{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":113,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":113,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"05b34b036ea5","filters":{"venue":"Genes and Immunity"}},"results":[{"id":"W2035109614","doi":"10.1038/sj.gene.6364159","title":"The PTPN22 R620W polymorphism associates with RF positive rheumatoid arthritis in a dose-dependent manner but not with HLA-SE status","year":2004,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":205,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institutes of Health; Abbott Laboratories","keywords":"PTPN22; Rheumatoid arthritis; Allele; Single-nucleotide polymorphism; Biology; Immunology; Rheumatoid factor; Internal medicine; Genetics; Genotype; Medicine; Gene","authors":[{"name":"A T Lee","is_ca":false},{"name":"Wentian Li","is_ca":false},{"name":"Anthony Liew","is_ca":false},{"name":"Claire Bombardier","is_ca":true},{"name":"Michael H. Weisman","is_ca":false},{"name":"Elena Massarotti","is_ca":false},{"name":"J Kent","is_ca":false},{"name":"Frederick Wolfe","is_ca":false},{"name":"A. B. Begovich","is_ca":false},{"name":"Peter K. Gregersen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006078909858840812,"gpt":0.2106664061533539,"spread":0.204587496294513,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007436962,0.0008040518,0.000764607,0.001286396,0.0003768658,0.0004488738,0.0004964598,0.0007799185,0.006241404],"category_scores_gemma":[0.001925431,0.0005874786,0.0008643813,0.0006953965,0.0005621274,0.0003391989,0.0004219687,0.0009442582,0.001327724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000123414,"about_ca_system_score_gemma":0.00012853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003252237,"about_ca_topic_score_gemma":0.0003101557,"domain_scores_codex":[0.9991869,0.0003745241,0.0000635758,0.0001725739,0.0001370172,0.00006536816],"domain_scores_gemma":[0.9968347,0.001164877,0.00099397,0.0004975662,0.0001349225,0.0003740367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006636336,0.0007405811,0.360402,0.000161117,0.001120667,0.004123372,0.000269274,0.0003127813,0.6171169,0.0002571017,0.0004325735,0.008427356],"study_design_scores_gemma":[0.00008533607,0.001656157,0.9684685,0.00001645121,0.00047303,0.009862525,0.0000833281,0.0005597247,0.01772462,0.0001700769,0.0008800342,0.0000201935],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966428,0.0006486345,0.0009201374,0.00008256298,0.00003740469,0.00001246122,0.0001802461,0.00006162759,0.00141401],"genre_scores_gemma":[0.9968106,0.0002125736,0.0002610031,0.00003321483,0.0000507466,0.00001416019,0.0001560575,0.00003729923,0.002424309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006241404,"threshold_uncertainty_score":0.02087963,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055519354","doi":"10.1038/gene.2012.12","title":"The immunoglobulin heavy chain locus: genetic variation, missing data, and implications for human disease","year":2012,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":200,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Biology; Genetics; IGHV@; Germline; Locus (genetics); Haplotype; Gene; Antibody Repertoire; Immunoglobulin heavy chain; Antibody; Genome; Genetic variation; Copy-number variation; Computational biology; Genotype","authors":[{"name":"Corey T. Watson","is_ca":true},{"name":"Felix Breden","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06282429185020813,"gpt":0.3170290996353435,"spread":0.2542048077851353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001548421,0.001303043,0.00227155,0.001615537,0.0002437873,0.001386795,0.001824303,0.002180118,0.002308103],"category_scores_gemma":[0.001811319,0.0003905313,0.0004141218,0.002508631,0.001394948,0.002109804,0.0009187813,0.002810872,0.001921889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009259105,"about_ca_system_score_gemma":0.001509045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001051854,"about_ca_topic_score_gemma":0.001629789,"domain_scores_codex":[0.9996259,0.0000589755,0.00005232689,0.0001009124,0.0001269245,0.00003494722],"domain_scores_gemma":[0.9988361,0.0005633717,0.0001689104,0.00003678025,0.0002497639,0.0001450155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001657838,0.00003936579,0.0005110329,0.006854156,0.0001113987,0.0003409273,0.00003773663,0.0003042952,0.001974707,0.002863607,0.06577068,0.9210264],"study_design_scores_gemma":[0.00003927896,0.00005770506,0.001869222,0.002326191,0.0001845622,0.002599281,0.00009241798,0.0001287761,0.0004174979,0.005067697,0.9871793,0.00003813028],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007510067,0.9981176,0.0002087222,0.000758253,0.0005492814,0.000001326188,0.00002026986,0.000007952174,0.0002615117],"genre_scores_gemma":[0.0005153437,0.9972072,0.0002524056,0.0006163041,0.001065239,0.000002965557,0.00004611432,0.000002297259,0.000292111],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002308103,"threshold_uncertainty_score":0.008188963,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2322229996","doi":"10.1038/sj.gene.6363661","title":"Genetic polymorphism of IL-12 p40 gene in immune-mediated disease","year":2000,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":153,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Biology; Immunology; Allele; Genetics; Immune system; Genotype; Genotyping; Autoimmune disease; Rheumatoid arthritis; Arthritis; Population; Gene; Antibody; Medicine","authors":[{"name":"MA Hall","is_ca":false},{"name":"Edwina McGlinn","is_ca":true},{"name":"Gillian Coakley","is_ca":true},{"name":"SA Fisher","is_ca":false},{"name":"K Boki","is_ca":false},{"name":"Derek Middleton","is_ca":false},{"name":"E. Kaklamani","is_ca":false},{"name":"Haralampos Μ. Moutsopoulos","is_ca":false},{"name":"TP Loughran","is_ca":false},{"name":"WER Ollier","is_ca":false},{"name":"G. S. Panayi","is_ca":true},{"name":"J. S. Lanchbury","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009235279538663944,"gpt":0.2008327472979755,"spread":0.1915974677593116,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004361568,0.0008303856,0.0006729176,0.002188339,0.0006910517,0.0003491149,0.0005112494,0.001278393,0.004155902],"category_scores_gemma":[0.001257041,0.0002762506,0.0005145624,0.001113802,0.0008092279,0.0003439868,0.0004291584,0.0009891377,0.000525964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002121793,"about_ca_system_score_gemma":0.0002262861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007367315,"about_ca_topic_score_gemma":0.0003629548,"domain_scores_codex":[0.999331,0.0002891676,0.00007468285,0.0001263193,0.00007710014,0.0001017302],"domain_scores_gemma":[0.9986206,0.0007063517,0.0002040435,0.00006857981,0.00009176553,0.0003086228],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.03155931,0.001712082,0.2627152,0.0003090955,0.0006251942,0.0397671,0.00140403,0.0009276717,0.6363637,0.00288279,0.0007293158,0.02100454],"study_design_scores_gemma":[0.0009994211,0.003711578,0.8657858,0.0001469614,0.001065566,0.05869255,0.0009938623,0.003986921,0.05729392,0.003535091,0.003672143,0.0001162538],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979686,0.0003392198,0.000626319,0.0001414452,0.00003332008,0.00001187349,0.000139916,0.00002137793,0.000717901],"genre_scores_gemma":[0.9986781,0.0001324806,0.0003076511,0.00003835521,0.0000702036,0.000009793855,0.0001041353,0.0000141486,0.0006449813],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004155902,"threshold_uncertainty_score":0.0139029,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140541855","doi":"10.1038/sj.gene.6364398","title":"The role of the Toll receptor pathway in susceptibility to inflammatory bowel diseases","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":147,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute; University of Toronto; Mount Sinai Hospital; Hôpital Fleurimont; Centre Hospitalier Universitaire de Sherbrooke; McGill University Health Centre; McGill University; Jewish General Hospital; Montreal General Hospital","funders":"National Institute of Neurological Disorders and Stroke; Fonds De La Recherche Scientifique - FNRS; Pfizer; National Institute of Diabetes and Digestive and Kidney Diseases; Crohn's and Colitis Foundation of America","keywords":"Inflammatory bowel disease; Biology; Immunology; Allele; Ulcerative colitis; Odds ratio; TLR4; Genotyping; Toll-like receptor; Haplotype; NOD2; Disease; Genetics; Genotype; Gene; Internal medicine; Inflammation; Medicine; Immune system; Innate immune system","authors":[{"name":"Philip L. De Jager","is_ca":false},{"name":"Denis Franchimont","is_ca":true},{"name":"Alicja Waliszewska","is_ca":false},{"name":"Alain Bitton","is_ca":true},{"name":"Alexandra Cohen","is_ca":true},{"name":"Diane Langelier","is_ca":true},{"name":"Jacques Bélaïche","is_ca":false},{"name":"Séverine Vermeire","is_ca":false},{"name":"Lisa Farwell","is_ca":false},{"name":"An Goris","is_ca":false},{"name":"Cécile Libioulle","is_ca":false},{"name":"Niraj Jani","is_ca":false},{"name":"T. Dassopoulos","is_ca":false},{"name":"Gillian Bromfield","is_ca":false},{"name":"Bertrand Dubois","is_ca":false},{"name":"J H Cho","is_ca":false},{"name":"Steven R. Brant","is_ca":false},{"name":"Richard H. Duerr","is_ca":false},{"name":"Huiying Yang","is_ca":false},{"name":"JI Rotter","is_ca":false},{"name":"Mark S. Silverberg","is_ca":true},{"name":"A. Hillary Steinhart","is_ca":true},{"name":"Mark J. Daly","is_ca":false},{"name":"Daniel K. Podolsky","is_ca":false},{"name":"E Louis","is_ca":false},{"name":"David A. Hafler","is_ca":false},{"name":"John D. Rioux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005251646108765755,"gpt":0.2124631896139184,"spread":0.2072115435051527,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002674438,0.0002676724,0.0002905913,0.0005301549,0.0001307859,0.0003801035,0.0001362752,0.0003534925,0.001476723],"category_scores_gemma":[0.0005406273,0.0001244083,0.0001501115,0.0002075179,0.0002578982,0.000311943,0.0002990715,0.0004732711,0.0002099584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000140671,"about_ca_system_score_gemma":0.0001302239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001475941,"about_ca_topic_score_gemma":0.0001141854,"domain_scores_codex":[0.9998379,0.000073486,0.00001367622,0.00002112285,0.00002070788,0.00003309584],"domain_scores_gemma":[0.999755,0.00007116608,0.00007856271,0.00001970843,0.00001851595,0.0000571054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01630986,0.0003172634,0.1558936,0.0005223903,0.0002250671,0.003627612,0.000243948,0.00133722,0.7125601,0.003912414,0.0012576,0.1037929],"study_design_scores_gemma":[0.0004807113,0.002140567,0.8659174,0.0002241202,0.0003830486,0.01537791,0.0006947693,0.0048515,0.08576103,0.01215083,0.01194498,0.00007313134],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9808446,0.01496437,0.001033342,0.0008234378,0.00005395753,0.000006971003,0.0001795904,0.00002873671,0.002064865],"genre_scores_gemma":[0.9971934,0.001782674,0.0003577979,0.00006083007,0.00003867701,0.000004374497,0.00004973668,0.000004899784,0.0005076926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001476723,"threshold_uncertainty_score":0.004940152,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970546858","doi":"10.1038/sj.gene.6363985","title":"Genetic variants of the IL13 and IL4 genes and atopic diseases in at-risk children","year":2003,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; St. Paul's Hospital; University of British Columbia","funders":"Canada Research Chairs","keywords":"Atopy; Atopic dermatitis; Haplotype; Biology; Allele; Interleukin 13; Immunology; Interleukin 4; Genetics; Allergy; Gene","authors":[{"name":"Jian‐Qing He","is_ca":true},{"name":"Moira Chan‐Yeung","is_ca":false},{"name":"Allan B. Becker","is_ca":true},{"name":"Helen Dimich‐Ward","is_ca":false},{"name":"Alexander C. Ferguson","is_ca":true},{"name":"Jure Manfreda","is_ca":true},{"name":"Wade Watson","is_ca":true},{"name":"ANDREW J. SANDFORD","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00749570386616569,"gpt":0.2232677695043074,"spread":0.2157720656381417,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000473072,0.0007861032,0.0006479084,0.001192298,0.0006825172,0.0005564128,0.000482007,0.001206582,0.003766416],"category_scores_gemma":[0.001943636,0.0004425805,0.0006192423,0.001136788,0.000579176,0.0004559129,0.0003289494,0.001014127,0.0003055429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002645013,"about_ca_system_score_gemma":0.0002746942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003264883,"about_ca_topic_score_gemma":0.00229372,"domain_scores_codex":[0.9993657,0.0002304811,0.00005831377,0.0001097237,0.0001299266,0.0001057897],"domain_scores_gemma":[0.9988406,0.0005082106,0.0003029247,0.00004946571,0.00008938822,0.0002093952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002618512,0.0003015385,0.972975,0.00003966883,0.0003025931,0.004693822,0.0004092556,0.0003523251,0.01404459,0.0003463069,0.000305354,0.003611002],"study_design_scores_gemma":[0.000121619,0.0006637116,0.985283,0.00002809207,0.0003676346,0.008743904,0.0005567504,0.0009923838,0.002273612,0.0004340341,0.0005106822,0.00002458375],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990249,0.0001849566,0.0001384425,0.00008235672,0.00001214377,0.000004781244,0.0001030587,0.000004793626,0.000444601],"genre_scores_gemma":[0.9989123,0.000125297,0.0002832299,0.00004174367,0.00003041969,0.000008354277,0.0001281063,0.000008593207,0.0004619861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003766416,"threshold_uncertainty_score":0.01259995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W32848451","doi":"10.1038/gene.2011.34","title":"Genome-wide association study of severity in multiple sclerosis","year":2011,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Multiple Sclerosis Research Studies","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Neurological Disorders and Stroke; National Institute of Mental Health; National Institutes of Health; National Institute for Health and Care Research; Ministère de la Santé et des Services sociaux; Wellcome Trust","keywords":"Multiple sclerosis; Biology; Genome-wide association study; Disease; Single-nucleotide polymorphism; Genetics; Genetic association; Genetic architecture; Phenotype; Genetic predisposition; Genotype; Gene; Immunology; Medicine; Internal medicine","authors":[{"name":"Farren Briggs","is_ca":false},{"name":"Xiaorong Shao","is_ca":false},{"name":"Benjamin A. Goldstein","is_ca":false},{"name":"Jorge R. Oksenberg","is_ca":false},{"name":"Lisa F. Barcellos","is_ca":false},{"name":"Philip L. De Jager","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1419481136332527,"gpt":0.2944794012635827,"spread":0.15253128763033,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00223948,0.0005811304,0.000663544,0.001518164,0.0009216971,0.0007719841,0.000540527,0.0007874479,0.001671962],"category_scores_gemma":[0.004240357,0.0003840954,0.001108179,0.002083071,0.0005448768,0.0004099882,0.0008368782,0.00113824,0.0001396514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002561715,"about_ca_system_score_gemma":0.0004350705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004984878,"about_ca_topic_score_gemma":0.005140691,"domain_scores_codex":[0.9976345,0.001492281,0.000211465,0.0003675635,0.0001638843,0.0001302754],"domain_scores_gemma":[0.9971393,0.0009697717,0.0007969714,0.0004134651,0.0002440335,0.000436422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003110324,0.0001339455,0.9838699,0.00005681838,0.002621888,0.0003002466,0.000245722,0.0001321618,0.006326362,0.0001473407,0.0002261354,0.002829249],"study_design_scores_gemma":[0.00005895191,0.0002110153,0.998049,0.000004949007,0.000664565,0.0002068897,0.00011597,0.0001551305,0.0002521717,0.00008935052,0.0001866645,0.000005269919],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985023,0.0006040039,0.0002023849,0.0001425519,0.00001890787,0.000004474758,0.0001959706,0.000008589113,0.0003207403],"genre_scores_gemma":[0.999365,0.0001228014,0.0001470627,0.000027292,0.00001762697,0.000003477378,0.0001103074,0.000004396283,0.0002020086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004984878,"threshold_uncertainty_score":0.01184362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2334794135","doi":"10.1038/gene.2014.82","title":"HLA-DRB1*03:01 and HLA-DRB1*04:01 modify the presentation and outcome in autoimmune hepatitis type-1","year":2015,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Alberta Innovates - Health Solutions","keywords":"Autoimmune hepatitis; HLA-DRB1; Allele; Human leukocyte antigen; Immunology; Biology; Genotype; Hepatitis; Genetics; Antigen; Gene","authors":[{"name":"Nicole M. F. van Gerven","is_ca":false},{"name":"Ynto S. de Boer","is_ca":false},{"name":"Antonie