van Lom","is_ca":false},{"name":"Harold J. Olney","is_ca":true},{"name":"Maria R. Baer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02718265016655138,"gpt":0.303662015098215,"spread":0.2764793649316636,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001823502,0.0005478808,0.00023707,0.001290709,0.0007603198,0.001114239,0.0005662391,0.0009168503,0.001870206],"category_scores_gemma":[0.001068638,0.0002326751,0.0003073461,0.0007542277,0.0003438939,0.0003300335,0.000815921,0.0003683878,0.0006087701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002688878,"about_ca_system_score_gemma":0.0006943406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00180489,"about_ca_topic_score_gemma":0.002051134,"domain_scores_codex":[0.9990543,0.0001840862,0.0001356007,0.000126042,0.0002121207,0.0002879132],"domain_scores_gemma":[0.9990399,0.0001848141,0.0001380421,0.00006542011,0.0002782239,0.0002935574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005518763,0.0005153365,0.7024644,0.0004648329,0.0001199149,0.04106247,0.008461248,0.0002886271,0.04696622,0.0004364009,0.01847654,0.1801921],"study_design_scores_gemma":[0.000217863,0.001382933,0.7234905,0.0003596946,0.0003101832,0.1065764,0.007474227,0.0007936267,0.01503666,0.0002731786,0.1440068,0.0000778199],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850315,0.004825837,0.001228884,0.001418899,0.0002102553,0.0001310453,0.0002379162,0.00005971828,0.006855974],"genre_scores_gemma":[0.9841118,0.006189215,0.001381416,0.001008963,0.0005306634,0.00007724904,0.001199767,0.00002997926,0.005471005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001870206,"threshold_uncertainty_score":0.009643734,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089464420","doi":"10.1002/gcc.20292","title":"Array CGH analysis of pediatric medulloblastomas","year":2005,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Cancer Institute","keywords":"Breakpoint; Comparative genomic hybridization; Chromosome; Biology; Genetics; High resolution; Computational biology; Gene","authors":[{"name":"Michael R. Rossi","is_ca":false},{"name":"Jeffrey M. Conroy","is_ca":false},{"name":"Devin McQuaid","is_ca":false},{"name":"Norma J. Nowak","is_ca":false},{"name":"James T. Rutka","is_ca":true},{"name":"John K. Cowell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007633984282154997,"gpt":0.238242927606698,"spread":0.230608943324543,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001392035,0.0002335223,0.0002079176,0.001320795,0.0002239323,0.000201432,0.0001491532,0.0001430733,0.0009645945],"category_scores_gemma":[0.0003846393,0.0001065365,0.0001500221,0.0008554208,0.0001256419,0.00007712191,0.0001078513,0.0001995869,0.0002279683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002659132,"about_ca_system_score_gemma":0.0001723216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00148529,"about_ca_topic_score_gemma":0.002212207,"domain_scores_codex":[0.9998052,0.00002412133,0.0000125997,0.00005896515,0.00007742961,0.00002171715],"domain_scores_gemma":[0.9998908,0.00003465655,0.00002634777,0.00001323227,0.00001968026,0.00001523011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003775063,0.00002891045,0.04650286,0.0001052883,0.00006779849,0.0007848272,0.000126954,0.0006456007,0.912407,0.0002183979,0.0004851858,0.03824972],"study_design_scores_gemma":[0.00005067217,0.0004176159,0.5821829,0.00002464483,0.0001925351,0.006231274,0.0001830829,0.00327106,0.3850625,0.0005050382,0.021862,0.00001670707],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9727691,0.00258721,0.01598842,0.0001314433,0.00003087403,0.00008080766,0.005263257,0.0003547659,0.002794254],"genre_scores_gemma":[0.9712494,0.001838861,0.02009115,0.0000706194,0.00002471925,0.0001188108,0.005055725,0.0000644203,0.001486259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00148529,"threshold_uncertainty_score":0.003226876,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074106198","doi":"10.1002/1098-2264(2000)9999:9999<::aid-gcc1039>3.0.co;2-9","title":"t(7;12)(q36;p13), a new recurrent translocation involvingETV6 in infant leukemia","year":2000,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"Cancer Research Institute","keywords":"Chromosomal translocation; Biology; Genetics; Gene","authors":[{"name":"Sabrina Tosi","is_ca":false},{"name":"Jochen