{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":33,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":33,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"de174177c734","filters":{"venue":"Gut Pathogens"}},"results":[{"id":"W2024392981","doi":"10.1186/1757-4749-1-6","title":"A randomized, double-blind, placebo-controlled pilot study of a probiotic in emotional symptoms of chronic fatigue syndrome","year":2009,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Fibromyalgia and Chronic Fatigue Syndrome Research","field":"Medicine","cited_by":572,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Regent Park Community Health Centre; START Clinic; Women's College Hospital; University of Toronto","funders":"","keywords":"Chronic fatigue syndrome; Anxiety; Medicine; Probiotic; Mood; Placebo; Chronic fatigue; Depression (economics); Internal medicine; Randomized controlled trial; Lactobacillus casei; Psychiatry; Etiology; Physical therapy; Biology; Pathology; Alternative medicine","authors":[{"name":"A. Venket Rao","is_ca":true},{"name":"Alison C. Bested","is_ca":true},{"name":"Tracey M Beaulne","is_ca":true},{"name":"Martin A. Katzman","is_ca":true},{"name":"Christina Iorio","is_ca":true},{"name":"John M. Berardi","is_ca":false},{"name":"Alan Logan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04808087798564649,"gpt":0.3207388051514246,"spread":0.2726579271657781,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001543813,0.001363663,0.004061638,0.0007808678,0.001153111,0.0007659665,0.000972613,0.002735755,0.007453931],"category_scores_gemma":[0.002023294,0.000926915,0.001196797,0.0005524018,0.0016283,0.001059888,0.0006295257,0.002423761,0.0008875731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000437633,"about_ca_system_score_gemma":0.001642384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001417911,"about_ca_topic_score_gemma":0.002368864,"domain_scores_codex":[0.9993485,0.0002797254,0.00007420055,0.0001042674,0.00005334556,0.0001398992],"domain_scores_gemma":[0.9986199,0.0004017708,0.0001391228,0.0001154021,0.0001194585,0.0006042952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.9585043,0.03070713,0.0002444607,0.0003814846,0.0002550992,0.0000440968,0.00005487501,0.00007716155,0.002988087,0.00005168908,0.0002075216,0.006484101],"study_design_scores_gemma":[0.8054067,0.1922975,0.001448753,0.00001603965,0.0001440002,0.00001265297,0.00002587762,0.0001082009,0.0002540181,0.00004239805,0.0002339604,0.000009718981],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879238,0.001632903,0.000423403,0.00051452,0.0006742147,0.00722567,0.0005414379,0.00008605153,0.000977905],"genre_scores_gemma":[0.9783198,0.002085631,0.002190753,0.001307126,0.0006801734,0.01219734,0.0006023411,0.00001631637,0.002600638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007453931,"threshold_uncertainty_score":0.02493584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154509583","doi":"10.1186/1757-4749-3-1","title":"Acne vulgaris, probiotics and the gut-brain-skin axis - back to the future?","year":2011,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Acne and Rosacea Treatments and Effects","field":"Medicine","cited_by":291,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Regent Park Community Health Centre","funders":"","keywords":"Acne; Medicine; Gut–brain axis; Gut flora; Mood; Anxiety; Dermatology; Immunology; Psychiatry","authors":[{"name":"Whitney P. Bowe","is_ca":false},{"name":"Alan Logan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01570287768994794,"gpt":0.2326478603432588,"spread":0.2169449826533109,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009407502,0.0002335849,0.0005700231,0.0005795131,0.0007906473,0.002832625,0.0003312467,0.00264716,0.004665461],"category_scores_gemma":[0.001087921,0.0001062026,0.0002328631,0.0006279309,0.002725488,0.003758346,0.0007326692,0.002992782,0.0005905908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008030075,"about_ca_system_score_gemma":0.0010205,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001715423,"about_ca_topic_score_gemma":0.003542128,"domain_scores_codex":[0.9997793,0.0001051302,0.00001551749,0.00002664294,0.00003418517,0.00003930942],"domain_scores_gemma":[0.9994645,0.000254559,0.00005381313,0.00002375958,0.0001091581,0.00009426556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009358191,0.0004283767,0.007983848,0.003079016,0.0001107092,0.002767529,0.003222823,0.0002056821,0.005280598,0.1233564,0.08718714,0.7654421],"study_design_scores_gemma":[0.00006803284,0.0006044215,0.01112466,0.003584674,0.0001255044,0.004416932,0.01180799,0.0002438191,0.001224196,0.08688374,0.879828,0.00008797288],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005450183,0.8640863,0.0002648757,0.1196057,0.004271844,0.000003783647,0.00002979903,0.00001550795,0.006271935],"genre_scores_gemma":[0.09427193,0.8450224,0.0007391923,0.0383556,0.01379454,0.00001787322,0.00003152839,0.00001300234,0.007754061],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004665461,"threshold_uncertainty_score":0.01560754,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2219964339","doi":"10.1186/s13099-015-0076-y","title":"Animal models to study acute and chronic intestinal inflammation in mammals","year":2015,"lang":"en","type":"review","venue":"Gut Pathogens","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":209,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Alberta Innovates; Alberta Innovates Bio Solutions; Alberta Livestock and Meat Agency; University of Alberta","keywords":"Inflammation; Disease; Medicine; Animal model; Immunology; Animal studies; Human disease; Biology; Pathology; Internal medicine","authors":[{"name":"Janelle A. Jiminez","is_ca":true},{"name":"Trina C. Uwiera","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true},{"name":"Richard R. E. Uwiera","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0825898218187805,"gpt":0.3510946449352565,"spread":0.268504823116476,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002421167,0.001354903,0.00165155,0.002712763,0.0007094017,0.001487008,0.001415055,0.002168497,0.007355457],"category_scores_gemma":[0.001538411,0.0005916511,0.001175362,0.001350466,0.0009943808,0.001366073,0.001356142,0.003403892,0.003144742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006899678,"about_ca_system_score_gemma":0.001195589,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008601844,"about_ca_topic_score_gemma":0.002066632,"domain_scores_codex":[0.998168,0.0005293185,0.0002817859,0.0002212415,0.0006238168,0.0001757736],"domain_scores_gemma":[0.9985833,0.0003887489,0.0003847238,0.0002159968,0.0002581617,0.0001690102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002330468,0.00277041,0.006548766,0.02190228,0.0006599536,0.003175563,0.0007218503,0.002645672,0.7382097,0.03282629,0.04059441,0.1476147],"study_design_scores_gemma":[0.0004988614,0.01021357,0.01511204,0.006482234,0.001019227,0.0107537,0.0008051122,0.002403677,0.1479292,0.009520863,0.7950271,0.0002345531],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1389786,0.4556857,0.2469384,0.007632521,0.008241856,0.01219568,0.01818814,0.003974098,0.1081652],"genre_scores_gemma":[0.1906168,0.4622623,0.2640818,0.005458913,0.001399748,0.01630459,0.0176566,0.0005051441,0.04171398],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.007355457,"threshold_uncertainty_score":0.02460647,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162259618","doi":"10.1186/1757-4749-1-2","title":"Campylobacter jejuni induces transcellular translocation of commensal bacteria via lipid rafts","year":2009,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":135,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Crohn's and Colitis Foundation; Crohn's and Colitis Foundation of Canada; Advanced Foods and Materials Network","keywords":"Campylobacter jejuni; Microbiology; Chromosomal translocation; Biology; Campylobacter; Lipid raft; Intestinal permeability; Internalization; Paracellular transport; Intestinal epithelium; Bacteria; Mesenteric lymph nodes; Intestinal mucosa; Immunology; Cell biology; Epithelium; Spleen; Cell; Signal transduction; Medicine; Biochemistry","authors":[{"name":"Lisa D. Kalischuk","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true},{"name":"André G. Buret","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0224018841552593,"gpt":0.2240315181367907,"spread":0.2016296339815314,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001257367,0.0003926361,0.0001623124,0.0001895751,0.0001636745,0.0002039496,0.0001645643,0.000381429,0.001500818],"category_scores_gemma":[0.000114927,0.0001290009,0.0002739475,0.00008836197,0.0002185863,0.0001770779,0.0003656393,0.0004915799,0.0004294479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004595836,"about_ca_system_score_gemma":0.0002348978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008409707,"about_ca_topic_score_gemma":0.001295297,"domain_scores_codex":[0.9998441,0.00001995645,0.000008624525,0.00002606891,0.0000342216,0.00006710125],"domain_scores_gemma":[0.9999011,0.00002414861,0.0000214755,0.00001381135,0.0000162601,0.00002325162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001302124,0.00003995688,0.000168889,0.00005452902,0.000002368104,0.00007705108,0.0000132225,0.00001930568,0.9989266,0.00002201004,0.00003923101,0.0005066526],"study_design_scores_gemma":[0.00004317757,0.0009804317,0.01469697,0.00002564801,0.00001507903,0.0005194124,0.00009515489,0.0008834525,0.9803315,0.00007970067,0.002320893,0.000008669253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963475,0.0008979051,0.0007910719,0.0001472083,0.00002925568,0.00004055494,0.0001973985,0.00006150904,0.001487703],"genre_scores_gemma":[0.9961023,0.0005141599,0.001107849,0.000097498,0.000007161163,0.00004930941,0.0003980362,0.00001262668,0.001711002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001500818,"threshold_uncertainty_score":0.005020738,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146186198","doi":"10.1186/1757-4749-5-5","title":"Intestinal microbiota, probiotics