Zwiers","is_ca":false},{"name":"Bart J. Verwer","is_ca":false},{"name":"Joost P.H. Drenth","is_ca":false},{"name":"Bart van Hoek","is_ca":false},{"name":"Karel J. van Erpecum","is_ca":false},{"name":"Ulrich Beuers","is_ca":false},{"name":"Henk R. van Buuren","is_ca":false},{"name":"Jannie W. den Ouden","is_ca":false},{"name":"Robert C. Verdonk","is_ca":false},{"name":"Ger H. Koek","is_ca":false},{"name":"J.T. Brouwer","is_ca":false},{"name":"Maureen M. J. Guichelaar","is_ca":false},{"name":"Jan Maarten Vrolijk","is_ca":false},{"name":"Minneke J. Coenraad","is_ca":false},{"name":"Georg Kraal","is_ca":false},{"name":"Chris J. Mulder","is_ca":false},{"name":"Carin M.J. van Nieuwkerk","is_ca":false},{"name":"Elisabeth Bloemena","is_ca":false},{"name":"Hein W. Verspaget","is_ca":false},{"name":"Vinod Kumar","is_ca":false},{"name":"Alexandra Zhernakova","is_ca":false},{"name":"Cisca Wijmenga","is_ca":false},{"name":"Lude Franke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05617649951274737,"gpt":0.309964798222078,"spread":0.2537882987093306,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005875069,0.0004041469,0.000373505,0.0003610202,0.000290053,0.0006926371,0.0002961428,0.0005569384,0.002522054],"category_scores_gemma":[0.001904641,0.0002840731,0.0003797696,0.0005389903,0.0003226708,0.0004196859,0.0003213229,0.0008371195,0.0005954989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000180268,"about_ca_system_score_gemma":0.0001354198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000480698,"about_ca_topic_score_gemma":0.000321462,"domain_scores_codex":[0.9994909,0.0003021884,0.0000306741,0.00004894505,0.00004039027,0.00008693976],"domain_scores_gemma":[0.9987938,0.0002658673,0.0004876967,0.0001295803,0.00006288641,0.0002600707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.009190959,0.0007888065,0.9170354,0.00007972889,0.0005053054,0.0008249123,0.0003825961,0.0003234909,0.05449038,0.0002927036,0.0003671308,0.01571861],"study_design_scores_gemma":[0.0001049987,0.0008227901,0.994266,0.00001213602,0.0001736127,0.0008619075,0.0001943999,0.0003622065,0.002364592,0.0003648271,0.0004600903,0.00001237253],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999183,0.0002446692,0.00005269925,0.00004341753,0.00001127371,0.000001705309,0.0000214462,0.000003735032,0.0004381349],"genre_scores_gemma":[0.9993721,0.00007980881,0.00003802039,0.00003119206,0.00001335344,0.000001879795,0.00003336831,0.000006893298,0.0004235707],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002522054,"threshold_uncertainty_score":0.008437097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045919491","doi":"10.1038/sj.gene.6364400","title":"Distinctive gene expression signatures in rheumatoid arthritis synovial tissue fibroblast cells: correlates with disease activity","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Rheumatoid Arthritis Research and Therapies","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"Arthritis Society; Genome Canada","keywords":"Biology; Rheumatoid arthritis; Gene expression profiling; Immunology; Gene signature; Gene expression; Erythrocyte sedimentation rate; Arthritis; Cancer research; Gene; Internal medicine; Medicine; Genetics","authors":[{"name":"Carole L. Galligan","is_ca":true},{"name":"E Baig","is_ca":true},{"name":"Vivian P. Bykerk","is_ca":true},{"name":"Edward Keystone","is_ca":true},{"name":"Eleanor N. Fish","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007566655329279317,"gpt":0.2436785842348025,"spread":0.2361119289055232,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001923828,0.0001459378,0.0002868262,0.0008051325,0.000230804,0.0004191588,0.0000858038,0.0002443544,0.001467966],"category_scores_gemma":[0.0003159799,0.0001003482,0.0001923804,0.0005785032,0.0002033963,0.0001613955,0.0002399391,0.0002360275,0.0003926627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008976943,"about_ca_system_score_gemma":0.0001031701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002268127,"about_ca_topic_score_gemma":0.0004221842,"domain_scores_codex":[0.999737,0.00003590978,0.00002790079,0.00005837199,0.00006224395,0.0000786505],"domain_scores_gemma":[0.9996749,0.00007960408,0.00009226207,0.00002503745,0.00005220374,0.00007596947],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006248747,0.00002816022,0.02564134,0.0000420394,0.0000215951,0.0001445757,0.0001074153,0.00002452085,0.9700627,0.00004136782,0.00004919283,0.003212069],"study_design_scores_gemma":[0.00003822599,0.0007320101,0.8518241,0.00001532521,0.00008820216,0.002636002,0.0007067609,0.0003782944,0.1414821,0.000164424,0.001915438,0.00001910302],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972581,0.001027392,0.0004006061,0.00002970709,0.000007804723,0.000007871835,0.0004803571,0.000009354671,0.000778812],"genre_scores_gemma":[0.997394,0.0004881622,0.0004773471,0.00004236559,0.00002067027,0.00002464211,0.0007321772,0.00000457798,0.0008159471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001467966,"threshold_uncertainty_score":0.004910886,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2316310820","doi":"10.1038/sj.gene.6363712","title":"Genetic control of susceptibility to infection with Mycobacterium tuberculosis in mice","year":2000,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; Medical Research Council; Howard Hughes Medical Institute","keywords":"Biology; Quantitative trait locus; Locus (genetics); Tuberculosis; Mycobacterium tuberculosis; Allele; Genetics; Genetic linkage; Phenotype; Immune system; Chromosome; Immunology; Candidate gene; Disease; Gene; Pathology","authors":[{"name":"L-M Mitsos","is_ca":true},{"name":"L R Cardon","is_ca":false},{"name":"A. Fortin","is_ca":true},{"name":"Lucy Ryan","is_ca":false},{"name":"Ronald LaCourse","is_ca":false},{"name":"RJ North","is_ca":false},{"name":"Philippe Gros","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01014508395267788,"gpt":0.2557723076959667,"spread":0.2456272237432888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005069949,0.001296946,0.0006462467,0.003002021,0.0005212628,0.0009238885,0.0009936213,0.001715473,0.002864511],"category_scores_gemma":[0.0006333243,0.0007588302,0.0006711768,0.0005706621,0.001608839,0.0004778368,0.0007143329,0.00218969,0.0006310405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008395871,"about_ca_system_score_gemma":0.0003956474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008219167,"about_ca_topic_score_gemma":0.001017891,"domain_scores_codex":[0.9988242,0.0002686785,0.000100667,0.0002765062,0.0002180168,0.0003119844],"domain_scores_gemma":[0.9977661,0.0004120987,0.0009500528,0.0002385827,0.00007580121,0.0005574626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008309118,0.0001694355,0.0002728381,0.00002002444,0.00001245688,0.00009955785,0.00002735829,0.00009169197,0.997587,0.0003129112,0.00003811508,0.0005377468],"study_design_scores_gemma":[0.0004136881,0.001224793,0.01126295,0.00003963397,0.0001356547,0.001178014,0.0001786659,0.002728863,0.9801612,0.0006912449,0.001935333,0.00004990242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994119,0.0009164975,0.002180197,0.0003340841,0.00006153181,0.0000678564,0.0005731369,0.0003063851,0.001441289],"genre_scores_gemma":[0.9949082,0.0005374765,0.001544615,0.0001191708,0.00003497802,0.00007834499,0.0002963801,0.0001358468,0.00234504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003002021,"threshold_uncertainty_score":0.009582758,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006166288","doi":"10.1038/sj.gene.6363924","title":"Genetic regulation of host responses to Salmonella infection in mice","year":2002,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Salmonella; Congenic; Genetics; Gene; Host (biology); Mutagenesis; Phenotype; Pathogen; Salmonella infection; Host adaptation; Quantitative trait locus; Bacteria; Mutant; Genome","authors":[{"name":"M-F Roy","is_ca":true},{"name":"Danielle Malo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03933985691402883,"gpt":0.2425317411310094,"spread":0.2031918842169806,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003842661,0.001093527,0.000533875,0.002160999,0.0003287049,0.000690428,0.0007388776,0.001073277,0.002084599],"category_scores_gemma":[0.000374251,0.0006395449,0.0006915986,0.0003950365,0.001318734,0.000373622,0.000467298,0.00190414,0.0005353193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009335161,"about_ca_system_score_gemma":0.0003455491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008207564,"about_ca_topic_score_gemma":0.00117706,"domain_scores_codex":[0.9992045,0.0001691692,0.0000468726,0.0002026781,0.0001190712,0.0002577148],"domain_scores_gemma":[0.9988204,0.0001988567,0.0004578806,0.0001254891,0.00005920382,0.0003381908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001067015,0.0001456629,0.00030923,0.00001821386,0.000007841532,0.00006383227,0.00002154147,0.0001028153,0.9974518,0.0002391017,0.00004041951,0.0005323375],"study_design_scores_gemma":[0.0001891148,0.001003562,0.007816624,0.00001837503,0.00005738647,0.0002616995,0.00008766102,0.001664632,0.9872459,0.0003110919,0.001321982,0.00002192975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948773,0.0009270697,0.001529133,0.0002866018,0.00004843574,0.00004181833,0.000601795,0.0002633625,0.001424547],"genre_scores_gemma":[0.9934487,0.0005639272,0.00141188,0.0001606311,0.00002794323,0.0001000862,0.0004514198,0.0001197156,0.003715729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002160999,"threshold_uncertainty_score":0.006973743,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159504684","doi":"10.1038/gene.2014.6","title":"MHC associations with clinical and autoantibody manifestations in European SLE","year":2014,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"Systemic Lupus Erythematosus Research","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Heart Institute; Université de Montréal","funders":"National Center for Research Resources; National Institute of Dental and Craniofacial Research; Instituto de Salud Carlos III; University of California, San Francisco; National Institutes of Health; National Institute of Mental Health; Vetenskapsrådet; European Science Foundation; National Center for Advancing Translational Sciences; National Human Genome Research Institute; Wellcome Trust; Lupus Research Alliance; Rheumatology Research Foundation; U.S. Department of Defense; European Commission; University of Pittsburgh; National Institute of General Medical Sciences; Massachusetts General Hospital; U.S. Department of Veterans Affairs; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; Versus Arthritis","keywords":"Autoantibody; Immunology; Major histocompatibility complex; Biology; Human leukocyte antigen; Allele; Phenotype; Single-nucleotide polymorphism; Antibody; Autoimmunity; Genotype; Genetics; Antigen; Gene","authors":[{"name":"David Morris","is_ca":false},{"name":"Maria Michelle Fernando","is_ca":false},{"name":"Kimberly E. Taylor","is_ca":false},{"name":"Sharon A. Chung","is_ca":false},{"name":"Joanne Nititham","is_ca":false},{"name":"Marta E. Alarcón‐Riquelme","is_ca":false},{"name":"Lisa F. Barcellos","is_ca":false},{"name":"Timothy W. Behrens","is_ca":false},{"name":"Chris Cotsapas","is_ca":false},{"name":"Patrick M. Gaffney","is_ca":false},{"name":"Robert Graham","is_ca":false},{"name":"Bernardo A. Pons‐Estel","is_ca":false},{"name":"Peter K. Gregersen","is_ca":false},{"name":"John B. Harley","is_ca":false},{"name":"Stephen L. Hauser","is_ca":false},{"name":"Gary Hom","is_ca":false},{"name":"Carl D. Langefeld","is_ca":false},{"name":"Janelle A. Noble","is_ca":false},{"name":"John D. Rioux","is_ca":true},{"name":"Michael F. Seldin","is_ca":false},{"name":"Timothy J. Vyse","is_ca":false},{"name":"Lindsey A. Criswell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1083849457589381,"gpt":0.4275679713800424,"spread":0.3191830256211042,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001033321,0.0006113913,0.002053879,0.002913677,0.0001345094,0.000697937,0.0006579951,0.000815833,0.001837208],"category_scores_gemma":[0.001475439,0.0002362851,0.00106042,0.003757503,0.0002884436,0.0005610459,0.0004795164,0.0005356707,0.0002417635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004031355,"about_ca_system_score_gemma":0.0009535489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00130145,"about_ca_topic_score_gemma":0.002054618,"domain_scores_codex":[0.9996543,0.00009533982,0.00008457215,0.00007282598,0.00007483865,0.00001812222],"domain_scores_gemma":[0.9992808,0.0004090554,0.0001756045,0.00001539223,0.00008434534,0.0000349143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004704556,0.00007258702,0.006152505,0.07852836,0.003173234,0.0005206459,0.00009910481,0.0004454168,0.0007832277,0.001051603,0.009615801,0.899087],"study_design_scores_gemma":[0.0004990424,0.0009759382,0.1225467,0.1091654,0.03248241,0.01470866,0.0004846032,0.0006854201,0.001600447,0.005515086,0.7111623,0.0001739922],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002354801,0.9995506,0.00002217133,0.00006471566,0.00002192011,0.000001253788,0.00001106568,9.339794e-7,0.0000917498],"genre_scores_gemma":[0.002806786,0.9968717,0.00007671767,0.00007927586,0.00006566674,0.000003842495,0.00003009988,5.144777e-7,0.00006554373],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002913677,"threshold_uncertainty_score":0.006146014,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046079073","doi":"10.1038/gene.2011.89","title":"Association of primary biliary cirrhosis with variants in the CLEC16A, SOCS1, SPIB and SIAE immunomodulatory genes","year":2012,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hôpital Saint-Luc; University of Calgary; Université de Montréal; University of Alberta; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Toronto Western Hospital","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; American Gastroenterological Association; Canadian Institutes of Health Research; Canada Research Chairs; Health Canada; National Institutes of Health","keywords":"Biology; Single-nucleotide polymorphism; Locus (genetics); Genetics; SNP; Gene; Genotype","authors":[{"name":"Gideon M. Hirschfield","is_ca":true},{"name":"Gang Xie","is_ca":true},{"name":"E. Lu","is_ca":false},{"name":"Ye Sun","is_ca":true},{"name":"B D Juran","is_ca":false},{"name":"Vasant Chellappa","is_ca":false},{"name":"Catalina Coltescu","is_ca":true},{"name":"Andrew L. Mason","is_ca":true},{"name":"Piotr Milkiewicz","is_ca":false},{"name":"R. Myers","is_ca":true},{"name":"J A Odin","is_ca":false},{"name":"VA Luketic","is_ca":false},{"name":"Bruce R. Bacon","is_ca":false},{"name":"Henry C. Bodenheimer","is_ca":false},{"name":"Valentina Liakina","is_ca":false},{"name":"Catherine Vincent","is_ca":true},{"name":"Cynthia Levy","is_ca":false},{"name":"Shiv Pillai","is_ca":false},{"name":"K.N. Lazaridis","is_ca":false},{"name":"C. I. Amos","is_ca":false},{"name":"K A Siminovitch","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01433636467329138,"gpt":0.2259294008532352,"spread":0.2115930361799438,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002731515,0.0004487453,0.0003665055,0.0005442286,0.0004155835,0.0003135952,0.0001878449,0.0006629846,0.005645082],"category_scores_gemma":[0.001203719,0.0001939532,0.0005130747,0.0006538146,0.0003844416,0.0001670402,0.0002301674,0.0005178511,0.0002661422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001999723,"about_ca_system_score_gemma":0.000208504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001865821,"about_ca_topic_score_gemma":0.001945213,"domain_scores_codex":[0.9997048,0.00007917521,0.00003200731,0.00007374129,0.00004552993,0.00006472132],"domain_scores_gemma":[0.9989551,0.0003183986,0.0003647823,0.00007637603,0.00008117505,0.0002041204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002619546,0.00008216225,0.9689099,0.00006451425,0.0003465295,0.002399915,0.0001154271,0.0002233184,0.02077547,0.000207508,0.0003294714,0.003926327],"study_design_scores_gemma":[0.00003932331,0.0001841993,0.9923702,0.000009118175,0.0001404385,0.005117614,0.00008032397,0.0005669722,0.0009979828,0.0001942033,0.0002913179,0.000008144572],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986429,0.000287071,0.0001658914,0.000101248,0.00001627872,0.000004007306,0.0001879669,0.000008113539,0.0005865055],"genre_scores_gemma":[0.9995804,0.00003654303,0.00008365157,0.00001472768,0.0000111189,0.000001775629,0.00006191306,0.000002038251,0.00020782],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005645082,"threshold_uncertainty_score":0.01888472,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2040751901","doi":"10.1038/gene.2012.63","title":"The TGF-β-Smad3 pathway inhibits CD28-dependent cell growth and proliferation of CD4 T cells","year":2013,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Institute for Research in Immunology and Cancer; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canada Research Chairs","keywords":"Biology; CD28; Cell biology; T cell; Transforming growth factor; Signal transduction; Cell growth; Stimulation; Cell; PI3K/AKT/mTOR pathway; Immunology; Immune system; Endocrinology; Biochemistry","authors":[{"name":"M.F. Giroux","is_ca":true},{"name":"Geneviève Boucher","is_ca":true},{"name":"J.