{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":253,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":253,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"da881e0e37e8","filters":{"venue":"Journal of Eukaryotic Microbiology"}},"results":[{"id":"W2171020662","doi":"10.1111/j.1550-7408.2005.00053.x","title":"The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists","year":2005,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1724,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; Bedford Institute of Oceanography; Geological Survey of Canada; Natural Resources Canada; University of British Columbia; University of Guelph; University of Toronto; Dalhousie University","funders":"","keywords":"Biology; Protist; Taxonomy (biology); Multicellular organism; Monophyly; Evolutionary biology; Phylogenetic tree; Phylogenetics; Protozoa; Systematics; Zoology; Botany; Genetics; Clade; Gene","authors":[{"name":"Sina M. Adl","is_ca":true},{"name":"Alastair G. B. Simpson","is_ca":true},{"name":"Mark A. Farmer","is_ca":false},{"name":"Robert A. Andersen","is_ca":false},{"name":"O. Roger Anderson","is_ca":false},{"name":"John R. Barta","is_ca":true},{"name":"Samuel S. Bowser","is_ca":false},{"name":"Guy Brugerolle","is_ca":false},{"name":"Robert A. Fensome","is_ca":true},{"name":"Suzanne Fredericq","is_ca":false},{"name":"Timothy Y. James","is_ca":false},{"name":"Sergey A. Karpov","is_ca":false},{"name":"Paul Kugrens","is_ca":false},{"name":"John C. Krug","is_ca":true},{"name":"Christopher E. Lane","is_ca":true},{"name":"Louise A. Lewis","is_ca":false},{"name":"Jean M. Lodge","is_ca":false},{"name":"Denis H. Lynn","is_ca":true},{"name":"David G. Mann","is_ca":false},{"name":"Richard M. McCourt","is_ca":false},{"name":"Leonel Mendoza","is_ca":false},{"name":"Øjvind Moestrup","is_ca":false},{"name":"Sharon E. Mozley-Standridge","is_ca":false},{"name":"Thomas A. Nerad","is_ca":false},{"name":"Carol A. Shearer","is_ca":false},{"name":"А. В. Смирнов","is_ca":false},{"name":"Frederick W. Spiegel","is_ca":false},{"name":"“Max” F. J. R. Taylor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04061342155159758,"gpt":0.2345930448061039,"spread":0.1939796232545063,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000332885,0.0001156179,0.0001960064,0.00003863519,0.00008166854,0.000007451462,0.0004298466,0.0001134495,0.00004919037],"category_scores_gemma":[0.00006743547,0.00006054241,0.0001146089,0.0000753274,0.0002875246,0.000005169917,0.00005588539,0.0001412602,0.000004894686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001810333,"about_ca_system_score_gemma":0.0001990847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007525589,"about_ca_topic_score_gemma":0.00003032116,"domain_scores_codex":[0.9991639,0.0001396454,0.0003588475,0.0001210293,0.00006637198,0.0001501763],"domain_scores_gemma":[0.9987846,0.00009696199,0.0006121566,0.0002640877,0.0001993505,0.00004285788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000851898,0.0001466851,0.02460106,0.00001612973,0.0003330256,0.000002115662,0.00005903785,0.00007198139,0.9443327,0.001328707,0.02284583,0.005410878],"study_design_scores_gemma":[0.001354507,0.002237692,0.1728844,0.00007306574,0.0001041728,0.0002378818,0.00008381692,0.000004949318,0.6923637,0.0001446277,0.1303402,0.0001709463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903874,0.001086821,0.001716616,0.005430373,0.0001812791,0.0004025198,0.00004536137,0.000001782466,0.0007477809],"genre_scores_gemma":[0.9972028,0.0001216635,0.001389688,0.0002741217,0.0002261555,0.000003399616,0.000009547112,0.000007467914,0.0007651678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.251969,"threshold_uncertainty_score":0.2468848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073302338","doi":"10.1111/j.1550-7408.2012.00644.x","title":"The