{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":316,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":316,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"a7af0be6b114","filters":{"venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY"}},"results":[{"id":"W3016016792","doi":"10.1099/ijsem.0.004107","title":"A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":3176,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Agentschap voor Innovatie door Wetenschap en Technologie; Fonds Wetenschappelijk Onderzoek; National Natural Science Foundation of China; Canada Research Chairs","keywords":"Biology; Lactobacillus; Lactobacillus crispatus; Lactobacillaceae; Taxonomy (biology); Zoology; Lactobacillus acidophilus; Phylogenetics; Bacteria; Genetics; Gene; Probiotic","retraction":null,"screen_n_in":null,"score":{"opus":0.04367375014388686,"gpt":0.2152905686020903,"spread":0.1716168184582034,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005040164,0.000154743,0.0004156861,0.00004232357,0.0000815463,0.00002042627,0.0002960847,0.0001228631,0.00001848195],"category_scores_gemma":[0.0001659606,0.00006093414,0.0001205633,0.0001019413,0.0002770031,0.0001096231,0.0001503308,0.0001504497,0.000001088547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006928818,"about_ca_system_score_gemma":0.00003266403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006560026,"about_ca_topic_score_gemma":0.00004868969,"domain_scores_codex":[0.9985186,0.0002306962,0.0008076309,0.0001658176,0.0001521888,0.0001250401],"domain_scores_gemma":[0.9982885,0.0002415561,0.001029997,0.00006300195,0.0003193759,0.00005759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002912521,0.0001031915,0.007136992,0.000458478,0.0002613136,0.00000128785,0.000392112,0.0000856292,0.9891845,0.001242881,0.0001968407,0.0006455047],"study_design_scores_gemma":[0.009958036,0.0112276,0.8629099,0.01500559,0.001395493,0.006072837,0.01334398,0.009958108,0.05516706,0.002686051,0.01048531,0.001790054],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949031,0.001362983,0.0002856288,0.002442173,0.0002998311,0.0003627688,0.0002808329,0.000003431708,0.00005926679],"genre_scores_gemma":[0.9991035,0.000388315,0.0001896014,0.0001739542,0.00009537996,0.000003498987,0.00001859454,0.00000188773,0.00002528355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9340175,"threshold_uncertainty_score":0.2484822,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2519525355","doi":"10.1099/ijsem.0.001485","title":"Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.","year":2016,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":994,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Monophyly; Phylogenetic tree; Clade; Phylogenetics; Genome; Taxonomy (biology); Evolutionary biology; Genetics; Ribosomal RNA; Phylogenomics; Zoology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01106108804336077,"gpt":0.2139448193074079,"spread":0.2028837312640472,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.001487412,0.001336483,0.002085879,0.0005263583,0.0006739651,0.0002779832,0.001817481,0.0007004825,0.0000617449],"category_scores_gemma":[0.0004851866,0.0008552029,0.0008080087,0.0002671865,0.001910874,0.00009523668,0.001366899,0.0004609464,0.00001786402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003691515,"about_ca_system_score_gemma":0.0006748324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001326239,"about_ca_topic_score_gemma":0.0004148969,"domain_scores_codex":[0.9930587,0.0008964883,0.003027046,0.001390461,0.0005283863,0.001098876],"domain_scores_gemma":[0.9933473,0.000674755,0.002873505,0.00107036,0.001688041,0.0003460398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001849545,0.0004358821,0.05778091,0.001737136,0.002418261,0.00001424362,0.001052346,0.00004679395,0.9331074,0.000195498,0.001124468,0.0002374641],"study_design_scores_gemma":[0.03820927,0.008971199,0.70487,0.01539668,0.004053629,0.009042593,0.009509214,0.0003266659,0.09484665,0.001810682,0.1064761,0.00648729],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780884,0.006472744,0.002793746,0.004323103,0.003413416,0.002859157,0.001963764,0.00002492697,0.00006068565],"genre_scores_gemma":[0.9907957,0.002950722,0.003190467,0.0006550491,0.001210758,0.0002428497,0.0002907367,0.000139766,0.0005239019],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8382608,"threshold_uncertainty_score":0.9999386,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2291091413","doi":"10.1099/ijsem.0.000778","title":"International Code of Nomenclature of Prokaryotes","year":2015,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":726,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Canadian Patient Safety Institute; Iowa State University","keywords":"Nomenclature; Biology; Commission; Library science; Code (set theory); Law; Classics; History; Genealogy; Zoology; Taxonomy (biology); Computer science; Political science; Programming language","retraction":null,"screen_n_in":null,"score":{"opus":0.01734985965966483,"gpt":0.2519822864383625,"spread":0.2346324267786977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003378692,0.00008912719,0.0002916614,0.0001065402,0.00001189567,0.000004230801,0.0003105531,0.00008691702,0.000006483541],"category_scores_gemma":[0.0001956348,0.00006915435,0.00009187972,0.00002823058,0.0001433978,0.000003136458,0.0001303205,0.00005155131,8.443212e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000218195,"about_ca_system_score_gemma":0.00009988974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005145283,"about_ca_topic_score_gemma":0.000001926957,"domain_scores_codex":[0.99902,0.00006555203,0.0006286965,0.00009841892,0.0001147094,0.00007256508],"domain_scores_gemma":[0.9981844,0.00003454601,0.0006518998,0.00008756884,0.00100117,0.00004040366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000366866,0.0001424382,0.02187738,0.0006638591,0.001270647,0.000006297784,0.0004698402,0.00021522,0.9705039,0.001030574,0.003379842,0.00007311604],"study_design_scores_gemma":[0.03555609,0.01743109,0.140839,0.0220206,0.002007833,0.04877703,0.02165132,0.001250875,0.5200517,0.03753112,0.149399,0.003484232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875351,0.008988804,0.0009583601,0.0004184689,0.001259609,0.0001382517,0.0001464647,7.517627e-7,0.0005541801],"genre_scores_gemma":[0.9961901,0.0004862397,0.002916657,0.00003783665,0.0002219913,0.000002744946,0.00002424029,0.000005460167,0.0001147554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4504522,"threshold_uncertainty_score":0.2820032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156705208","doi":"10.1099/ijs.0.034926-0","title":"Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":556,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Strategic Environmental Research and Development Program; National Science Foundation","keywords":"Biology; Dehalococcoides; Electron acceptor; Reductive dechlorination; Bioremediation; 16S ribosomal RNA; Microbiology; Bacteria; Nuclear chemistry; Biochemistry; Biodegradation; Chemistry; Organic chemistry; Ecology; Vinyl chloride","retraction":null,"screen_n_in":null,"score":{"opus":0.01772105797457793,"gpt":0.2405026147323105,"spread":0.2227815567577326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002338556,0.000722265,0.00110347,0.0005409484,0.0004946811,0.0002663833,0.0009191081,0.0004221763,0.0002568693],"category_scores_gemma":[0.0009443935,0.0005304309,0.0001791406,0.00064936,0.0006592929,0.00088603,0.000844146,0.000502263,0.000236288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005247232,"about_ca_system_score_gemma":0.0002068655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003396279,"about_ca_topic_score_gemma":0.0005569301,"domain_scores_codex":[0.9949563,0.0004122558,0.002395176,0.0007685411,0.0005969125,0.0008708108],"domain_scores_gemma":[0.9963306,0.0005360579,0.001488356,0.000416437,0.0005596899,0.0006688104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003357464,0.00019858,0.06199475,0.000283605,0.000314168,0.00001888443,0.001961407,0.0001316728,0.9327685,0.0001151119,0.001641851,0.0002356853],"study_design_scores_gemma":[0.008671255,0.001267313,0.8685587,0.005734586,0.0009954137,0.01051817,0.006415599,0.0007446958,0.08088093,0.0002561474,0.01264594,0.003311244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896402,0.001467135,0.001497209,0.002981093,0.002512396,0.001487722,0.0003216318,0.00004414838,0.00004844313],"genre_scores_gemma":[0.9869428,0.000335001,0.0100307,0.001566907,0.0008377745,0.00005137773,0.00009110917,0.00006679834,0.0000775318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8518876,"threshold_uncertainty_score":0.9997147,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3095475495","doi":"10.1099/ijsem.0.004475","title":"Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":515,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clade; Phylogenomics; Phylogenetic tree; Monophyly; Phylogenetics; Bacillus (shape); Evolutionary biology; Zoology; Botany; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.08682491615456048,"gpt":0.2746243076221522,"spread":0.1877993914675917,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003436241,0.0001729958,0.0005324045,0.00007124976,0.00008772901,0.00001580172,0.0002397916,0.00008820358,0.000004124126],"category_scores_gemma":[0.0001635536,0.0001141461,0.00009960814,0.00006254814,0.000478117,0.000009721639,0.0001851143,0.00006352762,5.599735e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003574068,"about_ca_system_score_gemma":0.00014331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005491695,"about_ca_topic_score_gemma":0.0001465439,"domain_scores_codex":[0.9985269,0.0001470068,0.0008710238,0.0002218255,0.000114811,0.0001184103],"domain_scores_gemma":[0.9980003,0.0001137098,0.0010183,0.0001218319,0.0006898576,0.00005595781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000403444,0.00005835517,0.007750128,0.0007914621,0.0007481067,2.383286e-7,0.001745025,0.001240692,0.9866349,0.000216595,0.0003804944,0.00003052225],"study_design_scores_gemma":[0.01014348,0.01025657,0.3053116,0.003218338,0.002884887,0.003489352,0.06297997,0.01161015,0.5841057,0.0007100469,0.003786745,0.001503173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907085,0.005322993,0.001853192,0.0006785468,0.0001090683,0.0005922302,0.0006956977,6.513719e-7,0.00003907295],"genre_scores_gemma":[0.9950531,0.0004895389,0.004197,0.00005804898,0.00008799779,0.000005717406,0.0000546225,0.000008047081,0.00004593664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4025293,"threshold_uncertainty_score":0.4654744,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164922079","doi":"10.1099/ijs.0.65269-0","title":"Brucella ceti sp. nov. and Brucella pinnipedialis sp. nov. for Brucella strains with cetaceans and seals as their preferred hosts","year":2007,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":480,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Patient Safety Institute; Center for Evolutionary and Theoretical Immunology","keywords":"Biology; Brucella; Microbiology; Brucellosis; Bacteria; Arabinose; Xylose; Virology; Fermentation; Genetics; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.05338612162159308,"gpt":0.3248345287287689,"spread":0.2714484071071758,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002072145,0.0005244504,0.001271122,0.0004371785,0.0001998713,0.00007119328,0.0004218898,0.0004012846,0.00007329491],"category_scores_gemma":[0.0003639485,0.0003796074,0.0002094421,0.0001016063,0.0005583546,0.0001988854,0.0001788647,0.0003253588,0.00001805855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000297426,"about_ca_system_score_gemma":0.0001726246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001163454,"about_ca_topic_score_gemma":0.0001091955,"domain_scores_codex":[0.9964015,0.0004503948,0.001764069,0.0005807976,0.0002317704,0.000571444],"domain_scores_gemma":[0.9951857,0.00214228,0.001366602,0.000272512,0.0007415866,0.0002913598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","study_design_scores_codex":[0.02135906,0.00405605,0.3465041,0.02604097,0.02095233,0.00450279,0.01450198,0.0003686722,0.4878015,0.014894,0.05615862,0.002859906],"study_design_scores_gemma":[0.0428433,0.0223371,0.3861654,0.03100945,0.003239516,0.4402017,0.01852652,0.001266335,0.009602561,0.01228985,0.02756719,0.004951145],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795178,0.01320302,0.001815169,0.002145768,0.001052304,0.001320069,0.0004451406,0.00003209228,0.0004686479],"genre_scores_gemma":[0.9926519,0.001786218,0.003929545,0.0005488828,0.0006054067,0.0000403604,0.00009950907,0.00005243047,0.0002857362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4781989,"threshold_uncertainty_score":0.9998656,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125775747","doi":"10.1099/ijs.0.63149-0","title":"Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":364,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Nova