-R. Landry","is_ca":true},{"name":"M-P Hardy","is_ca":true},{"name":"Sébastien Lemieux","is_ca":true},{"name":"Russell G. Jones","is_ca":true},{"name":"Brian T. Wilhelm","is_ca":true},{"name":"Claude Perreault","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005442833336410796,"gpt":0.1905686747694458,"spread":0.185125841433035,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001616777,0.00037401,0.0002217252,0.0003197037,0.0002289841,0.0002753484,0.0002068429,0.0002327183,0.003047561],"category_scores_gemma":[0.0001330095,0.0001637986,0.0003140108,0.0001324192,0.0002065016,0.0001288108,0.0002098245,0.001238712,0.0006952838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002403168,"about_ca_system_score_gemma":0.0005139626,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007240881,"about_ca_topic_score_gemma":0.001754169,"domain_scores_codex":[0.9997628,0.00005215787,0.00001583865,0.00002278613,0.00005422495,0.00009218435],"domain_scores_gemma":[0.9998913,0.00002833603,0.00001494995,0.00001363345,0.00001042807,0.00004141282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004705162,0.0001204392,0.000165014,0.00004904963,0.000008484377,0.00004744053,0.00001384931,0.0001372927,0.9963086,0.0001431366,0.0001553529,0.002380776],"study_design_scores_gemma":[0.00007894201,0.0002939198,0.001999466,0.00000608277,0.00001437512,0.0001087571,0.0000273284,0.001098702,0.9937629,0.00007945728,0.002527587,0.000002499844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917606,0.001453044,0.00183913,0.0002460462,0.0001012188,0.00003612702,0.0002697036,0.00008916353,0.004204941],"genre_scores_gemma":[0.9928271,0.0007913609,0.001378995,0.00009909879,0.00003669412,0.00004541082,0.0004268534,0.00002195095,0.004372532],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003047561,"threshold_uncertainty_score":0.01019508,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977083134","doi":"10.1038/gene.2012.17","title":"Classical HLA-DRB1 and DPB1 alleles account for HLA associations with primary biliary cirrhosis","year":2012,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Allele; Genetics; Human leukocyte antigen; Primary biliary cirrhosis; Single-nucleotide polymorphism; HLA-DRB1; SNP; Gene; Genetic association; Linkage disequilibrium; Haplotype; Immunology; Antigen; Genotype","authors":[{"name":"Pietro Invernizzi","is_ca":false},{"name":"Michael R. Ransom","is_ca":false},{"name":"Soumya Raychaudhuri","is_ca":false},{"name":"Roman Kosoy","is_ca":false},{"name":"Ana Lleò","is_ca":false},{"name":"Russell Shigeta","is_ca":false},{"name":"André Franke","is_ca":false},{"name":"Fabrizio Bossa","is_ca":false},{"name":"C. I. Amos","is_ca":false},{"name":"Peter K. Gregersen","is_ca":false},{"name":"Katherine A. Siminovitch","is_ca":true},{"name":"Daniele Cusi","is_ca":false},{"name":"Paul I. W. de Bakker","is_ca":false},{"name":"Mauro Podda","is_ca":false},{"name":"M. Eric Gershwin","is_ca":false},{"name":"Michael F. Seldin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02507706843827436,"gpt":0.263016730504094,"spread":0.2379396620658197,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006956096,0.0003821451,0.0005095634,0.0008935317,0.0003609181,0.0006716541,0.0004847996,0.0005367443,0.006522255],"category_scores_gemma":[0.002778161,0.0002950781,0.0005765395,0.001327094,0.0004218456,0.0004788602,0.0005092446,0.0006130417,0.0005069567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002397961,"about_ca_system_score_gemma":0.0002067544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007762875,"about_ca_topic_score_gemma":0.0006168029,"domain_scores_codex":[0.9994325,0.0002372573,0.00005948121,0.0000897149,0.00006904193,0.0001120467],"domain_scores_gemma":[0.9984562,0.0006342894,0.0003996217,0.0001828632,0.0001003146,0.0002267067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007609391,0.00004433174,0.9779478,0.00004895666,0.000357302,0.001005411,0.00007439237,0.0001473395,0.006900224,0.0004408516,0.0003469043,0.01192551],"study_design_scores_gemma":[0.00007089867,0.00009745835,0.9888358,0.00002178902,0.0003915611,0.006002089,0.000178016,0.001324805,0.0009175382,0.001312756,0.0008366487,0.00001066066],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967829,0.001323036,0.0005239735,0.0002056814,0.0000209636,0.000005095971,0.0001079767,0.00001264363,0.001017887],"genre_scores_gemma":[0.9993322,0.0001534085,0.0002135451,0.00003010531,0.00003476857,0.000002147998,0.00005700825,0.00000611216,0.0001705437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006522255,"threshold_uncertainty_score":0.02181917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1983280439","doi":"10.1038/sj.gene.6364453","title":"Association of LY9 in UK and Canadian SLE families","year":2008,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Arthritis Research Centre of Canada; McGill University; University of Toronto; University Health Network; Montreal Heart Institute; Toronto Western Hospital; Hospital for Sick Children; McGill University and Génome Québec Innovation Centre; Ontario Institute for Cancer Research","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; Broad Institute; Wellcome Trust","keywords":"Biology; Genetics; Locus (genetics); Genome-wide association study; CD8; Genetic association; Gene; Linkage disequilibrium; Allele; Immune system; Immunology; Haplotype; Genotype; Single-nucleotide polymorphism","authors":[{"name":"Deborah S. Cunninghame Graham","is_ca":false},{"name":"Timothy J. Vyse","is_ca":false},{"name":"Paul R. Fortin","is_ca":true},{"name":"Alexandre Montpetit","is_ca":true},{"name":"Y-c Cai","is_ca":true},{"name":"Sang Yup Lim","is_ca":true},{"name":"Tamara McKenzie","is_ca":true},{"name":"Lisa Farwell","is_ca":false},{"name":"Benjamin Rhodes","is_ca":false},{"name":"Lauren Chad","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"Arlene H. Sharpe","is_ca":false},{"name":"Cox Terhorst","is_ca":false},{"name":"Celia M.T. Greenwood","is_ca":true},{"name":"Joan Wither","is_ca":true},{"name":"John D. Rioux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01131427409702918,"gpt":0.1973646611718064,"spread":0.1860503870747772,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006508459,0.0005807973,0.0006501715,0.003578054,0.003958595,0.001830803,0.001522468,0.000965072,0.01374343],"category_scores_gemma":[0.004393114,0.0004608973,0.0006067849,0.005289065,0.001145106,0.0004399522,0.001495406,0.0009771353,0.0007907795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008899755,"about_ca_system_score_gemma":0.008183849,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8736829,"about_ca_topic_score_gemma":0.8797283,"domain_scores_codex":[0.9977525,0.0002392456,0.0001416643,0.0003443444,0.0005192188,0.001003147],"domain_scores_gemma":[0.9962068,0.0005165485,0.0009146876,0.0001406743,0.001208694,0.001012563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001152738,0.00004973866,0.9622197,0.00009549216,0.0001114962,0.005585467,0.007337891,0.000171838,0.004332483,0.001439369,0.002757813,0.01474594],"study_design_scores_gemma":[0.00003013404,0.00006417679,0.9838955,0.0001236973,0.00005990778,0.005463844,0.004545359,0.0001419303,0.0003295421,0.0001417074,0.005164524,0.00003987933],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890146,0.00119825,0.0001627578,0.0005675536,0.00003309859,0.00002017465,0.00177251,0.00001892805,0.007211995],"genre_scores_gemma":[0.9961901,0.0004882483,0.0001711607,0.000118117,0.00001380335,0.00001141997,0.0004962765,0.00001736391,0.002493563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1263171,"threshold_uncertainty_score":0.2541221,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039479373","doi":"10.1038/sj.gene.6363841","title":"Complex genetic control of susceptibility to malaria in mice","year":2002,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Plasmodium chabaudi; Biology; Congenic; Malaria; Genetics; Inbred strain; Gene; Immunology; Virology; Plasmodium falciparum; Parasitemia","authors":[{"name":"A. Fortin","is_ca":true},{"name":"Mary M. Stevenson","is_ca":true},{"name":"Philippe Gros","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06994734510352914,"gpt":0.3415571452068439,"spread":0.2716098001033148,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003988778,0.0009227043,0.0009642555,0.0009219561,0.0001237921,0.0005319493,0.0007139895,0.0007162587,0.0009597108],"category_scores_gemma":[0.0003711207,0.000203642,0.0002045785,0.000759215,0.000504976,0.0005288911,0.0003261567,0.001162872,0.000505831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00046175,"about_ca_system_score_gemma":0.0004688399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005197134,"about_ca_topic_score_gemma":0.0008985735,"domain_scores_codex":[0.9998883,0.00001677722,0.00001805724,0.00002791995,0.00003815153,0.00001080249],"domain_scores_gemma":[0.9998091,0.00008555179,0.00004295104,0.00001081713,0.00002991713,0.00002175119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005035925,0.0001057958,0.0006038461,0.00702279,0.0001278462,0.0009834948,0.0000761292,0.000988083,0.08623321,0.01077306,0.019192,0.8733902],"study_design_scores_gemma":[0.0001544245,0.0002346835,0.003571121,0.001427821,0.0003604816,0.003358202,0.00008143144,0.000276969,0.02438964,0.0075294,0.9585705,0.00004529426],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001640914,0.9940749,0.001342825,0.0006103219,0.0004242481,0.000009723893,0.00004723955,0.00003526142,0.001814517],"genre_scores_gemma":[0.005513953,0.991767,0.0009121075,0.0003294219,0.0002404359,0.00001302639,0.00005727832,0.000004388559,0.001162521],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.0009642555,"threshold_uncertainty_score":0.003350317,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006752519","doi":"10.1038/sj.gene.6364390","title":"HLA-DRB1*04 and DRB1*10 are associated with resistance and susceptibility, respectively, in Brazilian and Vietnamese leprosy patients","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Leprosy Research and Treatment","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Leprosy; Biology; Mycobacterium leprae; Human leukocyte antigen; Allele; Vietnamese; Immunology; Genetics; Locus (genetics); Population; Genetic predisposition; Disease; Antigen; Gene; Medicine; Internal medicine; Environmental health","authors":[{"name":"Patrícia Rosa Vanderborght","is_ca":false},{"name":"Antônio Guilherme Pacheco","is_ca":false},{"name":"M. E. Moraes","is_ca":false},{"name":"Guillemette Antoni","is_ca":false},{"name":"Matilde Romero","is_ca":false},{"name":"A Verville","is_ca":true},{"name":"Vu Hong Thai","is_ca":true},{"name":"Nguyễn Thu Hương","is_ca":false},{"name":"Nguyen Ngoc Ba","is_ca":false},{"name":"Erwin Schurr","is_ca":true},{"name":"Euzenir Nunes Sarno","is_ca":true},{"name":"Milton Ozório Moraes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01515026523191493,"gpt":0.2801455430609634,"spread":0.2649952778290485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003794717,0.0004337235,0.00039864,0.0006863876,0.0005848935,0.0004685956,0.000252106,0.0003950873,0.0023609],"category_scores_gemma":[0.002234282,0.0003509443,0.0003043355,0.0006847846,0.0004164866,0.0001797657,0.0002338014,0.0004989143,0.0001997699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003513856,"about_ca_system_score_gemma":0.0002839973,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01374996,"about_ca_topic_score_gemma":0.01199247,"domain_scores_codex":[0.9997018,0.0001121071,0.00002946552,0.00005370951,0.00003103518,0.00007198425],"domain_scores_gemma":[0.9989768,0.0002931886,0.0003759442,0.00005524533,0.00007458066,0.0002243104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00070539,0.0001491117,0.9871317,0.00003480923,0.0001038199,0.001364685,0.001823808,0.00005171121,0.00506829,0.0001226708,0.000122635,0.003321335],"study_design_scores_gemma":[0.00005410859,0.0002325532,0.994404,0.00001995426,0.00009324381,0.003430412,0.0009633952,0.0001633832,0.0002102456,0.00009776938,0.0003211552,0.000009810987],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995702,0.0001180393,0.00001695952,0.00003609908,0.000001500806,0.000002270938,0.00002151059,9.253692e-7,0.0002324584],"genre_scores_gemma":[0.999685,0.00008619803,0.00003178939,0.00002447062,0.000003197027,0.000003094894,0.0000349685,0.000001469486,0.0001298283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01374996,"threshold_uncertainty_score":0.02733988,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015786574","doi":"10.1038/gene.2011.30","title":"Non-HLA genes modulate the risk of rheumatoid arthritis associated with HLA-DRB1 in a susceptible North American Native population","year":2011,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network; University of Winnipeg; Mount Sinai Hospital; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"PTPN22; Biology; Single-nucleotide polymorphism; Odds ratio; Immunology; Population; Allele; Genetics; HLA-DRB1; Human leukocyte antigen; Rheumatoid arthritis; Genotype; Internal medicine; Gene; Medicine; Antigen","authors":[{"name":"Hani El‐Gabalawy","is_ca":true},{"name":"D. B. Robinson","is_ca":true},{"name":"Nina Daha","is_ca":false},{"name":"Kiem Oen","is_ca":true},{"name":"Irene Smolik","is_ca":true},{"name":"Brenda Elias","is_ca":true},{"name":"Donna Hart","is_ca":true},{"name":"Çharles N. Bernstein","is_ca":true},{"name":"Yu Sun","is_ca":true},{"name":"Yan Lu","is_ca":true},{"name":"Jeanine J. Houwing‐Duistermaat","is_ca":false},{"name":"Katherine A. Siminovitch","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0115696834046194,"gpt":0.2024503382107495,"spread":0.1908806548061301,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003403848,0.0003311918,0.0002522209,0.0005098733,0.000833648,0.000487988,0.0002646238,0.0003443788,0.001733206],"category_scores_gemma":[0.0007576506,0.0002587987,0.0001511728,0.0004311927,0.0005586993,0.0002648687,0.0002795729,0.0004707438,0.0002149429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001613826,"about_ca_system_score_gemma":0.0002226818,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01195006,"about_ca_topic_score_gemma":0.00993263,"domain_scores_codex":[0.9996964,0.0001419127,0.00001224731,0.00005998082,0.0000326954,0.00005682001],"domain_scores_gemma":[0.9995432,0.0001283854,0.00009648881,0.0000398777,0.00004253834,0.0001495593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007951478,0.0005301845,0.9749984,0.00001528813,0.0001055117,0.0009662448,0.002839222,0.0001167075,0.01533789,0.0002210383,0.000147892,0.003926549],"study_design_scores_gemma":[0.00001629051,0.0002910621,0.9967129,0.000004335815,0.0000447308,0.0006497871,0.001410426,0.000295983,0.0002520117,0.0001188256,0.0001958283,0.000007687319],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999692,0.00002689626,0.00003399272,0.00001468489,0.000002202557,0.000001339729,0.00001013207,9.976696e-7,0.0002178673],"genre_scores_gemma":[0.9994161,0.00004196131,0.00005400141,0.00002240202,0.000008048776,0.000002337111,0.00001776301,0.000001745398,0.0004355283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9880499,"threshold_uncertainty_score":0.02376097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1978978834","doi":"10.1038/gene.2011.2","title":"FBXO11, a regulator of the TGFβ pathway, is associated with severe otitis media in Western Australian children","year":2011,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Ear Surgery and Otitis Media","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"DNA Genotek","keywords":"Biology; Single-nucleotide polymorphism; Genetics; Phenotype; Otitis; Cohort; Candidate gene; Gene; Genetic association; Internal medicine; Medicine; Genotype","authors":[{"name":"Marie S. Rye","is_ca":false},{"name":"Selma P. Wiertsema","is_ca":false},{"name":"Elizabeth S. H. Scaman","is_ca":false},{"name":"Joyce Oommen","is_ca":false},{"name":"Weiwei Sun","is_ca":false},{"name":"Richard W. Francis","is_ca":false},{"name":"Craig E. Pennell","is_ca":false},{"name":"David Burgner","is_ca":false},{"name":"Peter Richmond","is_ca":false},{"name":"Shyan Vijayasekaran","is_ca":false},{"name":"Harvey Coates","is_ca":false},{"name":"Steve D. M. Brown","is_ca":false},{"name":"Jenefer M. Blackwell","is_ca":false},{"name":"Scott