Revised Classification of Eukaryotes","year":2012,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1652,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Guelph; University of Saskatchewan; Dalhousie University","funders":"U.S. National Library of Medicine; National Institutes of Health; Natural Environment Research Council; Sight Research UK","keywords":"Biology; Phylogenetic tree; Tree of life (biology); Phylogenetic nomenclature; Evolutionary biology; Tree (set theory); Phylogenetics; Biological classification; Phylogenetic diversity; Computational biology; Clade; Genetics; Gene; Combinatorics","authors":[{"name":"Sina M. Adl","is_ca":true},{"name":"Alastair G. B. Simpson","is_ca":true},{"name":"Christopher E. Lane","is_ca":false},{"name":"Julius Lukeš","is_ca":false},{"name":"David Bass","is_ca":false},{"name":"Samuel S. Bowser","is_ca":false},{"name":"Matthew W. Brown","is_ca":true},{"name":"Fabien Burki","is_ca":true},{"name":"Micah Dunthorn","is_ca":false},{"name":"Vladimı́r Hampl","is_ca":false},{"name":"Aaron A. Heiss","is_ca":true},{"name":"Mona Hoppenrath","is_ca":false},{"name":"Enrique Lara","is_ca":false},{"name":"Line Le Gall","is_ca":false},{"name":"Denis H. Lynn","is_ca":true},{"name":"Hilary A. McManus","is_ca":false},{"name":"Edward A. D. Mitchell","is_ca":false},{"name":"Sharon E. Mozley‐Stanridge","is_ca":false},{"name":"Laura Wegener Parfrey","is_ca":false},{"name":"Jan Pawłowski","is_ca":false},{"name":"Sonja Rueckert","is_ca":false},{"name":"Lora L. Shadwick","is_ca":false},{"name":"Conrad L. Schoch","is_ca":false},{"name":"А. В. Смирнов","is_ca":false},{"name":"Frederick W. Spiegel","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01566749955509157,"gpt":0.2418943402872078,"spread":0.2262268407321162,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006361313,0.00007959239,0.0001556288,0.0000337057,0.00007851993,0.000005329785,0.0002902883,0.0001157978,0.00001797754],"category_scores_gemma":[0.0001922422,0.0000533446,0.0001317035,0.00005540246,0.0001801137,0.000005614561,0.00006833996,0.000107709,0.000008686114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001140842,"about_ca_system_score_gemma":0.00006351896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001412719,"about_ca_topic_score_gemma":0.000001628958,"domain_scores_codex":[0.9992103,0.0001598825,0.0003308943,0.00006935997,0.00004100426,0.0001885719],"domain_scores_gemma":[0.9990947,0.00006135266,0.0004332561,0.0001835563,0.0001700181,0.0000571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001423702,0.00005783106,0.1127159,0.00001193064,0.00009197716,6.530535e-7,0.0000436414,0.000002754313,0.8793372,0.0005891562,0.006145373,0.0008611793],"study_design_scores_gemma":[0.001061535,0.0009512255,0.5375549,0.0000422076,0.0001316025,0.0007517989,0.0002312139,0.000003455101,0.3611621,0.0002309377,0.09766345,0.0002156003],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916038,0.006297627,0.0005589582,0.0003168813,0.0005593821,0.00008778072,0.00001397525,0.000001356928,0.0005602269],"genre_scores_gemma":[0.9982437,0.0005600869,0.0005564791,0.000114895,0.0003321534,5.768791e-7,0.00001510761,0.000005490915,0.000171476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5181751,"threshold_uncertainty_score":0.217533,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2892586303","doi":"10.1111/jeu.12691","title":"Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes","year":2018,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1399,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Dalhousie University; University