and mental health: from Metchnikoff to modern advances: Part I – autointoxication revisited","year":2013,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"B.C. Women's Hospital & Health Centre","funders":"","keywords":"Flourishing; Context (archaeology); Mental health; Gut flora; Depression (economics); Anxiety; Medicine; Environmental ethics; Psychiatry; Psychology; Biology; Immunology; Psychotherapist","authors":[{"name":"Alison C. Bested","is_ca":true},{"name":"Alan Logan","is_ca":false},{"name":"Eva M Selhub","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009455872262360897,"gpt":0.2539939596033601,"spread":0.2445380873409992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002859057,0.0005969523,0.0009329448,0.002525159,0.001207476,0.004268607,0.0008041518,0.003127568,0.001919831],"category_scores_gemma":[0.003339758,0.0002628178,0.0003370206,0.001812335,0.01229323,0.007579586,0.002638747,0.005708505,0.0005151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002206057,"about_ca_system_score_gemma":0.001697654,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00129643,"about_ca_topic_score_gemma":0.001829202,"domain_scores_codex":[0.9991794,0.0003613926,0.00009175405,0.0001014365,0.0001890851,0.00007702305],"domain_scores_gemma":[0.9976147,0.00173176,0.000244034,0.00009545185,0.0002237586,0.00009016161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000307082,0.0001365017,0.00353416,0.00698723,0.0001028913,0.001416562,0.009185176,0.0005456912,0.003682874,0.5407448,0.05638022,0.3769769],"study_design_scores_gemma":[0.00001640713,0.0002423794,0.005625342,0.004659729,0.00005314502,0.003269988,0.005586123,0.0003336024,0.001173691,0.2573304,0.7216173,0.00009194009],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002456203,0.9141173,0.001687425,0.07269628,0.005237495,0.000006011675,0.00001572139,0.00001066385,0.00377287],"genre_scores_gemma":[0.04259592,0.9181397,0.001832249,0.0185958,0.01627013,0.00002336925,0.00002235159,0.00002061965,0.002499834],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004268607,"threshold_uncertainty_score":0.01600611,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118613385","doi":"10.1186/1757-4749-5-3","title":"Intestinal microbiota, probiotics and mental health: from Metchnikoff to modern advances: Part II – contemporary contextual research","year":2013,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"B.C. Women's Hospital & Health Centre","funders":"","keywords":"Context (archaeology); Intestinal permeability; Small intestinal bacterial overgrowth; Anxiety; Mental health; Depression (economics); Medicine; Mood; Medical microbiology; Gut flora; Psychiatry; Immunology; Biology; Irritable bowel syndrome","authors":[{"name":"Alison C. Bested","is_ca":true},{"name":"Alan Logan","is_ca":false},{"name":"Eva M Selhub","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0458947226724457,"gpt":0.3249868318542418,"spread":0.2790921091817961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00167532,0.0004450663,0.0009294301,0.002772293,0.0008034544,0.003361216,0.0005744461,0.001501466,0.00224617],"category_scores_gemma":[0.002233283,0.0002302436,0.0002638403,0.002558956,0.009500272,0.004520097,0.002255307,0.002436949,0.0002993248],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002347696,"about_ca_system_score_gemma":0.001509875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002365235,"about_ca_topic_score_gemma":0.003096168,"domain_scores_codex":[0.9993224,0.0003213257,0.00006359873,0.000103278,0.0001291219,0.00006022963],"domain_scores_gemma":[0.9989053,0.0007379836,0.00013844,0.00005971269,0.0001024954,0.00005603243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003428299,0.0001729512,0.007836353,0.009182031,0.000154457,0.0009520955,0.008018454,0.0007443647,0.002845292,0.3789859,0.01491435,0.575851],"study_design_scores_gemma":[0.00002674135,0.0002886241,0.03664877,0.01050211,0.0001299905,0.004175322,0.01175727,0.0005119994,0.001110513,0.3234124,0.6113108,0.0001255482],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005748791,0.9627258,0.001433891,0.02423832,0.0009102785,0.000006606265,0.00003198454,0.000006781839,0.004897573],"genre_scores_gemma":[0.06868263,0.9199471,0.001338656,0.00556408,0.00327064,0.00002405595,0.0000336988,0.000009187164,0.001130001],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003361216,"threshold_uncertainty_score":0.01703376,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141351365","doi":"10.1186/1757-4749-5-26","title":"Persistent gut barrier damage and commensal bacterial influx following eradication of Giardia infection in mice","year":2013,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Taiwan University","keywords":"Microbiology; Giardia lamblia; Biology; Intestinal mucosa; Barrier function; Giardia; Enterocyte; Myeloperoxidase; Bacteria; Inflammation; Small intestine; Immunology; Medicine; Internal medicine","authors":[{"name":"Tzu-Ling Chen","is_ca":false},{"name":"Shin Chen","is_ca":false},{"name":"Hsiu-Wei Wu","is_ca":false},{"name":"Tsung‐Chun Lee","is_ca":false},{"name":"Yen‐Zhen Lu","is_ca":false},{"name":"Li‐Ling Wu","is_ca":false},{"name":"Yen‐Hsuan Ni","is_ca":false},{"name":"Chin‐Hung Sun","is_ca":false},{"name":"Wei‐Hsuan Yu","is_ca":false},{"name":"André G. Buret","is_ca":true},{"name":"Linda Chia‐Hui Yu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008738517032717576,"gpt":0.2307909348011356,"spread":0.222052417768418,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004988722,0.0008988202,0.0006785157,0.001363373,0.0003691053,0.0006337234,0.0005334858,0.00131629,0.001574746],"category_scores_gemma":[0.0002209794,0.000543955,0.0006713197,0.0003930921,0.0007888791,0.0007314392,0.0004331566,0.002671323,0.0007308961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006001511,"about_ca_system_score_gemma":0.0003715669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006642916,"about_ca_topic_score_gemma":0.001022662,"domain_scores_codex":[0.9995313,0.00006156323,0.00004069399,0.0001252662,0.00008362943,0.0001575491],"domain_scores_gemma":[0.9993914,0.00004842502,0.0002493417,0.00005796883,0.00004679694,0.000205926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001553837,0.000474507,0.00123613,0.0001093607,0.00001974862,0.0001366619,0.00008430291,0.00008280672,0.9943871,0.00009108949,0.0001210842,0.001703214],"study_design_scores_gemma":[0.0003809237,0.01358498,0.06342747,0.0001172858,0.0001818498,0.00145166,0.0003132147,0.002339557,0.9136356,0.0003557635,0.004166423,0.00004526793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914153,0.003305007,0.001796439,0.0003262931,0.00005718096,0.00008244751,0.001296625,0.0002788121,0.001441812],"genre_scores_gemma":[0.9874874,0.002148436,0.003400231,0.0003547204,0.00004494389,0.0002877263,0.001674018,0.0000848166,0.004517676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001574746,"threshold_uncertainty_score":0.005268097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164172900","doi":"10.1186/1757-4749-1-15","title":"Mycobacterium avium subspecies paratuberculosis, Crohn's disease and the Doomsday scenario","year":2009,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Disease; Subspecies; Mycobacterium; Crohn's disease; Outbreak; Incidence (geometry); Biology; Immunology; Medicine; Microbiology; Zoology; Virology; Bacteria; Pathology; Genetics","authors":[{"name":"John Hermon-Taylor","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01343445128734189,"gpt":0.2619276513208252,"spread":0.2484932000334833,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001785582,0.0004336761,0.000481627,0.001053803,0.002064609,0.002607141,0.0005642152,0.005511976,0.006145162],"category_scores_gemma":[0.004029352,0.000184876,0.0003724947,0.0007676131,0.003356602,0.004233774,0.00266314,0.005472816,0.0010524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0018602,"about_ca_system_score_gemma":0.002326964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007070705,"about_ca_topic_score_gemma":0.007491978,"domain_scores_codex":[0.9989963,0.0003564599,0.00006096127,0.000146666,0.0001742391,0.0002653505],"domain_scores_gemma":[0.9984453,0.0004317273,0.0001868148,0.00003867434,0.000173671,0.0007237619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005252233,0.0002865778,0.02834225,0.001870166,0.0001081904,0.02041868,0.004552682,0.00038077,0.001035856,0.1860538,0.512437,0.2439889],"study_design_scores_gemma":[0.00005203729,0.0002700497,0.01786438,0.00323511,0.00005295342,0.02956117,0.009022611,0.0002192434,0.00009003593,0.1327049,0.8068523,0.00007515756],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.01607054,0.4436097,0.0006138479,0.4949156,0.01050453,0.00001933358,0.0001655747,0.00003054167,0.03407028],"genre_scores_gemma":[0.2415327,0.5748875,0.001704517,0.1214088,0.0393451,0.00008510573,0.0003704179,0.00003220345,0.02063374],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007070705,"threshold_uncertainty_score":0.02055758,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146384835","doi":"10.1186/1757-4749-5-4","title":"Intestinal microbiota, probiotics and mental health: from Metchnikoff to modern advances: part III – convergence toward clinical trials","year":2013,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"B.C. Women's Hospital & Health Centre","funders":"","keywords":"Microbiome; Mood; Mental health; Medicine; Anxiety; Clinical trial; Gut–brain axis; Psychiatry; Gut flora; Psychology; Bioinformatics; Biology; Pathology; Immunology","authors":[{"name":"Alison C. Bested","is_ca":true},{"name":"Alan Logan","is_ca":false},{"name":"Eva M