Jamieson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02728142435613491,"gpt":0.2140824674603273,"spread":0.1868010431041924,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003569929,0.0005709532,0.000451114,0.001296686,0.0009083409,0.0006869756,0.0005668852,0.0007586133,0.001778295],"category_scores_gemma":[0.001661698,0.000453542,0.0004646599,0.001514428,0.001123613,0.0003500225,0.0007630748,0.0007060546,0.0001613626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004580059,"about_ca_system_score_gemma":0.000546257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04037346,"about_ca_topic_score_gemma":0.03116557,"domain_scores_codex":[0.9993359,0.0001220457,0.00008325225,0.0001457724,0.0001892922,0.0001235866],"domain_scores_gemma":[0.9986312,0.0002605697,0.0007320197,0.00005074347,0.0001347386,0.0001907282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002254664,0.0000795847,0.9737801,0.00009248289,0.00009458562,0.008559708,0.001820683,0.0001242238,0.01087066,0.0002001916,0.0002315599,0.003920796],"study_design_scores_gemma":[0.000003968508,0.00006243576,0.9932435,0.0000225098,0.00004440704,0.00517025,0.0007173815,0.0001324837,0.0003208538,0.00004390634,0.0002319779,0.000006315206],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991493,0.0001376378,0.0001079867,0.00005904427,0.00000446106,0.000004284742,0.00005942677,0.000003007975,0.0004747167],"genre_scores_gemma":[0.9991737,0.0001473881,0.0001911607,0.00003166453,0.000006923221,0.000004935088,0.00005662504,0.000003236874,0.0003844263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04037346,"threshold_uncertainty_score":0.08027697,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963804886","doi":"10.1038/sj.gene.6364157","title":"Differential cytokine genotype frequencies among Canadian Aboriginal and Caucasian populations","year":2004,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Genotype; Genetics; Differential (mechanical device); Allele frequency; Evolutionary biology; Gene","authors":[{"name":"Linda Larcombe","is_ca":true},{"name":"Julia D. Rempel","is_ca":true},{"name":"Iga Dembinski","is_ca":true},{"name":"Kathryn Tinckam","is_ca":true},{"name":"Claudio Rigatto","is_ca":true},{"name":"Peter Nickerson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01265751613572882,"gpt":0.2384855621940684,"spread":0.2258280460583395,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004726857,0.0003599329,0.0004873145,0.001933043,0.003138893,0.001141771,0.0006051773,0.000550123,0.004069146],"category_scores_gemma":[0.001770855,0.000293623,0.0003666486,0.002264949,0.0009762415,0.0002071036,0.0004627339,0.0004447552,0.0003352836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003242656,"about_ca_system_score_gemma":0.003349037,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8713286,"about_ca_topic_score_gemma":0.8774746,"domain_scores_codex":[0.9991511,0.000100902,0.0000532205,0.0001803986,0.0001891212,0.0003251587],"domain_scores_gemma":[0.9993074,0.0001014202,0.00009092056,0.00003788694,0.0002911395,0.0001713031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001135388,0.00007798215,0.9609953,0.00006168684,0.0001406415,0.0007529066,0.01377734,0.0001025686,0.01161295,0.0004189196,0.0006058126,0.01031849],"study_design_scores_gemma":[0.00002207934,0.0001049199,0.9919635,0.00001975189,0.00006185063,0.0005001688,0.005693374,0.0001283302,0.0004192815,0.0001048934,0.0009617423,0.00002014227],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985331,0.0001548125,0.00007116423,0.00006287952,0.000006723948,0.00000854918,0.0002847017,0.000003613818,0.0008744226],"genre_scores_gemma":[0.9983683,0.0001671179,0.0001375456,0.00005242309,0.000006920082,0.00001041991,0.0001625092,0.000006470175,0.001088271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1286714,"threshold_uncertainty_score":0.2588583,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038692332","doi":"10.1038/sj.gene.6363850","title":"Identification of genetic loci controlling bacterial clearance in experimental Salmonella enteritidis infection: an unexpected role of Nramp1 (Slc11a1) in the persistence of infection in mice","year":2002,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Salmonella enteritidis; Persistence (discontinuity); Identification (biology); Salmonella infection; Salmonella; Genetics; Microbiology; Bacteria; Ecology","authors":[{"name":"Judith Caron","is_ca":true},{"name":"Jorge Loredo‐Osti","is_ca":true},{"name":"L. Laroche","is_ca":true},{"name":"Emil Skamene","is_ca":true},{"name":"Kenneth Morgan","is_ca":true},{"name":"Danielle Malo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02977415786264322,"gpt":0.2381521372675969,"spread":0.2083779794049537,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003593809,0.0006432066,0.0004412306,0.0008254644,0.0002395167,0.0005696095,0.0004180787,0.0007408243,0.00135882],"category_scores_gemma":[0.0005023592,0.0004627381,0.0004186788,0.0002243716,0.00115514,0.0003509508,0.0003671413,0.001725059,0.0003278327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005042335,"about_ca_system_score_gemma":0.0003330971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000484453,"about_ca_topic_score_gemma":0.0008018956,"domain_scores_codex":[0.9994172,0.00009839581,0.00005255289,0.0001784401,0.0001009903,0.0001523925],"domain_scores_gemma":[0.9985281,0.0002324328,0.0006403979,0.0001507617,0.00007726018,0.0003709935],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003321982,0.00004052641,0.0003668022,0.00001594723,0.000004575333,0.00005461961,0.00001864223,0.00005109698,0.9983975,0.000120466,0.00001583552,0.0005818215],"study_design_scores_gemma":[0.0001135238,0.0006289121,0.02315926,0.00002624212,0.00005971019,0.0008482164,0.000109546,0.0016104,0.9723325,0.0002671797,0.0008226489,0.0000219184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950884,0.0004723183,0.00334977,0.0002189838,0.00002151331,0.00001503072,0.0003298227,0.0001225321,0.0003817454],"genre_scores_gemma":[0.9951374,0.0002651026,0.002427069,0.00009891865,0.00001298762,0.00004476021,0.000347499,0.0001039736,0.001562434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00135882,"threshold_uncertainty_score":0.004545689,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063028960","doi":"10.1038/sj.gene.6364254","title":"Genetic control of suceptibility to Candida albicans in susceptible A/J and resistant C57BL/6J mice","year":2005,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Biotechnology Research Institute; William Osler Health System","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; McGill University; Genomic Health","keywords":"Biology; Candida albicans; Congenic; Corpus albicans; Population; Inbred strain; Gene; Microbiology; Immunology; Genetics","authors":[{"name":"Ashleigh R. Tuite","is_ca":true},{"name":"Miria Elias","is_ca":true},{"name":"Serge Picard","is_ca":true},{"name":"Alaka Mullick","is_ca":true},{"name":"Philippe Gros","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01107871019743706,"gpt":0.2612125439745248,"spread":0.2501338337770878,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007768343,0.001880475,0.001002771,0.005444393,0.001047285,0.001452836,0.00167767,0.002300597,0.005869805],"category_scores_gemma":[0.0007950163,0.001007974,0.001205641,0.001038216,0.001984157,0.0008925071,0.0008468598,0.004148532,0.001320643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009637484,"about_ca_system_score_gemma":0.0006101688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00232901,"about_ca_topic_score_gemma":0.003665624,"domain_scores_codex":[0.9977143,0.0004048237,0.0002984362,0.000533525,0.0004966149,0.000552461],"domain_scores_gemma":[0.9959999,0.0005276082,0.001516625,0.0003947954,0.0002722812,0.001288892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008805919,0.000306261,0.0001467704,0.00002216424,0.00001190384,0.0001334834,0.00004902036,0.00003565253,0.9976721,0.0002763715,0.00005767907,0.0004079776],"study_design_scores_gemma":[0.0006161495,0.001789795,0.01502955,0.00005093912,0.0001872274,0.00152824,0.0004139647,0.001952681,0.9755585,0.0003924884,0.002385241,0.00009529513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936563,0.0005586522,0.001603943,0.0002401775,0.0001065938,0.0001143805,0.001495869,0.0002482692,0.001975816],"genre_scores_gemma":[0.9821581,0.0007340055,0.004099399,0.0003033597,0.0001044993,0.0002001177,0.001103981,0.0004368851,0.01085958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005869805,"threshold_uncertainty_score":0.01963645,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151713791","doi":"10.1038/sj.gene.6364154","title":"Direct sequence comparison of two divergent class I MHC natural killer cell receptor haplotypes","year":2005,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill Genome Centre; Institut de Readaptation Gingras Lindsay de Montreal","funders":"National Cancer Institute","keywords":"Biology; Pseudogene; Genetics; Gene; Haplotype; Major histocompatibility complex; MHC class I; Phenotype; Natural killer cell; Phylogenetic tree; Gene cluster; Gene duplication; Genome; Genotype; Cytotoxic T cell","authors":[{"name":"Andrew P. Makrigiannis","is_ca":true},{"name":"Devika Patel","is_ca":false},{"name":"M-L Goulet","is_ca":false},{"name":"Ken Dewar","is_ca":true},{"name":"Stephen K. Anderson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02472287749129974,"gpt":0.276671942717222,"spread":0.2519490652259222,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001753853,0.0003175239,0.0004427804,0.0005742211,0.0003047013,0.0005642075,0.0004759771,0.0004758003,0.003680698],"category_scores_gemma":[0.0005390861,0.0001985171,0.0004869885,0.0003476771,0.0003129743,0.0001687657,0.0003415729,0.0007677532,0.00147066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002437791,"about_ca_system_score_gemma":0.0002361324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004679829,"about_ca_topic_score_gemma":0.0006190668,"domain_scores_codex":[0.9998307,0.00003262498,0.00001365566,0.00004402782,0.0000312154,0.00004764253],"domain_scores_gemma":[0.999324,0.0002822775,0.00009547297,0.00006023702,0.00008571677,0.000152358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006232724,0.00006294981,0.001045832,0.00006387799,0.00002517072,0.0003775599,0.0001092545,0.00005360394,0.9949462,0.0002258093,0.00005758047,0.002408956],"study_design_scores_gemma":[0.0005305017,0.002548958,0.1779306,0.0001300035,0.0007911341,0.01164413,0.001084354,0.002133226,0.7803331,0.0009855321,0.02181227,0.00007610747],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944862,0.0005037722,0.002163169,0.00005486817,0.00006075612,0.00003327498,0.0005015077,0.00001636285,0.002180194],"genre_scores_gemma":[0.992652,0.0003492429,0.002262002,0.0001331129,0.00003875879,0.00003048064,0.002653412,0.00002561335,0.001855323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003680698,"threshold_uncertainty_score":0.01231319,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062812959","doi":"10.1038/gene.2012.37","title":"Association between genetic variants in the HNF4A gene and childhood-onset Crohn’s disease","year":2012,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institutes of Health Research; Université de Sherbrooke; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Single-nucleotide polymorphism; Biology; Haplotype; Genetics; Locus (genetics); Genome-wide association study; SNP; Allele; Crohn's disease; Cohort; Genetic predisposition; Genotyping; Disease; Genotype; Gene; Internal medicine; Medicine","authors":[{"name":"Valérie Marcil","is_ca":true},{"name":"Daniel Sinnett","is_ca":true},{"name":"Ernest G. Seidman","is_ca":true},{"name":"François Boudreau","is_ca":true},{"name":"Daniel Ménard","is_ca":true},{"name":"Marie Lambert","is_ca":true},{"name":"Alain Bitton","is_ca":true},{"name":"Rocío Sánchez","is_ca":true},{"name":"Devendra Amre","is_ca":true},{"name":"Émile Lévy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01725684702587307,"gpt":0.2518851694116734,"spread":0.2346283223858004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004729759,0.0003583864,0.0003389302,0.0008388718,0.0004931093,0.0003889196,0.0002987119,0.0004548118,0.002100941],"category_scores_gemma":[0.002268066,0.0001922447,0.0005634653,0.0009596577,0.0005421395,0.0002124571,0.0002434486,0.0005377544,0.0000918681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004762899,"about_ca_system_score_gemma":0.000343956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01177154,"about_ca_topic_score_gemma":0.009629595,"domain_scores_codex":[0.9994994,0.0001663123,0.00005458887,0.0001042143,0.00007322137,0.0001021359],"domain_scores_gemma":[0.9983133,0.0006798211,0.0005205052,0.0001074342,0.0001390561,0.0002399218],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004191293,0.00003375601,0.9963278,0.00001398892,0.0001745709,0.000447879,0.00005708576,0.00004499666,0.001333489,0.00004317674,0.00005601869,0.001047997],"study_design_scores_gemma":[0.00001139777,0.00006229578,0.9982905,0.000005776236,0.00009199997,0.0008746729,0.00009941868,0.00007223295,0.0003144238,0.00002879076,0.0001462442,0.000002289574],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987807,0.0005647988,0.00005733239,0.000051649,0.000009503206,0.000001277334,0.0001146963,0.000002217821,0.0004178413],"genre_scores_gemma":[0.9995674,0.0001347374,0.00005348645,0.00001055336,0.000008547309,9.182408e-7,0.00008666173,0.000001259218,0.00013634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01177154,"threshold_uncertainty_score":0.02340603,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088268136","doi":"10.1038/gene.2013.1","title":"Pathway-based analysis of primary biliary cirrhosis genome-wide association studies","year":2013,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto Western Hospital; University of Toronto","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Genome-wide association study; Biology; Primary biliary cirrhosis; KEGG; Genetic association; Genetics; Hedgehog signaling pathway; Gene; Computational biology; Bioinformatics; Immunology; Single-nucleotide polymorphism; Transcriptome; Gene expression; Genotype","authors":[{"name":"Siddhartha Kar","is_ca":false},{"name":"Michael F. Seldin","is_ca":false},{"name":"W. Chen","is_ca":false},{"name":"E. Lu","is_ca":false},{"name":"Gideon M. Hirschfield","is_ca":false},{"name":"Pietro Invernizzi","is_ca":false},{"name":"Jenny Heathcote","is_ca":true},{"name":"Daniele Cusi","is_ca":false},{"name":"Piero Luigi Almasio","is_ca":false},{"name":"Domenico Alvaro","is_ca":false},{"name":"Pietro Andreoné","is_ca":false},{"name":"Angelo Andriulli","is_ca":false},{"name":"Cristina Barlassina","is_ca":false},{"name":"A. Benedetti","is_ca":false},{"name":"Francesca Bernuzzi","is_ca":false},{"name":"Ilaria Bianchi","is_ca":false},{"name":"Maria Consiglia Bragazzi","is_ca":false},{"name":"Maurizia Rossana Brunetto","is_ca":false},{"name":"Savino Bruno","is_ca":false},{"name":"Lisa Caliari","is_ca":false},{"name":"Giovanni Casella","is_ca":false},{"name":"B. Coco","is_ca":false},{"name":"Agostino Colli","is_ca":false},{"name":"Massimo Colombo","is_ca":false},{"name":"Sílvia Colombo","is_ca":false},{"name":"Carmela Cursaro","is_ca":false},{"name":"Lory Saveria Crocè","is_ca":false},{"name":"Andrea Crosignani","is_ca":false},{"name":"Francesco Donato","is_ca":false},{"name":"G. Elia","is_ca":false},{"name":"Luca Fabris","is_ca":false},{"name":"Annarosa Floreani","is_ca":false},{"name":"Andrea Galli","is_ca":false},{"name":"Ignazio Grattagliano","is_ca":false},{"name":"Roberta Lazzari","is_ca":false},{"name":"Ana Lleò","is_ca":false},{"name":"Fabio Salvatore Macaluso","is_ca":false},{"name":"Fabio Marra","is_ca":false},{"name":"Marco Marzioni","is_ca":false},{"name":"Elisabetta Mascia","is_ca":false},{"name":"Alberto Mattalia","is_ca":false},{"name":"R. Montanari","is_ca":false},{"name":"Lorenzo Morini","is_ca":false},{"name":"Filomena Morisco","is_ca":false},{"name":"Luigi Muratori","is_ca":false},{"name":"Paolo Muratori","is_ca":false},{"name":"Grazia Anna Niro","is_ca":false},{"name":"Mauro Podda","is_ca":false},{"name":"Piero Portincasa","is_ca":false},{"name":"Daniele Prati","is_ca":false},{"name":"Chiara Raggi","is_ca":false},{"name":"F. Rosina","is_ca":false},{"name":"Sonia Rossi","is_ca":false},{"name":"Ilaria Sogno","is_ca":false},{"name":"Giancarlo Spinzi","is_ca":false},{"name":"Mario Strazzabosco","is_ca":false},{"name":"Sonia Tarallo","is_ca":false},{"name":"Mirko Tarocchi","is_ca":false},{"name":"Claudio Tiribelli","is_ca":false},{"name":"Pierluigi Toniutto","is_ca":false},{"name":"Maria Cristina Vinci","is_ca":false},{"name":"Massimo Zuin","is_ca":false},{"name":"M. Eric Gershwin","is_ca":true},{"name":"Kathy Siminovitch","is_ca":false},{"name":"Christopher