of Guelph; University of Saskatchewan","funders":"U.S. National Library of Medicine; Natural Environment Research Council; Universitat Pompeu Fabra; Natural Sciences and Engineering Research Council of Canada; Sight Research UK; National Institutes of Health; Harvard University; Institució Catalana de Recerca i Estudis Avançats; Dalhousie University; Russian Foundation for Basic Research; Centre National de la Recherche Scientifique; European Regional Development Fund; Ministerstvo Školství, Mládeže a Tělovýchovy; University of Technology Sydney; National Institute of Allergy and Infectious Diseases; Institut Français de Recherche pour l'Exploitation de la Mer; Agence Nationale de la Recherche; Generalitat de Catalunya; Radcliffe Institute for Advanced Study, Harvard University; National Science Foundation; Science for Life Laboratory; Boise State University; Biotechnology and Biological Sciences Research Council; CS Fund; Gordon and Betty Moore Foundation; Russian Science Foundation; Russell Sage Foundation","keywords":"Biology; Clade; Environmental DNA; Monophyly; Evolutionary biology; Phylogenetic tree; Nomenclature; DNA barcoding; Taxonomic rank; Ecology; Phylogenetic nomenclature; Zoology; Biodiversity; Taxonomy (biology); Genetics; Gene","authors":[{"name":"Sina M. Adl","is_ca":true},{"name":"David Bass","is_ca":false},{"name":"Christopher E. Lane","is_ca":false},{"name":"Conrad L. Schoch","is_ca":false},{"name":"А. В. Смирнов","is_ca":false},{"name":"Sabine Agatha","is_ca":false},{"name":"Cédric Berney","is_ca":false},{"name":"Matthew W. Brown","is_ca":false},{"name":"Fabien Burki","is_ca":false},{"name":"Paco Cárdenas","is_ca":false},{"name":"Ivan Čepička","is_ca":false},{"name":"Ludmila Chistyakova","is_ca":false},{"name":"Javier del Campo","is_ca":false},{"name":"Micah Dunthorn","is_ca":false},{"name":"Bente Edvardsen","is_ca":false},{"name":"Yana Eglit","is_ca":true},{"name":"Laure Guillou","is_ca":false},{"name":"Vladimı́r Hampl","is_ca":false},{"name":"Aaron A. Heiss","is_ca":false},{"name":"Mona Hoppenrath","is_ca":false},{"name":"Timothy Y. James","is_ca":false},{"name":"Anna Karnkowska","is_ca":false},{"name":"Sergey A. Karpov","is_ca":false},{"name":"Eunsoo Kim","is_ca":false},{"name":"Martin Kolísko","is_ca":false},{"name":"Alexander Kudryavtsev","is_ca":false},{"name":"Daniel J. G. Lahr","is_ca":false},{"name":"Enrique Lara","is_ca":false},{"name":"Line Le Gall","is_ca":false},{"name":"Denis H. Lynn","is_ca":true},{"name":"David G. Mann","is_ca":false},{"name":"Ramón Massana","is_ca":false},{"name":"Edward A. D. Mitchell","is_ca":false},{"name":"Christine Morrow","is_ca":false},{"name":"Jong Soo Park","is_ca":false},{"name":"Jan Pawłowski","is_ca":false},{"name":"Martha J. Powell","is_ca":false},{"name":"Daniel J. Richter","is_ca":false},{"name":"Sonja Rueckert","is_ca":false},{"name":"Lora L. Shadwick","is_ca":false},{"name":"Satoshi Shimano","is_ca":false},{"name":"Frederick W. Spiegel","is_ca":false},{"name":"Guifré Torruella","is_ca":false},{"name":"Noha H. Youssef","is_ca":false},{"name":"Vasily V. Zlatogursky","is_ca":false},{"name":"Qianqian Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01757121692990607,"gpt":0.2444352790203878,"spread":0.2268640620904817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003473426,0.00007643529,0.0001534162,0.00005458975,0.0001752413,0.000005646247,0.0003340921,0.0001011249,0.00003691473],"category_scores_gemma":[0.0001563935,0.00005252061,0.00006771806,0.00008986431,0.0002674382,0.000003861,0.0004215627,0.00009652543,0.000008612759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007970441,"about_ca_system_score_gemma":0.00004911526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