Harbott","is_ca":false},{"name":"Andrea Teigler‐Schlegel","is_ca":false},{"name":"Oskar A. Haas","is_ca":false},{"name":"Hendrati Pirc‐Danoewinata","is_ca":false},{"name":"Christine J. Harrison","is_ca":false},{"name":"Andrea Biondi","is_ca":false},{"name":"Giovanni Cazzaniga","is_ca":false},{"name":"Helena Kempski","is_ca":false},{"name":"Stephen W. Scherer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03455938666331476,"gpt":0.3163550856253081,"spread":0.2817956989619933,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002071431,0.0004702628,0.0003644347,0.000931186,0.0004476336,0.0004697136,0.000342638,0.00107253,0.0009991622],"category_scores_gemma":[0.0009161466,0.0003010156,0.0003309926,0.0006626233,0.0005430562,0.0002865865,0.0004812319,0.00047764,0.0003330663],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003737466,"about_ca_system_score_gemma":0.0002345282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006993209,"about_ca_topic_score_gemma":0.001179599,"domain_scores_codex":[0.9996724,0.0000457196,0.00004190152,0.00006664068,0.00007709369,0.00009619009],"domain_scores_gemma":[0.9996325,0.00006708353,0.0001350283,0.00003349403,0.00002633641,0.0001055866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007142267,0.00009003672,0.1031535,0.0002557243,0.00006670223,0.7607217,0.0006641231,0.0009927573,0.08500652,0.001340596,0.001180328,0.04581362],"study_design_scores_gemma":[0.00005968623,0.0002904159,0.06039273,0.00001964993,0.00006370622,0.9236518,0.00009986902,0.000888204,0.009912615,0.0005674409,0.004033792,0.00002016189],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.995669,0.001159801,0.001561788,0.0001475577,0.00002656341,0.00003730184,0.0001013742,0.00007650872,0.001220191],"genre_scores_gemma":[0.997339,0.0005530817,0.001039554,0.00004739657,0.00003802422,0.0000131733,0.0001681993,0.00001450421,0.0007871847],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.00107253,"threshold_uncertainty_score":0.003342509,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4380576977","doi":"10.1002/gcc.23177","title":"Machine learning in computational histopathology: Challenges and opportunities","year":2023,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"AI in cancer detection","field":"Computer Science","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Vector Institute; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Canadian Institute for Advanced Research","keywords":"Workflow; Digital pathology; Histopathology; Artificial intelligence; Computer science; Machine learning; Context (archaeology); Digitization; Medical physics; Pathology; Computer vision; Medicine; Biology","authors":[{"name":"Michael Cooper","is_ca":true},{"name":"Zongliang Ji","is_ca":true},{"name":"Rahul G. Krishnan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1557736330130398,"gpt":0.335010630612856,"spread":0.1792369975998162,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002986362,0.0007901147,0.001362072,0.002136845,0.0004341448,0.002555467,0.001577429,0.002470279,0.002820002],"category_scores_gemma":[0.004640949,0.0005203814,0.0005244736,0.003269736,0.002164174,0.004640311,0.001375432,0.004623841,0.002206728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001199877,"about_ca_system_score_gemma":0.002122367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001701621,"about_ca_topic_score_gemma":0.00207544,"domain_scores_codex":[0.9993681,0.0002611452,0.0000487968,0.00008070029,0.0001945761,0.00004663373],"domain_scores_gemma":[0.9947399,0.003991746,0.0001476861,0.0001591058,0.0007884969,0.0001731269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004125227,0.00008897253,0.0004285728,0.006498995,0.00008579127,0.0001196194,0.0001671377,0.002572414,0.0003763275,0.07672791,0.04874931,0.8641437],"study_design_scores_gemma":[0.00001739809,0.00009901291,0.0007643136,0.006055483,0.00004582545,0.0004457774,0.0002278608,0.003314805,0.0003846859,0.1230372,0.8655537,0.00005407788],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002130985,0.9872857,0.003719378,0.005938907,0.0005275613,0.000007346681,0.00001763302,0.00002772262,0.00226275],"genre_scores_gemma":[0.00232572,0.9914682,0.003014502,0.001161475,0.001283398,0.00001556806,0.00003179899,0.0000124496,0.0006868707],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002986362,"threshold_uncertainty_score":0.01579356,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2934782271","doi":"10.1002/gcc.22755","title":"Novel