I. Amos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02525384781207561,"gpt":0.2512897260304648,"spread":0.2260358782183892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002451875,0.000547233,0.0008757501,0.002826917,0.0006726672,0.001298316,0.0005439011,0.0004301438,0.005270243],"category_scores_gemma":[0.004891947,0.0002320848,0.002666339,0.003842876,0.0002912587,0.0003376113,0.0009705931,0.0006797567,0.0004463173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003440844,"about_ca_system_score_gemma":0.001381374,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004651393,"about_ca_topic_score_gemma":0.008395112,"domain_scores_codex":[0.9980766,0.0007534584,0.0002080749,0.000550323,0.0001950735,0.0002164204],"domain_scores_gemma":[0.9969609,0.001768618,0.000493749,0.0002788217,0.0002598696,0.0002380244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004290533,0.0002295335,0.9066257,0.0009342242,0.01321427,0.001442856,0.000215585,0.003376256,0.02534498,0.001574751,0.00232607,0.04042526],"study_design_scores_gemma":[0.0003463033,0.0005043582,0.9604692,0.0001132652,0.009692783,0.002422403,0.0003335967,0.01286341,0.003783585,0.004064077,0.005351482,0.00005547181],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9674978,0.005198466,0.01017317,0.0006806966,0.00008873313,0.00008091643,0.01452809,0.0002290885,0.001523132],"genre_scores_gemma":[0.9897224,0.0007765711,0.004172336,0.00009299212,0.00002151816,0.00005001014,0.004585057,0.00003314042,0.0005460147],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005270243,"threshold_uncertainty_score":0.0176307,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127861781","doi":"10.1038/sj.gene.6364232","title":"Complete elucidation of a minimal class I MHC natural killer cell receptor haplotype","year":2005,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; McGill University; McGill University and Génome Québec Innovation Centre","funders":"National Cancer Institute","keywords":"Biology; Haplotype; Major histocompatibility complex; Pseudogene; Genetics; Gene; Immune system; MHC class I; Allele; Natural killer cell; Cytotoxic T cell; Genome; In vitro","authors":[{"name":"Stephen K. Anderson","is_ca":false},{"name":"Ken Dewar","is_ca":true},{"name":"M-L Goulet","is_ca":false},{"name":"Gary Leveque","is_ca":true},{"name":"Andrew P. Makrigiannis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01479526049652412,"gpt":0.2263728181531253,"spread":0.2115775576566012,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001170925,0.0002248872,0.000283641,0.0002089763,0.0001943549,0.0002722213,0.0004621359,0.0002783633,0.002747374],"category_scores_gemma":[0.0002513078,0.0001331692,0.0002891427,0.0001117536,0.0002174666,0.0003035065,0.0003037589,0.0007241533,0.0008578202],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001453112,"about_ca_system_score_gemma":0.0004191372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000508493,"about_ca_topic_score_gemma":0.0003910826,"domain_scores_codex":[0.9999304,0.00001013731,0.000008859663,0.00001927433,0.000008904786,0.00002240421],"domain_scores_gemma":[0.9998628,0.00005189228,0.00001813376,0.00002889761,0.00001673297,0.00002153934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002560011,0.00003459292,0.0005228696,0.00004198065,0.000008253026,0.000245849,0.00003535914,0.0001546399,0.9899313,0.001279741,0.00009944825,0.007389951],"study_design_scores_gemma":[0.00008132242,0.0006097803,0.01109924,0.00003203444,0.0001435412,0.002729185,0.0001670009,0.001665404,0.9585999,0.002319764,0.0225334,0.0000194447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9454775,0.0009417198,0.04563812,0.0003234164,0.0001206508,0.00006014636,0.001179146,0.0001303601,0.006129031],"genre_scores_gemma":[0.9801082,0.0006136065,0.01273936,0.000162324,0.00004618475,0.00005094252,0.002804302,0.00004697446,0.003428194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002747374,"threshold_uncertainty_score":0.009190917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2012974941","doi":"10.1038/gene.2009.88","title":"Remapping the type I diabetes association of the CTLA4 locus","year":2009,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Juvenile Diabetes Research Foundation Canada; Canadian Institutes of Health Research; Genome Canada; Broad Institute; Juvenile Diabetes Research Foundation International","keywords":"Single-nucleotide polymorphism; Linkage disequilibrium; Genetics; Biology; Genotyping; SNP; Locus (genetics); Tag SNP; Genetic association; Genotype; SNP genotyping; Genome-wide association study; Haplotype; Gene","authors":[{"name":"Hui‐Qi Qu","is_ca":true},{"name":"Jonathan P. Bradfield","is_ca":false},{"name":"Struan F.A. Grant","is_ca":false},{"name":"Håkon Håkonarson","is_ca":false},{"name":"Constantin Polychronakos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00477297427214853,"gpt":0.2035396263830749,"spread":0.1987666521109264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003590155,0.0003651987,0.0002237114,0.0007029759,0.0002749932,0.0005199287,0.0004375709,0.0006384967,0.003985023],"category_scores_gemma":[0.0008396907,0.0002284026,0.0003229706,0.0003398481,0.0003421184,0.0001702575,0.0003993627,0.0008120469,0.0006944947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000365929,"about_ca_system_score_gemma":0.0003336654,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008181678,"about_ca_topic_score_gemma":0.000681296,"domain_scores_codex":[0.9997912,0.00006129601,0.00001895464,0.00005448116,0.00003611243,0.00003800871],"domain_scores_gemma":[0.9995273,0.0001464315,0.0001145002,0.00009530699,0.0000468117,0.00006956476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001286015,0.00009425807,0.01623874,0.00009063794,0.00008815883,0.00277797,0.00008774532,0.001151602,0.9462918,0.002616157,0.0009361151,0.0283408],"study_design_scores_gemma":[0.0003993584,0.000675712,0.1654584,0.0001463364,0.0003232614,0.0210226,0.0004212144,0.004488038,0.7602,0.01333612,0.03345469,0.00007420695],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870278,0.002346978,0.005010394,0.001123233,0.0004068425,0.00001205161,0.0005355718,0.0002227026,0.003314395],"genre_scores_gemma":[0.9936103,0.0003796549,0.002684009,0.0003682296,0.0000750593,0.00000944472,0.0002637503,0.00004743987,0.002561995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003985023,"threshold_uncertainty_score":0.01333123,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3148509073","doi":"10.1038/s41435-021-00125-9","title":"USP15: a review of its implication in immune and inflammatory processes and tumor progression","year":2021,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Ubiquitin; Deubiquitinating enzyme; Immune system; Signal transduction; Cell biology; IRF3; Transcription factor; Inflammation; Cancer research; Immunology; Innate immune system; Genetics; Gene","authors":[{"name":"Anna Georges","is_ca":true},{"name":"Philippe Gros","is_ca":true},{"name":"Nassima Fodil","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02838409634695575,"gpt":0.3245924382303582,"spread":0.2962083418834024,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008734692,0.00115772,0.001941395,0.002720654,0.000234519,0.00117025,0.001093028,0.001364009,0.00303471],"category_scores_gemma":[0.001121708,0.0003547937,0.0005346821,0.003087372,0.0005095495,0.001276914,0.0009704854,0.001755881,0.00162189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000691192,"about_ca_system_score_gemma":0.001349152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001219696,"about_ca_topic_score_gemma":0.002518484,"domain_scores_codex":[0.9997601,0.00003610374,0.00004441445,0.00004174907,0.00009171006,0.00002580131],"domain_scores_gemma":[0.9995919,0.0001731089,0.00005388018,0.00001230277,0.0001125078,0.00005640938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002012308,0.00006671689,0.0002005185,0.01731004,0.0001298048,0.0002743002,0.00003480239,0.0003754627,0.002076686,0.002075818,0.08385028,0.8934044],"study_design_scores_gemma":[0.00003968308,0.0001106519,0.0007679322,0.003190573,0.000196959,0.001263541,0.00003564316,0.0001062476,0.0004715708,0.001439647,0.9923502,0.00002726889],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004735867,0.9990804,0.00009590849,0.0001800443,0.0002924209,0.000002824437,0.0000219036,0.000005014852,0.0002740253],"genre_scores_gemma":[0.0002941607,0.9984006,0.0001976028,0.0002434298,0.0004422384,0.000005592467,0.00004623467,0.000001443429,0.0003686633],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00303471,"threshold_uncertainty_score":0.0101521,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2953168303","doi":"10.1038/gene.2014.56","title":"Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity","year":2014,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency; Simon Fraser University","funders":"National Institute of General Medical Sciences; National Institutes of Health; Howard Hughes Medical Institute; Simon Fraser University; University of Washington; National Human Genome Research Institute","keywords":"Biology; Haplotype; Genetics; Locus (genetics); Allele; Contig; Immunoglobulin heavy chain; Immunoglobulin light chain; Gene; Germline; Ploidy; Molecular biology; Genome; Antibody","authors":[{"name":"Corey T. Watson","is_ca":true},{"name":"Karyn Meltz Steinberg","is_ca":false},{"name":"Tina Graves","is_ca":false},{"name":"Robin M. Warren","is_ca":true},{"name":"Maika Malig","is_ca":false},{"name":"Jacqueline E. Schein","is_ca":true},{"name":"Richard K. Wilson","is_ca":false},{"name":"Robert A. Holt","is_ca":true},{"name":"Evan E. Eichler","is_ca":false},{"name":"Felix Breden","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01027389782062242,"gpt":0.1882037038867894,"spread":0.177929806066167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008449162,0.0001538954,0.0001826121,0.000568851,0.0002659142,0.0003852814,0.0001162488,0.0002348121,0.001838603],"category_scores_gemma":[0.0002982049,0.0001381649,0.0002040408,0.0004066952,0.000221387,0.00009294426,0.000262907,0.0003522379,0.000570761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001452756,"about_ca_system_score_gemma":0.0001729768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001357075,"about_ca_topic_score_gemma":0.00226053,"domain_scores_codex":[0.9999343,0.00000629971,0.000003976596,0.00001904595,0.00001623102,0.00002018777],"domain_scores_gemma":[0.9997708,0.0001111396,0.00002424762,0.00002479467,0.00002168266,0.00004741726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000119454,0.00001279613,0.002978866,0.00001915928,0.00001000772,0.0002089662,0.00008481541,0.00005838073,0.9925938,0.00007781986,0.00003448069,0.003801395],"study_design_scores_gemma":[0.00004387146,0.0004111111,0.3352269,0.00003419604,0.0001604944,0.004119194,0.000471363,0.001949192,0.6497259,0.0009716084,0.006862826,0.00002339354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931605,0.0002609318,0.00379305,0.00006240945,0.00000752777,0.00001775521,0.0007196474,0.00005432943,0.001923782],"genre_scores_gemma":[0.9939684,0.0003206391,0.001957091,0.0001256906,0.00001070991,0.00001301915,0.001958661,0.00002935862,0.00161657],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001838603,"threshold_uncertainty_score":0.006150723,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984337734","doi":"10.1038/gene.2014.17","title":"Contribution of increased ISG15, ISGylation and deregulated type I IFN signaling in Usp18 mutant mice during the course of bacterial infections","year":2014,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal General Hospital; McGill University","funders":"National Heart, Lung, and Blood Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"ISG15; Biology; Proinflammatory cytokine; Wild type; Interferon; Salmonella; Autophagy; Signal transduction; Microbiology; Interferon type I; Mutant; Cytokine; Immunology; Cancer research; Gene; Cell biology; Inflammation; Genetics; Apoptosis; Ubiquitin; Bacteria","authors":[{"name":"Shauna Dauphinee","is_ca":true},{"name":"Étienne Richer","is_ca":true},{"name":"Mansura Akter Eva","is_ca":true},{"name":"Fiona McIntosh","is_ca":true},{"name":"Marilène Paquet","is_ca":true},{"name":"David Dangoor","is_ca":false},{"name":"Christoph Burkart","is_ca":false},{"name":"D-E Zhang","is_ca":false},{"name":"Samantha Gruenheid","is_ca":true},{"name":"Philippe Gros","is_ca":true},{"name":"Marcel A. Behr","is_ca":true},{"name":"Danielle Malo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006523250662495191,"gpt":0.2249795192849636,"spread":0.2184562686224684,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001971147,0.0008530506,0.0006239658,0.000989403,0.0002152265,0.0006175222,0.0003370143,0.0008604624,0.001755827],"category_scores_gemma":[0.0002391575,0.0005318655,0.0006174336,0.0002355186,0.0009667809,0.000459019,0.0003408551,0.001587977,0.0003828112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004670771,"about_ca_system_score_gemma":0.0003184877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007330111,"about_ca_topic_score_gemma":0.001101653,"domain_scores_codex":[0.9996635,0.0000398492,0.00004434439,0.00008350436,0.00006392971,0.0001050179],"domain_scores_gemma":[0.999321,0.00003494756,0.0002584889,0.00004988584,0.00002943317,0.0003062527],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001346036,0.00005553237,0.0009836436,0.00002651443,0.00001472183,0.0002383622,0.00002072836,0.00007956511,0.9961902,0.0001471767,0.0000486813,0.0008488276],"study_design_scores_gemma":[0.0001191091,0.0007769929,0.05399476,0.00003147842,0.0001181568,0.001689944,0.0001989456,0.001483973,0.9394443,0.0005126601,0.001598569,0.00003101334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972786,0.0007927949,0.0008148178,0.000123464,0.00004179963,0.00001267479,0.0005020304,0.00007152701,0.0003622803],"genre_scores_gemma":[0.9952998,0.0005149696,0.001090947,0.00008051777,0.00002297747,0.00003470842,0.0004087951,0.00008508801,0.002462132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001755827,"threshold_uncertainty_score":0.005873859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045750371","doi":"10.1038/gene.2009.38","title":"Identification of new SLE-associated genes with a two-step Bayesian study design","year":2009,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Center for Research Resources; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Lupus Research Alliance","keywords":"Biology; Identification (biology); Gene; Genetics; Bayesian probability; Computational biology; Evolutionary biology; Ecology; Artificial intelligence; Computer science","authors":[{"name":"Don Armstrong","is_ca":false},{"name":"Andreas Reiff","is_ca":false},{"name":"Barry L. Myones","is_ca":false},{"name":"F P Quismorio","is_ca":false},{"name":"Marisa S. Klein‐Gitelman","is_ca":false},{"name":"Deborah McCurdy","is_ca":false},{"name":"Linda Wagner‐Weiner","is_ca":false},{"name":"Earl D. Silverman","is_ca":true},{"name":"J O Ojwang","is_ca":false},{"name":"Kenneth M. Kaufman","is_ca":false},{"name":"Jennifer A. Kelly","is_ca":false},{"name":"Joan T. Merrill","is_ca":false},{"name":"John B. Harley","is_ca":false},{"name":"Timothy J. Vyse","is_ca":false},{"name":"Gary S. Gilkeson","is_ca":false},{"name":"Patrick M. Gaffney","is_ca":false},{"name":"K L Moser","is_ca":false},{"name":"Chaim Putterman","is_ca":false},{"name":"Jeffrey C. Edberg","is_ca":false},{"name":"Elizabeth E. Brown","is_ca":false},{"name":"Julie T. Ziegler","is_ca":false},{"name":"Carl D. Langefeld","is_ca":false},{"name":"Raphael Zidovetzki","is_ca":false},{"name":"Chaim O. Jacob","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02020787082579518,"gpt":0.276081477434412,"spread":0.2558736066086169,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.1337129,0.002488186,0.006424993,0.003244094,0.003038411,0.003070802,0.007359804,0.005669817,0.007385802],"category_scores_gemma":[0.1976833,0.003805655,0.006326299,0.001955556,0.003516905,0.00296004,0.005339104,0.004447503,0.001093316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001155598,"about_ca_system_score_gemma":0.005895977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002303141,"about_ca_topic_score_gemma":0.002651396,"domain_scores_codex":[0.8926482,0.0879928,0.004360122,0.009742382,0.003550079,0.00170633],"domain_scores_gemma":[0.8103685,0.1513349,0.006814017,0.01995105,0.008358085,0.003173288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.08230653,0.005362461,0.2561491,0.003658763,0.01769764,0.002176868,0.00287746,0.1046398,0.02649731,0.07949245,0.005243753,0.4138979],"study_design_scores_gemma":[0.02051458,0.01592651,0.06748477,0.0004321749,0.01786323,0.002092353,0.000381884,0.7366426,0.01145744,0.117174,0.009291564,0.000738819],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.09028558,0.000538059,0.898671,0.0008660936,0.0001717978,0.007610315,0.0006180997,0.0005118605,0.0007271182],"genre_scores_gemma":[0.3622335,0.0003063907,0.6145376,0.0007454741,0.0001325651,0.01919144,0.001080186,0.0001106506,0.001662196],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1337129,"threshold_uncertainty_score":0.70715,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2008424354","doi":"10.1038/sj.gene.6364211","title":"Allelic