005834102,"about_ca_topic_score_gemma":0.00001288739,"domain_scores_codex":[0.9994135,0.00009322017,0.000213823,0.0001226326,0.00003996912,0.0001167758],"domain_scores_gemma":[0.9992205,0.00003146219,0.0002122644,0.000184586,0.0002878129,0.00006335861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002237839,0.0000522224,0.1183706,0.00001449821,0.0001306038,0.000002637383,0.0003644784,0.000002944817,0.8506474,0.0005418143,0.02873836,0.0009105357],"study_design_scores_gemma":[0.0007998482,0.002667591,0.8636038,0.00005793244,0.0001337793,0.0005524295,0.000237427,0.000004049041,0.0695091,0.0005423464,0.06167951,0.0002121801],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958115,0.0009139101,0.001281258,0.001203887,0.0002665008,0.0001078287,0.00004169522,0.000001182365,0.0003722948],"genre_scores_gemma":[0.9971923,0.0001990732,0.001532227,0.000683411,0.0002622246,2.632264e-7,0.000008217628,0.000003416629,0.0001188935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7811384,"threshold_uncertainty_score":0.2141728,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055251305","doi":"10.1111/j.1550-7408.2001.tb00173.x","title":"Recent Advances in Our Knowledge of the Myxozoa","year":2001,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Myxozoan Parasites in Aquatic Species","field":"Biochemistry, Genetics and Molecular Biology","cited_by":626,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Fisheries and Oceans Canada; University of Toronto","funders":"","keywords":"Myxozoa; Biology; Myxobolus; Myxosporea; Zoology; Taxonomy (biology); Clade; Taxon; Phylogenetic tree; Annelid; Phylogenetics; Evolutionary biology; Ecology; Fishery; Fish ; Gene; Genetics","authors":[{"name":"Michael L. Kent","is_ca":false},{"name":"Karl B. Andrée","is_ca":false},{"name":"Jerri L. Bartholomew","is_ca":false},{"name":"Mansour El‐Matbouli","is_ca":false},{"name":"Sherwin S. Desser","is_ca":true},{"name":"Robert H. Devlin","is_ca":true},{"name":"Stephen W. Feist","is_ca":false},{"name":"Ronald P. Hedrick","is_ca":false},{"name":"Rudolf Hoffmann","is_ca":false},{"name":"Jaswinder Khattra","is_ca":false},{"name":"Sascha L. Hallett","is_ca":false},{"name":"R. J. G. Lester","is_ca":false},{"name":"Matt Longshaw","is_ca":false},{"name":"OSWALDO PALENZEULA","is_ca":false},{"name":"Mark E. Siddall","is_ca":false},{"name":"Chongxie Xiao","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02591922949258671,"gpt":0.3425832333077307,"spread":0.316664003815144,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000667031,0.0003646376,0.001585781,0.0002239561,0.00002851005,0.000007167211,0.00109469,0.0005056376,0.00007533013],"category_scores_gemma":[0.0006203147,0.0002230493,0.0006785234,0.000410628,0.0001743318,0.000004912363,0.0002893385,0.0005195402,0.00001893225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001030674,"about_ca_system_score_gemma":0.000657923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":9.408463e-7,"about_ca_topic_score_gemma":0.00004482472,"domain_scores_codex":[0.997129,0.000648751,0.001548543,0.0002839659,0.00006705832,0.0003227236],"domain_scores_gemma":[0.9972367,0.0001039635,0.001836945,0.0005470993,0.0002186584,0.0000566506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007363965,0.0003766475,0.0009722675,0.003061406,0.000432802,0.00002797973,0.00006776641,0.00002783914,0.003875914,0.00006844745,0.01522883,0.9757864],"study_design_scores_gemma":[0.0003503915,0.0002595825,0.00003656686,0.003179559,0.0002268199,0.001968461,0.00004598805,2.679052e-7,0.0003523706,0.00003511249,0.9933423,0.0002026032],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004532436,0.9960791,0.00003711838,0.0000586588,0.001611775,0.0002992825,0.00003187075,0.000001357782,0.001427633],"genre_scores_gemma":[0.0002090504,0.9979306,0.0002800759,0.00004836191,0.0005497108,0.000004701768,0.00002973243,0.00003436141,0.0009133595],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9781135,"threshold_uncertainty_score":0.9095687,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1986572610","doi":"10.1111/j.1550-7408.2002.tb00224.x","title":"Cryptosporidium