recurrent <i>PHF1‐TFE3</i> fusions in ossifying fibromyxoid tumors","year":2019,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute; Korea National Institute of Health; Cycle for Survival","keywords":"TFE3; Biology; Exon; Pathology; Fusion gene; Chromosomal translocation; Cancer research; Medicine; Gene; Gene expression; Genetics","authors":[{"name":"Albert J.H. Suurmeijer","is_ca":false},{"name":"Wangzhao Song","is_ca":false},{"name":"Yun‐Shao Sung","is_ca":false},{"name":"Lei Zhang","is_ca":false},{"name":"David Swanson","is_ca":true},{"name":"Christopher D.�M. Fletcher","is_ca":false},{"name":"Brendan C. Dickson","is_ca":true},{"name":"Cristina R. Antonescu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02326214566526624,"gpt":0.2879335495770484,"spread":0.2646714039117822,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001737017,0.000302879,0.0002253951,0.0004863889,0.0003648308,0.00042611,0.0002027628,0.0005402716,0.00110867],"category_scores_gemma":[0.0007411735,0.0001362092,0.0002622061,0.0003550146,0.0004393893,0.0002136055,0.0003465216,0.0002380003,0.0002740104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003737207,"about_ca_system_score_gemma":0.0001285409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007145192,"about_ca_topic_score_gemma":0.001034749,"domain_scores_codex":[0.9998073,0.00001302568,0.00002086588,0.00004296567,0.00005095744,0.0000648706],"domain_scores_gemma":[0.999537,0.000104164,0.0001984539,0.00003248737,0.00002609637,0.0001018058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004196256,0.0000700602,0.3504229,0.0001648021,0.00009944599,0.4404523,0.001533828,0.0009298059,0.1785361,0.0006248138,0.001110971,0.02563519],"study_design_scores_gemma":[0.00002404806,0.0002127049,0.1843994,0.00001280131,0.00005616738,0.7910635,0.0002664581,0.0008643236,0.01901231,0.00030446,0.003766712,0.00001719031],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983476,0.0002786185,0.0006062671,0.00004018641,0.000005274302,0.000007945697,0.00006587795,0.00002868191,0.0006195077],"genre_scores_gemma":[0.9995033,0.00005633943,0.0001885105,0.00001753716,0.00001211774,0.000002967375,0.00005284087,0.000005200178,0.0001610378],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00110867,"threshold_uncertainty_score":0.003708899,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2888711287","doi":"10.1002/gcc.22649","title":"Novel <i>EPC1</i> gene fusions in endometrial stromal sarcoma","year":2018,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Uterine Myomas and Treatments","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Spinal Cord Injury BC; BC Cancer Agency; Princess Margaret Cancer Centre; University of Toronto; University Health Network; University of British Columbia; Vancouver General Hospital; Mount Sinai Hospital","funders":"","keywords":"Endometrial stromal sarcoma; Stromal cell; Sarcoma; Cancer research; Fusion gene; Mesenchymal stem cell; Biology; Medicine; Gene; Oncology; Internal medicine; Pathology; Genetics","authors":[{"name":"Brendan C. Dickson","is_ca":true},{"name":"Amy Lum","is_ca":true},{"name":"David Swanson","is_ca":true},{"name":"Marcus Q. Bernardini","is_ca":true},{"name":"Terrence J. Colgan","is_ca":true},{"name":"Patricia A. Shaw","is_ca":true},{"name":"Stephen Yip","is_ca":true},{"name":"Cheng‐Han Lee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02611254515139009,"gpt":0.297469065620233,"spread":0.2713565204688428,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117597,0.0001931734,0.0001660416,0.0004226487,0.0002949073,0.0003218972,0.0001725934,0.0006467581,0.001331568],"category_scores_gemma":[0.0003213253,0.0001009304,0.0001594754,0.0002356028,0.0003393913,0.000219907,0.0003114215,0.000343427,0.0002441616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004096698,"about_ca_system_score_gemma":0.0001958169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006663663,"about_ca_topic_score_gemma":0.00157882,"domain_scores_codex":[0.9998877,0.000009132824,0.00001455042,0.00002792095,0.00003407755,0.00002658471],"domain_scores_gemma":[0.9998579,0.00002500762,0.000046766,0.00001473