Scotia Department of Agriculture; University of Waterloo","funders":"Vlaamse regering","keywords":"Biology; 16S ribosomal RNA; Rhizosphere; Burkholderia; Homoserine; Microbiology; Botany; Strain (injury); Bacteria; Quorum sensing; Biofilm; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01369770054815036,"gpt":0.2039966581704538,"spread":0.1902989576223035,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002303959,0.0001785278,0.0003535952,0.00009883539,0.00007167942,0.00003953586,0.0002125833,0.0001631796,0.00001696704],"category_scores_gemma":[0.00005694218,0.000124136,0.00008683336,0.00003400434,0.0001131818,0.00002370835,0.00007149071,0.0001057252,0.000005651372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005571525,"about_ca_system_score_gemma":0.000107804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001535086,"about_ca_topic_score_gemma":0.00004822457,"domain_scores_codex":[0.998851,0.00007346315,0.0005904394,0.000179085,0.0001109652,0.0001950286],"domain_scores_gemma":[0.9989486,0.00002055497,0.0005175472,0.00009666681,0.0003572661,0.00005938738],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005532065,0.0001254617,0.0006034464,0.0002409362,0.000446777,0.00001289481,0.0001060128,0.00006107367,0.9968798,0.00005320551,0.0008952913,0.00002191861],"study_design_scores_gemma":[0.02541033,0.007319375,0.0388398,0.03251224,0.001324719,0.1461952,0.003510607,0.00183565,0.6620503,0.00005146163,0.07718266,0.003767662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968041,0.001115866,0.0002454146,0.0006394774,0.0006840246,0.0001670525,0.0002808144,0.000006576376,0.00005668303],"genre_scores_gemma":[0.9974249,0.0001184595,0.0009789695,0.0002261464,0.000865109,0.000003614754,0.0002392828,0.00001482783,0.0001287068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3348294,"threshold_uncertainty_score":0.5062119,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108654445","doi":"10.1099/ijs.0.65208-0","title":"Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces","year":2008,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":351,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Patient Safety Institute","keywords":"Ruminococcus; Biology; Microbiology","retraction":null,"screen_n_in":null,"score":{"opus":0.01881869796321191,"gpt":0.2305827876866354,"spread":0.2117640897234235,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["metaepi_narrow","sts","research_integrity"],"category_scores_codex":[0.002908169,0.003406679,0.005709396,0.001993376,0.002144602,0.0004495243,0.003561945,0.002498352,0.0002148425],"category_scores_gemma":[0.0009300518,0.003242206,0.001448635,0.001280217,0.006347398,0.000324115,0.00228956,0.002501964,0.0001116744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008235115,"about_ca_system_score_gemma":0.001904636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002181135,"about_ca_topic_score_gemma":0.0006609104,"domain_scores_codex":[0.9806772,0.00209346,0.008551705,0.004143127,0.001783748,0.002750685],"domain_scores_gemma":[0.9826292,0.0008521891,0.00796788,0.003103627,0.004231085,0.00121595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003112227,0.002389311,0.05318103,0.002583364,0.007023274,0.0003204819,0.00214576,0.0005147815,0.9228933,0.001243264,0.004208124,0.0003850664],"study_design_scores_gemma":[0.04993022,0.01590849,0.3061987,0.01472975,0.01106178,0.04164724,0.004812351,0.00909991,0.5059828,0.007652056,0.01931636,0.01366032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9335065,0.04921388,0.001241112,0.002685577,0.003450415,0.00542095,0.004092845,0.0001490062,0.0002397202],"genre_scores_gemma":[0.983507,0.006865985,0.003244958,0.0004269303,0.001477931,0.00026784,0.003255878,0.0003896982,0.0005637921],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4169105,"threshold_uncertainty_score":0.9997993,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125201984","doi":"10.1099/ijs.0.63426-0","title":"Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":324,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Biology; Cellobiose; Maltose; 16S ribosomal RNA; Melibiose; Fructose; Fermentation; Biochemistry; Arabinose; Bacteria; Lactose; Botany; Sucrose; Xylose; Cellulose; Gene; Cellulase","retraction":null,"screen_n_in":null,"score":{"opus":0.01384250122668435,"gpt":0.24298631829631,"spread":0.2291438170696257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002906809,0.0002320787,0.000463624,0.000163565,0.00008756677,0.0000308069,0.0004292156,0.0001687799,0.0000492476],"category_scores_gemma":[0.0001157968,0.0001880269,0.0001797305,0.00006428987,0.0001750815,0.000008250719,0.0002064497,0.0001357283,0.00001972682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007817133,"about_ca_system_score_gemma":0.000114373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003694547,"about_ca_topic_score_gemma":0.00002492187,"domain_scores_codex":[0.9982968,0.0001925009,0.0008723254,0.0002863873,0.0001354198,0.0002165871],"domain_scores_gemma":[0.9984749,0.00008619606,0.000615869,0.0001786403,0.0005556795,0.00008874824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004104562,0.0001319341,0.002317654,0.0001965333,0.001276322,0.00002143429,0.0003775552,0.00007133713,0.9921523,0.00005496429,0.002878948,0.0001105973],"study_design_scores_gemma":[0.05993216,0.01313658,0.251338,0.02068988,0.004281918,0.0653652,0.02044129,0.004428364,0.3224021,0.008177696,0.2207184,0.009088371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9787793,0.01764688,0.0002441529,0.001939413,0.0007845665,0.0001344732,0.0002949142,0.00000335191,0.0001729829],"genre_scores_gemma":[0.9945022,0.001711195,0.00193872,0.0003626962,0.0008929609,0.00001262673,0.0001527448,0.00001741844,0.0004094118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6697502,"threshold_uncertainty_score":0.7667514,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149341297","doi":"10.1099/ijs.0.001123-0","title":"Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":317,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Vlaamse regering; Universiteit Gent; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Multilocus sequence typing; Biology; Lineage (genetic); Genetics; Burkholderia cepacia complex; Phylogenetics; Microbiology; Evolutionary biology; Gene; Burkholderia; Genotype; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.05170563135590257,"gpt":0.3088424450781021,"spread":0.2571368137221995,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008933285,0.0004031052,0.001205195,0.0003311384,0.0003064336,0.0001137343,0.0005590483,0.0001397398,0.0003377001],"category_scores_gemma":[0.0004996748,0.0002695184,0.000200225,0.0001757771,0.0009284834,0.0002575807,0.0002673111,0.0004290654,0.00002904956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000429292,"about_ca_system_score_gemma":0.0002050996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008418623,"about_ca_topic_score_gemma":0.00007695748,"domain_scores_codex":[0.9967378,0.0002632464,0.001607746,0.0004097423,0.000545873,0.0004356397],"domain_scores_gemma":[0.9967158,0.0005823052,0.001155482,0.0003434784,0.0009508108,0.0002521641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00124647,0.0003414556,0.004062699,0.00124214,0.0006554654,0.0001704104,0.0005140194,0.00006356999,0.9779545,0.003602349,0.01010286,0.0000440839],"study_design_scores_gemma":[0.03005038,0.004269673,0.6504325,0.02396868,0.001261555,0.2197514,0.007830075,0.006494851,0.005613191,0.002154855,0.04649179,0.001681062],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9766691,0.006134269,0.004326448,0.008667915,0.00121015,0.001560404,0.0006325628,0.00004073208,0.0007583646],"genre_scores_gemma":[0.9910994,0.0002227978,0.00636145,0.0007196181,0.000580736,0.00001386292,0.0002192418,0.00002440885,0.0007584493],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9723413,"threshold_uncertainty_score":0.9999757,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2980963357","doi":"10.1099/ijsem.0.003775","title":"A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":303,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Polyphyly; Genus; Taxonomy (biology); Evolutionary biology; Zoology; Phylogenetics; Genetics; Gene; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.02717076120021597,"gpt":0.263950560448846,"spread":0.23677979924863,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.002768564,0.001476515,0.003044471,0.0006127887,0.0007780769,0.0002685179,0.002489815,0.001189967,0.0002023747],"category_scores_gemma":[0.001066234,0.001060622,0.001304406,0.0005318475,0.002076457,0.0001594326,0.001500317,0.0009597883,0.00003124976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006785006,"about_ca_system_score_gemma":0.00193147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003160411,"about_ca_topic_score_gemma":0.0002999439,"domain_scores_codex":[0.9907339,0.0009444013,0.003921648,0.001725078,0.001074924,0.001600028],"domain_scores_gemma":[0.9904156,0.001044058,0.003376804,0.001456866,0.003099398,0.0006073269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004167093,0.0003886307,0.001939112,0.003369572,0.004675412,0.00002735928,0.002538615,0.0009181657,0.9729837,0.005348119,0.002129225,0.001514999],"study_design_scores_gemma":[0.09696858,0.03135946,0.06158506,0.01857733,0.0115808,0.05860486,0.03210909,0.02112137,0.218279,0.01269548,0.419057,0.01806198],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9157409,0.05263856,0.0149843,0.001586935,0.004023554,0.005504129,0.005192121,0.00002871617,0.0003007611],"genre_scores_gemma":[0.9777064,0.003541986,0.01356927,0.0004341265,0.002302011,0.0001885358,0.0004277464,0.0001610904,0.001668778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7547047,"threshold_uncertainty_score":0.9997984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156068910","doi":"10.1099/ijs.0.028118-0","title":"Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase","year":2010,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Alberta Innovates - Technology Futures","keywords":"Biology; Methane monooxygenase; 16S ribosomal RNA; Methanotroph; Bacteria; Nitrogenase; Botany; Biochemistry; Rhodospirillaceae; Microbiology; Anaerobic oxidation of methane; Gene; Enzyme; Nitrogen fixation","retraction":null,"screen_n_in":null,"score":{"opus":0.01724575514985683,"gpt":0.2562929141591008,"spread":0.239047159009244,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009700884,0.0003237778,0.0006391814,0.0003048528,0.00009812223,0.00006145054,0.0006806652,0.0003804785,0.0001459105],"category_scores_gemma":[0.0002849282,0.0002618424,0.0002317262,0.0001004837,0.0002088497,0.00007990737,0.000212079,0.0003493322,0.0000263382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003535833,"about_ca_system_score_gemma":0.0002801139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005787988,"about_ca_topic_score_gemma":0.00005447826,"domain_scores_codex":[0.9977627,0.0003552872,0.000942342,0.0004108369,0.0002056559,0.0003231223],"domain_scores_gemma":[0.9977052,0.00007705203,0.0008041278,0.0003906325,0.0008270281,0.000196026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004210939,0.0001575639,0.0006481469,0.0004756199,0.0005104903,0.00003180146,0.00008766568,0.00003676381,0.9955851,0.0002115682,0.001693175,0.0001409981],"study_design_scores_gemma":[0.007087972,0.002247972,0.01364707,0.002020003,0.001130483,0.05834167,0.001412909,0.0002189732,0.8543173,0.00139429,0.05624978,0.00193157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870675,0.00454705,0.002204825,0.0004773962,0.00511125,0.0003097926,0.000210294,0.00001303948,0.00005880841],"genre_scores_gemma":[0.9924613,0.0007394151,0.004311012,0.000350097,0.001402801,0.00001049443,0.0003215697,0.00003438291,0.0003689424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1412678,"threshold_uncertainty_score":0.9999834,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084382408","doi":"10.1099/ijs.0.070136-0","title":"Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.","year":2014,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":246,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clade; Class (philosophy); Division (mathematics); Order (exchange); Evolutionary biology; Genealogy; Genetics; Phylogenetics; Gene; Artificial intelligence; Arithmetic; Computer