Selhub","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07096074431925714,"gpt":0.3760907355686961,"spread":0.305129991249439,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02219231,0.0007890993,0.00324565,0.001703588,0.0005427276,0.005716362,0.0009760304,0.00275658,0.004281675],"category_scores_gemma":[0.02715041,0.0003800566,0.001227786,0.001545062,0.003458281,0.005177715,0.003047073,0.005015241,0.0009804202],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001965763,"about_ca_system_score_gemma":0.003567328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007032282,"about_ca_topic_score_gemma":0.0007641059,"domain_scores_codex":[0.9958572,0.00235553,0.0005239799,0.0003152131,0.0007033633,0.0002446197],"domain_scores_gemma":[0.9796418,0.01335472,0.001663042,0.001543408,0.002781412,0.00101563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003847439,0.0004693194,0.001839148,0.007464098,0.0005437558,0.0001043045,0.0001772696,0.0003431404,0.002934666,0.02475445,0.01616631,0.9413561],"study_design_scores_gemma":[0.005450681,0.01497834,0.02343619,0.08268254,0.002568471,0.001355447,0.001671171,0.002427096,0.00706252,0.1431002,0.7149726,0.0002948827],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003473168,0.9549478,0.001622686,0.0350909,0.002395441,0.00009475658,0.00006922187,0.00002520064,0.00228087],"genre_scores_gemma":[0.05304982,0.8991894,0.007517677,0.02904347,0.008934535,0.0003092361,0.0001846189,0.00006694428,0.001704298],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02219231,"threshold_uncertainty_score":0.1173656,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2565110032","doi":"10.1186/s13099-016-0149-6","title":"Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice","year":2016,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta Hospital; University of Alberta; Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Innovates; Alberta Innovates Bio Solutions; General Mills","keywords":"Short-chain fatty acid; Resistant starch; Inflammation; Cecum; Citrobacter rodentium; Butyrate; Biology; Colitis; Microbiome; Gut flora; Microbiology; Fatty acid; Food science; Immunology; Starch; Biochemistry","authors":[{"name":"Janelle A. Jiminez","is_ca":true},{"name":"Trina C. Uwiera","is_ca":true},{"name":"D. Wade Abbott","is_ca":true},{"name":"Richard R. E. Uwiera","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01864045154338312,"gpt":0.2770466030889421,"spread":0.258406151545559,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004583375,0.001022912,0.0007366068,0.001398917,0.0003890916,0.0006436479,0.0004121271,0.001100469,0.00169115],"category_scores_gemma":[0.0002038526,0.0007226518,0.0009545438,0.0005868456,0.0007160651,0.0006974862,0.0004490401,0.00223466,0.0003538556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005260053,"about_ca_system_score_gemma":0.0004729304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001107374,"about_ca_topic_score_gemma":0.002074629,"domain_scores_codex":[0.9994593,0.00007193741,0.00005680741,0.000155047,0.00007940005,0.0001775094],"domain_scores_gemma":[0.9993451,0.00004565357,0.0002107671,0.00005524057,0.00004325684,0.0003000064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.01111252,0.003027373,0.002422782,0.0001724909,0.00007264122,0.0001390948,0.0001413385,0.0002340426,0.9788043,0.0001214122,0.0001385496,0.003613248],"study_design_scores_gemma":[0.00132231,0.06299482,0.08224902,0.0001382758,0.000549787,0.0006002599,0.0006247117,0.002999709,0.843133,0.0005382798,0.004741336,0.0001085225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963433,0.0009701621,0.0007171793,0.0001726604,0.00004657535,0.00008074266,0.001005532,0.00008375964,0.0005800677],"genre_scores_gemma":[0.9873868,0.001574453,0.003080585,0.0003845037,0.0000350795,0.0004676829,0.001432127,0.00006617011,0.005572713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00169115,"threshold_uncertainty_score":0.005657494,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154145747","doi":"10.1186/1757-4749-2-14","title":"Campylobacter jejuni induces transcytosis of commensal bacteria across the intestinal epithelium through M-like cells","year":2010,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Washington State University","keywords":"Transcytosis; Campylobacter jejuni; Microbiology; Enterocyte; Paracellular transport; Biology; Transcellular; Barrier function; Caco-2; Bacteria; Endocytosis; Cell; Cell biology; Small intestine; Biochemistry","authors":[{"name":"Lisa D. Kalischuk","is_ca":true},{"name":"Frances Leggett","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02856657742134876,"gpt":0.2577213102551429,"spread":0.2291547328337942,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001970166,0.0003137564,0.0002155082,0.0001454513,0.0001430848,0.0002337617,0.0002089154,0.0004628815,0.001245129],"category_scores_gemma":[0.0001643987,0.0001256026,0.0002834974,0.00008241342,0.000203137,0.0001605106,0.0003517019,0.0004629989,0.0005063255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003862729,"about_ca_system_score_gemma":0.0001839867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005476142,"about_ca_topic_score_gemma":0.0006983096,"domain_scores_codex":[0.9997942,0.00003593873,0.00001634733,0.00003155174,0.00004294655,0.00007911504],"domain_scores_gemma":[0.9998615,0.00003475787,0.0000266257,0.00002421774,0.00002128091,0.00003165096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00015625,0.00004816606,0.0002490805,0.00004704302,0.000002494166,0.00007885936,0.00002472705,0.00001834967,0.9986544,0.00002758523,0.00003709529,0.0006559023],"study_design_scores_gemma":[0.00004870061,0.00166523,0.01543594,0.00002293641,0.00001720117,0.0007315933,0.0001227017,0.00153329,0.9776088,0.0000587743,0.002747357,0.000007400001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957552,0.0006307702,0.001537876,0.00009628022,0.00002131027,0.00005025004,0.0001179052,0.00005386526,0.001736566],"genre_scores_gemma":[0.9960184,0.0002567504,0.001920025,0.0001023364,0.000007740602,0.00005508288,0.0002045703,0.00001125128,0.0014239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001245129,"threshold_uncertainty_score":0.004165411,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154059887","doi":"10.1186/1757-4749-5-8","title":"Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle","year":2013,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Alberta Innovates; Alberta Innovates Bio Solutions; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Advanced Foods and Materials Network","keywords":"Beef cattle; Feedlot; Biology; Antimicrobial; Bacteria; Livestock; Rumen; Animal science; Antibiotics; Veterinary medicine; Microbiology; Terminal restriction fragment length polymorphism; Food science; Biotechnology; Polymerase chain reaction; Restriction fragment length polymorphism; Medicine; Ecology; Genetics; Gene","authors":[{"name":"Kristen L Reti","is_ca":true},{"name":"Matthew C. Thomas","is_ca":true},{"name":"L. J. Yanke","is_ca":true},{"name":"L. Brent Selinger","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01227589147911359,"gpt":0.2151949434145292,"spread":0.2029190519354156,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003987111,0.000388429,0.0004234348,0.0003108656,0.000190729,0.0003820866,0.000155512,0.000308581,0.000999495],"category_scores_gemma":[0.0004446615,0.0001459626,0.0002304672,0.0002066265,0.0003269615,0.0001889979,0.0001978591,0.0005473058,0.0001453719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004365351,"about_ca_system_score_gemma":0.0003219533,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002114605,"about_ca_topic_score_gemma":0.003671661,"domain_scores_codex":[0.9995877,0.00009463237,0.00002445916,0.00009932095,0.0000956783,0.00009822854],"domain_scores_gemma":[0.9994771,0.000137863,0.000133896,0.00002212648,0.00008922358,0.0001398269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003601657,0.0003125289,0.003272985,0.00008215086,0.00001919816,0.00003076494,0.00006450241,0.00007172668,0.9890178,0.000007623125,0.00003355055,0.003485511],"study_design_scores_gemma":[0.0001049568,0.0376772,0.1046291,0.00003693588,0.0001624336,0.0001787881,0.0003665037,0.0009966389,0.8540896,0.00003524994,0.001694197,0.00002841387],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991366,0.0002742007,0.0001906543,0.00002715078,0.0000106782,0.00001498694,0.000180452,0.000009539406,0.0001556644],"genre_scores_gemma":[0.9964946,0.0003954215,0.001269791,0.0000896311,0.00001484457,0.00004427859,0.0005541666,0.00001017664,0.001127082],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002114605,"threshold_uncertainty_score":0.004204571,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2809686336","doi":"10.1186/s13099-018-0252-y","title":"N-Acetyl-glucosamine influences the biofilm formation of Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Cegep de Saint Hyacinthe; Université de Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Microbiology; Virulence; Escherichia coli; Mucin; Mucus; Bacteria; Biology; Fimbria; Microecology; Intestinal mucosa; Gene; Biochemistry","authors":[{"name":"Jean-Félix Sicard","is_ca":true},{"name":"Philippe Vogeleer","is_ca":true},{"name":"Guillaume Le Bihan","is_ca":true},{"name":"Yaindrys Rodríguez Olivera","is_ca":true},{"name":"Francis Beaudry","is_ca":true},{"name":"Mario Jacques","is_ca":true},{"name":"Josée Harel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01903007163515502,"gpt":0.2831772572967786,"spread":0.2641471856616236,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111041,0.0002524323,0.0002009858,0.0001179691,0.0001007426,0.0002610768,0.0001355691,0.0002066986,0.0004455937],"category_scores_gemma":[0.0001887562,0.00009204391,0.0001785173,0.00009903905,0.0001389448,0.0001148611,0.000203568,0.0003174004,0.0001055198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000214729,"about_ca_system_score_gemma":0.0002441874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00236526,"about_ca_topic_score_gemma":0.002272507,"domain_scores_codex":[0.9998116,0.00004601551,0.00001364384,0.00001788898,0.00006797955,0.00004301234],"domain_scores_gemma":[0.9998932,0.00001698192,0.00002646448,0.000006776129,0.00002484467,0.00003176561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009507468,0.00004385574,0.0001959594,0.00002588237,0.000003025605,0.00002175757,0.00001308219,0.0000236276,0.9989547,0.00001675834,0.00002232854,0.000584057],"study_design_scores_gemma":[0.00001925748,0.001007474,0.01831932,0.00001400927,0.00002193547,0.00007673685,0.0001000269,0.001602379,0.977394,0.00004438508,0.001388455,0.00001210872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998077,0.0007424674,0.0002393276,0.00006068637,0.00002315415,0.000009346508,0.00009011912,0.00001295238,0.0007448657],"genre_scores_gemma":[0.9977704,0.0003869179,0.0006187829,0.0000549353,0.000004714056,0.00001313363,0.00009997113,0.000006448546,0.001044652],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00236526,"threshold_uncertainty_score":0.004702926,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165349948","doi":"10.1186/1757-4749-3-14","title":"Non-therapeutic