407,0.00001438573,0.00004117987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000393266,0.00007577563,0.03400195,0.0001795438,0.00004960533,0.0812035,0.0004647703,0.001002785,0.8427883,0.002671899,0.001278165,0.03589044],"study_design_scores_gemma":[0.00008437441,0.0004503234,0.1316324,0.00004457832,0.0002187031,0.3156262,0.0006561677,0.005274304,0.4993012,0.001727089,0.04492998,0.00005466164],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929329,0.001478102,0.00209137,0.0002394613,0.00004241821,0.00002953537,0.0002216768,0.00007305573,0.002891591],"genre_scores_gemma":[0.997621,0.0003320956,0.0009036982,0.00005719716,0.0000106364,0.000008711678,0.0001505123,0.000006533637,0.0009096942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001331568,"threshold_uncertainty_score":0.004454553,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039543196","doi":"10.1002/gcc.20939","title":"<i>PTEN</i> genomic deletions that characterize aggressive prostate cancer originate close to segmental duplications","year":2011,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Princess Margaret Cancer Centre; Queen's University","funders":"","keywords":"PTEN; Biology; Cancer research; Prostate cancer; Cowden syndrome; Comparative genomic hybridization; Cancer; Genetics; PI3K/AKT/mTOR pathway; Gene; Genome; Apoptosis","authors":[{"name":"Maisa Yoshimoto","is_ca":true},{"name":"Olga Ludkovski","is_ca":true},{"name":"Dave DeGrace","is_ca":true},{"name":"Julia L. Williams","is_ca":true},{"name":"Andrew Evans","is_ca":true},{"name":"Kanishka Sircar","is_ca":false},{"name":"Tarek A. Bismar","is_ca":true},{"name":"Paulo Nuin","is_ca":true},{"name":"Jeremy A. Squire","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04043175026836321,"gpt":0.3111207960073502,"spread":0.2706890457389869,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002352367,0.0002726736,0.0004617593,0.001039497,0.0001953045,0.0003788887,0.0001927958,0.000161631,0.001197069],"category_scores_gemma":[0.0004090758,0.0001412002,0.0003417012,0.001448572,0.0002983089,0.0001453656,0.000358746,0.000229389,0.0003365165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002598186,"about_ca_system_score_gemma":0.0002331107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001839614,"about_ca_topic_score_gemma":0.003467753,"domain_scores_codex":[0.9997821,0.00002105575,0.00001473609,0.0000764928,0.00006973463,0.00003576178],"domain_scores_gemma":[0.9997551,0.00004276483,0.0001344948,0.00002244632,0.00001512476,0.00002999662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006671672,0.00005119756,0.4635114,0.0004087086,0.0005759193,0.001903078,0.0002548916,0.001210233,0.4810332,0.0007564232,0.001371882,0.04825588],"study_design_scores_gemma":[0.00001306577,0.0001057294,0.9731849,0.000009178457,0.0001508546,0.005573143,0.00007166752,0.0003651534,0.01570924,0.0004455603,0.004361522,0.000009898539],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897748,0.001760826,0.002965642,0.00006916294,0.000005219773,0.00002976284,0.003066616,0.0001887985,0.0021392],"genre_scores_gemma":[0.9935452,0.0008130586,0.001264839,0.00008165541,0.00001260497,0.00002206597,0.003810615,0.00002300422,0.0004269756],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001839614,"threshold_uncertainty_score":0.004004598,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108373473","doi":"10.1002/1098-2264(2000)9999:9999<::aid-gcc1070>3.0.co;2-w","title":"Keratin 23 (K23), a novel acidic keratin, is highly induced by histone deacetylase inhibitors during differentiation of pancreatic cancer cells","year":2001,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Skin and Cellular Biology Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; Public Health Agency of Canada; Mayo Foundation for Medical Education and Research","keywords":"Molecular biology; Biology; Trichostatin A; Histone deacetylase inhibitor; Histone deacetylase; Histone; Gene; Biochemistry","authors":[{"name":"Jin‐San Zhang","is_ca":false},{"name":"Liang Wang","is_ca":false},{"name":"Haojie Huang","is_ca":false},{"name":"Matthew