effects on gene regulation at the autoimmunity-predisposing CTLA4 locus: a re-evaluation of the 3′ +6230G&gt;A polymorphism","year":2005,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Montreal Children's Hospital","funders":"","keywords":"Biology; Single-nucleotide polymorphism; Genetics; Linkage disequilibrium; Allele; Gene isoform; Locus (genetics); Polyadenylation; SNP; Exon; Gene; Primer extension; Alternative splicing; Complementary DNA; Molecular biology; Genotype; RNA","authors":[{"name":"Suzana M. Anjos","is_ca":true},{"name":"Wenlin Shao","is_ca":true},{"name":"Luc Marchand","is_ca":true},{"name":"Constantin Polychronakos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01018445175781328,"gpt":0.2364374907305492,"spread":0.2262530389727359,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009903027,0.0008939051,0.0006368228,0.001017897,0.0005085737,0.0004187831,0.0005420654,0.0005227178,0.004820773],"category_scores_gemma":[0.0008134996,0.0002427588,0.001171969,0.000671907,0.0005022096,0.0001503691,0.0004017686,0.0008560055,0.0004694934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000272993,"about_ca_system_score_gemma":0.0003079039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002591125,"about_ca_topic_score_gemma":0.003320205,"domain_scores_codex":[0.9990478,0.0004599969,0.0001073715,0.0001729188,0.0001272322,0.00008466864],"domain_scores_gemma":[0.9990199,0.0004833619,0.0001119718,0.0001763998,0.00007911945,0.0001293343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004029744,0.0004152766,0.02810586,0.00006910009,0.0003634174,0.003627515,0.000293119,0.0005839824,0.9480546,0.00064749,0.0001930504,0.01361682],"study_design_scores_gemma":[0.00157225,0.005213181,0.7328153,0.0001030737,0.003497633,0.02464177,0.0006370019,0.005569129,0.2125463,0.001591822,0.0116122,0.0002002378],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954372,0.0003475079,0.001995779,0.0001380789,0.00004263597,0.00002160661,0.0003854082,0.00004752949,0.001584319],"genre_scores_gemma":[0.9965706,0.0002322629,0.001367671,0.0001455228,0.00004833377,0.00001998621,0.0002989385,0.0001172821,0.001199381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004820773,"threshold_uncertainty_score":0.01612705,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093441632","doi":"10.1038/gene.2014.12","title":"The Saguenay-Lac-Saint-Jean asthma familial collection: the genetics of asthma in a young founder population","year":2014,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université du Québec à Chicoutimi","funders":"Canadian Institutes of Health Research; Université du Québec à Chicoutimi; Canada Research Chairs; Burroughs Wellcome Fund","keywords":"Biology; Founder effect; Genetics; Population genetics; Asthma; SAINT; Population; Demography; Haplotype; Genealogy; Genotype; Gene; History; Immunology; Art history","authors":[{"name":"Catherine Laprise","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01376184527387902,"gpt":0.2565100068941241,"spread":0.2427481616202451,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009212944,0.0005487321,0.0007630025,0.002648796,0.002434824,0.0008987636,0.0006770684,0.0007883553,0.004833539],"category_scores_gemma":[0.001888519,0.0002694514,0.0005371051,0.002122434,0.0003283331,0.0002113376,0.0009859791,0.0005136299,0.0006627275],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001027118,"about_ca_system_score_gemma":0.001663993,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1436106,"about_ca_topic_score_gemma":0.1463649,"domain_scores_codex":[0.9993848,0.0001843119,0.00004956138,0.0001370301,0.0001428397,0.0001014352],"domain_scores_gemma":[0.9992526,0.0001477993,0.00009686112,0.00007564941,0.0001888927,0.0002381137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007933734,0.0001427239,0.9155291,0.00009759409,0.0002677723,0.01168721,0.007838862,0.0003251523,0.01222315,0.001272112,0.008339628,0.04148341],"study_design_scores_gemma":[0.00006615729,0.0001416651,0.9764985,0.0001093336,0.0001639107,0.006395104,0.002133139,0.0002974111,0.0007866664,0.000292855,0.01308432,0.00003090206],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910946,0.001151891,0.001033817,0.0005340583,0.00006953967,0.00006959739,0.003353168,0.00003108251,0.002662193],"genre_scores_gemma":[0.9867128,0.001959804,0.002378802,0.0003441739,0.0002148456,0.0001076987,0.002770855,0.00007782259,0.005433075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8563894,"threshold_uncertainty_score":0.2855495,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1998183937","doi":"10.1038/sj.gene.6364340","title":"Association study between the CX3CR1 gene and asthma","year":2006,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Chemokine receptors and signaling","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; McGill University and Génome Québec Innovation Centre; Université de Montréal; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Cégep de Chicoutimi; Université du Québec à Chicoutimi","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Burroughs Wellcome Fund","keywords":"Asthma; Biology; Allele; Single-nucleotide polymorphism; Pathophysiology of asthma; Haplotype; Minor allele frequency; Genetic variation; Immunology; Locus (genetics); Genetics; Odds ratio; Heterozygote advantage; CX3CR1; Genetic model; Genetic association; Case-control study; Allele frequency; Genotype; Gene; Chemokine receptor; Internal medicine; Inflammation; Medicine; Chemokine","authors":[{"name":"Karine Tremblay","is_ca":true},{"name":"Mathieu Lemire","is_ca":true},{"name":"V Provost","is_ca":true},{"name":"Tomi Pastinen","is_ca":true},{"name":"Yannick Renaud","is_ca":true},{"name":"Andrew J. Sandford","is_ca":true},{"name":"Michel Laviolette","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"Catherine Laprise","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01467967711349585,"gpt":0.2539764286153771,"spread":0.2392967515018813,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005181966,0.000255265,0.0003865333,0.0007373443,0.0006521195,0.0002655876,0.0003006192,0.0004779577,0.002626832],"category_scores_gemma":[0.001046111,0.0002217866,0.0004201448,0.0005923256,0.0003882522,0.000166176,0.0002254159,0.0007188349,0.0002607327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002508017,"about_ca_system_score_gemma":0.0003554339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003756636,"about_ca_topic_score_gemma":0.00259541,"domain_scores_codex":[0.9995828,0.0001803249,0.00002383,0.0001028346,0.00005275283,0.00005742486],"domain_scores_gemma":[0.9993036,0.0002866146,0.0001005715,0.00007340346,0.00006229421,0.0001735748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006256507,0.0006017429,0.9452592,0.00004908243,0.0004145051,0.002284946,0.0002811824,0.0001255429,0.03753229,0.0002784714,0.0004772781,0.006439234],"study_design_scores_gemma":[0.0001496398,0.00131599,0.9919512,0.000006596708,0.000237612,0.002436417,0.0001822503,0.0004931169,0.002428814,0.00009777772,0.0006920343,0.00000852071],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992021,0.0002350088,0.0001437749,0.000065188,0.0000111378,0.000006309016,0.00009258334,0.000003785949,0.0002401599],"genre_scores_gemma":[0.9988812,0.0000809366,0.0001558697,0.00002779114,0.00001843755,0.000007018263,0.0001118296,0.000003093549,0.0007138952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003756636,"threshold_uncertainty_score":0.008787632,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2056342910","doi":"10.1038/gene.2010.47","title":"A targeted association study in systemic lupus erythematosus identifies multiple susceptibility alleles","year":2010,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôpital Maisonneuve-Rosemont; University of Calgary; Hôpital Fleurimont; Université de Montréal; Queen Elizabeth II Health Sciences Centre; Centre Hospitalier de l’Université de Montréal; Manitoba Health; Montreal General Hospital; Dalhousie University; Ottawa Hospital; University Health Network; University of Toronto; Ontario Institute for Cancer Research; Arthritis Research Centre of Canada; St Joseph's Health Centre; Toronto Western Hospital; Montreal Heart Institute","funders":"Canadian Institutes of Health Research; Lupus Canada; University Health Network","keywords":"Biology; PTPN22; Immunology; IRF5; Single-nucleotide polymorphism; Genetics; Major histocompatibility complex; Allele; Genome-wide association study; Gene; Immune system; Genotype; Interferon regulatory factors; Innate immune system","authors":[{"name":"Marcia L. Budarf","is_ca":true},{"name":"Philippe Goyette","is_ca":true},{"name":"Gabrielle Boucher","is_ca":true},{"name":"Jingyao Lian","is_ca":true},{"name":"Robert Graham","is_ca":false},{"name":"Jaime O. Claudio","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"Dafna D. Gladman","is_ca":true},{"name":"Ann E. Clarke","is_ca":true},{"name":"Janet Pope","is_ca":true},{"name":"Christine Peschken","is_ca":true},{"name":"Chris Smith","is_ca":true},{"name":"John G. Hanly","is_ca":true},{"name":"E. Rich","is_ca":true},{"name":"Gilles Boire","is_ca":true},{"name":"Susan G. Barr","is_ca":true},{"name":"Michel Zummer","is_ca":true},{"name":"Paul R. Fortin","is_ca":true},{"name":"Joan Wither","is_ca":true},{"name":"John D. Rioux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006368909858116077,"gpt":0.2272407111259487,"spread":0.2208718012678326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008455789,0.0007953311,0.000516272,0.001157988,0.0006346152,0.0005305925,0.0003656064,0.0007351863,0.002738024],"category_scores_gemma":[0.001814827,0.000314124,0.0006950029,0.0008801281,0.0004265847,0.0001604846,0.0005075824,0.0006756374,0.0002808304],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001722513,"about_ca_system_score_gemma":0.0002156416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001123168,"about_ca_topic_score_gemma":0.001105747,"domain_scores_codex":[0.9990392,0.0003778103,0.00007367069,0.0003142601,0.0001073364,0.00008781596],"domain_scores_gemma":[0.9987655,0.0005550461,0.0002579728,0.0001114462,0.00007550905,0.0002345804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01333067,0.001037662,0.5266109,0.0001298354,0.001861366,0.009764725,0.0007161642,0.000504398,0.4232042,0.001199642,0.0005939124,0.0210465],"study_design_scores_gemma":[0.0006820531,0.00239882,0.9535648,0.00003435122,0.002009602,0.01525792,0.0002580514,0.002072749,0.02111251,0.0007856922,0.001787694,0.00003565689],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975922,0.0002353217,0.001441385,0.000089065,0.00001740821,0.00001206998,0.0001045622,0.0000241673,0.0004838643],"genre_scores_gemma":[0.9986833,0.00006319625,0.0006994942,0.00006480638,0.00001503716,0.000009267574,0.00006035183,0.00001015782,0.0003945326],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002738024,"threshold_uncertainty_score":0.009159625,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025063123","doi":"10.1038/sj.gene.6363876","title":"Genetic control of innate immune responses against cytomegalovirus: MCMV meets its match","year":2002,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"McGill University","keywords":"Biology; Innate immune system; Immunology; Immune system; Major histocompatibility complex; Genetics; Population; Virology","authors":[{"name":"John R. Webb","is_ca":true},{"name":"S H Lee","is_ca":true},{"name":"Silvia M. Vidal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03495157786295375,"gpt":0.278180742379346,"spread":0.2432291645163923,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002578242,0.0006536088,0.0008692713,0.0005681152,0.000167109,0.0007498311,0.0007848574,0.0008432592,0.001314171],"category_scores_gemma":[0.0002172056,0.0001800508,0.0001566744,0.0006251322,0.0005511466,0.0007990052,0.0003522288,0.001032262,0.0008983963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000689354,"about_ca_system_score_gemma":0.0003638616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006385405,"about_ca_topic_score_gemma":0.000808657,"domain_scores_codex":[0.9999003,0.00001181442,0.00001095984,0.00002265504,0.00003932048,0.00001484116],"domain_scores_gemma":[0.9999125,0.00003538304,0.00001463576,0.000006675557,0.00001771681,0.00001303176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003315918,0.00004633509,0.0002850176,0.004163369,0.00005305373,0.0008696487,0.00007047686,0.0007923458,0.1967876,0.01534907,0.01364073,0.7676107],"study_design_scores_gemma":[0.0000402236,0.00011528,0.001396416,0.0004542244,0.00006942886,0.001959915,0.00009131231,0.0003568485,0.05885807,0.005800476,0.9308312,0.00002673297],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003966402,0.9872111,0.002091419,0.0008416691,0.001076915,0.00001093428,0.00005346947,0.0000611633,0.004686945],"genre_scores_gemma":[0.02968029,0.9605953,0.00201979,0.0006112944,0.000688894,0.00002429622,0.0001347063,0.00001515868,0.006230185],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001314171,"threshold_uncertainty_score":0.005001664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073145674","doi":"10.1038/sj.gene.6364309","title":"Incremental expression of Tlr4 correlates with mouse resistance to Salmonella infection and fine regulation of relevant immune genes","year":2006,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Salmonella; TLR4; Immune system; Microbiology; Gene; Spleen; Salmonella infection; Transgene; Toll-like receptor; Lipopolysaccharide; Bacteria; Innate immune system; Immunology; Genetics","authors":[{"name":"M-F Roy","is_ca":true},{"name":"L Larivière","is_ca":true},{"name":"R Wilkinson","is_ca":true},{"name":"M Tam","is_ca":true},{"name":"M M Stevenson","is_ca":true},{"name":"Danielle Malo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01282806759443749,"gpt":0.2578854116398319,"spread":0.2450573440453944,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002569594,0.0005423881,0.0004000945,0.001749923,0.0001841763,0.0006556463,0.0002537978,0.0006643508,0.00260864],"category_scores_gemma":[0.0003898725,0.00062285,0.0005304221,0.0003904871,0.0005446416,0.0003745359,0.0004352305,0.001740968,0.0007527206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003925231,"about_ca_system_score_gemma":0.000145811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002904329,"about_ca_topic_score_gemma":0.0003901675,"domain_scores_codex":[0.9995648,0.00005854434,0.00003986693,0.0001158482,0.00007423204,0.0001465971],"domain_scores_gemma":[0.9989138,0.000140705,0.0004396331,0.0001290789,0.00009007304,0.0002868399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003843571,0.00002683008,0.0009772751,0.000009987803,0.000004270596,0.00003025906,0.000007964991,0.00001878876,0.9981792,0.00003812895,0.00001741789,0.0003055371],"study_design_scores_gemma":[0.00005035283,0.0007531181,0.07995486,0.000009201011,0.00005366993,0.0007805097,0.0001130303,0.0006893912,0.9165576,0.0001760377,0.0008466506,0.00001561413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958879,0.0007142501,0.001706736,0.00009795535,0.0000185245,0.00001806548,0.0006200221,0.0001421776,0.0007943136],"genre_scores_gemma":[0.9928119,0.0004018082,0.001834877,0.00009389716,0.00002537172,0.00006725123,0.001012809,0.00008532883,0.00366681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00260864,"threshold_uncertainty_score":0.008726716,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974016811","doi":"10.1038/sj.gene.6364130","title":"Genetic analysis of innate immunity in resistance to Candida albicans","year":2004,"lang":"en","type":"review","venue":"Genes and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"National Research Council Canada; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; McGill University; Genomic Health","keywords":"Biology; Innate immune system; Candida albicans; Immunity; Corpus albicans; Immunology; Immune system; Acquired immune system; Complement system; Genetics; Microbiology","authors":[{"name":"Ashleigh R. Tuite","is_ca":true},{"name":"Alaka Mullick","is_ca":true},{"name":"Philippe