administration of a model antimicrobial growth promoter modulates intestinal immune responses","year":2011,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lethbridge College; University of Alberta; University of Lethbridge","funders":"Agriculture and Agri-Food Canada; Directorate for Biological Sciences; Alberta Innovates; Advanced Foods and Materials Network","keywords":"Citrobacter rodentium; Chlortetracycline; Immune system; Antibiotics; Biology; Microbiology; Immunology; Antimicrobial; Immunity; Feces; Medicine","authors":[{"name":"Estela Costa","is_ca":true},{"name":"Richard R. E. Uwiera","is_ca":true},{"name":"John P. Kastelic","is_ca":true},{"name":"L. Brent Selinger","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05540838037403305,"gpt":0.2434117951163766,"spread":0.1880034147423436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002106531,0.0003522769,0.000285525,0.0001793162,0.00007584572,0.0002349151,0.0002183122,0.0003138183,0.001242003],"category_scores_gemma":[0.0001989838,0.0000649564,0.0001686619,0.00009883018,0.0003088282,0.0001957805,0.000141692,0.0006998465,0.0002117503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002474404,"about_ca_system_score_gemma":0.0002498945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000163136,"about_ca_topic_score_gemma":0.0003120343,"domain_scores_codex":[0.9998114,0.00003666888,0.00001590535,0.00004517251,0.00005170249,0.00003930517],"domain_scores_gemma":[0.9997165,0.00007162114,0.00009954266,0.00003570957,0.00002693573,0.00004974222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003651443,0.0001371322,0.000168819,0.00006816165,0.000002710155,0.00002835012,0.00001014878,0.00006456302,0.9980341,0.00004413317,0.0000264127,0.001050425],"study_design_scores_gemma":[0.00003276816,0.003823637,0.001228144,0.00001362551,0.00001507131,0.0001099555,0.00002390452,0.0005615743,0.9929322,0.000026509,0.001229212,0.000003488683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942437,0.001493507,0.002786129,0.0001387626,0.0000635548,0.00006092835,0.0002183789,0.00008149694,0.000913571],"genre_scores_gemma":[0.9953102,0.0007441831,0.002429644,0.00005281023,0.00002529203,0.00007875849,0.000301631,0.0000136768,0.00104382],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001242003,"threshold_uncertainty_score":0.004154921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313339595","doi":"10.1186/s13099-022-00523-y","title":"Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer","year":2022,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Cegep Edouard Montpetit; Centre Hospitalier de l’Université de Montréal","funders":"Ministère de la Santé et des Services sociaux; Ministère de la Santé; Canadian Institutes of Health Research; Université de Montréal; Institute of Cancer Research; Institut Du Cancer de Montréal","keywords":"Bacteroides fragilis; Medical microbiology; Colorectal cancer; Medicine; Microbiology; Parasitology; Cancer; Bacteria; Bacteroides; Internal medicine; Biology; Antibiotics; Pathology; Genetics","authors":[{"name":"Manon Oliero","is_ca":true},{"name":"Roy Hajjar","is_ca":true},{"name":"Thibault Cuisiniere","is_ca":true},{"name":"Gabriela Fragoso","is_ca":true},{"name":"Annie Calvé","is_ca":true},{"name":"François Dagbert","is_ca":true},{"name":"Rasmy Loungnarath","is_ca":true},{"name":"Herawaty Sebajang","is_ca":true},{"name":"Frank Schwenter","is_ca":true},{"name":"Ramsès Wassef","is_ca":true},{"name":"Richard Ratelle","is_ca":true},{"name":"Éric De Broux","is_ca":true},{"name":"Carole Richard","is_ca":true},{"name":"Manuela M. Santos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004163086901539294,"gpt":0.2131040867078597,"spread":0.2089409998063204,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002252947,0.0002797484,0.0002724849,0.001095292,0.0006210941,0.0004250385,0.0002706706,0.0004556631,0.002595014],"category_scores_gemma":[0.0009814075,0.0001839139,0.0001707124,0.0009837736,0.0003267693,0.0002282685,0.000239288,0.0003411857,0.0002440005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007014848,"about_ca_system_score_gemma":0.0006069295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06611436,"about_ca_topic_score_gemma":0.06392005,"domain_scores_codex":[0.9997285,0.00003615828,0.00002420891,0.00006388724,0.0000688201,0.0000785127],"domain_scores_gemma":[0.9991867,0.00008046456,0.0003088072,0.00002533157,0.000173097,0.0002256282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006611013,0.00001574186,0.9985447,0.00001124004,0.000009367311,0.0001232194,0.00005071905,0.000008554767,0.0005215328,0.000003634251,0.00006422479,0.0005809633],"study_design_scores_gemma":[0.000002395122,0.00006251451,0.999167,0.000005682566,0.00001012634,0.0003794006,0.0001624872,0.00003740035,0.00005202582,0.000003600032,0.000115453,0.000002055805],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987733,0.0003610454,0.00003540544,0.00003674848,0.000005066101,0.0000107398,0.0002944117,0.000004984787,0.0004782913],"genre_scores_gemma":[0.9995804,0.00009504682,0.00004362763,0.00001643612,0.000004290836,0.000004305063,0.0001500943,8.070173e-7,0.0001049212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06611436,"threshold_uncertainty_score":0.1314591,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2576395569","doi":"10.1186/s13099-016-0152-y","title":"Influence of pCP1NetB ancillary genes on the virulence of Clostridium perfringens poultry necrotic enteritis strain CP1","year":2017,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Ministry of Education, India; Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; Monash University; Australian Government","keywords":"Virulence; Clostridium perfringens; Biology; Microbiology; Plasmid; Gene; Pathogenesis; Toxin; Virology; Wild type; Locus (genetics); Genetics; Mutant; Immunology; Bacteria","authors":[{"name":"Hongzhuan Zhou","is_ca":true},{"name":"Dion Lepp","is_ca":true},{"name":"Yanlong Pei","is_ca":true},{"name":"Mei Liu","is_ca":true},{"name":"Xianhua Yin","is_ca":true},{"name":"Rongcai Ma","is_ca":false},{"name":"John F. Prescott","is_ca":true},{"name":"Joshua Gong","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03704467972158931,"gpt":0.301776726530971,"spread":0.2647320468093817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001504272,0.0005421439,0.0002511178,0.0002351553,0.0001181271,0.0003032604,0.0002608252,0.0002186351,0.0008067564],"category_scores_gemma":[0.0002942398,0.0001256524,0.0001526475,0.0001668001,0.0002108861,0.0001165133,0.0002611144,0.0004162542,0.0002132246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004075203,"about_ca_system_score_gemma":0.0003313254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004297922,"about_ca_topic_score_gemma":0.004071282,"domain_scores_codex":[0.9997312,0.00006454096,0.00002690596,0.00003808385,0.00008790899,0.00005124371],"domain_scores_gemma":[0.9997165,0.0000722778,0.00007879258,0.00002360297,0.00003009179,0.0000788597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002430235,0.00007689005,0.0004645226,0.00003068367,0.000004660996,0.0001011819,0.00001735821,0.00008358523,0.998284,0.00002717619,0.000018387,0.0006484785],"study_design_scores_gemma":[0.00004146395,0.001625814,0.02720535,0.00002131721,0.00003364854,0.0008675334,0.0001429633,0.002390611,0.9658273,0.00002367595,0.00180379,0.0000165847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990747,0.0001744399,0.0002250153,0.00002171141,0.000008403857,0.00001095365,0.0001713503,0.000008851845,0.0003044982],"genre_scores_gemma":[0.9975379,0.0001902615,0.0006270699,0.00002128227,0.000003521097,0.0000138294,0.0006488168,0.0000159316,0.0009415139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004297922,"threshold_uncertainty_score":0.008545816,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3023734280","doi":"10.1186/s13099-020-00362-9","title":"Host responses to Clostridium perfringens challenge in a chicken model of chronic stress","year":2020,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia, Okanagan Campus; University of Alberta; Agriculture and Agri-Food Canada; University of British Columbia; Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development","funders":"Canadian Glycomics Network; Ontario Veterinary College, University of Guelph; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council","keywords":"Medical microbiology; Parasitology; Clostridium perfringens; Microbiology; Host (biology); Medicine; Immunology; Biology; Zoology; Pathology; Ecology; Bacteria","authors":[{"name":"Sarah J. M. Zaytsoff","is_ca":true},{"name":"Sarah M. Lyons","is_ca":true},{"name":"Alexander M. Garner","is_ca":true},{"name":"Richard R. E. Uwiera","is_ca":true},{"name":"Wesley F. Zandberg","is_ca":true},{"name":"D. Wade