Nelson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01173593540042406,"gpt":0.2685023190841633,"spread":0.2567663836837393,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006287925,0.0003443937,0.0002522558,0.0001894224,0.0002058368,0.0002351358,0.0001013689,0.0001323532,0.0006785347],"category_scores_gemma":[0.00007694957,0.0001274986,0.0002650329,0.0003054002,0.0001259031,0.0001242638,0.0001583841,0.0003322601,0.0003188496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002959128,"about_ca_system_score_gemma":0.0002432605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009852255,"about_ca_topic_score_gemma":0.001515769,"domain_scores_codex":[0.9999111,0.00000812224,0.000009496384,0.00001945939,0.00002875207,0.00002306505],"domain_scores_gemma":[0.9999127,0.000009613475,0.00002445374,0.000007651165,0.00001613174,0.00002950542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005144046,0.00000489526,0.000243649,0.00001939682,0.000003968766,0.00005332622,0.000008057945,0.000012928,0.9990624,0.00001079473,0.00001652602,0.0005127357],"study_design_scores_gemma":[0.000007313607,0.0001562836,0.01668551,0.000005082848,0.00002890776,0.000529245,0.00005666486,0.0002692053,0.9780481,0.0000197429,0.0041894,0.000004469388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929743,0.00263561,0.002410299,0.0000560355,0.00003013479,0.00003564375,0.0006365184,0.00009320801,0.001128354],"genre_scores_gemma":[0.9910194,0.002111825,0.002460149,0.00003864393,0.000008907256,0.00005600385,0.001440023,0.0000249279,0.002840225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009852255,"threshold_uncertainty_score":0.002269924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2566171081","doi":"10.1002/gcc.22439","title":"Characterisation of the genomic landscape of <i>CRLF2</i>‐rearranged acute lymphoblastic leukemia","year":2016,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Blood Cancer UK; Leukaemia and Lymphoma Research; Cancer Research UK; Leuka; Children's Cancer and Leukaemia Group; Bloodwise; Hospital for Sick Children; Kay Kendall Leukaemia Fund; National Cancer Research Institute","keywords":"Clinical significance; Internal medicine; Gene; Copy-number variation; Medicine; Lymphoblastic Leukemia; Oncology; Biology; Cancer research; Immunology; Genetics; Leukemia; Genome","authors":[{"name":"Lisa J. Russell","is_ca":false},{"name":"Lisa Jones","is_ca":false},{"name":"Amir Enshaei","is_ca":false},{"name":"Stefano Tonin","is_ca":false},{"name":"Sarra Ryan","is_ca":false},{"name":"Jeyanthy Eswaran","is_ca":false},{"name":"Sirintra Nakjang","is_ca":false},{"name":"Elli Papaemmanuil","is_ca":false},{"name":"José M. C. Tubío","is_ca":false},{"name":"Adele K. Fielding","is_ca":false},{"name":"Ajay Vora","is_ca":false},{"name":"Peter J. Campbell","is_ca":false},{"name":"Anthony V. Moorman","is_ca":false},{"name":"Christine J. Harrison","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0109714861189448,"gpt":0.2533373062039507,"spread":0.2423658200850059,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001000212,0.0001033441,0.0001438866,0.0005062034,0.00009702367,0.0002840295,0.0001154132,0.000157957,0.0008838094],"category_scores_gemma":[0.0003343748,0.00007850149,0.00008391358,0.0003040797,0.0001472024,0.0001210006,0.0001506626,0.0001500975,0.0001999099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001247056,"about_ca_system_score_gemma":0.00005294996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005534819,"about_ca_topic_score_gemma":0.0005909185,"domain_scores_codex":[0.9998918,0.00001919409,0.000007867239,0.00003189065,0.00002042468,0.00002886415],"domain_scores_gemma":[0.9998515,0.00003935645,0.00005776616,0.00001134768,0.00001551899,0.00002449461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009555095,0.0000469243,0.4331112,0.00007356099,0.00004740499,0.001214174,0.0002828184,0.0003253157,0.5415386,0.0001791004,0.0002373885,0.02198808],"study_design_scores_gemma":[0.00001638431,0.0002893399,0.9731434,0.000008358414,0.00002671832,0.006923995,0.0002313263,0.0006757846,0.0168566,0.000112353,0.001711132,0.000004716693],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991533,0.0001850322,0.0001844654,0.00001688116,7.764976e-7,0.000003664714,0.0001365435,0.000006388828,0.0003129363],"genre_scores_gemma":[0.9993018,0.00008835162,0.0001857305,0.00001665476,0.000003737664,0.000004573995,0.0002915316,0.000003187823,0.0001044251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008838094,"threshold_uncertainty_score":0.002956688,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1978959944","doi":"10.1002/gcc.10025","title":"Molecular