Gros","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03462601562799604,"gpt":0.3358696430889055,"spread":0.3012436274609094,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006299732,0.0009962465,0.001503017,0.00195727,0.0002181052,0.0008887892,0.001097464,0.001193594,0.001480763],"category_scores_gemma":[0.0008122923,0.0002862167,0.0004045873,0.002011167,0.0008604714,0.001132397,0.0004833162,0.001945815,0.001231395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008220464,"about_ca_system_score_gemma":0.00105835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001448695,"about_ca_topic_score_gemma":0.001842414,"domain_scores_codex":[0.9998074,0.00002676168,0.00003057037,0.00004122199,0.00007781161,0.00001629329],"domain_scores_gemma":[0.9995885,0.0001930196,0.00005666616,0.00001632035,0.0001064935,0.0000388569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002246469,0.0001121123,0.0002905589,0.01046045,0.0000881945,0.0004561774,0.0000461698,0.0006402227,0.01199523,0.004716416,0.02832483,0.942645],"study_design_scores_gemma":[0.00005428974,0.0001130258,0.001290265,0.002517754,0.0001944663,0.002334116,0.00006634024,0.0001743265,0.004304199,0.003081839,0.9858375,0.00003187466],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002017087,0.9979793,0.0003143144,0.0002683373,0.0002773314,0.000004664771,0.00001539342,0.000008139021,0.0009308103],"genre_scores_gemma":[0.0008512691,0.9975056,0.0004468597,0.0002458075,0.0002256201,0.000005354546,0.00003393744,0.000001410163,0.0006841049],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00195727,"threshold_uncertainty_score":0.005964458,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001242651","doi":"10.1038/sj.gene.6364413","title":"IA-2 autoantibodies in incident type I diabetes patients are associated with a polyadenylation signal polymorphism in GIMAP5","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Autoantibody; Type 1 diabetes; Single-nucleotide polymorphism; Internal medicine; Haplotype; Biology; SNP; Type 2 diabetes; Diabetes mellitus; Minor allele frequency; Autoimmunity; Immunology; Allele frequency; Allele; Age of onset; Genotype; Endocrinology; Disease; Medicine; Genetics; Antibody; Gene","authors":[{"name":"J‐H Shin","is_ca":true},{"name":"Marta Janer","is_ca":false},{"name":"Brad McNeney","is_ca":true},{"name":"Sigal Blay","is_ca":true},{"name":"Kerry Deutsch","is_ca":false},{"name":"C. B. SANJEEVI","is_ca":false},{"name":"Ingrid Kockum","is_ca":false},{"name":"Åke Lernmark","is_ca":false},{"name":"Jinko Graham","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00587572036440343,"gpt":0.2186888029936655,"spread":0.212813082629262,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003202259,0.0009999836,0.0003919646,0.001183325,0.0005621197,0.0006724871,0.0004962549,0.001010648,0.004536702],"category_scores_gemma":[0.001562051,0.0005075156,0.0004894366,0.0009631412,0.0003690886,0.0003137519,0.0003105563,0.001066544,0.000490047],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000180039,"about_ca_system_score_gemma":0.0001349103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000973733,"about_ca_topic_score_gemma":0.00074505,"domain_scores_codex":[0.999653,0.00009595156,0.00004297838,0.00009551789,0.0000544502,0.00005805073],"domain_scores_gemma":[0.998478,0.0004942164,0.0005689777,0.0001046472,0.00007097642,0.0002832274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002857091,0.000366306,0.9425412,0.0000537714,0.0003071562,0.006754538,0.0003543322,0.0001435364,0.04204736,0.0001508695,0.0003861148,0.004037756],"study_design_scores_gemma":[0.00007963912,0.0002754259,0.9853403,0.00001426494,0.0001872266,0.01102583,0.0001412291,0.0005486432,0.001912281,0.0001191522,0.000341996,0.00001397272],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988193,0.0001189178,0.000242152,0.00005629782,0.00002339142,0.000004888425,0.0001226581,0.00002284747,0.0005895956],"genre_scores_gemma":[0.999347,0.00004030989,0.0001638317,0.00004595319,0.00002957116,0.000005035832,0.0001073867,0.000008100628,0.0002528096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004536702,"threshold_uncertainty_score":0.01517671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134221856","doi":"10.1038/gene.2008.43","title":"Ly49 cluster sequence analysis in a mouse model of diabetes: an expanded repertoire of activating receptors in the NOD genome","year":2008,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health; Wellcome Trust; U.S. Department of Health and Human Services","keywords":"Biology; Nod; NOD mice; Haplotype; Gene; Genetics; Receptor; Major histocompatibility complex; Genotype","authors":[{"name":"Simon Bélanger","is_ca":true},{"name":"L-H Tai","is_ca":true},{"name":"Stephen K. Anderson","is_ca":false},{"name":"Andrew P. Makrigiannis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03828214175690262,"gpt":0.2506629424069524,"spread":0.2123808006500497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001340874,0.0003294352,0.0002265298,0.001004309,0.0002185079,0.00031175,0.0002582584,0.0004785054,0.002681657],"category_scores_gemma":[0.0001591978,0.0001735266,0.0003268484,0.0002694185,0.0003150555,0.0001598985,0.000229794,0.0006578715,0.0007029692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002733266,"about_ca_system_score_gemma":0.0001349787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000725353,"about_ca_topic_score_gemma":0.0009225488,"domain_scores_codex":[0.999778,0.00002701639,0.00001672689,0.00006617328,0.00005595562,0.0000562706],"domain_scores_gemma":[0.9996543,0.00005707287,0.0001006979,0.0000333004,0.00003409283,0.000120611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001384569,0.00001012724,0.0001766235,0.000006157598,0.000003131606,0.00007913321,0.000005115355,0.00003060219,0.9991192,0.00007087694,0.0000186246,0.0003420853],"study_design_scores_gemma":[0.00005193154,0.0002101265,0.0255653,0.00001547604,0.0000638112,0.001841022,0.00006444735,0.001760497,0.9674217,0.0002502155,0.002742258,0.00001340521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991198,0.0004219661,0.004960512,0.0001517433,0.00002080947,0.00001639095,0.001553859,0.0001127297,0.001563939],"genre_scores_gemma":[0.9871509,0.0003342046,0.005132915,0.0001793089,0.00001801208,0.00004125682,0.002410713,0.0001618352,0.004570805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002681657,"threshold_uncertainty_score":0.008970976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996242436","doi":"10.1038/sj.gene.6364303","title":"The role of inflammatory bowel disease susceptibility loci in multiple sclerosis and systemic lupus erythematosus","year":2006,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"National Institute of Neurological Disorders and Stroke; U.S. Public Health Service; Beth Israel Deaconess Medical Center; National Institute of Diabetes and Digestive and Kidney Diseases; Crohn's and Colitis Foundation of America","keywords":"Allele; Biology; Inflammatory bowel disease; Haplotype; Locus (genetics); Immunology; Genetics; Multiple sclerosis; Disease; Gene; Medicine; Internal medicine","authors":[{"name":"Philip L. De Jager","is_ca":false},{"name":"Robert Graham","is_ca":false},{"name":"Lisa Farwell","is_ca":false},{"name":"Stephen Sawcer","is_ca":false},{"name":"Angela M. Richardson","is_ca":false},{"name":"Timothy W. Behrens","is_ca":false},{"name":"Alastair Compston","is_ca":false},{"name":"David A. Hafler","is_ca":false},{"name":"Juha Kere","is_ca":false},{"name":"Timothy J. Vyse","is_ca":false},{"name":"John D. Rioux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007398912341239811,"gpt":0.1949797169993462,"spread":0.1875808046581063,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006130741,0.0003558478,0.0003912752,0.001088029,0.0002887873,0.000596066,0.0003024259,0.0005704769,0.001231497],"category_scores_gemma":[0.001582805,0.0002113281,0.0002069264,0.0005319506,0.0006418279,0.0004283979,0.0003093725,0.0004764487,0.0001759614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002554566,"about_ca_system_score_gemma":0.000242561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006681255,"about_ca_topic_score_gemma":0.0006414849,"domain_scores_codex":[0.9996038,0.0002060898,0.00002452343,0.00005431435,0.00006749841,0.00004384614],"domain_scores_gemma":[0.9991269,0.0004017248,0.0002194136,0.00005915825,0.0000653537,0.0001275163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01582433,0.0005214207,0.2957262,0.0007399265,0.00051465,0.009903628,0.0008604804,0.003322529,0.511894,0.02294923,0.001912676,0.1358311],"study_design_scores_gemma":[0.0006701329,0.001038499,0.8870969,0.0002166476,0.0005776931,0.01833135,0.0007739273,0.003099912,0.04257677,0.02949327,0.01604813,0.00007680625],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9401176,0.04965127,0.002788247,0.002873784,0.0001566218,0.00001137502,0.0002352679,0.00004409663,0.004121638],"genre_scores_gemma":[0.992039,0.005091006,0.001358931,0.000194139,0.0001466208,0.000009003233,0.00006224999,0.000008801268,0.001090336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001231497,"threshold_uncertainty_score":0.004119754,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979101011","doi":"10.1038/sj.gene.6364374","title":"Complex genetic control of host susceptibility to coxsackievirus B3-induced myocarditis","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland; McGill University; University of Ottawa","funders":"Canadian Institutes of Health Research; Génome Québec; Canada Research Chairs; McGill University","keywords":"Biology; Locus (genetics); Genetics; Myocarditis; Viral Myocarditis; Haplotype; Coxsackievirus; Genotype; Immunology; Virus; Gene; Enterovirus; Internal medicine; Medicine","authors":[{"name":"Mahmoud Aly","is_ca":true},{"name":"S Wiltshire","is_ca":true},{"name":"G Chahrour","is_ca":true},{"name":"J-C Loredo Osti","is_ca":true},{"name":"Silvia M. Vidal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05060559502701333,"gpt":0.3393013843149408,"spread":0.2886957892879275,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002123613,0.0003198927,0.0002185242,0.0004847028,0.0002127051,0.0004499942,0.0002202081,0.0002919398,0.001785905],"category_scores_gemma":[0.0003300873,0.0001674031,0.0002211946,0.000170651,0.000366169,0.0001932692,0.0003736111,0.0006242644,0.000225179],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003761978,"about_ca_system_score_gemma":0.0001776389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008577798,"about_ca_topic_score_gemma":0.0009761168,"domain_scores_codex":[0.9997875,0.00005158085,0.00001535532,0.00004280425,0.00004068968,0.00006213275],"domain_scores_gemma":[0.9996312,0.00008618196,0.000112281,0.0000498939,0.000023142,0.00009737331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002325599,0.00002246065,0.0008399,0.000007534755,0.000006179812,0.00008015372,0.00001644592,0.00005885091,0.9977615,0.0002736805,0.00003099241,0.000669808],"study_design_scores_gemma":[0.0002241109,0.0005279902,0.2745735,0.00002546386,0.00009137492,0.002277996,0.0003253827,0.005944794,0.7117496,0.001756349,0.002461025,0.00004242567],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976885,0.0002765007,0.00104894,0.000066793,0.00001072693,0.00001152301,0.0001442058,0.00004925697,0.0007035588],"genre_scores_gemma":[0.9986261,0.00009895957,0.0004775848,0.00002848071,0.00000690112,0.00001224724,0.00009296933,0.00002438774,0.0006324057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001785905,"threshold_uncertainty_score":0.005974472,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073886810","doi":"10.1038/sj.gene.6364069","title":"Phenotypic expression of pyruvate kinase deficiency and protection against malaria in a mouse model","year":2004,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Erythrocyte Function and Pathophysiology","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Aegera Therapeutics (Canada); McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Burroughs Wellcome Fund","keywords":"Biology; Phenotype; Malaria; Pyruvate kinase deficiency; Pyruvate kinase; Genetics; Virology; Immunology; Gene; Enzyme; Glycolysis; Biochemistry","authors":[{"name":"Gundula Min‐Oo","is_ca":true},{"name":"A. Fortin","is_ca":true},{"name":"M-F Tam","is_ca":true},{"name":"Philippe Gros","is_ca":true},{"name":"MM Stevenson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02661828421193411,"gpt":0.2448683229414173,"spread":0.2182500387294832,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004649899,0.001503982,0.0005760522,0.002098414,0.0004478366,0.0006583636,0.0007113917,0.001186743,0.002445255],"category_scores_gemma":[0.0003133245,0.0005481612,0.0006305779,0.0005054729,0.001119259,0.0005980993,0.000484455,0.002548726,0.0006171027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004966423,"about_ca_system_score_gemma":0.0003170774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005362117,"about_ca_topic_score_gemma":0.0006204167,"domain_scores_codex":[0.9995921,0.0000972101,0.00005135966,0.00009444777,0.00008114141,0.00008367131],"domain_scores_gemma":[0.999369,0.00009190265,0.0002406255,0.00007543487,0.00003513043,0.0001879786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001425492,0.0003994776,0.000508766,0.00006535298,0.00002358991,0.0006786623,0.00004600937,0.0001712955,0.9943801,0.0009039765,0.0001864085,0.001210968],"study_design_scores_gemma":[0.0006542852,0.002235198,0.008038304,0.00005796958,0.000166563,0.004477846,0.0001330533,0.002288033,0.9773645,0.0008254805,0.00372272,0.00003600017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888576,0.00122827,0.004990799,0.0006864496,0.00008660443,0.000163288,0.001555779,0.0003758948,0.002055206],"genre_scores_gemma":[0.9862511,0.001382308,0.004483211,0.0002236339,0.00005097393,0.0002552311,0.001039269,0.0001378635,0.006176287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002445255,"threshold_uncertainty_score":0.008180201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119708638","doi":"10.1038/gene.2013.19","title":"Extended haplotype association study in Crohn’s disease identifies a novel, Ashkenazi Jewish-specific missense mutation in the NF-κB pathway gene, HEATR3","year":2013,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Center for Research Resources; National Institute of General Medical Sciences; Crohn's and Colitis Foundation","keywords":"Haplotype; Biology; Genetics; Population; Genotyping; NOD2; Missense mutation; Genetic association; Single-nucleotide polymorphism; Mutation; Genotype; Gene; Medicine","authors":[{"name":"Wei Zhang","is_ca":false},{"name":"K. Hui","is_ca":false},{"name":"Alexander Gusev","is_ca":false},{"name":"Neil Warner","is_ca":false},{"name":"Sok Meng Evelyn Ng","is_ca":false},{"name":"John Ferguson","is_ca":false},{"name":"Murim Choi","is_ca":false},{"name":"Aaron Burberry","is_ca":false},{"name":"Clara Abraham","is_ca":false},{"name":"L Mayer","is_ca":false},{"name":"Robert J. Desnick","is_ca":false},{"name":"Christopher J. Cardinale","is_ca":false},{"name":"Håkon Håkonarson","is_ca":false},{"name":"Matti Waterman","is_ca":false},{"name":"Yehuda Chowers","is_ca":false},{"name":"Amir Karban","is_ca":false},{"name":"Steven R. Brant","is_ca":false},{"name":"Mark S. Silverberg","is_ca":true},{"name":"Peter K. Gregersen","is_ca":false},{"name":"Seymour Katz","is_ca":false},{"name":"Richard P. Lifton","is_ca":false},{"name":"Hongyu Zhao","is_ca":false},{"name":"Gabriel Núñez","is_ca":false},{"name":"Itsik Pe’er","is_ca":false},{"name":"Inga Peter","is_ca":false},{"name":"J H Cho","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01242188220478223,"gpt":0.2349936847976654,"spread":0.2225718025928831,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002141857,0.0003587955,0.0002504784,0.0004600221,0.0005378118,0.0001984592,0.0001936032,0.0005381054,0.002023797],"category_scores_gemma":[0.0005504311,0.0001167912,0.0003048097,0.0004525578,0.0002848445,0.0000968848,0.0001757343,0.0003284556,0.0001967682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001485511,"about_ca_system_score_gemma":0.0001849427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002766719,"about_ca_topic_score_gemma":0.004805584,"domain_scores_codex":[0.9998558,0.00003039791,0.00001820448,0.00004576,0.00002922443,0.00002057114],"domain_scores_gemma":[0.9997242,0.0001024765,0.00006338787,0.00001958994,0.00002679893,0.00006343709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003204437,0.000312893,0.6507755,0.00007708275,0.0004701047,0.04169084,0.001130009,0.0006097872,0.2777757,0.0007877499,0.000987536,0.02217835],"study_design_scores_gemma":[0.0001585727,0.0005269827,0.9501104,0.00002138699,0.0002498354,0.03738794,0.0002650599,0.00145524,0.007657223,0.0003156047,0.001828212,0.00002368842],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989255,0.0001103731,0.000431679,0.00005592999,0.00001106629,0.000005272123,0.0001130934,0.0000111179,0.0003359088],"genre_scores_gemma":[0.9995131,0.00002886492,0.0001817283,0.00002250559,0.000008263569,0.000002155878,0.00005544854,0.000003856,0.0001839852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002766719,"threshold_uncertainty_score":0.006770253,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140874657","doi":"10.1038/gene.2011.8","title":"Fine