science; History","retraction":null,"screen_n_in":null,"score":{"opus":0.0233085881032018,"gpt":0.2992337996512939,"spread":0.2759252115480921,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001407802,0.0004020918,0.0008808242,0.0001367546,0.0006862187,0.0001374759,0.0005984738,0.0002677938,0.00002882723],"category_scores_gemma":[0.000718235,0.0002320017,0.0001203456,0.0001117808,0.001275197,0.0003472079,0.0006059458,0.00033572,6.6579e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008877658,"about_ca_system_score_gemma":0.0001425765,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004575819,"about_ca_topic_score_gemma":0.002067772,"domain_scores_codex":[0.9971628,0.0008916521,0.001040811,0.0004418562,0.0001420611,0.0003208323],"domain_scores_gemma":[0.9962317,0.002064003,0.001041998,0.0002495165,0.0002975804,0.0001151391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001623218,0.00009541474,0.004706984,0.0006077516,0.0007348119,0.000001629831,0.001344431,0.0001856544,0.9850189,0.005148003,0.0002454575,0.0002877522],"study_design_scores_gemma":[0.1159822,0.01881773,0.5709251,0.01327353,0.01008956,0.01871361,0.03371176,0.05289996,0.03330392,0.1015884,0.02365477,0.007039424],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886216,0.00362407,0.00231182,0.003101484,0.0006741061,0.001412069,0.0002376982,0.000008463293,0.000008683534],"genre_scores_gemma":[0.9957461,0.0005087585,0.002935544,0.0004442779,0.0002162359,0.00003149371,0.00007269298,0.000023653,0.00002124098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.951715,"threshold_uncertainty_score":0.9460754,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161103839","doi":"10.1099/ijs.0.02776-0","title":"Malassezia nana sp. nov., a novel lipid-dependent yeast species isolated from animals","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":237,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Malassezia; Biology; Internal transcribed spacer; Phylogenetic tree; Yeast; Genus; Microbiology; Botany; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01785588309247456,"gpt":0.2563487910669496,"spread":0.238492907974475,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001263364,0.000161746,0.0005177864,0.0001994748,0.00004656759,0.00002495217,0.0001644641,0.0000994212,0.0001887567],"category_scores_gemma":[0.00009305398,0.0001159457,0.0001784261,0.00005738234,0.00008920205,0.00010265,0.000058796,0.0001250676,0.0000703573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003126029,"about_ca_system_score_gemma":0.0001778927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000706795,"about_ca_topic_score_gemma":0.000008083152,"domain_scores_codex":[0.9986895,0.00004119857,0.0007490593,0.0001676707,0.0002008855,0.0001516994],"domain_scores_gemma":[0.9987408,0.00006716172,0.0004895023,0.0001105118,0.0004667202,0.000125298],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004032297,0.003179401,0.09096576,0.003243507,0.01024482,0.002497136,0.0008490446,0.000222037,0.87684,0.005437052,0.002390838,0.00009812075],"study_design_scores_gemma":[0.05051564,0.004192312,0.7511844,0.05071142,0.004222376,0.1217137,0.004112693,0.0003915141,0.003877161,0.005187992,0.002695817,0.001194957],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887576,0.005174109,0.002632729,0.001505554,0.00100248,0.0003156345,0.000395344,0.00001397326,0.0002026376],"genre_scores_gemma":[0.9972268,0.0002213844,0.001572072,0.0001813969,0.0004169188,0.000005071726,0.00007290547,0.00001205145,0.0002913349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8729628,"threshold_uncertainty_score":0.472813,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153285048","doi":"10.1099/ijs.0.63229-0","title":"Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":233,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Environment Research Council; Canadian Institute for Advanced Research","keywords":"Phylum; Biology; Environmental DNA; Clade; Taxon; Phylogenetic tree; Biodiversity; Phylogenetics; Protozoa; Zoology; Ecology; Evolutionary biology; Botany; Paleontology; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.006993834762135634,"gpt":0.2022830974250603,"spread":0.1952892626629247,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002916583,0.0001246295,0.000382311,0.000130709,0.000061199,0.000009714181,0.0003682713,0.0001404796,0.00005234201],"category_scores_gemma":[0.00003200577,0.0001111675,0.0002437603,0.00008896808,0.0002168983,0.00001423932,0.0001546488,0.00006735954,0.00001270667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001301782,"about_ca_system_score_gemma":0.00005070294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002302012,"about_ca_topic_score_gemma":0.000004321573,"domain_scores_codex":[0.9989057,0.0001270694,0.0005219889,0.0001797644,0.000143906,0.0001215547],"domain_scores_gemma":[0.9990393,0.00001824684,0.0005710511,0.0001374176,0.0001740661,0.00005992639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007441852,0.0004106305,0.2501234,0.0007272997,0.0051538,0.00007661585,0.0001563491,0.000686114,0.7389628,0.00069134,0.00223308,0.00003433139],"study_design_scores_gemma":[0.009558845,0.002758617,0.9091337,0.002180202,0.002543821,0.009166877,0.001917688,0.00001239297,0.0537371,0.005710172,0.002122777,0.001157789],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994148,0.002291807,0.001817516,0.0001961713,0.000317926,0.0002169528,0.0009648548,0.00000202672,0.00004470047],"genre_scores_gemma":[0.998205,0.0003744636,0.001002278,0.00008133386,0.00009185062,0.000002249957,0.0002184336,0.000002009223,0.00002240176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6852257,"threshold_uncertainty_score":0.4533277,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2506753654","doi":"10.1099/ijsem.0.001376","title":"Emended description of Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus and Mycobacterium abscessus subsp. bolletii and designation of Mycobacterium abscessus subsp. massiliense comb. nov.","year":2016,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Shared Health","funders":"","keywords":"Mycobacterium abscessus; Biology; Microbiology; Subspecies; Mycobacterium; Genetics; Bacteria; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.02218802618837088,"gpt":0.2633202072974533,"spread":0.2411321811090824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002073043,0.0009039431,0.002542955,0.001457811,0.0002370402,0.0001706215,0.0007880417,0.0007044933,0.0005595955],"category_scores_gemma":[0.000897027,0.0006744946,0.0004426764,0.0004390602,0.001197992,0.00118236,0.0004708472,0.0005783162,0.00003079716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005082143,"about_ca_system_score_gemma":0.0005573683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002207876,"about_ca_topic_score_gemma":0.00005899508,"domain_scores_codex":[0.9925638,0.0008269834,0.003610127,0.0009571931,0.001071189,0.0009707251],"domain_scores_gemma":[0.9904734,0.001262674,0.003342819,0.0006499456,0.003584516,0.0006866487],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005631165,0.0008621074,0.1001901,0.01449572,0.002043499,0.0003732895,0.000935945,0.000006159312,0.8716546,0.000580073,0.002733204,0.0004941262],"study_design_scores_gemma":[0.02793947,0.006335985,0.8365234,0.03356294,0.003194148,0.023974,0.003500122,0.0003417633,0.05623374,0.001696345,0.004284829,0.002413258],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830664,0.008291659,0.0009812095,0.002283174,0.002574824,0.001389419,0.0009976614,0.0000583105,0.0003573573],"genre_scores_gemma":[0.98942,0.007288055,0.001257691,0.0001808381,0.0007545004,0.00007521893,0.0002799041,0.0000874785,0.0006563216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8154209,"threshold_uncertainty_score":0.9995706,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109638827","doi":"10.1099/ijs.0.65634-0","title":"Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex","year":2008,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":230,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Vlaamse regering; Universiteit Gent; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Biology; Burkholderia; 16S ribosomal RNA; Burkholderia cepacia complex; Microbiology; Multilocus sequence typing; Gene; Genotype; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05003252555200895,"gpt":0.2287798060808477,"spread":0.1787472805288388,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.002604261,0.002049162,0.003766729,0.0004982775,0.001762632,0.0006636082,0.002920865,0.001077536,0.001396352],"category_scores_gemma":[0.0008503883,0.001103922,0.001092094,0.001052911,0.002486421,0.001184142,0.001443383,0.001431915,0.0001684836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006013314,"about_ca_system_score_gemma":0.0003139176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007500303,"about_ca_topic_score_gemma":0.0005575616,"domain_scores_codex":[0.9887257,0.001042639,0.004905864,0.001982154,0.001471369,0.001872295],"domain_scores_gemma":[0.9905553,0.001656458,0.004223146,0.0007964674,0.002000688,0.000767971],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007170521,0.0008097439,0.00392571,0.0008458167,0.002287589,0.0005159526,0.00180613,0.00005965129,0.9765244,0.001183454,0.01126159,0.00006296478],"study_design_scores_gemma":[0.01924242,0.003638685,0.6120723,0.01524482,0.004767375,0.1749885,0.02090629,0.001812396,0.03830207,0.002009628,0.09675656,0.01025899],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9754987,0.006729398,0.0002742737,0.00603642,0.005056462,0.002095415,0.003597303,0.0001983254,0.0005137521],"genre_scores_gemma":[0.9876847,0.002923154,0.002479651,0.001091524,0.00319299,0.0001502489,0.001139441,0.00006682589,0.001271485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9382223,"threshold_uncertainty_score":0.9995369,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155030936","doi":"10.1099/ijs.0.02578-0","title":"Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Canadian Institute for Advanced Research","keywords":"Biology; Taxon; Systematics; Monophyly; Cladistics; Phylogenetic tree; Clade; Evolutionary biology; Taxonomy (biology); Phylogenetics; Zoology; Botany; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01118382900774373,"gpt":0.2115542818175837,"spread":0.20037045280984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005744398,0.0001108464,0.0002407158,0.00009805912,0.00007141209,0.00003190485,0.0002741251,0.0001002652,0.00001277936],"category_scores_gemma":[0.0003804185,0.0000794364,0.00004617854,0.00006218626,0.0001493852,0.00001151104,0.0000606139,0.00008425028,0.000003148693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002270909,"about_ca_system_score_gemma":0.00006285943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003233335,"about_ca_topic_score_gemma":0.000006296797,"domain_scores_codex":[0.9987931,0.000390557,0.000484303,0.0001214972,0.0001022586,0.0001082734],"domain_scores_gemma":[0.9990957,0.00008198467,0.0003323441,0.000106607,0.0003540113,0.0000293269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003475743,0.0007869763,0.5290876,0.01355578,0.002434207,0.0003648833,0.004205861,0.00035266,0.3952429,0.04439007,0.009141759,0.00008974721],"study_design_scores_gemma":[0.02873891,0.007373198,0.441697,0.02678841,0.002173853,0.3510297,0.06762198,0.0005750782,0.02958759,0.02947712,0.01059453,0.00434269],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898564,0.007063029,0.001895102,0.0002339378,0.0004097302,0.0003252615,0.00004112513,0.000002074314,0.000173397],"genre_scores_gemma":[0.9988043,0.0004075915,0.0003773292,0.0001978227,0.00008430527,0.000005271903,0.00003457405,0.000005968765,0.00008287738],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3656553,"threshold_uncertainty_score":0.3239322,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104547142","doi":"10.1099/ijs.0.02346-0","title":"Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3′ end 16S rDNA and 5′ end 16S–23S ITS nucleotide sequences","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bacillus circulans; Bacillus sphaericus; Paenibacillus; Bacillus (shape); Bacillaceae; 16S ribosomal RNA; Bacillus anthracis; Bacillales; Phylogenetic tree; GenBank; Bacillus amyloliquefaciens; Microbiology; Bacillus cereus; Bacillus subtilis; Genetics; Bacteria; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04847307062835758,"gpt":0.2791609066101816,"spread":0.230687835981824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005543732,0.0001474734,0.0003874107,0.0001642736,0.0001109718,0.00003348882,0.0001876444,0.0001851255,0.00008309513],"category_scores_gemma":[0.0004337956,0.0001294719,0.00006665943,0.00006404213,0.0003234714,0.00002254645,0.00005617006,0.0001439315,0.000006394357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002874592,"about_ca_system_score_gemma":0.00007831319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007397035,"about_ca_topic_score_gemma":0.000009382616,"domain_scores_codex":[0.9980294,0.0004369814,0.001058179,0.000228032,0.0001344549,0.0001129977],"domain_scores_gemma":[0.9982728,0.0001865987,0.0008615825,0.0001368313,0.0004682183,0.0000740023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004732799,0.00007711364,0.1097008,0.0004465236,0.000721839,0.00000319652,0.0006578943,0.00008539412,0.8836797,0.003866045,0.0006313818,0.0000827773],"study_design_scores_gemma":[0.005035173,0.001030628,0.7151638,0.003471736,0.0009146975,0.004163116,0.007997041,0.0006412463,0.2440081,0.004751259,0.01166507,0.001158188],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9834732,0.01439113,0.0007215173,0.0003306415,0.0004479342,0.0001859276,0.000172671,0.000003762498,0.0002731433],"genre_scores_gemma":[0.9974663,0.0008792239,0.001006761,0.00002153243,0.00009567613,0.000004842456,0.0001908152,0.000009292615,0.0003255511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6396717,"threshold_uncertainty_score":0.527971,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148951508","doi":"10.1099/ijs.0.02328-0","title":"Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Dinoflagellate; Biology; Phylogenetic