Abbott","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06396679835873187,"gpt":0.3119028772973741,"spread":0.2479360789386423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002182558,0.0006861652,0.0004273474,0.0004246526,0.0003115631,0.0004340665,0.0002026182,0.0005426386,0.0008589419],"category_scores_gemma":[0.0001362382,0.0002420661,0.0002835704,0.0001224881,0.0004996334,0.0002751749,0.0002922002,0.0008983848,0.0001605143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004495707,"about_ca_system_score_gemma":0.0003467803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001648035,"about_ca_topic_score_gemma":0.003290834,"domain_scores_codex":[0.999742,0.00004239185,0.000019323,0.00007377245,0.00004224575,0.00008033127],"domain_scores_gemma":[0.9997441,0.00001717916,0.00007440038,0.0000220364,0.00003597403,0.0001062884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001450485,0.000417887,0.004344892,0.0001157262,0.00002313919,0.0002034272,0.0001209886,0.000106468,0.9920985,0.00004121129,0.00006054878,0.001016788],"study_design_scores_gemma":[0.0002644835,0.05674538,0.2226062,0.0001559117,0.0002842187,0.002312408,0.002012508,0.004511017,0.7062812,0.0002750349,0.004457859,0.00009385122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981472,0.0004240319,0.0007188393,0.00006357668,0.00003923964,0.00006909942,0.0001407723,0.00002131889,0.0003759071],"genre_scores_gemma":[0.9968672,0.0003906687,0.001084327,0.00009805607,0.00001379568,0.0001363338,0.0002216752,0.000006009453,0.001181994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001648035,"threshold_uncertainty_score":0.003276825,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200479267","doi":"10.1186/s13099-021-00466-w","title":"Gut microbiota imbalance in colorectal cancer patients, the risk factor of COVID-19 mortality","year":2021,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Fundamental Research Funds for the Central Universities; Chinese Society of Clinical Oncology; Central South University; Key Technology Research and Development Program of Shandong; National Natural Science Foundation of China","keywords":"Medical microbiology; Colorectal cancer; Coronavirus disease 2019 (COVID-19); Medicine; Parasitology; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Risk factor; Tropical medicine; Gut flora; Internal medicine; Cancer; Immunology; Virology; Pathology; Disease; Infectious disease (medical specialty); Outbreak","authors":[{"name":"Changjing Cai","is_ca":false},{"name":"Xiangyang Zhang","is_ca":false},{"name":"Yihan Liu","is_ca":false},{"name":"Edward Shen","is_ca":true},{"name":"Ziyang Feng","is_ca":false},{"name":"Cao Guo","is_ca":false},{"name":"Ying Han","is_ca":false},{"name":"Yanhong Ouyang","is_ca":false},{"name":"Hong Shen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0148947474309378,"gpt":0.2939998420194124,"spread":0.2791050945884745,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002319554,0.0002150232,0.0002415787,0.0004920916,0.0004566797,0.0004751341,0.0001173398,0.0002926621,0.001486475],"category_scores_gemma":[0.0008304486,0.0001096187,0.0002186726,0.0006766311,0.00017005,0.000255852,0.0003776604,0.0004250538,0.0001086643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002821285,"about_ca_system_score_gemma":0.0003298796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002409272,"about_ca_topic_score_gemma":0.003943739,"domain_scores_codex":[0.9998046,0.00004016285,0.00002404249,0.00004813822,0.0000322358,0.00005095065],"domain_scores_gemma":[0.9995934,0.00003379554,0.0002133456,0.00001606735,0.00003842817,0.0001050893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002265343,0.00002595487,0.996017,0.00003619678,0.00002841239,0.0001789358,0.00005648696,0.00002756317,0.0009757099,0.00001790477,0.0001172221,0.002292021],"study_design_scores_gemma":[0.000004854893,0.0000798681,0.9986324,0.00001484082,0.00003613403,0.0003512712,0.0002046199,0.0001409384,0.0001650579,0.0000389565,0.0003273596,0.000003621557],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976304,0.001325983,0.000107872,0.0001611322,0.00001763328,0.00001009982,0.0002657993,0.000004551975,0.0004764995],"genre_scores_gemma":[0.9991192,0.0002817066,0.000166007,0.00004951014,0.00001582171,0.000005878412,0.0002339534,0.000001100532,0.0001268771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002409272,"threshold_uncertainty_score":0.004972756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2221330547","doi":"10.1186/s13099-015-0082-0","title":"Lactobacilli with probiotic potential in the prairie vole (Microtus ochrogaster)","year":2015,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Lawson Health Research Institute; Oklahoma Center for the Advancement of Science and Technology; Center for Health Sciences, Oklahoma State University; Oklahoma State University","keywords":"Microtus; Prairie vole; Probiotic; Parasitology; Biology; Medicine; Zoology","authors":[{"name":"Senait Assefa","is_ca":false},{"name":"Kathleen Ahles","is_ca":false},{"name":"Simone Bigelow","is_ca":false},{"name":"J. Thomas Curtis","is_ca":false},{"name":"Gerwald A. Köhler","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01600337505664957,"gpt":0.240493229155181,"spread":0.2244898540985314,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001087069,0.000288158,0.0002341184,0.0005864833,0.0003259037,0.0003644474,0.0001328927,0.0002827502,0.0004042602],"category_scores_gemma":[0.0002071095,0.0001254785,0.0001651561,0.0002573652,0.0002886761,0.000176076,0.0003299114,0.0003237753,0.00008326855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001605718,"about_ca_system_score_gemma":0.0001270446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002227701,"about_ca_topic_score_gemma":0.004367513,"domain_scores_codex":[0.9998937,0.00001435409,0.00000866027,0.00003735032,0.00001858727,0.00002732993],"domain_scores_gemma":[0.9998454,0.00001519388,0.00004992415,0.000008573421,0.00001585593,0.00006504764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000839022,0.0001927027,0.05326344,0.00006714829,0.00004471526,0.0005881016,0.0003262226,0.0001148365,0.941258,0.00005551568,0.00004687769,0.003203354],"study_design_scores_gemma":[0.00003127595,0.002348424,0.9390303,0.00002828596,0.0001209044,0.001682071,0.001662309,0.0006184313,0.05362557,0.0001226298,0.000712109,0.00001770703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995558,0.0002316173,0.00003432209,0.0000114913,0.000001629813,0.000003142133,0.00005088587,0.000002439153,0.0001086439],"genre_scores_gemma":[0.9991161,0.0001535942,0.00020907,0.00003150785,0.000002766865,0.000007480189,0.0001508857,0.000001898259,0.0003266762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002227701,"threshold_uncertainty_score":0.004429519,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409363860","doi":"10.1186/s13099-025-00694-4","title":"Coupling culturomics and metagenomics sequencing to characterize the gut microbiome of patients with cancer treated with immune checkpoint inhibitors","year":2025,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Centre de Recherche Industrielle du Québec; MAB-Mackay Rehabilitation Centre; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Metagenomics; Microbiome; Biology; Cancer; Human Microbiome Project; Biomarker; Shotgun sequencing; Computational biology; Human microbiome; Bioinformatics; DNA sequencing; Genetics; Gene","authors":[{"name":"Khoudia Diop","is_ca":true},{"name":"Babacar Mbaye","is_ca":true},{"name":"Somayeh Nili","is_ca":true},{"name":"Myriam Benlaïfaoui","is_ca":true},{"name":"Julie Malo","is_ca":true},{"name":"A. Renaud","is_ca":true},{"name":"Wiam Belkaïd","is_ca":true},{"name":"Sebastian Hunter","is_ca":true},{"name":"Meriem Messaoudene","is_ca":true},{"name":"Karla A. Lee","is_ca":false},{"name":"Arielle Elkrief","is_ca":true},{"name":"Bertrand Routy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00831984264885989,"gpt":0.2241891797362416,"spread":0.2158693370873817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005700426,0.0004096102,0.0004717768,0.001014372,0.0004205357,0.0007840859,0.0002920311,0.0003965457,0.0007010985],"category_scores_gemma":[0.001323317,0.000209971,0.0004348213,0.0009847727,0.000278993,0.0002156313,0.0007359799,0.0003599824,0.0002050888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004647404,"about_ca_system_score_gemma":0.0005749072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007735901,"about_ca_topic_score_gemma":0.01416091,"domain_scores_codex":[0.9994929,0.0001323995,0.00003188687,0.0001290639,0.000133643,0.00007999915],"domain_scores_gemma":[0.9994861,0.00009865592,0.0001277656,0.00005363205,0.0001503355,0.00008349265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001358621,0.0002848738,0.5548669,0.0003014348,0.0004626579,0.0003523275,0.001039375,0.001257377,0.4040025,0.0001097478,0.0006402064,0.03532394],"study_design_scores_gemma":[0.00003698686,0.0008863329,0.9340768,0.00007416816,0.0002835331,0.0007723474,0.001529307,0.005101988,0.0541929,0.0001669495,0.002850276,0.00002840878],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941146,0.0007838249,0.002592779,0.0001299624,0.00001576606,0.00009107702,0.00176268,0.00003224802,0.0004771078],"genre_scores_gemma":[0.9868118,0.0006301969,0.009207311,0.0002254136,0.00002209059,0.0001011872,0.002571641,0.00002224407,0.0004079902],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007735901,"threshold_uncertainty_score":0.01538175,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2798014911","doi":"10.1186/s13099-018-0236-y","title":"Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium","year":2018,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Crop Industry Development Fund; Agriculture and Agri-Food Canada","funders":"U.S. Department of Agriculture","keywords":"Florfenicol; Microbiology; Virulence; Salmonella enterica; Biology; Salmonella; Antibiotics; Chlortetracycline; Multiple drug resistance; Gene; Bacteria; Genetics","authors":[{"name":"Devin B. Holman","is_ca":true},{"name":"Shawn M. D. Bearson","is_ca":false},{"name":"Bradley L. Bearson","is_ca":false},{"name":"Brian