mapping the TAGAP risk locus in rheumatoid arthritis","year":2011,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Chronic Lymphocytic Leukemia Research","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institutes of Health; Versus Arthritis; National Institute of General Medical Sciences; U.S. Public Health Service; Burroughs Wellcome Fund","keywords":"Single-nucleotide polymorphism; Imputation (statistics); Genome-wide association study; International HapMap Project; Biology; Locus (genetics); SNP; Genetics; Genetic association; Linkage disequilibrium; Haplotype; Allele; Odds ratio; Population stratification; Minor allele frequency; Allele frequency; Population; 1000 Genomes Project; Rheumatoid arthritis; Internal medicine; Genotype; Gene; Medicine; Immunology; Statistics; Missing data; Environmental health","authors":[{"name":"R Chen","is_ca":false},{"name":"Eli A. Stahl","is_ca":false},{"name":"Fina Kurreeman","is_ca":false},{"name":"Peter K. Gregersen","is_ca":false},{"name":"Katherine Siminovitch","is_ca":true},{"name":"Jane Worthington","is_ca":false},{"name":"Leonid Padyukov","is_ca":false},{"name":"Soumya Raychaudhuri","is_ca":false},{"name":"Robert M. Plenge","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05206533364500842,"gpt":0.2608254372490662,"spread":0.2087601036040578,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001284546,0.0002898241,0.0003868584,0.0004968591,0.0003705915,0.0006110572,0.0003979943,0.0005778014,0.001339043],"category_scores_gemma":[0.003211252,0.0002504813,0.0003939859,0.000784774,0.0004265523,0.0001597045,0.0006234498,0.0006808077,0.0003846819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001643082,"about_ca_system_score_gemma":0.0002751492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002052567,"about_ca_topic_score_gemma":0.004219643,"domain_scores_codex":[0.9994482,0.0002319027,0.00003008544,0.0001560866,0.00006970914,0.00006388785],"domain_scores_gemma":[0.9988862,0.0005724346,0.0001716146,0.0002249904,0.00006004984,0.00008483566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003660914,0.0004040704,0.6153386,0.000194238,0.0009511249,0.002727724,0.0007003224,0.005830251,0.2497416,0.003382182,0.002087455,0.1149816],"study_design_scores_gemma":[0.000612649,0.001587046,0.9360194,0.0000843236,0.0008502124,0.006189614,0.0002312178,0.01656591,0.02294479,0.007530676,0.007305454,0.00007878615],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9868047,0.000709976,0.01108117,0.0001517063,0.00001853449,0.00003883412,0.0003500201,0.00006510875,0.000779836],"genre_scores_gemma":[0.9924319,0.0002159721,0.006510783,0.00008901438,0.00002193677,0.00002881046,0.0003247077,0.00001116123,0.0003656567],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002052567,"threshold_uncertainty_score":0.00679338,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2040727546","doi":"10.1038/gene.2009.90","title":"The type I diabetes association of the IL2RA locus","year":2009,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University and Génome Québec Innovation Centre; Montreal Children's Hospital","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Diabetes Canada; Canadian Institutes of Health Research; Genome Canada; Broad Institute; Juvenile Diabetes Research Foundation International","keywords":"Biology; Single-nucleotide polymorphism; Genetics; Locus (genetics); Haplotype; Minor allele frequency; SNP; Genotyping; Allele; Tag SNP; Genotype; Genetic association; Gene","authors":[{"name":"Hui‐Qi Qu","is_ca":true},{"name":"Jonathan P. Bradfield","is_ca":false},{"name":"Alexandre Bélisle","is_ca":true},{"name":"Struan F.A. Grant","is_ca":false},{"name":"Håkon Håkonarson","is_ca":false},{"name":"Constantin Polychronakos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006899446625462428,"gpt":0.2079753105427018,"spread":0.2010758639172394,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003174101,0.0005720325,0.0002536531,0.0005884868,0.0002999247,0.0005801763,0.0002398014,0.0005921859,0.004859312],"category_scores_gemma":[0.000604146,0.0001827093,0.0004759101,0.0004245174,0.0002653143,0.0001263844,0.0003051636,0.000892184,0.0005331974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000155496,"about_ca_system_score_gemma":0.0001411792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005830089,"about_ca_topic_score_gemma":0.0005367039,"domain_scores_codex":[0.9996108,0.0001181826,0.00002850939,0.0001227478,0.00005441142,0.00006527247],"domain_scores_gemma":[0.9990731,0.000305856,0.0002487222,0.0001168642,0.00005579355,0.000199669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.007347617,0.0002063834,0.2702612,0.0001146166,0.0004830546,0.005149306,0.0002229783,0.0004883191,0.6872401,0.002021126,0.001359092,0.02510617],"study_design_scores_gemma":[0.0002823723,0.000553496,0.9103656,0.0001271243,0.000446145,0.0240609,0.0002691124,0.00133557,0.04999581,0.001833528,0.01068739,0.00004293512],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909287,0.00209466,0.002377137,0.0004676913,0.0002052557,0.000006596875,0.0005345274,0.00005745817,0.003327897],"genre_scores_gemma":[0.9976441,0.0002367397,0.0006689001,0.0001180442,0.0001022963,0.000004883893,0.0001774208,0.00001674988,0.00103084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004859312,"threshold_uncertainty_score":0.01625597,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057969646","doi":"10.1038/sj.gene.6363911","title":"Segregation of HLA/TNF region is linked to leprosy clinical spectrum in families displaying mixed leprosy subtypes","year":2003,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Leprosy Research and Treatment","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Leprosy; Lepromatous leprosy; Biology; Immunology; Human leukocyte antigen; Disease; Haplotype; Mycobacterium leprae; Genetic linkage; Pathogenesis; Genetics; Allele; Medicine; Antigen; Gene; Pathology","authors":[{"name":"Marcelo Távora Mira","is_ca":true},{"name":"Alexandre Alcaïs","is_ca":false},{"name":"Tania Di Pietrantonio","is_ca":true},{"name":"Nguyen Van Thuc","is_ca":false},{"name":"Mai Chi Phuong","is_ca":false},{"name":"Laurent Abel","is_ca":false},{"name":"Erwin Schurr","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06025774853986444,"gpt":0.3479026162569378,"spread":0.2876448677170734,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004099589,0.0007018406,0.000469942,0.001787378,0.001179855,0.0006380028,0.0005477719,0.0006559823,0.006629157],"category_scores_gemma":[0.001801222,0.0003907886,0.00038368,0.0008413607,0.0005511191,0.0003290372,0.0005546274,0.0005236801,0.000533778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002526476,"about_ca_system_score_gemma":0.0002079852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001962734,"about_ca_topic_score_gemma":0.00111676,"domain_scores_codex":[0.9993516,0.0001810278,0.00008361782,0.0001483572,0.00007937082,0.0001560638],"domain_scores_gemma":[0.9983243,0.0005914246,0.0005158217,0.00008410437,0.0001104441,0.0003739567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006118421,0.0004282508,0.8490441,0.00004989696,0.0001921432,0.02229462,0.002184444,0.0002198662,0.112914,0.0004313464,0.0002071219,0.005915908],"study_design_scores_gemma":[0.0000856064,0.0005940432,0.9474466,0.00003324093,0.0001285926,0.04575163,0.001241328,0.0005716662,0.003533292,0.000209656,0.0003839684,0.00002023021],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995303,0.00005568759,0.00007556349,0.00001641055,0.000001918388,0.000002667153,0.00004509904,0.000003453462,0.000268949],"genre_scores_gemma":[0.9996467,0.00002160836,0.00008326646,0.00001007036,0.000005762396,0.000003032226,0.00004811406,0.000004437705,0.000177131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006629157,"threshold_uncertainty_score":0.0221768,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2794951237","doi":"10.1038/s41435-018-0015-2","title":"Genetic variants and pathways implicated in a pediatric inflammatory bowel disease cohort","year":2018,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Dalhousie University; Hospital for Sick Children; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; National Institute of Mental Health; National Institutes of Health; Crohn's and Colitis Foundation","keywords":"Genome-wide association study; Biology; NOD2; Inflammatory bowel disease; Exome sequencing; Exome; Ulcerative colitis; Disease; Genetics; Genetic association; Genetic architecture; Single-nucleotide polymorphism; Gene; Genetic variation; Genotype; Mutation; Immune system; Phenotype; Medicine; Internal medicine","authors":[{"name":"Kelly Shaw","is_ca":false},{"name":"David J. Cutler","is_ca":false},{"name":"David T. Okou","is_ca":false},{"name":"Anne Dodd","is_ca":false},{"name":"Bruce J. Aronow","is_ca":false},{"name":"Yael Haberman","is_ca":false},{"name":"Christine Stevens","is_ca":false},{"name":"Thomas D. Walters","is_ca":true},{"name":"Anne M. Griffiths","is_ca":true},{"name":"Robert N. Baldassano","is_ca":false},{"name":"Joshua D. Noe","is_ca":false},{"name":"Jeffrey S. Hyams","is_ca":false},{"name":"Wallace Crandall","is_ca":false},{"name":"Barbara S. Kirschner","is_ca":false},{"name":"Melvin B. Heyman","is_ca":false},{"name":"Scott B. Snapper","is_ca":false},{"name":"Stephen L. Guthery","is_ca":false},{"name":"Marla C. Dubinsky","is_ca":false},{"name":"Jason M. Shapiro","is_ca":false},{"name":"Anthony Otley","is_ca":true},{"name":"Mark J. Daly","is_ca":false},{"name":"Lee A. Denson","is_ca":false},{"name":"Subra Kugathasan","is_ca":false},{"name":"Michael E. Zwick","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007069592702107339,"gpt":0.2148298863625784,"spread":0.207760293660471,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004623377,0.0003439819,0.0004878485,0.0007603535,0.000659236,0.0006221916,0.0002524355,0.0003196531,0.001875414],"category_scores_gemma":[0.001954065,0.0001986269,0.0004175792,0.00158952,0.0002692455,0.00020604,0.0006427891,0.0004741259,0.0002022628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002942841,"about_ca_system_score_gemma":0.0004450059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007350195,"about_ca_topic_score_gemma":0.005638119,"domain_scores_codex":[0.9995241,0.0000783242,0.00003769573,0.0001853401,0.0001050119,0.00006958809],"domain_scores_gemma":[0.9994667,0.0001310495,0.0002029299,0.00006690586,0.00005327164,0.00007918051],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004761484,0.00003669971,0.9858403,0.00002835223,0.0001856127,0.001411836,0.0002632326,0.0005172403,0.004191377,0.0002503659,0.0006467301,0.006152045],"study_design_scores_gemma":[0.0000267815,0.00008682247,0.9937326,0.00001659902,0.0001492224,0.002811855,0.000247634,0.0003976621,0.0005969843,0.0001830897,0.001743189,0.000007667549],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996995,0.0003283671,0.0003575217,0.00005517003,0.000004642308,0.000009311745,0.001888739,0.00001081488,0.0003504632],"genre_scores_gemma":[0.9957085,0.000524123,0.0008543113,0.00003922912,0.00000941621,0.00003154446,0.002607035,0.00001816196,0.0002076773],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007350195,"threshold_uncertainty_score":0.01461482,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011043815","doi":"10.1038/gene.2008.57","title":"MAST3: a novel IBD risk factor that modulates TLR4 signaling","year":2008,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital; Université de Montréal; Montreal Heart Institute","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases","keywords":"Biology; Single-nucleotide polymorphism; Genetics; SNP; International HapMap Project; Genome-wide association study; Linkage disequilibrium; Gene; Inflammatory bowel disease; Immunology; Disease; Genotype","authors":[{"name":"Catherine Labbé","is_ca":true},{"name":"Philippe Goyette","is_ca":true},{"name":"Christine Lefebvre","is_ca":true},{"name":"Christine Stevens","is_ca":false},{"name":"T. Green","is_ca":false},{"name":"Marcela K Tello-Ruiz","is_ca":false},{"name":"Zhifang Cao","is_ca":false},{"name":"Aimee Landry","is_ca":false},{"name":"Joanne M. Stempak","is_ca":true},{"name":"Vito Annese","is_ca":false},{"name":"Anna Latiano","is_ca":false},{"name":"Steven R. Brant","is_ca":false},{"name":"Richard H. Duerr","is_ca":false},{"name":"Kent D. Taylor","is_ca":false},{"name":"J H Cho","is_ca":false},{"name":"A.H. Steinhart","is_ca":true},{"name":"Mark J. Daly","is_ca":false},{"name":"Mark S. Silverberg","is_ca":true},{"name":"Ramnik J. Xavier","is_ca":false},{"name":"John D. Rioux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0321159988054793,"gpt":0.2585399930962271,"spread":0.2264239942907478,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001179469,0.0003487121,0.0002041673,0.0002134854,0.0002377683,0.000266259,0.0002038668,0.0005625099,0.001906215],"category_scores_gemma":[0.0002095304,0.0001266911,0.0002949026,0.0001947101,0.0001418683,0.0001274025,0.0001729387,0.0004317476,0.0003617271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003175772,"about_ca_system_score_gemma":0.0001558321,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004665377,"about_ca_topic_score_gemma":0.0004704157,"domain_scores_codex":[0.9999238,0.00001523765,0.000005333899,0.00001637341,0.00001853904,0.00002058237],"domain_scores_gemma":[0.9999223,0.00001211727,0.00002957478,0.000007117639,0.000006667135,0.00002227652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001308037,0.00007094665,0.01164152,0.00006097993,0.00004052122,0.005349752,0.00002746888,0.0001519393,0.972996,0.0003274922,0.0006901346,0.007335349],"study_design_scores_gemma":[0.000595283,0.001404046,0.2493792,0.00003865604,0.0003446515,0.0753298,0.0002008779,0.005842964,0.647764,0.001311808,0.01772854,0.00006019563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939119,0.001584278,0.00186856,0.0004501172,0.00005786565,0.00002265256,0.0004880904,0.00009186983,0.001524793],"genre_scores_gemma":[0.9968395,0.0004103307,0.001041161,0.0001284706,0.00003545349,0.0000115055,0.0004486309,0.00001322962,0.00107179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001906215,"threshold_uncertainty_score":0.006376922,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020958278","doi":"10.1038/gene.2009.87","title":"rs2476601 T allele (R620W) defines high-risk PTPN22 type I diabetes-associated haplotypes with preliminary evidence for an additional protective haplotype","year":2009,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"PTPN22; Biology; Haplotype; Single-nucleotide polymorphism; Genetics; Allele; Locus (genetics); SNP; Type 1 diabetes; Linkage disequilibrium; Genotype; Diabetes mellitus; Gene; Endocrinology","authors":[{"name":"Andrea K. Steck","is_ca":false},{"name":"Erin E. Baschal","is_ca":false},{"name":"Jean Jasinski","is_ca":false},{"name":"Bernhard O. Boehm","is_ca":false},{"name":"Nunzio Bottini","is_ca":false},{"name":"Patrick Concannon","is_ca":false},{"name":"Cécile Julier","is_ca":false},{"name":"G. Morahan","is_ca":false},{"name":"Janelle A. Noble","is_ca":false},{"name":"Constantin Polychronakos","is_ca":true},{"name":"Jin‐Xiong She","is_ca":false},{"name":"George S. Eisenbarth","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0170834108561734,"gpt":0.2456383467553804,"spread":0.228554935899207,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004933954,0.0007279155,0.0007098551,0.001162669,0.0005154351,0.0004299507,0.0005072063,0.001047529,0.007795783],"category_scores_gemma":[0.001634335,0.0002834101,0.0006213149,0.0009436265,0.0004473758,0.0003026939,0.0004481554,0.0006908134,0.001038479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001132025,"about_ca_system_score_gemma":0.0001378687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007694685,"about_ca_topic_score_gemma":0.0009423619,"domain_scores_codex":[0.99945,0.0001461104,0.00009015922,0.000172581,0.00005634175,0.00008477207],"domain_scores_gemma":[0.9987381,0.0003694807,0.0003546027,0.0001550135,0.00009128576,0.0002915567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01017529,0.0007540103,0.3729562,0.0001515168,0.000931773,0.00450619,0.0009010467,0.0005670335,0.5884233,0.001182665,0.0008734493,0.01857753],"study_design_scores_gemma":[0.0007793331,0.002018051,0.9482604,0.00007089783,0.0008911067,0.01466534,0.0004012817,0.002454857,0.02535261,0.002356371,0.00266543,0.00008437299],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977678,0.0001393596,0.00088768,0.00006529762,0.00001949067,0.00001811533,0.0002512457,0.00001960633,0.0008314639],"genre_scores_gemma":[0.9989466,0.00002631631,0.0004725755,0.00004477622,0.00002294947,0.00001151366,0.0001986746,0.00001690078,0.0002595977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007795783,"threshold_uncertainty_score":0.02607948,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}