tree; Lineage (genetic); Evolutionary biology; Phylogenetics; Ribosomal RNA; Clade; Gene; Zoology; Genetics; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.01154845348439952,"gpt":0.193508608884866,"spread":0.1819601554004665,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002742145,0.0001166174,0.0002515633,0.00005955563,0.0000751751,0.00001489661,0.0002625898,0.0001204898,0.000009752952],"category_scores_gemma":[0.0001931554,0.00008156876,0.0001143939,0.00003057674,0.0002178667,0.00001013835,0.0001515252,0.00009715407,0.00000109529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002013958,"about_ca_system_score_gemma":0.00004420894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001538545,"about_ca_topic_score_gemma":0.00001059594,"domain_scores_codex":[0.999113,0.0002159432,0.0003361672,0.0001349161,0.00009284192,0.0001071231],"domain_scores_gemma":[0.9990563,0.00004769341,0.0005077905,0.0001183233,0.0002336331,0.00003623896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002209247,0.00007864661,0.4392967,0.001149691,0.0005143596,0.00001760639,0.0002048,0.0000173835,0.5579257,0.0003192298,0.0002204126,0.00003455167],"study_design_scores_gemma":[0.003798879,0.000861246,0.6967628,0.003887057,0.0002591449,0.008656085,0.001378721,0.00005023046,0.2792663,0.001166436,0.003349372,0.000563714],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946339,0.004255524,0.0002513349,0.0001142901,0.0003118872,0.0002614091,0.00007798135,0.000001533886,0.00009216662],"genre_scores_gemma":[0.9989335,0.0001682518,0.0004214965,0.00004538942,0.0000702034,0.000004562607,0.000007074068,0.000005832874,0.0003437196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2786594,"threshold_uncertainty_score":0.3326277,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4224885279","doi":"10.1099/ijsem.0.005353","title":"Revision of the ‘Candidatus Phytoplasma’ species description guidelines","year":2022,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Patient Safety Institute","keywords":"Phytoplasma; Biology; 16S ribosomal RNA; Candidatus; Gene; Genetics; Strain (injury); Genome; Ribosomal RNA; Whole genome sequencing; Genus; Botany; Computational biology; Polymerase chain reaction; Restriction fragment length polymorphism","retraction":null,"screen_n_in":null,"score":{"opus":0.0388969410177427,"gpt":0.2374846137980416,"spread":0.1985876727802989,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004502833,0.00007340924,0.0002432111,0.00002923341,0.000146647,0.00001262096,0.0003753745,0.00003075875,0.0002399628],"category_scores_gemma":[0.000119196,0.00002603716,0.0001396887,0.00009016135,0.00006616117,0.00007635963,0.0001844817,0.0001045746,0.000001754255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006451739,"about_ca_system_score_gemma":0.00001868025,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004976381,"about_ca_topic_score_gemma":0.000009482505,"domain_scores_codex":[0.9988256,0.0001833191,0.0006391374,0.00008573134,0.0001834628,0.00008280292],"domain_scores_gemma":[0.9987682,0.0001190353,0.0006268997,0.00003866729,0.0004241814,0.00002302093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000190762,0.000164682,0.06572972,0.0005020989,0.0002069417,0.00001716562,0.0003365161,0.0002246569,0.9036602,0.001331521,0.02680417,0.0008315279],"study_design_scores_gemma":[0.003350137,0.002994907,0.3086221,0.01311354,0.0005562609,0.04843327,0.01394521,0.001197922,0.01722169,0.006268686,0.5831273,0.001169013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993987,0.002413652,0.00001769927,0.00186689,0.001308985,0.000129477,0.0001705972,0.000003117436,0.0001026349],"genre_scores_gemma":[0.9988707,0.0001853053,0.0001909271,0.0001647796,0.0002405526,0.000002466626,0.0000176531,5.944308e-7,0.0003269711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8864385,"threshold_uncertainty_score":0.2627425,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2072177407","doi":"10.1099/ijs.0.63216-0","title":"On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Genome Atlantic; Michael Smith Health Research BC; Genome Canada","keywords":"Biology; Monophyly; Plastid; Phylogenetics; Protist; Lineage (genetic); Evolutionary biology; Gene; Nuclear gene; Genetics; Genome; Clade; Chloroplast","retraction":null,"screen_n_in":null,"score":{"opus":0.01364854633390017,"gpt":0.2299553138746379,"spread":0.2163067675407378,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003147823,0.00009009476,0.0002405931,0.00008321321,0.00003785473,0.000004477406,0.000316577,0.00008775185,0.000025685],"category_scores_gemma":[0.0001507092,0.00006122627,0.0001255644,0.00003430801,0.0001753446,0.00000743956,0.00008603386,0.00006914286,0.000002137097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002288833,"about_ca_system_score_gemma":0.00006279141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009454096,"about_ca_topic_score_gemma":0.000001785163,"domain_scores_codex":[0.9991193,0.0001395615,0.0004786875,0.00009039325,0.00009127205,0.00008077301],"domain_scores_gemma":[0.9988545,0.00008125963,0.0005960087,0.0001051733,0.000339712,0.00002330219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001901842,0.00007897125,0.002411419,0.0003570686,0.0003878104,0.000002722504,0.00007618456,0.0003916994,0.9945337,0.001314541,0.0002384959,0.00001718355],"study_design_scores_gemma":[0.003013779,0.002776576,0.0260907,0.007450046,0.0003172819,0.004248013,0.0009367482,0.001261296,0.9483992,0.004513322,0.000472467,0.0005205358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960451,0.002772301,0.0005589689,0.0002055959,0.0001312542,0.0001665838,0.00006627099,8.390719e-7,0.00005309166],"genre_scores_gemma":[0.9985294,0.00005609874,0.001140925,0.00007991127,0.0001380709,0.000001715206,0.000008564861,0.000004323764,0.00004094633],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04613448,"threshold_uncertainty_score":0.2496735,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156828929","doi":"10.1099/ijs.0.63343-0","title":"Mycobacterium pseudoshottsii sp. nov., a slowly growing chromogenic species isolated from Chesapeake Bay striped bass (Morone saxatilis)","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Centre for Disease Control","funders":"National Institute of General Medical Sciences; U.S. Geological Survey; Institut National de la Santé et de la Recherche Médicale; National Institutes of Health; Commonwealth of Virginia","keywords":"Biology; Microbiology; Mycobacterium; 16S ribosomal RNA; Mycolic acid; Mycobacterium ulcerans; Gene; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01800446975296083,"gpt":0.2597041462706711,"spread":0.2416996765177102,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005933216,0.0002653629,0.0008831171,0.000406482,0.00008415328,0.00006015652,0.0003612504,0.0001998807,0.001207948],"category_scores_gemma":[0.000598851,0.0002051063,0.0002997904,0.000127321,0.0001642248,0.000393148,0.0001333983,0.0003437904,0.0001072286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004059814,"about_ca_system_score_gemma":0.0002839551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000043963,"about_ca_topic_score_gemma":0.00001998503,"domain_scores_codex":[0.997405,0.0002412871,0.001352199,0.0002849904,0.0003706457,0.0003459121],"domain_scores_gemma":[0.9974297,0.0004327798,0.000713238,0.000219289,0.0009485942,0.0002564173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001448936,0.000435244,0.0348048,0.001594874,0.002061128,0.0003174603,0.0004129267,0.00001701467,0.9516792,0.0001513277,0.006923926,0.0001531436],"study_design_scores_gemma":[0.02448981,0.004103934,0.7955638,0.0393304,0.002384911,0.06994921,0.0028809,0.003192708,0.02173815,0.0005082611,0.03406503,0.00179289],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871857,0.005449094,0.0008711464,0.004571642,0.0009353544,0.0004161919,0.0002927975,0.00002238196,0.0002556619],"genre_scores_gemma":[0.9934568,0.0008880829,0.002527081,0.0005895032,0.001677792,0.00001526335,0.0002766354,0.0000231364,0.0005456931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9299411,"threshold_uncertainty_score":0.9997051,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165401419","doi":"10.1099/ijs.0.000251","title":"Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources","year":2015,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Children's Health Foundation; University of Queensland; University of Oxford; National Health and Medical Research Council; Universiteit Gent; Cystic Fibrosis Canada; Wellcome Trust; Menzies School of Health Research; Children's Medical Research","keywords":"Biology; Burkholderia cepacia complex; Burkholderia; 16S ribosomal RNA; Microbiology; Burkholderia pseudomallei; Sequence analysis; Phylogenetic tree; Bacteria; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.04787911461107428,"gpt":0.2782324196666295,"spread":0.2303533050555552,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005516603,0.0003849675,0.001022106,0.0004011005,0.0001969718,0.0001240753,0.0002306127,0.0002138015,0.000341309],"category_scores_gemma":[0.0001004572,0.0003143013,0.000157722,0.00007638136,0.0005922172,0.0003157279,0.0002288305,0.000306149,0.00001425893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002781862,"about_ca_system_score_gemma":0.0001034434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004691052,"about_ca_topic_score_gemma":0.00003354982,"domain_scores_codex":[0.9975324,0.000153489,0.001257234,0.0004063696,0.0003440173,0.0003065166],"domain_scores_gemma":[0.9981304,0.00017524,0.0007969725,0.0002265532,0.0003183405,0.0003524343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002484268,0.0003743387,0.04258105,0.0005654835,0.0009747812,0.00008381634,0.001059372,0.000010343,0.9497303,0.0005927242,0.003748404,0.00003097195],"study_design_scores_gemma":[0.05235305,0.00478096,0.6508694,0.01785461,0.00398795,0.115744,0.02819956,0.0008150354,0.0177477,0.002743622,0.101853,0.00305106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913211,0.00389991,0.0006748266,0.001141279,0.001677172,0.0004729659,0.000577204,0.00002589576,0.0002096326],"genre_scores_gemma":[0.9946076,0.0002962463,0.002620406,0.0002545577,0.001538239,0.00001639176,0.0002911591,0.0000335464,0.0003418193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9319826,"threshold_uncertainty_score":0.9999309,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139425143","doi":"10.1099/ijs.0.02210-0","title":"Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"North Carolina State University","keywords":"Biology; Phylogenetic tree; Phylogenetics; Genetics; Gene; Evolutionary biology; Phylogenetic relationship; Microbiology; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.02149801154425091,"gpt":0.2723989627748612,"spread":0.2509009512306103,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005253394,0.0002001006,0.000733956,0.0003629398,0.00006196047,0.00001755602,0.0001768236,0.00009983407,0.00007710575],"category_scores_gemma":[0.0003092381,0.0001476394,0.0001161723,0.0001068625,0.0003169742,0.0000546398,0.00003314904,0.0001675137,0.000003908953],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001087574,"about_ca_system_score_gemma":0.0001832226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009100901,"about_ca_topic_score_gemma":0.00000517071,"domain_scores_codex":[0.9979541,0.0003093604,0.001062121,0.0002215078,0.0002693904,0.0001835329],"domain_scores_gemma":[0.9980222,0.0003086887,0.0007727603,0.0001624086,0.0006373327,0.00009658444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0020494,0.001910545,0.167125,0.003923134,0.001455372,0.0005692107,0.001112742,0.000940103,0.818793,0.001179079,0.0008726202,0.00006971783],"study_design_scores_gemma":[0.05589524,0.03866544,0.6303101,0.04071974,0.00425369,0.03332101,0.03405818,0.002334085,0.1495585,0.002183012,0.005934088,0.002766933],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958318,0.001907472,0.0006839458,0.0002093318,0.0004403954,0.0006393768,0.00005372163,0.00000599819,0.0002279792],"genre_scores_gemma":[0.9982058,0.0001088242,0.001300314,0.0001415695,0.0001072964,0.00001130221,0.000006269022,0.00001209756,0.0001065499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6692345,"threshold_uncertainty_score":0.6020558,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150824165","doi":"10.1099/ijs.0.038927-0","title":"Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Geomagnetism