cytogenetic characterization of non‐Hodgkin lymphoma cell lines","year":2001,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Breakpoint; Biology; Chromosomal translocation; Karyotype; Comparative genomic hybridization; Cytogenetics; Lymphoma; Genetics; Molecular biology; Chromosome; Gene; Immunology","authors":[{"name":"Sukvarsha Mehra","is_ca":false},{"name":"Hans A. Messner","is_ca":true},{"name":"Mark D. Minden","is_ca":true},{"name":"R. S. K. Chaganti","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006286741215232927,"gpt":0.2212395157044879,"spread":0.214952774489255,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001917536,0.0002009172,0.000224061,0.00070118,0.0003107808,0.0004057157,0.000301618,0.0001773808,0.001243316],"category_scores_gemma":[0.0002364404,0.0001120097,0.0001626132,0.0005210777,0.0002241031,0.00012191,0.0002089799,0.0002466579,0.0004495973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007454896,"about_ca_system_score_gemma":0.0004600236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01537821,"about_ca_topic_score_gemma":0.03017453,"domain_scores_codex":[0.9997804,0.00002272191,0.00002674661,0.00003322276,0.0000929924,0.00004401477],"domain_scores_gemma":[0.9997855,0.00004865298,0.0000245919,0.00004099535,0.00006008603,0.00004030124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000135833,0.00004486968,0.009455332,0.00005636906,0.00001043745,0.0002495068,0.0001823712,0.0001694603,0.9857199,0.0002076974,0.0002174528,0.003550801],"study_design_scores_gemma":[0.0001529264,0.0009136942,0.3506587,0.00002753464,0.00009349256,0.002602603,0.0007738055,0.002312138,0.6158732,0.0001623704,0.02641061,0.00001897508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877559,0.001190916,0.003805634,0.0001262258,0.00001261016,0.0002379151,0.003256564,0.0001049478,0.003509241],"genre_scores_gemma":[0.9758807,0.001478641,0.004785255,0.0001042173,0.0000107093,0.0003760448,0.01322083,0.00003440199,0.004109288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01537821,"threshold_uncertainty_score":0.03057742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3095813532","doi":"10.1002/gcc.22913","title":"<scp>DICER1‐associated</scp> embryonal rhabdomyosarcoma and adenosarcoma of the gynecologic tract: Pathology, molecular genetics, and indications for molecular testing","year":2020,"lang":"en","type":"review","venue":"Genes Chromosomes and Cancer","topic":"Congenital Diaphragmatic Hernia Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Germline; Embryonal rhabdomyosarcoma; Germline mutation; Pathological; Genetic testing; Genitourinary system; Cancer; Rhabdomyosarcoma; Sarcoma; Pathology; Mutation; Genetics; Gene; Medicine; Anatomy","authors":[{"name":"María Apellániz-Ruiz","is_ca":false},{"name":"W. Glenn McCluggage","is_ca":false},{"name":"William D. Foulkes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03868391198108546,"gpt":0.3139636911541852,"spread":0.2752797791730997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003746897,0.0003539646,0.0003902179,0.000958727,0.0002762021,0.0003371377,0.0002975633,0.0007618429,0.002806672],"category_scores_gemma":[0.001111944,0.0001399261,0.0003062329,0.0005211391,0.0003636114,0.0005692757,0.0003199095,0.0006731655,0.001142027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002675417,"about_ca_system_score_gemma":0.0004307041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001075376,"about_ca_topic_score_gemma":0.001643823,"domain_scores_codex":[0.9998013,0.00003817751,0.00003401947,0.0000251921,0.00006912909,0.00003216746],"domain_scores_gemma":[0.9994625,0.0001883332,0.0001045995,0.00002692437,0.0001100453,0.0001075021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008770037,0.0001231753,0.2917875,0.00193527,0.00009067111,0.2062793,0.000371397,0.0008531042,0.05758056,0.003139148,0.03075195,0.4062108],"study_design_scores_gemma":[0.00005151362,0.0002426216,0.1991321,0.0008991339,0.0000831837,0.6774291,0.0005131414,0.001066092,0.01418877,0.002804161,0.1035338,0.00005643949],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.7168764,0.1612437,0.01524323,0.01433629,0.0007648579,0.0003688993,0.002852048,0.0009227607,0.08739179],"genre_scores_gemma":[0.9305665,0.0370258,0.01607597,0.003085263,0.0009206841,0.00009832864,0.002914483,0.000109847,0.009203085],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.002806672,"threshold_uncertainty_score":0.009389222,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120258802","doi":"10.1002/gcc.20907","title":"Molecular