W. Brunelle","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02174933494421725,"gpt":0.22817629344913,"spread":0.2064269585049128,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006411054,0.0003270142,0.0003171367,0.0001821513,0.0001202538,0.00026715,0.00009490973,0.0002498961,0.0009452061],"category_scores_gemma":[0.0001564365,0.0001682435,0.0003971658,0.0002146496,0.000176685,0.0001132685,0.0001879734,0.0004235103,0.0002529742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002032139,"about_ca_system_score_gemma":0.0001944145,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001911783,"about_ca_topic_score_gemma":0.002681798,"domain_scores_codex":[0.9998519,0.00001490917,0.000009206899,0.00004582442,0.00003467345,0.00004340874],"domain_scores_gemma":[0.9998819,0.00002245698,0.00003769405,0.000008225691,0.00002136508,0.00002840429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001276462,0.00001676215,0.0009018821,0.00006170518,0.000004222275,0.00004684256,0.00002615431,0.00005116476,0.9980614,0.00001015758,0.00007195521,0.0006201868],"study_design_scores_gemma":[0.00003293737,0.001013409,0.2338513,0.00006508818,0.00006597321,0.0004963815,0.0007279905,0.002259839,0.7553747,0.00008732283,0.005984692,0.00004030405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947705,0.001269332,0.0007827108,0.0001512648,0.00003681742,0.00001504852,0.001995541,0.00005822576,0.0009207135],"genre_scores_gemma":[0.9912118,0.0009440855,0.001751954,0.0003327971,0.00001321924,0.00005011172,0.002995977,0.00003295119,0.002667063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001911783,"threshold_uncertainty_score":0.003801286,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2551065658","doi":"10.1186/s13099-016-0134-0","title":"Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish","year":2016,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"Ministry of Food and Drug Safety","keywords":"Vibrio parahaemolyticus; Medical microbiology; Parasitology; Genome; Microbiology; Biology; Medicine; Genetics; Gene; Zoology; Bacteria","authors":[{"name":"Sojin Ahn","is_ca":false},{"name":"Han Young Chung","is_ca":false},{"name":"Sooyeon Lim","is_ca":false},{"name":"Kwondo Kim","is_ca":false},{"name":"Suyeon Kim","is_ca":false},{"name":"Eun Jung Na","is_ca":false},{"name":"Kelsey Caetano-Anollés","is_ca":true},{"name":"Ju-Hoon Lee","is_ca":false},{"name":"Sangryeol Ryu","is_ca":false},{"name":"Sang Ho Choi","is_ca":false},{"name":"Heebal Kim","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01931826658638934,"gpt":0.2459442131360288,"spread":0.2266259465496395,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003931297,0.001041699,0.001162066,0.001513214,0.0007511331,0.0006741449,0.0006018835,0.0007747942,0.001399725],"category_scores_gemma":[0.0006553527,0.0003953452,0.001197854,0.002502824,0.0002997849,0.0004330383,0.0006494772,0.0008912673,0.000973113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007344839,"about_ca_system_score_gemma":0.002378195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01230452,"about_ca_topic_score_gemma":0.007829015,"domain_scores_codex":[0.9995228,0.00002554322,0.00005197347,0.0001625015,0.0001501248,0.00008712738],"domain_scores_gemma":[0.9995922,0.00005560846,0.00009030924,0.00004782119,0.000151304,0.0000626913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008898035,0.0001228311,0.01344386,0.001376661,0.00008330472,0.0007631655,0.0007079567,0.0007720856,0.9561917,0.00021611,0.001451447,0.02398103],"study_design_scores_gemma":[0.0003728847,0.001944319,0.6474277,0.0006411419,0.001231113,0.004860627,0.002436918,0.004279573,0.2145638,0.0008304628,0.1210926,0.0003187525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8973773,0.004267318,0.008438339,0.0003795797,0.00016104,0.0003730029,0.0850886,0.0003316063,0.003583234],"genre_scores_gemma":[0.512874,0.003029126,0.03038312,0.0002874061,0.00007513916,0.000458654,0.4473601,0.0003498837,0.005182546],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01230452,"threshold_uncertainty_score":0.0244658,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105336219","doi":"10.1186/1757-4749-3-20","title":"The Broad Street pump revisited: dairy farms and an ongoing outbreak of inflammatory bowel disease in Forest, Virginia","year":2011,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"McGill University; Virginia Polytechnic Institute and State University","keywords":"Outbreak; Mycobacterium avium subspecies paratuberculosis; Medicine; Inflammatory bowel disease; Disease; Ulcerative colitis; Medical microbiology; Crohn's disease; Serology; Veterinary medicine; Paratuberculosis; Environmental health; Mycobacterium; Immunology; Virology; Internal medicine; Pathology; Tuberculosis","authors":[{"name":"Ellen S. Pierce","is_ca":false},{"name":"Stephen M. Borowitz","is_ca":false},{"name":"Saleh A. Naser","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02101318583666554,"gpt":0.2765345911475544,"spread":0.2555214053108888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003484697,0.0002261869,0.0001574696,0.00063768,0.00239318,0.001160657,0.0005202844,0.001377321,0.0007357716],"category_scores_gemma":[0.001083425,0.0002155129,0.00012597,0.0006003215,0.0007307495,0.000528138,0.0007142751,0.0008890197,0.0001176344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001413742,"about_ca_system_score_gemma":0.00151756,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.07499062,"about_ca_topic_score_gemma":0.1307784,"domain_scores_codex":[0.999564,0.0001028239,0.00002911333,0.00005514796,0.0000739122,0.0001750993],"domain_scores_gemma":[0.9994844,0.0001078513,0.0001511201,0.0000202296,0.00007916334,0.0001572283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001511836,0.0002331548,0.8785038,0.00004371029,0.00004582262,0.1011424,0.004059514,0.0002075373,0.002598636,0.0002914207,0.002345353,0.01037748],"study_design_scores_gemma":[0.00004038807,0.0005459106,0.813734,0.0001977229,0.00008032295,0.1282639,0.03968504,0.001204482,0.001299876,0.0003244544,0.0145784,0.0000454129],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972349,0.0002952498,0.00008845227,0.001151358,0.00002490649,0.00001255631,0.00002776832,0.000007023455,0.001157753],"genre_scores_gemma":[0.9988629,0.000334479,0.0001031646,0.0004485848,0.0000276521,0.000002085272,0.00002127679,0.000002260469,0.0001976604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07499062,"threshold_uncertainty_score":0.1491083,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4387303409","doi":"10.1186/s13099-023-00573-w","title":"Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment","year":2023,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Paratuberculosis; Streptomycin; Tuberculosis; Microbiology; Mycobacterium; Disease; Virulence; Mesenteric lymph nodes; Biology; Medicine; Mycobacterium bovis; Mycobacterium tuberculosis; Virology; Immunology; Spleen; Antibiotics; Pathology","authors":[{"name":"Shannon C. Duffy","is_ca":true},{"name":"Andréanne Lupien","is_ca":true},{"name":"Youssef Elhaji","is_ca":false},{"name":"Mina Farag","is_ca":true},{"name":"Victoria Marcus","is_ca":true},{"name":"Marcel A. Behr","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02720336104815813,"gpt":0.303591965121993,"spread":0.2763886040738349,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000186755,0.000301513,0.0004212959,0.0001980189,0.0001313128,0.0003560243,0.000254608,0.0004258006,0.001143869],"category_scores_gemma":[0.0002406305,0.0001293082,0.0002825637,0.0001144909,0.0002184392,0.0002126903,0.000260345,0.0009330942,0.00038424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001918415,"about_ca_system_score_gemma":0.0002110933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005132867,"about_ca_topic_score_gemma":0.001036061,"domain_scores_codex":[0.999675,0.00004855208,0.00002900515,0.00007181666,0.00008645757,0.0000892879],"domain_scores_gemma":[0.9997084,0.00005653282,0.00007277951,0.0000376778,0.0000463269,0.00007821665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003383367,0.0001841116,0.0004480678,0.00004723473,0.000004575134,0.00007740141,0.00004064087,0.00002836303,0.9975707,0.00002872302,0.00003967751,0.001192214],"study_design_scores_gemma":[0.00003996054,0.01140399,0.01239976,0.00002660385,0.00003034603,0.0003402183,0.0001191544,0.0006833007,0.9724319,0.00004009973,0.00247438,0.00001021335],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970859,0.0006461833,0.000966409,0.00006564277,0.00005713628,0.00006821305,0.0002619368,0.00004027856,0.0008084088],"genre_scores_gemma":[0.993629,0.0005118278,0.001758938,0.0000853459,0.00002084673,0.0001090269,0.0005665899,0.00001409421,0.003304233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001143869,"threshold_uncertainty_score":0.003826618,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3016448243","doi":"10.1186/s13099-020-00357-6","title":"Distribution of genes related to Type 6 secretion system and lipooligosaccharide that induced ganglioside mimicry among Campylobacter jejuni isolated from human diarrhea in Thailand","year":2020,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"U.S. Army Medical Research and Development Command; Public Health Agency; Public Health Agency of Canada","keywords":"Campylobacter jejuni; Microbiology; Virulence; Campylobacter; Biology; Diarrhea; Virology; Gene; Bacteria; Medicine; Genetics","authors":[{"name":"Oralak Serichantalergs","is_ca":false},{"name":"Patcharawalai Wassanarungroj","is_ca":false},{"name":"Nuanpan Khemnu","is_ca":false},{"name":"Frédéric Poly","is_ca":false},{"name":"Patricia Guerry","is_ca":false},{"name":"Ladaporn Bodhidatta","is_ca":false},{"name":"John M. Crawford","is_ca":false},{"name":"Brett Swierczewski","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02840338709685979,"gpt":0.2265867285390714,"spread":0.1981833414422116,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007957779,0.0003327267,0.000183577,0.000671014,0.0002393217,0.0003353602,0.0001116673,0.0002238014,0.001032546],"category_scores_gemma":[0.0003238966,0.0001698624,0.0002180035,0.0007818834,0.000228342,0.000130756,0.0002244435,0.0001745956,0.0001841134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000174823,"about_ca_system_score_gemma":0.0002062932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003629611,"about_ca_topic_score_gemma":0.002140776,"domain_scores_codex":[0.9998347,0.00002075962,0.00002428518,0.00004988003,0.00002666941,0.00004361094],"domain_scores_gemma":[0.9996062,0.00006673948,0.0001178208,0.00001607675,0.00006840008,0.0001247621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00126256,0.0000983823,0.7182978,0.0002869248,0.00007582454,0.003592989,0.001344915,0.0002141504,0.2681284,0.00003194761,0.0001865178,0.006479629],"study_design_scores_gemma":[0.00002112184,0.0004755068,0.9800136,0.00002748231,0.00005254816,0.004089828,0.001610514,0.000272481,0.01286036,0.00002170471,0.0005438253,0.00001112989],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993351,0.000110487,0.00004781851,0.000007215323,0.000001405982,0.000006696646,0.0003222255,0.000002139254,0.0001668941],"genre_scores_gemma":[0.9987229,0.0001439297,0.0001462047,0.00001662637,0.000004153308,0.00001016094,0.0007200839,0.000001879455,0.0002340604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003629611,"threshold_uncertainty_score":0.00721699,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2767279591","doi":"10.1186/s13099-017-0212-y","title":"Community-acquired