and Paleomagnetism Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Fondation pour la Recherche Médicale; National Science Foundation","keywords":"Alphaproteobacteria; Biology; Magnetotactic bacteria; Magnetosome; Sporangium; Bacteria; Thiosulfate; Strain (injury); Lineage (genetic); Microbiology; Botany; 16S ribosomal RNA; Biochemistry; Paleontology; Sulfur; Gene; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01581425336863003,"gpt":0.2338702965771749,"spread":0.2180560432085449,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009882882,0.0005274506,0.0008067866,0.0001840451,0.0002661284,0.00005863085,0.001192795,0.0003333169,0.0005603631],"category_scores_gemma":[0.0003906067,0.0003282786,0.0004475255,0.0001755917,0.0007508934,0.00007021739,0.001561825,0.0003445398,0.00003463274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000105067,"about_ca_system_score_gemma":0.0001733635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001750731,"about_ca_topic_score_gemma":0.0001512989,"domain_scores_codex":[0.996538,0.0004659031,0.001512044,0.0004627644,0.0004043728,0.0006168538],"domain_scores_gemma":[0.9964903,0.000243889,0.001608432,0.0007514951,0.000724124,0.0001817806],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009083741,0.0004738487,0.1303932,0.001792175,0.0007583383,0.00002815911,0.0003650986,0.00004519565,0.8561428,0.0001038783,0.008750687,0.0002382279],"study_design_scores_gemma":[0.006567041,0.002079922,0.9068597,0.002157565,0.0009724388,0.02072935,0.001115627,0.0001404132,0.02391252,0.00008753153,0.03414467,0.001233253],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823624,0.01032334,0.0002903068,0.001238345,0.002702331,0.001848383,0.0004665023,0.00001152097,0.0007567893],"genre_scores_gemma":[0.9912881,0.000732868,0.001297257,0.0003318251,0.001109869,0.0001661345,0.0001649718,0.00004471119,0.004864294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8322303,"threshold_uncertainty_score":0.9999169,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146125851","doi":"10.1099/ijs.0.020149-0","title":"Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa","year":2010,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Russian Academy of Sciences; Max-Planck-Gesellschaft","keywords":"Biology; Methanotroph; Methane monooxygenase; Alphaproteobacteria; 16S ribosomal RNA; Botany; Methanol dehydrogenase; Strain (injury); Bacteria; Microbiology; Biochemistry; Anaerobic oxidation of methane; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01385483003496941,"gpt":0.2455435766913233,"spread":0.2316887466563539,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007814436,0.0001768089,0.0004127467,0.0001309487,0.00007294575,0.00002056806,0.0002617693,0.0001834322,0.00001763045],"category_scores_gemma":[0.0004670876,0.0001165446,0.0001551696,0.00009143553,0.0002544125,0.00003135285,0.0001381784,0.0002072257,0.000001636776],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001755867,"about_ca_system_score_gemma":0.0001033792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004315968,"about_ca_topic_score_gemma":0.00002979343,"domain_scores_codex":[0.9983759,0.0003615367,0.0007571352,0.0002061158,0.0001399228,0.0001594207],"domain_scores_gemma":[0.9982241,0.00006711776,0.0008044963,0.00016086,0.0006777071,0.00006574289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002109868,0.00005162681,0.00058122,0.0003388837,0.0004764778,0.000003758688,0.0002717889,0.00005744966,0.9971783,0.0002741301,0.0003935406,0.0001618831],"study_design_scores_gemma":[0.003908979,0.0007193731,0.017615,0.001728887,0.0009867321,0.009621361,0.001922165,0.0003779508,0.9550105,0.00128875,0.006230348,0.0005899674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882514,0.004094368,0.005431313,0.0003158906,0.001533568,0.000248889,0.00009825028,0.000003183411,0.00002308335],"genre_scores_gemma":[0.9945472,0.0002459747,0.004666963,0.0001187394,0.0002560293,0.000008922069,0.00003178846,0.00001153652,0.0001128777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04216777,"threshold_uncertainty_score":0.475255,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097965388","doi":"10.1099/ijs.0.64865-0","title":"Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena","year":2007,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Tetrahymena; Intraspecific competition; Interspecific competition; DNA barcoding; Tetrahymena pyriformis; Zoology; Botany; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01582835249480209,"gpt":0.2507941583950982,"spread":0.2349658059002961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002840872,0.00009216634,0.0002897444,0.0000785771,0.00003971144,0.000003355434,0.0002845644,0.00005744795,0.000003038386],"category_scores_gemma":[0.00008497525,0.00006012527,0.0001021755,0.00004311615,0.0001281047,0.000001589427,0.0001473515,0.00005811467,3.224472e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000173775,"about_ca_system_score_gemma":0.00003587644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001623575,"about_ca_topic_score_gemma":0.00001050562,"domain_scores_codex":[0.9989197,0.00009501358,0.0007130355,0.0000971963,0.00008165746,0.00009336976],"domain_scores_gemma":[0.998548,0.0000953635,0.0006431752,0.0001112055,0.0005799388,0.00002232892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000136086,0.0001705945,0.04119857,0.0004258189,0.0008310364,0.000003177256,0.0007026278,0.0001420387,0.956143,0.00006013887,0.0001420378,0.000044837],"study_design_scores_gemma":[0.0100471,0.007650508,0.7369915,0.006375773,0.0009580357,0.008892566,0.05422214,0.0001649795,0.1697669,0.001045262,0.002999114,0.0008861309],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922493,0.006711743,0.0002154541,0.00004625302,0.0005069957,0.0002057966,0.00002345152,3.967805e-7,0.00004066482],"genre_scores_gemma":[0.9994063,0.0001803933,0.0002433429,0.00003385737,0.0000965307,0.000001643775,0.000002182835,0.000004822566,0.00003088062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7863761,"threshold_uncertainty_score":0.2451837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121841199","doi":"10.1099/ijs.0.041202-0","title":"‘Candidatus Phytoplasma pruni’, a novel taxon associated with X-disease of stone fruits, Prunus spp.: multilocus characterization based on 16S rRNA, secY, and ribosomal protein genes","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":129,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Phytoplasma; Biology; 16S ribosomal RNA; Phylogenetic tree; Genetics; Ribosomal RNA; Lineage (genetic); Phylogenetics; Candidatus; Gene; Mollicutes; Ribosomal DNA; Restriction fragment length polymorphism; Polymerase chain reaction; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01545898385500169,"gpt":0.2054076319176351,"spread":0.1899486480626334,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003323493,0.0001681241,0.0003905323,0.00007016164,0.00008326882,0.00002165079,0.0001576325,0.00009848559,0.00004198111],"category_scores_gemma":[0.0001181504,0.00007386319,0.00007356956,0.00008856877,0.0001073734,0.0001999629,0.00004043559,0.0001083764,0.000002200608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006609651,"about_ca_system_score_gemma":0.00003663478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005806036,"about_ca_topic_score_gemma":0.0000147852,"domain_scores_codex":[0.9987817,0.0001382662,0.0005355326,0.0001501448,0.0001969891,0.0001973597],"domain_scores_gemma":[0.998464,0.0001734065,0.0007929208,0.0000432382,0.0003922149,0.0001341615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006100326,0.0006103396,0.1254052,0.0004913083,0.0001983212,0.00001707042,0.0001037512,0.00003805511,0.8721135,0.0001241823,0.00003098471,0.0002572666],"study_design_scores_gemma":[0.002515834,0.001248265,0.9751455,0.007633854,0.0001941987,0.0008632682,0.0002234566,0.002257043,0.008698533,0.00004256238,0.0007591504,0.0004183697],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973703,0.00082427,0.0001451834,0.0003533607,0.0002309689,0.0003998693,0.0006460547,0.000008216843,0.00002179185],"genre_scores_gemma":[0.9991226,0.00004228841,0.0002653267,0.00007548765,0.0002215394,0.00001913105,0.0001823152,0.000002339552,0.00006898466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8634149,"threshold_uncertainty_score":0.3012054,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147982865","doi":"10.1099/ijs.0.008045-0","title":"Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Thiosulfate; Biology; Fermentation; Thermophile; Heterotroph; Biochemistry; Food science; Strain (injury); Microbiology; Bacteria; Sulfur; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.009791147338951714,"gpt":0.2336016086085683,"spread":0.2238104612696166,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002628985,0.0001986209,0.0003782568,0.0001174619,0.00008800066,0.00002869304,0.0003452135,0.0001614826,0.00001890629],"category_scores_gemma":[0.000078895,0.0001608701,0.0001302756,0.00004727589,0.0001017999,0.000009162029,0.00007238657,0.0001113988,0.000008253307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005086203,"about_ca_system_score_gemma":0.00006922177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002501193,"about_ca_topic_score_gemma":0.00000956539,"domain_scores_codex":[0.9985505,0.00017682,0.00069258,0.0002929751,0.0001085976,0.0001785352],"domain_scores_gemma":[0.998728,0.00002045837,0.0004598956,0.0002141138,0.0005032799,0.00007421338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003146835,0.0001289699,0.0006067695,0.00008661387,0.0004783929,0.00001313187,0.0001656497,0.0002187988,0.9969625,0.0000455009,0.0006014105,0.0003775429],"study_design_scores_gemma":[0.03049642,0.03313584,0.4576837,0.01744438,0.00347191,0.07663928,0.0070319,0.00454643,0.3089862,0.01922338,0.03325922,0.008081323],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890558,0.008220149,0.0003982579,0.0009463013,0.001122739,0.0001431101,0.00006202378,0.000004042522,0.00004754433],"genre_scores_gemma":[0.996076,0.001124409,0.00132547,0.0003437095,0.0008828231,0.000005723672,0.00009664102,0.00001261978,0.0001325837],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6879763,"threshold_uncertainty_score":0.6560091,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170789747","doi":"10.1099/ijs.0.63785-0","title":"Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Actinobacteria; Phylum; Ribosomal RNA; Genetics; Bacteria; Indel; 23S ribosomal RNA; 16S ribosomal RNA; Gene; RNA; Ribosome; Genotype","retraction":null,"screen_n_in":null,"score":{"opus":0.01641654467499426,"gpt":0.2309761721330183,"spread":0.214559627458024,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000262808,0.00009241528,0.0002564685,0.00005889817,0.00002780368,0.000008052063,0.0002818119,0.00007676922,0.000008971307],"category_scores_gemma":[0.0001018276,0.00006095241,0.00008080778,0.00002819107,0.000142657,0.00000352037,0.0001043561,0.00006904371,9.564203e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002561368,"about_ca_system_score_gemma":0.0000721376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008220346,"about_ca_topic_score_gemma":0.00002781389,"domain_scores_codex":[0.9991005,0.0001443464,0.0004935127,0.0001003453,0.00006958135,0.00009167993],"domain_scores_gemma":[0.9989355,0.00002987003,0.0007039048,0.00009559053,0.0002154852,0.0000196837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008146472,0.00004675987,0.05084005,0.000338226,0.0001734119,0.000002705511,0.0001169953,0.00002707901,0.9482133,0.00003711821,0.0001006632,0.00002220167],"study_design_scores_gemma":[0.002518646,0.0004326974,0.8319848,0.006528179,0.0001050347,0.004174847,0.002124996,0.00008520018,0.1486152,0.0006343308,0.002386276,0.0004097786],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965077,0.002150012,0.00003137714,0.000711354,0.0003327038,0.0001940082,0.00004607348,4.378822e-7,0.00002633307],"genre_scores_gemma":[0.999247,0.0001537276,0.0002548632,0.00009120945,0.0001511287,0.00000835209,0.000004237056,0.000004451586,0.00008503389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7995981,"threshold_uncertainty_score":0.2485567,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136220295","doi":"10.1099/ijs.0.001792-0","title":"Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I)","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clostridia; Phylogenetic tree; Clostridiales; Clostridium; Clade; Genetics; Phylogenetics; Ribosomal RNA; 16S ribosomal RNA; Evolutionary