profiling reveals frequent gain of <i>MYCN</i> and anaplasia‐specific loss of 4q and 14q in wilms tumor","year":2011,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Breakthrough Cancer Research; Cancer Research UK; Leukaemia and Lymphoma Research; Children's Cancer and Leukaemia Group","keywords":"Anaplasia; Wilms' tumor; Cancer research; Biology; Computational biology; Genetics","authors":[{"name":"Richard D. Williams","is_ca":false},{"name":"Reem Al‐Saadi","is_ca":false},{"name":"Rachael Natrajan","is_ca":false},{"name":"Alan Mackay","is_ca":false},{"name":"Tasnim Chagtai","is_ca":false},{"name":"Suzanne E. Little","is_ca":false},{"name":"Sandra Hing","is_ca":false},{"name":"Kerry Fenwick","is_ca":false},{"name":"Alan Ashworth","is_ca":false},{"name":"Paul E. Grundy","is_ca":true},{"name":"James R. Anderson","is_ca":false},{"name":"Jeffrey S. Dome","is_ca":false},{"name":"Elizabeth J. Perlman","is_ca":false},{"name":"Chris Jones","is_ca":false},{"name":"Kathy Pritchard‐Jones","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02424408077191632,"gpt":0.261872120575308,"spread":0.2376280398033916,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001037255,0.0001537968,0.0001707075,0.0008300261,0.0001557611,0.000249094,0.00008851908,0.0001885192,0.0006855914],"category_scores_gemma":[0.0002708335,0.0001612915,0.0001057874,0.0002863912,0.0002233403,0.0001333802,0.0001416875,0.0001629992,0.000191571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001678804,"about_ca_system_score_gemma":0.0000841174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005799659,"about_ca_topic_score_gemma":0.0008533758,"domain_scores_codex":[0.9998941,0.00001173968,0.00001047112,0.00002289648,0.00003779512,0.0000228934],"domain_scores_gemma":[0.9998773,0.00002837847,0.0000377366,0.000009516889,0.00001609142,0.00003091018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001926626,0.0000155064,0.04144495,0.00002063923,0.00001467992,0.001408393,0.00006882915,0.0001387259,0.9531318,0.00004970118,0.00006878663,0.003445344],"study_design_scores_gemma":[0.00002355632,0.0004418383,0.6978011,0.000007309018,0.00009039606,0.01811711,0.000286751,0.002811994,0.2779321,0.0002657481,0.002208566,0.00001356312],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991974,0.00009838225,0.0003636096,0.0000173317,0.000001326224,0.00000334026,0.00008420329,0.0000150883,0.0002193322],"genre_scores_gemma":[0.9988739,0.0001097539,0.0005611163,0.00001244468,0.000003195755,0.000004102903,0.0001972599,0.00000367474,0.0002344526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008300261,"threshold_uncertainty_score":0.002293587,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065458378","doi":"10.1002/gcc.20088","title":"Various types of rearrangements target <i>TLX3</i> locus in T‐cell acute lymphoblastic leukemia","year":2004,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hotel Dieu Hospital","funders":"","keywords":"Chromosomal translocation; Biology; Breakpoint; Genetics; Ectopic expression; Locus (genetics); Gene; Molecular biology","authors":[{"name":"Xin Ying Su","is_ca":false},{"name":"Maryvonne Busson","is_ca":false},{"name":"Véronique Della Valle","is_ca":false},{"name":"Paola Ballerini","is_ca":false},{"name":"Nicole Dastugue","is_ca":false},{"name":"Pascaline Talmant","is_ca":true},{"name":"Adolfo A. Ferrando","is_ca":false},{"name":"Dominique Bluteau","is_ca":false},{"name":"Serge Romana","is_ca":false},{"name":"Roland Berger","is_ca":false},{"name":"Olivier