infection with hypervirulent Clostridium difficile isolates that carry different toxin and antibiotic resistance loci: a case report","year":2017,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Universidad del Rosario; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS); Craft Ontario","keywords":"Clostridium difficile; Ampicillin; Microbiology; Biology; Multilocus sequence typing; Medical microbiology; Antibiotic resistance; Antibiotics; Metronidazole; Population; Drug resistance; Diarrhea; Amp resistance; Clostridium difficile toxin A; Virology; Genotype; Medicine; Gene; Genetics; Internal medicine","authors":[{"name":"Marina Muñoz","is_ca":false},{"name":"Milena Camargo","is_ca":false},{"name":"Dora Ríos-Chaparro","is_ca":false},{"name":"Paula Gómez","is_ca":false},{"name":"Manuel A. Patarroyo","is_ca":false},{"name":"Juan David Ramírez","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04772905491879854,"gpt":0.3008934564101871,"spread":0.2531644014913885,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005355117,0.00311899,0.001447334,0.003302306,0.003792547,0.002353021,0.001491699,0.005240149,0.002808825],"category_scores_gemma":[0.003720927,0.002127308,0.001360681,0.001824559,0.0021903,0.00210166,0.002637392,0.00314146,0.00121303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001199693,"about_ca_system_score_gemma":0.0009246098,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00391269,"about_ca_topic_score_gemma":0.003779074,"domain_scores_codex":[0.9983627,0.0001774503,0.0001662679,0.0004251899,0.0003037335,0.0005646047],"domain_scores_gemma":[0.9975447,0.0004706388,0.0004664964,0.0002592354,0.000215973,0.001042943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.00008013499,0.0001797745,0.02849993,0.00005011784,0.0000280858,0.9676623,0.0006628069,0.00004046264,0.001187781,0.00007729766,0.0002739016,0.001257464],"study_design_scores_gemma":[0.00001645568,0.000126358,0.01131139,0.00001772096,0.00001932667,0.9873515,0.0003255164,0.0001378124,0.0002859572,0.00004558103,0.0003438177,0.00001849126],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933746,0.001741726,0.001171148,0.0005929549,0.0001301633,0.0001180292,0.0001194638,0.00004959807,0.002702222],"genre_scores_gemma":[0.9975401,0.0006236325,0.0006409246,0.000332929,0.0003340978,0.00002051801,0.0001074938,0.00001578389,0.0003844691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005240149,"threshold_uncertainty_score":0.009396493,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3104115381","doi":"10.1186/s13099-020-00386-1","title":"The absence of murine cathelicidin-related antimicrobial peptide impacts host responses enhancing Salmonella enterica serovar Typhimurium infection","year":2020,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Chinook Regional Hospital; University of Lethbridge; University of Alberta; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Alberta Innovates; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Canadian Glycomics Network; Public Health Agency; Public Health Agency of Canada","keywords":"Cathelicidin; Salmonella enterica; Microbiology; Medical microbiology; Salmonella; Parasitology; Serotype; Antimicrobial; Antimicrobial peptides; Host (biology); Biology; Medicine; Virology; Bacteria","authors":[{"name":"Danisa M. Bescucci","is_ca":true},{"name":"Sandra T. Clarke","is_ca":true},{"name":"Catherine L. J. Brown","is_ca":true},{"name":"Valerie F. Boras","is_ca":true},{"name":"Tony Montina","is_ca":true},{"name":"Richard R. E. Uwiera","is_ca":true},{"name":"G. Douglas Inglis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01334726867190691,"gpt":0.230188944662003,"spread":0.2168416759900961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001315332,0.0003976359,0.0003068934,0.000221497,0.00008978425,0.0003253927,0.0001498003,0.0003608739,0.001093902],"category_scores_gemma":[0.0001112567,0.0001656409,0.0002489274,0.0001026172,0.0002739076,0.0001932086,0.000173128,0.0007854698,0.0002371708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002030371,"about_ca_system_score_gemma":0.0001672046,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000418986,"about_ca_topic_score_gemma":0.0005338582,"domain_scores_codex":[0.9997863,0.00003659848,0.0000266366,0.00004774539,0.00004170018,0.00006111297],"domain_scores_gemma":[0.999765,0.00001914387,0.00008169824,0.00002149657,0.00002184138,0.0000909477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003020125,0.00004139131,0.0001926681,0.00002187237,0.000002671905,0.00001680916,0.000004881879,0.00001569287,0.999168,0.00001134912,0.00001007111,0.0002125874],"study_design_scores_gemma":[0.00003138795,0.003424922,0.01429521,0.00001550753,0.00003211024,0.0002330666,0.00007335723,0.0004377865,0.9806216,0.0000297997,0.0007973107,0.000007825726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983973,0.0003926884,0.0004098283,0.00004417724,0.00001808808,0.00001231346,0.0003581966,0.00002602131,0.0003413077],"genre_scores_gemma":[0.9967543,0.0003397627,0.0008072742,0.00006049011,0.0000105544,0.00003376647,0.0004554844,0.00001230106,0.001526051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001093902,"threshold_uncertainty_score":0.003659427,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3138817227","doi":"10.1186/s13099-021-00416-6","title":"Phylogenetic analysis of HIV-1 archived DNA in blood and gut-associated lymphoid tissue in two patients under antiretroviral therapy","year":2021,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"MSD Life Science Foundation, Public Interest Incorporated Foundation; Université de Bordeaux; Agence Nationale de la Recherche","keywords":"Virology; Provirus; Biology; Epitope; Genome; DNA sequencing; Phylogenetic tree; Medical microbiology; Immunology; DNA; Genetics; Antigen; Gene","authors":[{"name":"Patrícia Recordon-Pinson","is_ca":false},{"name":"Annie Gosselin","is_ca":true},{"name":"Petronela Ancuța","is_ca":true},{"name":"Jean‐Pierre Routy","is_ca":true},{"name":"Hervé Fleury","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0122893174517189,"gpt":0.2661357950889436,"spread":0.2538464776372247,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001521847,0.0002005399,0.0002816761,0.0008306152,0.0007149905,0.0006030819,0.0001685616,0.0006427651,0.0008904405],"category_scores_gemma":[0.001219507,0.0001693095,0.0001932673,0.0004886672,0.0003041171,0.0001740303,0.0003050594,0.0004704567,0.0001710252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002220362,"about_ca_system_score_gemma":0.0001195616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001206179,"about_ca_topic_score_gemma":0.000872619,"domain_scores_codex":[0.9997308,0.00006421933,0.00002768057,0.00007924798,0.00003806495,0.00006014442],"domain_scores_gemma":[0.999674,0.00009366719,0.00006034036,0.00002524049,0.00004896316,0.00009786251],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001953833,0.0002822709,0.853921,0.00009890618,0.00007991026,0.01492953,0.005162717,0.0004067925,0.1013027,0.0002657163,0.0003142338,0.02128245],"study_design_scores_gemma":[0.00006867514,0.001618995,0.9466613,0.00005685736,0.000111343,0.03037849,0.003680218,0.001765175,0.01195815,0.0002225037,0.00344476,0.00003367193],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994524,0.00009814474,0.0001258558,0.000030903,0.000004152221,0.000008367902,0.00008729308,0.000001910509,0.0001909881],"genre_scores_gemma":[0.9989817,0.000107647,0.0004157648,0.000066876,0.000008756267,0.000009251416,0.0002475206,0.000003402134,0.0001589235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001206179,"threshold_uncertainty_score":0.002978802,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4309433298","doi":"10.1186/s13099-022-00516-x","title":"Genomes of Vibrio metoecus co-isolated with Vibrio cholerae extend our understanding of differences between these closely related species","year":2022,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research; Directorate for Biological Sciences; University of Alberta; Alberta Innovates; Alberta Innovates - Technology Futures","keywords":"Vibrio cholerae; Medical microbiology; Microbiology; Parasitology; Genome; Biology; Vibrio; Zoology; Genetics; Gene; Bacteria","authors":[{"name":"Fabini D. Orata","is_ca":true},{"name":"Nora A.S. Hussain","is_ca":true},{"name":"Kevin Y. H. Liang","is_ca":true},{"name":"Dalong Hu","is_ca":false},{"name":"Yan Boucher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05003604741722241,"gpt":0.2785010624614022,"spread":0.2284650150441798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001894679,0.0003890013,0.000306444,0.0007221042,0.0003394582,0.0004002921,0.0002332988,0.0004206197,0.00128961],"category_scores_gemma":[0.0007683504,0.0001339276,0.0003084495,0.0008387447,0.0002125099,0.0002856911,0.0005291752,0.0003134251,0.0002536913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003059081,"about_ca_system_score_gemma":0.0003559325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002326215,"about_ca_topic_score_gemma":0.003399477,"domain_scores_codex":[0.9997665,0.00002299285,0.00001974958,0.00008267513,0.00006137709,0.00004668432],"domain_scores_gemma":[0.9994301,0.0001380186,0.0001809661,0.00005508601,0.0001332168,0.00006259714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006865756,0.0001620188,0.2185976,0.001142306,0.0002333787,0.0007786253,0.001224153,0.0005879037,0.7494172,0.0003548634,0.0005080822,0.02630744],"study_design_scores_gemma":[0.00002594444,0.0005082382,0.939664,0.0001559747,0.0002813119,0.004275609,0.001783292,0.001332792,0.03769824,0.0006383093,0.01360495,0.00003133538],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950978,0.001150844,0.001054366,0.00008663732,0.0000198959,0.00001929491,0.001671258,0.00003588999,0.0008639829],"genre_scores_gemma":[0.9891703,0.0005471744,0.003508153,0.00008687107,0.00001613347,0.00002327496,0.006252206,0.00002478788,0.0003711079],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002326215,"threshold_uncertainty_score":0.00462532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4414554881","doi":"10.1186/s13099-025-00749-6","title":"Global