biology; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.03515610540117838,"gpt":0.2859530876670681,"spread":0.2507969822658897,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005359717,0.0001075326,0.0002825173,0.0001459016,0.00004252079,0.00002319717,0.0002605453,0.00009820561,0.000005053033],"category_scores_gemma":[0.0002449571,0.00007656021,0.0000913476,0.00007070618,0.00009332973,0.0000120156,0.00006186161,0.00007439622,9.368976e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002605209,"about_ca_system_score_gemma":0.00004407004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007630816,"about_ca_topic_score_gemma":0.000003612769,"domain_scores_codex":[0.9986734,0.0001530488,0.0008121978,0.0001654799,0.0001088005,0.00008711587],"domain_scores_gemma":[0.9981139,0.00006255748,0.001037092,0.0001660565,0.0005821659,0.00003828085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001397649,0.00007767897,0.000620525,0.000220962,0.0001308641,9.059061e-7,0.00007897287,0.000145802,0.9979325,0.00007942609,0.0004961536,0.00007647941],"study_design_scores_gemma":[0.00191093,0.0007567082,0.1122394,0.001987875,0.0001976084,0.001420382,0.001654828,0.0002621204,0.8780543,0.0002083521,0.0009645734,0.0003429552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928396,0.002859811,0.002691279,0.0008460379,0.0002813702,0.0003466086,0.0001267378,0.000001737387,0.000006802502],"genre_scores_gemma":[0.9988043,0.000116233,0.0007284298,0.00006869821,0.0001830443,0.000003382211,0.00003896716,0.000004796217,0.0000521747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1198782,"threshold_uncertainty_score":0.3122035,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168044110","doi":"10.1099/ijs.0.65191-0","title":"Bacillus velezensis is a later heterotypic synonym of Bacillus amyloliquefaciens","year":2008,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Beef Cattle Research Council; Food Industry Research and Development Institute","keywords":"Bacillus amyloliquefaciens; Biology; Strain (injury); Microbiology; Gene; Genetics; Bacteria; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01762178124305444,"gpt":0.251001288959565,"spread":0.2333795077165105,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003537049,0.0001498949,0.0004296832,0.0001630563,0.00006267276,0.000009478837,0.000341549,0.0001758752,0.0001306682],"category_scores_gemma":[0.0001552434,0.0001152337,0.0001868907,0.00005836865,0.0003097547,0.00001356767,0.0001356418,0.0001121843,0.00001673693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004633729,"about_ca_system_score_gemma":0.0001593467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001104314,"about_ca_topic_score_gemma":0.000002386091,"domain_scores_codex":[0.9985222,0.0001465212,0.0007698507,0.0001878156,0.0001780108,0.0001955583],"domain_scores_gemma":[0.9983515,0.00004748399,0.0004403733,0.0001702035,0.0009048959,0.00008560532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004999317,0.0001135696,0.003567754,0.0008648954,0.0006386102,0.00005336327,0.0003729214,0.00002520591,0.9902306,0.00005391515,0.003419247,0.0001599819],"study_design_scores_gemma":[0.02042515,0.01124108,0.0827293,0.01175199,0.0007139643,0.2078282,0.001896291,0.0008026063,0.5452648,0.001594728,0.1125748,0.003177123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943063,0.003648277,0.0006487128,0.0002722538,0.000617424,0.0001783839,0.0001305017,0.000002583205,0.0001956029],"genre_scores_gemma":[0.9970622,0.001276713,0.0005941962,0.0001569377,0.000246078,0.000005118847,0.0000309204,0.00001109575,0.000616734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4449658,"threshold_uncertainty_score":0.4699093,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768581843","doi":"10.1099/ijsem.0.002492","title":"Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses","year":2017,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":117,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"","keywords":"Biology; Clavibacter michiganensis; Subspecies; Housekeeping gene; Whole genome sequencing; Microbiology; Locus (genetics); Genome; Genetics; Sequence analysis; Gene; Bacteria; Zoology; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.1346277125427969,"gpt":0.3060315335324812,"spread":0.1714038209896843,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004042973,0.00009876004,0.0003591247,0.00003828898,0.0001435501,0.00002648268,0.0003992484,0.00006242099,0.00002709813],"category_scores_gemma":[0.0003111728,0.00003490985,0.00008891369,0.00003040738,0.0003688082,0.0001051854,0.00009188672,0.0000726964,0.000002363025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002456259,"about_ca_system_score_gemma":0.00001113584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003466072,"about_ca_topic_score_gemma":0.00009420698,"domain_scores_codex":[0.998964,0.0001515794,0.0005791105,0.0001137348,0.0001086054,0.00008303108],"domain_scores_gemma":[0.9977671,0.0004966115,0.001240038,0.00007666178,0.0003948901,0.00002471562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005412111,0.00003992212,0.007582794,0.0001337119,0.0002200591,0.000003961587,0.0001801257,0.000001232519,0.991465,0.0001583991,0.00008475097,0.00007594639],"study_design_scores_gemma":[0.0002992561,0.0002540012,0.9883676,0.001747487,0.0001228767,0.0006397025,0.001980972,0.00006750692,0.005915307,0.0001597922,0.0003250087,0.0001205596],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937783,0.001032913,0.000009836414,0.004396327,0.0001765815,0.0001203424,0.0004401703,0.000002014971,0.0000434393],"genre_scores_gemma":[0.9992164,0.0003855256,0.000190124,0.00004905472,0.00007746839,0.00000298997,0.00002559261,6.847463e-7,0.0000521177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9855497,"threshold_uncertainty_score":0.1423582,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043020295","doi":"10.1099/ijs.0.046011-0","title":"Pectobacterium aroidearum sp. nov., a soft rot pathogen with preference for monocotyledonous plants","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Biology; 16S ribosomal RNA; Pectobacterium; Pectobacterium carotovorum; Subspecies; Ribosomal RNA; Chemotaxonomy; Microbiology; Botany; Gene; Strain (injury); Fatty acid; Bacteria; Taxonomy (biology); Genetics; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03102727616258818,"gpt":0.2130549515592204,"spread":0.1820276753966322,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000402422,0.0001555659,0.0004052577,0.00003655161,0.00009584359,0.00002694342,0.0002859225,0.00008533699,0.00003430031],"category_scores_gemma":[0.0000878557,0.00005909246,0.00008692741,0.00003980529,0.00007452122,0.000211229,0.00007227687,0.00008491068,0.00001113914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006171797,"about_ca_system_score_gemma":0.00002261527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001051965,"about_ca_topic_score_gemma":0.00002503897,"domain_scores_codex":[0.9988621,0.0001076998,0.0005234129,0.000135719,0.0001083768,0.0002626982],"domain_scores_gemma":[0.9986572,0.0003818694,0.0005358577,0.00003624544,0.0003041546,0.00008473246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004963276,0.0001513975,0.03071936,0.0003832985,0.00041097,0.00001319351,0.0002584282,0.000002409239,0.9664344,0.0001462032,0.0006539814,0.0003300337],"study_design_scores_gemma":[0.003596946,0.003129291,0.8909582,0.008508031,0.0005320256,0.06593607,0.004129009,0.0001123024,0.004005636,0.0009016489,0.01687049,0.001320298],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952449,0.002216807,0.0002122819,0.0004695029,0.0006497973,0.0003890566,0.0007705689,0.0000115398,0.00003554244],"genre_scores_gemma":[0.9980544,0.0001324461,0.0009589172,0.00008913767,0.0005469364,0.00003355126,0.0001163854,0.000001601192,0.00006655386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9624287,"threshold_uncertainty_score":0.240972,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116535661","doi":"10.1099/ijs.0.63539-0","title":"Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase β-subunit","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Phylogenetic tree; Phylogenetics; Pantoea; Providencia; 16S ribosomal RNA; Genetics; Ribosomal RNA; Housekeeping gene; Sequence analysis; GenBank; Gene; Enterobacteriaceae; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.01301968794762262,"gpt":0.252254383958556,"spread":0.2392346960109334,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002299341,0.0001165907,0.0002158835,0.0001050718,0.00005279113,0.00002184806,0.000274286,0.00009057036,0.00002463424],"category_scores_gemma":[0.00008587768,0.00007755716,0.00009897607,0.00003170997,0.0001296306,0.00001577478,0.0001030564,0.00008703001,0.000002115848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004085417,"about_ca_system_score_gemma":0.0000612574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003555856,"about_ca_topic_score_gemma":0.000008083204,"domain_scores_codex":[0.9989339,0.00021612,0.000485158,0.0001347791,0.0001164461,0.0001136355],"domain_scores_gemma":[0.9990786,0.00005189529,0.0004070509,0.0001380168,0.0002803251,0.00004405436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002139984,0.00007992621,0.02611809,0.0003718113,0.0001588247,0.000001922715,0.00007254933,0.00007410604,0.9725041,0.00003836726,0.0001367534,0.0002295056],"study_design_scores_gemma":[0.008893432,0.00324506,0.4202902,0.01128072,0.0003073609,0.006060256,0.001304131,0.001531704,0.5345538,0.0001960988,0.01136234,0.0009749344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977105,0.0008640917,0.0004036782,0.0004133195,0.0003331534,0.0001655055,0.00006901309,0.000001682121,0.00003908859],"genre_scores_gemma":[0.9988851,0.0002549017,0.0003301057,0.0001734765,0.0002363398,0.000005045326,0.0000272754,0.000007850642,0.00007989371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4379504,"threshold_uncertainty_score":0.3162689,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121469939","doi":"10.1099/ijs.0.02790-0","title":"Sulfurihydrogenibium azorense, sp. nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Fundação para a Ciência e a Tecnologia; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; 16S ribosomal RNA; Microaerophile; Thermophile; Sulfur; Oxidizing agent; Botany; Gene; Biochemistry; Bacteria; Chemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01375085189056387,"gpt":0.2239320087991922,"spread":0.2101811569086283,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006924291,0.0001744655,0.0004045124,0.0001180449,0.0001273043,0.00002199313,0.0008926851,0.0001621969,0.0003645621],"category_scores_gemma":[0.000113485,0.0001205697,0.0001344398,0.0001033564,0.0004173498,0.0001572346,0.0002264986,0.0003689434,0.00009159552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002149916,"about_ca_system_score_gemma":0.00004991016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007829718,"about_ca_topic_score_gemma":0.0003937191,"domain_scores_codex":[0.998305,0.0003610138,0.0007898633,0.0001876529,0.0001282752,0.0002282088],"domain_scores_gemma":[0.9988582,0.0003740533,0.0004975068,0.0001917381,0.00003328793,0.0000452817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003979492,0.0003011242,0.004143518,0.0001019011,0.0002491179,0.0002156916,0.002927148,0.001240578,0.9887204,0.000241713,0.001429339,0.00003155361],"study_design_scores_gemma":[0.04287058,0.004348783,0.5411416,0.01736933,0.001397496,0.1127596,0.01450302,0.0004832181,0.08197068,0.1638284,0.01491866,0.00440858],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966371,0.001102776,0.00004338031,0.001183998,0.0006076401,0.0002658708,0.00003688955,0.000006014767,0.000116312],"genre_scores_gemma":[0.9984854,0.0001184541,0.0004157725,0.0006769937,0.00023612,0.000008371349,0.00004011831,0.000008505142,0.00001026533],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9067497,"threshold_uncertainty_score":0.4916691,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2128313776","doi":"10.1099/ijs.0.02858-0","title":"Mycoplasma ovis comb. nov. (formerly Eperythrozoon ovis), an epierythrocytic agent of haemolytic anaemia in sheep and goats","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Ovis; Mycoplasma; Microbiology; 16S ribosomal