Bernard","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009308282933789498,"gpt":0.2638259428662081,"spread":0.2545176599324186,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001341414,0.0001731133,0.00008558154,0.0005829678,0.0002261065,0.0003204058,0.0001364787,0.0002341541,0.00125048],"category_scores_gemma":[0.0002780694,0.0001267137,0.0001573704,0.0005460789,0.0003889249,0.000168979,0.0003182224,0.0002959097,0.0003418718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002977986,"about_ca_system_score_gemma":0.0001268438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006470174,"about_ca_topic_score_gemma":0.001049273,"domain_scores_codex":[0.9998786,0.0000225415,0.00001790172,0.00002266825,0.00002895788,0.00002932629],"domain_scores_gemma":[0.9998895,0.00003036854,0.00003404289,0.00001499411,0.000007251959,0.0000238234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007709569,0.00003030237,0.05286757,0.0001200041,0.00003067686,0.006137097,0.0002535578,0.0005944817,0.9177024,0.001480054,0.0003290505,0.01968386],"study_design_scores_gemma":[0.00009455696,0.0004625442,0.4275855,0.00004379182,0.0001521349,0.08779837,0.0004352313,0.001306089,0.4620472,0.002156892,0.01788941,0.00002831908],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948735,0.001323407,0.001491289,0.0000845708,0.000006042869,0.000009285835,0.0001615073,0.00005448815,0.001995934],"genre_scores_gemma":[0.9972116,0.0009142566,0.0008900059,0.00002817661,0.00000683649,0.0000080307,0.0003422425,0.00001249066,0.0005863536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00125048,"threshold_uncertainty_score":0.004183233,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145448213","doi":"10.1002/gcc.20780","title":"High resolution analysis of follicular lymphoma genomes reveals somatic recurrent sites of copy‐neutral loss of heterozygosity and copy number alterations that target single genes","year":2010,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute; Canadian Institutes of Health Research; University of British Columbia; Provincial Health Services Authority","keywords":"Loss of heterozygosity; CDKN2A; Biology; Comparative genomic hybridization; SNP array; Copy number analysis; Genetics; Follicular lymphoma; FHIT; Carcinogenesis; Chromosomal translocation; Gene dosage; Genome; Somatic cell; Copy-number variation; Gene; Cancer research; Single-nucleotide polymorphism; Tumor suppressor gene; Lymphoma; Genotype; Gene expression; Allele","authors":[{"name":"K-John Cheung","is_ca":true},{"name":"Allen Delaney","is_ca":false},{"name":"Susana Ben‐Neriah","is_ca":true},{"name":"Jacquie Schein","is_ca":false},{"name":"Tang Lee","is_ca":true},{"name":"Sohrab P. Shah","is_ca":true},{"name":"Dorothy Cheung","is_ca":false},{"name":"Nathalie A. Johnson","is_ca":true},{"name":"Andrew J. Mungall","is_ca":false},{"name":"Adèle Telenius","is_ca":true},{"name":"Betty Lai","is_ca":true},{"name":"Merrill Boyle","is_ca":true},{"name":"Joseph M. Connors","is_ca":true},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"Marco A. Marra","is_ca":false},{"name":"Douglas E. Horsman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01830622849796035,"gpt":0.275795318791569,"spread":0.2574890902936086,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002275698,0.0001620259,0.0001857925,0.0007607083,0.0001653517,0.0002842262,0.0001755369,0.0001941252,0.000694324],"category_scores_gemma":[0.0005554956,0.0001330556,0.000161087,0.0004856294,0.0001097449,0.0001309615,0.000297428,0.0002011725,0.0001282884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002153743,"about_ca_system_score_gemma":0.00009076032,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001082958,"about_ca_topic_score_gemma":0.002418729,"domain_scores_codex":[0.9998004,0.00004132554,0.000009140191,0.00005736159,0.00006453668,0.00002726746],"domain_scores_gemma":[0.9998305,0.00006771954,0.00005147677,0.00001823753,0.00001602145,0.00001605392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003539604,0.00006040535,0.05903604,0.0001100181,0.0001620646,0.0003868393,0.0001414738,0.003234655,0.9005886,0.0002556847,0.0002252142,0.03544493],"study_design_scores_gemma":[0.00004544701,0.0003736315,0.7192571,0.00001340308,0.0001726616,0.003544134,0.0002100263,0.04143064,0.2314638,0.0007751344,0.002683151,0.00003086184],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949213,0.0002161813,0.004088997,0.00003122571,0.0000010175,0.00001063001,0.0004191147,0.00007893994,0.0002326203],"genre_scores_gemma":[0.9905999,0.00009805007,0.008276897,0.00001856848,0.000001737831,0.00001421819,0.0007782848,0.000009107483,0.000203265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001082958,"threshold_uncertainty_score":0.002322793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}