research landscape and advancements on the links between the gut microbiome and insulin resistance: hot issues, trends, future directions, and bibliometric analysis","year":2025,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Gut microbiome; Gut flora; Microbiome; Bibliometrics; Web of science; Medical microbiology; Parasitology","authors":[{"name":"Sa’ed H. Zyoud","is_ca":false},{"name":"Muna Shakhshir","is_ca":false},{"name":"Amani S. Abushanab","is_ca":false},{"name":"Amer Koni","is_ca":false},{"name":"Moyad Shahwan","is_ca":false},{"name":"Ammar Abdulrahman Jairoun","is_ca":false},{"name":"Banan M. Aiesh","is_ca":false},{"name":"Samah W. Al‐Jabi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02055097977641087,"gpt":0.3462669046535073,"spread":0.3257159248770965,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["bibliometrics"],"consensus_categories":[],"category_scores_codex":[0.01977747,0.000860735,0.002487612,0.1272963,0.001119409,0.009147545,0.001013572,0.0009729786,0.005737016],"category_scores_gemma":[0.06028778,0.0003645955,0.002267987,0.2496885,0.00190387,0.007777673,0.002990971,0.0009175194,0.0008837597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003046993,"about_ca_system_score_gemma":0.006336886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004949838,"about_ca_topic_score_gemma":0.006142172,"domain_scores_codex":[0.9855556,0.003275097,0.003662036,0.002139082,0.004626813,0.0007413615],"domain_scores_gemma":[0.8865589,0.0726492,0.02157316,0.003471327,0.01374597,0.002001395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003052407,0.00006932091,0.2284971,0.08355272,0.003268736,0.0005809236,0.006286768,0.001696515,0.001416379,0.02151293,0.04124444,0.6115689],"study_design_scores_gemma":[0.00006871104,0.0001608276,0.6374278,0.04923685,0.004672964,0.001939491,0.0159021,0.003098893,0.001198301,0.02562119,0.2603975,0.0002754219],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1332346,0.7682532,0.004546731,0.03391533,0.001079374,0.0002372541,0.03447076,0.0004449096,0.02381779],"genre_scores_gemma":[0.4179098,0.548157,0.008052645,0.0020615,0.002700363,0.0003302327,0.01918097,0.0001490707,0.001458381],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8727037,"threshold_uncertainty_score":0.1045945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4417148474","doi":"10.1186/s13099-025-00784-3","title":"Gut microbiota and intestinal polyps: a systematic review and meta-analysis based on 16S rRNA gene sequencing","year":2025,"lang":"en","type":"review","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Gut flora; Parasitology; 16S ribosomal RNA; Medical microbiology; Ribosomal RNA; DNA sequencing; Personalized medicine","authors":[{"name":"Qian Wu","is_ca":false},{"name":"Siyu Lu","is_ca":false},{"name":"Lizhong Wang","is_ca":false},{"name":"Xiaoli Liao","is_ca":false},{"name":"Dangheng Wei","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05257059514449455,"gpt":0.3310407802592108,"spread":0.2784701851147162,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009715378,0.002854683,0.01749867,0.01139918,0.0006978738,0.003072171,0.001713237,0.001880591,0.002550921],"category_scores_gemma":[0.0202296,0.001306776,0.03322208,0.012138,0.0006602863,0.001902448,0.001714398,0.001535372,0.0002751138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002299338,"about_ca_system_score_gemma":0.004611925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007175883,"about_ca_topic_score_gemma":0.01688088,"domain_scores_codex":[0.9922464,0.002898427,0.00247346,0.0009510496,0.001108455,0.0003222293],"domain_scores_gemma":[0.9893065,0.007100031,0.001974041,0.0003611898,0.001079522,0.0001787192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001130788,0.00002548443,0.007910296,0.5955855,0.3762617,0.0002886113,0.0001106754,0.0007076355,0.0004817819,0.0001844387,0.0008400282,0.01647295],"study_design_scores_gemma":[0.0002947656,0.0002174751,0.007871134,0.05537601,0.9327355,0.0002523636,0.00007458418,0.0002861807,0.0001695974,0.0002115925,0.002475912,0.00003484098],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003780571,0.9947413,0.0003760433,0.000154583,0.00009182916,0.0001843078,0.000518359,0.00001482083,0.0001381498],"genre_scores_gemma":[0.1015004,0.8935061,0.002243136,0.0006053495,0.0001928685,0.0008193221,0.0008913765,0.00002060474,0.0002208454],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01749867,"threshold_uncertainty_score":0.05138046,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4415658734","doi":"10.1186/s13099-025-00760-x","title":"Effects of exogenous protease supplementation of diets containing animal proteins or not on Campylobacter jejuni colonization and on the intestinal microbiota of broiler chickens","year":2025,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal","keywords":"Campylobacter jejuni; Broiler; Colonization; Protease; Medical microbiology; Parasitology; Microbiome","authors":[{"name":"Sophie Chagneau","is_ca":true},{"name":"Marie‐Lou Gaucher","is_ca":true},{"name":"Philippe Fravalo","is_ca":false},{"name":"Emma Nouhaud","is_ca":true},{"name":"Elizabeth Santín","is_ca":true},{"name":"Ludovic Lahaye","is_ca":true},{"name":"Alexandre Thibodeau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02129981139592751,"gpt":0.2459086692292053,"spread":0.2246088578332778,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002167638,0.0006292375,0.0005671657,0.0003268842,0.0002271813,0.0005820462,0.0003043668,0.0005926706,0.0008275289],"category_scores_gemma":[0.0003201133,0.0002515794,0.0002706172,0.0001594433,0.0004700295,0.0003121393,0.0002723163,0.0007668644,0.0001783451],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004542531,"about_ca_system_score_gemma":0.0003190642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001746042,"about_ca_topic_score_gemma":0.003412399,"domain_scores_codex":[0.9996469,0.00006798819,0.00003486095,0.0001093223,0.00006000635,0.00008085425],"domain_scores_gemma":[0.9994943,0.00009685452,0.0001192311,0.00002813634,0.00006944971,0.0001919549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00423453,0.0004697169,0.0008710241,0.0001658825,0.00002835675,0.00008108588,0.0000545303,0.00007117248,0.9925193,0.00001963227,0.00004604088,0.001438641],"study_design_scores_gemma":[0.0002368379,0.01461928,0.04243771,0.00007687006,0.0002369334,0.000263323,0.000363928,0.00124625,0.9378495,0.00006025428,0.002557584,0.00005162588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978793,0.001117064,0.0002290199,0.00007825647,0.00004775445,0.00002588075,0.0002275897,0.00001573266,0.0003795699],"genre_scores_gemma":[0.9954762,0.0006496434,0.001407793,0.0001473681,0.00001854844,0.00005018195,0.0003608726,0.00001588222,0.001873608],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001746042,"threshold_uncertainty_score":0.003471792,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402960207","doi":"10.1186/s13099-024-00649-1","title":"Correction: Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment","year":2024,"lang":"en","type":"erratum","venue":"Gut Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University; McGill University Health Centre","funders":"","keywords":"Streptomycin; Parasitology; Medical microbiology; Medicine; Enteric fever; Microbiology; Virology; Antibiotics; Biology; Pathology; Typhoid fever","authors":[{"name":"Shannon C. Duffy","is_ca":true},{"name":"Andréanne Lupien","is_ca":true},{"name":"Youssef Elhaji","is_ca":false},{"name":"Mina Farag","is_ca":true},{"name":"Victoria Marcus","is_ca":true},{"name":"Marcel A. Behr","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01840060099809353,"gpt":0.2911550047972493,"spread":0.2727544037991557,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002782998,0.002450293,0.001699448,0.002423969,0.00218458,0.003164305,0.003430972,0.01082525,0.0261456],"category_scores_gemma":[0.0394893,0.001164139,0.00145044,0.001239156,0.00238806,0.001785411,0.001796591,0.01298693,0.01829096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002953679,"about_ca_system_score_gemma":0.003668193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008378163,"about_ca_topic_score_gemma":0.009090834,"domain_scores_codex":[0.9972903,0.0004474254,0.000501488,0.0003887416,0.00100338,0.0003687822],"domain_scores_gemma":[0.9846027,0.005364936,0.001140223,0.0010664,0.006388097,0.001437811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007280902,0.00001066783,0.00009162421,0.0002158295,0.00001976932,0.001882256,0.0000282282,0.00005077104,0.00009849491,0.0005438444,0.9918389,0.005146823],"study_design_scores_gemma":[0.00007510978,0.0000425684,0.0007876203,0.0003496454,0.00006448333,0.003229982,0.00008910734,0.0002473054,0.0006110935,0.0009462063,0.9935147,0.00004226674],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"other","genre_scores_codex":[0.0001332208,0.0007125328,0.0002670653,0.0299113,0.9675308,0.00001021623,0.0002576386,0.0001108314,0.001066369],"genre_scores_gemma":[0.02261491,0.01306507,0.004543495,0.09888061,0.6992997,0.0001632211,0.001212709,0.0009923144,0.159228],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.0261456,"threshold_uncertainty_score":0.08746576,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}