RNA; Mycoplasmataceae; Rickettsia; Pathogen; Bacteria; Rickettsiales; Mollicutes; Virology; Zoology; Genetics; Ecology; Virus","retraction":null,"screen_n_in":null,"score":{"opus":0.01289819314022575,"gpt":0.2495012770451388,"spread":0.2366030839049131,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005032771,0.0002542186,0.0008380972,0.0005742599,0.00008203264,0.00001940178,0.0003350892,0.0002667903,0.0001052995],"category_scores_gemma":[0.0002401711,0.0002117665,0.0001430138,0.0001264908,0.0005080865,0.0003278769,0.0001045473,0.0002860605,0.00003421941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004030137,"about_ca_system_score_gemma":0.0002712797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002321418,"about_ca_topic_score_gemma":0.0001186902,"domain_scores_codex":[0.9977022,0.0003115094,0.001347934,0.000270726,0.00008138995,0.0002862002],"domain_scores_gemma":[0.9981977,0.0002728797,0.0008582715,0.0001761568,0.000428,0.00006703461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002559252,0.003625828,0.1923754,0.008974856,0.005456056,0.0008048764,0.006795737,0.002605686,0.7630883,0.01114329,0.001364786,0.001205929],"study_design_scores_gemma":[0.05102092,0.01341816,0.5334995,0.04034754,0.002237386,0.3027951,0.01261091,0.00044309,0.02103935,0.01845233,0.001249789,0.00288592],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869877,0.01066349,0.0003973351,0.0002886466,0.00115291,0.0003420837,0.00009232378,0.00001441922,0.00006105675],"genre_scores_gemma":[0.9988884,0.0005044,0.0002674535,0.0001256865,0.00006200741,0.00001105714,0.00006742048,0.00001624402,0.000057349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.742049,"threshold_uncertainty_score":0.8635589,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105852275","doi":"10.1099/ijs.0.044453-0","title":"Magnetovibrio blakemorei gen. nov., sp. nov., a magnetotactic bacterium ( Alphaproteobacteria : Rhodospirillaceae ) isolated from a salt marsh","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Geomagnetism and Paleomagnetism Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Fondation pour la Recherche Médicale; National Science Foundation","keywords":"Thiosulfate; Biology; Alphaproteobacteria; Rhodospirillaceae; Strain (injury); Bacteria; Rhodospirillales; Phototroph; Magnetotactic bacteria; Electron acceptor; 16S ribosomal RNA; Microbiology; Sulfur; Biochemistry; Chemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.009632703135789848,"gpt":0.2262422296701543,"spread":0.2166095265343645,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004521443,0.0003439932,0.0006271778,0.0001723043,0.0001004789,0.00005093986,0.0004491396,0.0002774796,0.0003242773],"category_scores_gemma":[0.0001758512,0.0002875328,0.0002102627,0.00007611849,0.0002146609,0.0000522066,0.000276952,0.0001853399,0.00006616352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005777536,"about_ca_system_score_gemma":0.0001004409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005497519,"about_ca_topic_score_gemma":0.00002088204,"domain_scores_codex":[0.9977021,0.0003063991,0.001061916,0.0003099432,0.0001848915,0.0004347761],"domain_scores_gemma":[0.9981682,0.0000964453,0.000793788,0.0002659647,0.0004892254,0.0001863572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006867253,0.0001912537,0.02678402,0.0007404443,0.000943511,0.00004981302,0.000467485,0.000008273334,0.9640021,0.00004475845,0.005768483,0.0003131116],"study_design_scores_gemma":[0.01378455,0.007328932,0.8226525,0.00664941,0.001943954,0.05676767,0.002238623,0.0003080158,0.01402456,0.001142037,0.06976341,0.003396373],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9631775,0.03140792,0.001313747,0.0006046477,0.002560892,0.0004090804,0.0002606433,0.00001254639,0.0002530298],"genre_scores_gemma":[0.9933957,0.001128814,0.002818662,0.0002884295,0.001414056,0.00002134877,0.0002834036,0.00002905965,0.0006204579],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9499776,"threshold_uncertainty_score":0.9999577,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052911362","doi":"10.1099/ijs.0.002741-0","title":"Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Gammaproteobacteria; Biology; Phylogenomics; Phylogenetic tree; Genetics; Clade; Bacteria; 16S ribosomal RNA; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01244456255158608,"gpt":0.2179698212500021,"spread":0.205525258698416,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006557668,0.0001357708,0.0001997541,0.00005342465,0.0002727856,0.00003657376,0.0003270104,0.0001100891,0.000003139129],"category_scores_gemma":[0.0002220158,0.00007699859,0.00008040159,0.00003721802,0.0002647488,0.000005472218,0.0001116126,0.0001845118,0.000001157054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002695106,"about_ca_system_score_gemma":0.00005651392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005504475,"about_ca_topic_score_gemma":0.000005665244,"domain_scores_codex":[0.9988267,0.0002920718,0.0005104954,0.0001515479,0.00008724903,0.0001319671],"domain_scores_gemma":[0.9989519,0.0001030161,0.0004721955,0.0001435153,0.0002940684,0.00003537777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001510938,0.00004639005,0.007531829,0.0001633746,0.0004894948,0.000006468306,0.0004106634,0.0002819016,0.9870296,0.002229989,0.001521647,0.0001375148],"study_design_scores_gemma":[0.002401883,0.001547049,0.9453058,0.002450054,0.0003835601,0.008795676,0.005453239,0.0006597881,0.008033964,0.01558654,0.008562122,0.0008203674],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983421,0.01329883,0.0004683785,0.002041817,0.0002688619,0.0003953143,0.00002583863,0.000001608837,0.00007840425],"genre_scores_gemma":[0.9979739,0.0003448653,0.0009174439,0.0002068959,0.0004043923,0.00001452682,0.00001518439,0.000006497602,0.0001163359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9789957,"threshold_uncertainty_score":0.3139911,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104455845","doi":"10.1099/ijs.0.63708-0","title":"Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Thermophile; Thiosulfate; Sulfur; Heterotroph; Yeast extract; 16S ribosomal RNA; Botany; Bacteria; Microbiology","retraction":null,"screen_n_in":null,"score":{"opus":0.02205867908923213,"gpt":0.2417192194307929,"spread":0.2196605403415608,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007161357,0.0005197343,0.000836577,0.0002525695,0.0002823979,0.0000618896,0.0006093405,0.0003200032,0.00002924873],"category_scores_gemma":[0.0001818693,0.0004179633,0.000325577,0.0001179117,0.001181901,0.00004891104,0.000411571,0.0002722311,0.000004082326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001152231,"about_ca_system_score_gemma":0.0002324104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009768412,"about_ca_topic_score_gemma":0.0001832968,"domain_scores_codex":[0.996601,0.0003250448,0.001568135,0.0006521839,0.0004122547,0.0004413282],"domain_scores_gemma":[0.9971105,0.0001563768,0.00115665,0.0003141084,0.001036374,0.0002259228],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003882746,0.0002032427,0.001204515,0.0002457449,0.001122541,0.00001798227,0.001169365,0.0001362499,0.9950489,0.0001054796,0.0002602403,0.00009744264],"study_design_scores_gemma":[0.009515437,0.00163281,0.05335552,0.00206562,0.001309351,0.01793816,0.003638705,0.0007196782,0.9002863,0.002372939,0.005091503,0.002073992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850041,0.01175802,0.0001077968,0.0008095999,0.0005847687,0.0005839105,0.001094538,0.000008075395,0.00004924458],"genre_scores_gemma":[0.9951464,0.001385323,0.002094631,0.0003391502,0.0007058866,0.0000329473,0.0001522592,0.00005228959,0.00009110486],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09476264,"threshold_uncertainty_score":0.9998272,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171290622","doi":"10.1099/ijs.0.020628-0","title":"Halomonas titanicae sp. nov., a halophilic bacterium isolated from the RMS Titanic","year":2010,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":100,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Ontario Science Centre","funders":"","keywords":"Halomonas; Halophile; Biology; 16S ribosomal RNA; Strain (injury); Microbiology; Bacteria; Botany; Genetics; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.007666803553599051,"gpt":0.2181452889097286,"spread":0.2104784853561295,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002865249,0.0001375611,0.0002571249,0.00003971313,0.00007926106,0.00002736256,0.0004542847,0.0001371859,0.00004388608],"category_scores_gemma":[0.0001546459,0.00008855425,0.0001228195,0.00003182184,0.0001633992,0.000003389482,0.0001584269,0.0001682466,0.00001713263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001701533,"about_ca_system_score_gemma":0.00007325276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002618211,"about_ca_topic_score_gemma":0.00005901626,"domain_scores_codex":[0.9989974,0.00009112564,0.0005300985,0.0001662873,0.00008268779,0.0001323859],"domain_scores_gemma":[0.9989089,0.0001032451,0.000369533,0.0001891455,0.0003822367,0.00004687314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008687482,0.00003900379,0.003795067,0.00005507728,0.0005511698,0.000008566459,0.0001015439,0.000005621238,0.9931068,0.0002481052,0.001963107,0.00003903286],"study_design_scores_gemma":[0.01425676,0.00453557,0.590901,0.006123558,0.001958196,0.0627967,0.005071624,0.001048786,0.04790707,0.01853064,0.2433744,0.003495764],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904011,0.005572165,0.0003410674,0.001376143,0.001881413,0.000157049,0.0001196245,0.000001817724,0.0001495621],"genre_scores_gemma":[0.9976903,0.0004060044,0.0006621503,0.0003203173,0.000745424,0.000005849511,0.00004753406,0.00001080169,0.0001116285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9451997,"threshold_uncertainty_score":0.3611137,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054929185","doi":"10.1099/ijs.0.048371-0","title":"Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.","year":2013,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Clade; Phylum; Phylogenetics; Evolutionary biology; Genetics; Genome; 16S ribosomal RNA; Bacterial genome size; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01226040599988162,"gpt":0.238312595904382,"spread":0.2260521899045004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008306358,0.0004101566,0.0006429541,0.00005913396,0.0006693697,0.0001747332,0.0006953326,0.0002191101,0.000004745455],"category_scores_gemma":[0.000299991,0.0001794797,0.0001964838,0.00006519316,0.000754119,0.00001750864,0.0005562706,0.0002365946,5.433042e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004959512,"about_ca_system_score_gemma":0.0001910933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000500042,"about_ca_topic_score_gemma":0.00007501452,"domain_scores_codex":[0.9976516,0.0004390279,0.001003059,0.0003769585,0.0001934099,0.000335937],"domain_scores_gemma":[0.9965807,0.000907992,0.001098056,0.0003128865,0.001035098,0.00006523654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007792137,0.00004805648,0.003239372,0.0004307381,0.001334858,9.597866e-7,0.001499924,0.0000387507,0.9897406,0.002127786,0.0003540741,0.0004057407],"study_design_scores_gemma":[0.02500998,0.01196748,0.7345535,0.007225282,0.004045842,0.0036613,0.0736864,0.008485828,0.05830879,0.01162725,0.05804332,0.003384992],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9702588,0.0212054,0.0008408355,0.003975254,0.001307889,0.002206625,0.000190395,0.000003447294,0.00001132873],"genre_scores_gemma":[0.9961053,0.002429597,0.0001958847,0.0006832003,0.0002814521,0.0001747408,0.00004115443,0.00003096654,0.00005768992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9314317,"threshold_uncertainty_score":0.7318969,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110852763","doi":"10.1099/ijs.0.02842-0","title":"Clover proliferation phytoplasma: ‘Candidatus Phytoplasma trifolii’","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"","keywords":"Biology; Phytoplasma; 16S ribosomal RNA; Broom; Virescence; Phylogenetic tree; Restriction fragment length polymorphism; Leafhopper; Botany; Gene; Genetics; Polymerase chain reaction","retraction":null,"screen_n_in":null,"score":{"opus":0.01226319559571997,"gpt":0.2139134736998784,"spread":0.2016502781041584,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002950552,0.0001544634,0.0003915562,0.00005541233,0.0001021608,0.00004881219,0.0002783063,0.0001238521,0.00008557273],"category_scores_gemma":[0.00009204513,0.00006599702,0.0001492233,0.00009098419,0.00007500809,0.0002420616,0.00005535464,0.0001452651,0.00003983487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001229796,"about_ca_system_score_gemma":0.00004300391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003242712,"about_ca_topic_score_gemma":0.00003914317,"domain_scores_codex":[0.9986928,0.00008725873,0.0006882228,0.0001699468,0.0001743178,0.0001875087],"domain_scores_gemma":[0.9988312,0.0001306632,0.0004881773,0.00004245237,0.0004218082,0.0000857143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001268978,0.001108904,0.09298999,0.001811372,0.001218286,0.0004263138,0.001264474,0.0006082028,0.8832556,0.007581688,0.006001557,0.002464631],"study_design_scores_gemma":[0.02854395,0.01003084,0.4340598,0.0346235,0.001490311,0.2046625,0.006340664,0.0009293904,0.09835302,0.05728241,0.1186465,0.005037098],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995366,0.001214269,0.00006812477,0.001531432,0.001151565,0.000222214,0.0001082798,0.00001377612,0.0003242878],"genre_scores_gemma":[0.9981035,0.0002126002,0.0005008466,0.0002436915,0.0007270325,0.000009003455,0.00005349053,0.000001461994,0.0001483823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7849026,"threshold_uncertainty_score":0.269128,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4220957659","doi":"10.1099/ijsem.0.005243","title":"Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation","year":2022,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":95,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"College of Engineering, Michigan State University; German Network for Bioinformatics Infrastructure; Natural Sciences and Engineering Research Council of Canada; Queen's University; Coordination of European Transnational Research in Organic Food and Farming Systems; Bundesministerium für Bildung und Forschung; Compute Canada; Michigan State University; Wellcome Trust; Horizon 2020 Framework Programme; Deutsche Forschungsgemeinschaft","keywords":"Biology; Taxonomy (biology); Paraphyly; Phylogenetic tree; Genus; Botany; Zoology; Evolutionary biology; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02959651410765357,"gpt":0.2425120566283056,"spread":0.212915542520652,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005142693,0.00008311935,0.000354717,0.00006151232,0.00006446051,0.00000703351,0.0003317344,0.0000597007,0.0001084351],"category_scores_gemma":[0.0002728062,0.00004010799,0.0001644738,0.0001088389,0.00005538053,0.00007639815,0.00008267003,0.00009921805,0.000001122338],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007483075,"about_ca_system_score_gemma":0.00006789641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002835377,"about_ca_topic_score_gemma":0.000002740193,"domain_scores_codex":[0.9986891,0.0001691545,0.0007893154,0.000106438,0.0001504174,0.0000955792],"domain_scores_gemma":[0.9978899,0.0005308253,0.001120523,0.00003481692,0.0003867587,0.00003719614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0009074102,0.0003859873,0.01098016,0.001929074,0.001048569,0.000009578919,0.0007107723,0.00004718323,0.9558069,0.01612798,0.00974595,0.002300472],"study_design_scores_gemma":[0.02174705,0.04628956,0.1515908,0.05698954,0.005149236,0.05952413,0.06009867,0.001863035,0.1463665,0.3650801,0.07996598,0.005335458],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935209,0.002978878,0.0009781281,0.001210121,0.0005634304,0.0005232305,0.0002053188,0.000004795189,0.00001525875],"genre_scores_gemma":[0.9864184,0.00002019314,0.01316742,0.00007156438,0.0001901183,0.00002534889,0.00005108151,0.000001181383,0.00005467767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8094404,"threshold_uncertainty_score":0.1635556,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052639964","doi":"10.1099/ijs.0.65213-0","title":"Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum ‘Synergistetes’ isolated from man","year":2007,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Biology; 16S ribosomal RNA; Phylogenetic tree; Phylum; Fastidious organism; Phylogenetics; Microbiology; Taxonomy (biology); Ribosomal RNA; Genetics; Gene; Bacteria; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.008585562804898514,"gpt":0.2309961838587815,"spread":0.2224106210538829,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004177479,0.0001476476,0.0002962621,0.00005225522,0.0001255867,0.00001312756,0.0005085163,0.0001165164,0.0000233044],"category_scores_gemma":[0.0000752804,0.00008325704,0.0001647579,0.00005232474,0.0003283798,0.000002610116,0.0002190729,0.0001082312,0.000003059836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003564627,"about_ca_system_score_gemma":0.00006444599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001205369,"about_ca_topic_score_gemma":0.0001917532,"domain_scores_codex":[0.9987338,0.00009407588,0.000739416,0.0001547901,0.0001183237,0.0001595702],"domain_scores_gemma":[0.998535,0.0001145381,0.0006783925,0.0002152459,0.0004220817,0.00003470256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003130429,0.00009214261,0.02471838,0.0003326273,0.001624759,0.00001347057,0.0004309186,0.0001983973,0.9677659,0.00018489,0.004265815,0.0000596676],"study_design_scores_gemma":[0.01167409,0.003090585,0.5299684,0.009760537,0.00202786,0.01884549,0.008849363,0.0009496943,0.2529829,0.003568155,0.1559251,0.002357805],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9859024,0.01064214,0.0006105281,0.0009582876,0.001381451,0.0001976937,0.0001225593,0.000001026781,0.0001839071],"genre_scores_gemma":[0.9983172,0.0006266673,0.000237695,0.0002873974,0.0003647815,0.000002660318,0.00001832794,0.00001001312,0.000135217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.714783,"threshold_uncertainty_score":0.3395123,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2096735666","doi":"10.1099/ijs.0.64804-0","title":"Azospirillum canadense sp. nov., a nitrogen-fixing bacterium isolated from corn rhizosphere","year":2007,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Rhizosphere; 16S ribosomal RNA; Diazotroph; Microbial inoculant; Botany; Azospirillum brasilense; Strain (injury); Nitrogen fixation; Microbiology; Ribosomal RNA; Bacteria; Gene; Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.00785414729652467,"gpt":0.2198919696994542,"spread":0.2120378224029295,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003780964,0.000167087,0.0003449646,0.00007744958,0.00007027115,0.00001935388,0.0002825666,0.0001545504,0.00003936671],"category_scores_gemma":[0.00009865776,0.0001395951,0.0001268904,0.00003267156,0.0001130658,0.00000354583,0.0001263019,0.0001042433,0.000008085176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006399147,"about_ca_system_score_gemma":0.00009968474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001328107,"about_ca_topic_score_gemma":0.0001790474,"domain_scores_codex":[0.998674,0.00007723754,0.0007471592,0.0001960363,0.0000966387,0.0002088931],"domain_scores_gemma":[0.9987018,0.00007647197,0.0004883467,0.0001310183,0.0005134703,0.00008892322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000319384,0.0000469029,0.02727779,0.0001612988,0.0009617188,0.0000587417,0.0001801678,0.00002123099,0.969352,0.0000354503,0.001537401,0.00004792128],"study_design_scores_gemma":[0.02421661,0.007810106,0.5006183,0.01555722,0.002590485,0.1051847,0.01903574,0.0009796718,0.2152172,0.009842367,0.09301682,0.00593084],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867104,0.008942626,0.002477787,0.0002377105,0.001264702,0.0001434805,0.0001167795,0.000002169619,0.0001042957],"genre_scores_gemma":[0.9973285,0.0002756241,0.001382499,0.0002630783,0.0005682202,0.00000171848,0.0000603699,0.00001392411,0.0001060377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7541348,"threshold_uncertainty_score":0.5692521,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1985826613","doi":"10.1099/ijs.0.048488-0","title":"Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus","year":2013,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Health Protection Agency","keywords":"Biology; Bacillus subtilis; Bacillus cereus; Clade; Bacillus (shape); Microbiology; Genus; Zoology; Bacteria; Phylogenetics; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01180034148326782,"gpt":0.2408116975699829,"spread":0.2290113560867151,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006708122,0.0001949481,0.0003880157,0.0001217912,0.00009254087,0.00004606961,0.00054487,0.0001586015,0.00003056721],"category_scores_gemma":[0.0004986703,0.0001035142,0.0001337211,0.00010175,0.0004682021,0.00002092472,0.0003194674,0.0001515069,0.000001110923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006842235,"about_ca_system_score_gemma":0.0001844967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000971827,"about_ca_topic_score_gemma":0.00006926631,"domain_scores_codex":[0.9982471,0.000271044,0.0007942687,0.0002348957,0.0002407319,0.0002119463],"domain_scores_gemma":[0.9984328,0.0001834363,0.0004657799,0.0002450124,0.0005939441,0.00007907755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003399381,0.00004975661,0.0008673549,0.0006424842,0.0003507897,0.000002954288,0.001109365,0.0003181251,0.9935901,0.001088843,0.0009314818,0.000708792],"study_design_scores_gemma":[0.01774717,0.009338173,0.1333347,0.009755434,0.001008791,0.00506938,0.02221548,0.003201925,0.7205132,0.01608785,0.05927593,0.002452029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839199,0.008184141,0.002418836,0.003723537,0.0003327075,0.001259446,0.00007028348,0.00000143301,0.00008975426],"genre_scores_gemma":[0.9978376,0.0006032599,0.0008250357,0.0001791046,0.0001353148,0.00004294224,0.00001839691,0.00001233015,0.0003459829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.273077,"threshold_uncertainty_score":0.4221187,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165823571","doi":"10.1099/ijs.0.02793-0","title":"Nitratireductor aquibiodomus gen. nov., sp. nov., a novel α-proteobacterium from the marine denitrification system of the Montreal Biodome (Canada)","year":2004,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Montreal Biodome; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Mesorhizobium; 16S ribosomal RNA; Strain (injury); Nitrite; Alphaproteobacteria; Proteobacteria; Phylogenetic tree; Denitrification; Bacteria; Nutrient agar; Botany; Alteromonas; Microbiology; Agar; Nitrate; Ecology; Nitrogen fixation; Biochemistry; Nitrogen; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.008319473326318478,"gpt":0.1897979486111593,"spread":0.1814784752848408,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002405831,0.000150981,0.0003053742,0.00003611696,0.000098226,0.00001572085,0.0005403729,0.00009450287,0.000004816076],"category_scores_gemma":[0.0001149292,0.00008762071,0.0001329905,0.00005420421,0.0001849372,0.00000331282,0.0001825238,0.00009267029,0.000001036298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001160337,"about_ca_system_score_gemma":0.0003830213,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009541417,"about_ca_topic_score_gemma":0.005814088,"domain_scores_codex":[0.9987136,0.0001046624,0.0007312766,0.0001655745,0.0001570845,0.0001278316],"domain_scores_gemma":[0.9983691,0.0000681966,0.00077402,0.0002289474,0.0005223547,0.00003741095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001349166,0.00005724071,0.005067605,0.0002361025,0.0006355969,0.000003320846,0.000109512,0.0001518127,0.9929194,0.0003043395,0.0003581675,0.0000219259],"study_design_scores_gemma":[0.009117682,0.000863502,0.7652838,0.005104186,0.0009671538,0.01303313,0.007057263,0.0001311737,0.1932389,0.001181657,0.003039081,0.0009825244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928596,0.003304209,0.0006514789,0.001246844,0.001163064,0.0003279623,0.0003866379,0.000001177692,0.00005899697],"genre_scores_gemma":[0.9983737,0.0001401513,0.0008393686,0.0001262343,0.0004283519,0.00001064844,0.00004436873,0.000008893372,0.00002828193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7996806,"threshold_uncertainty_score":0.9970542,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160294631","doi":"10.1099/ijs.0.039701-0","title":"Bdellovibrio exovorus sp. nov., a novel predator of Caulobacter crescentus","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Western University","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada; Queen's University","keywords":"Caulobacter crescentus; Biology; Bdellovibrio; Microbiology; Predator; Flagellum; Bacteria; Ecology; Bacterial protein; Genetics; Predation","retraction":null,"screen_n_in":null,"score":{"opus":0.01726792065699531,"gpt":0.2736737088141631,"spread":0.2564057881571679,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005124335,0.0001467717,0.0003663188,0.0001736629,0.00003198299,0.00001530519,0.0003698248,0.0001624492,0.00005356353],"category_scores_gemma":[0.000244477,0.0001189739,0.0001432629,0.00005271319,0.0001908058,0.00003579502,0.0001686039,0.0001236441,0.00001517834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000679775,"about_ca_system_score_gemma":0.0001260738,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001518144,"about_ca_topic_score_gemma":0.000004687009,"domain_scores_codex":[0.9985499,0.000130405,0.0007505073,0.0001454061,0.0001728732,0.0002509514],"domain_scores_gemma":[0.9984728,0.00006119693,0.0005553962,0.0001665528,0.0006256082,0.0001184106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002859665,0.0002216393,0.04719965,0.0007249833,0.0004702765,0.000005978588,0.0001072341,0.00001501499,0.9490142,0.00008938154,0.001851372,0.00001423603],"study_design_scores_gemma":[0.01490751,0.003781285,0.4896922,0.01290849,0.0009121346,0.0973025,0.002351733,0.0004027172,0.3325927,0.0001595939,0.04281678,0.002172332],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921401,0.004457331,0.001748521,0.0001576687,0.001038846,0.0002058452,0.0001304063,0.000002562689,0.0001187448],"genre_scores_gemma":[0.9973687,0.0001777004,0.001519569,0.00007192669,0.0005022955,0.000004846112,0.00009245296,0.0000126192,0.0002499149],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6164216,"threshold_uncertainty_score":0.4851615,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}