hominis n. sp. (Apicomplexa: Cryptosporidiidae) from Homo sapiens","year":2002,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":398,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Infectivity; Cryptosporidium; Cryptosporidium parvum; Feces; Parasite hosting; Apicomplexa; Microbiology; Locus (genetics); Protozoa; Virology; Genetics; Protozoal disease; Gene; Immunology","authors":[{"name":"Una Ryan","is_ca":false},{"name":"Abbie Fall","is_ca":false},{"name":"Lucy Ward","is_ca":false},{"name":"Nawal Hijjawi","is_ca":false},{"name":"Irshad M. Sulaiman","is_ca":false},{"name":"Ronald D. Payer","is_ca":false},{"name":"Richard C. Thompson","is_ca":false},{"name":"Merle S. Olson","is_ca":true},{"name":"Altaf A. Lal","is_ca":false},{"name":"Lihua Xiao","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01527552937011365,"gpt":0.2148792891273229,"spread":0.1996037597572093,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004126789,0.0004198307,0.0009881516,0.0002834346,0.0002660704,0.00003166273,0.0005651365,0.0005720818,0.008541509],"category_scores_gemma":[0.0003692298,0.0003539085,0.0004195806,0.000261649,0.0005226355,0.0001792347,0.0001236318,0.0009035703,0.002629393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001200668,"about_ca_system_score_gemma":0.0001022341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006296132,"about_ca_topic_score_gemma":0.0000126909,"domain_scores_codex":[0.9971735,0.0003278291,0.00129808,0.0003912768,0.00005255363,0.0007567461],"domain_scores_gemma":[0.9972318,0.0009208403,0.000893535,0.0004744694,0.0003707504,0.000108577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001981919,0.0008886856,0.02783304,0.00001489015,0.0007195378,0.0003082834,0.0004546684,0.00004051936,0.7300251,0.001618764,0.2361683,0.001729964],"study_design_scores_gemma":[0.01170416,0.002781123,0.04562688,0.0002607509,0.0009778511,0.01537976,0.0006069887,0.00001936213,0.2329943,0.003040321,0.6851429,0.001465621],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9722886,0.01213768,0.001713603,0.0009191279,0.008058702,0.00021264,0.0002694768,0.00006319775,0.004336985],"genre_scores_gemma":[0.9943001,0.0009151369,0.001671549,0.001365633,0.0006600741,0.000003838453,0.0001138623,0.00004096872,0.0009288649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4970308,"threshold_uncertainty_score":0.9998913,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039750398","doi":"10.1111/j.1550-7408.2008.00371.x","title":"Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis1","year":2009,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":180,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Michael Smith Health Research BC; Tula Foundation; Canadian Institute for Advanced Research","keywords":"Plastid; Endosymbiosis; Biology; Evolutionary biology; Red algae; Algae; Phylogenetics; Organelle; Botany; Chloroplast; Genetics; Gene","authors":[{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006774776807422921,"gpt":0.2240917634293738,"spread":0.2173169866219508,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005581515,0.0003164166,0.001306758,0.000120031,0.00008452986,0.00001337053,0.0005189179,0.000576659,0.00004255905],"category_scores_gemma":[0.0001287456,0.0002050787,0.0005808328,0.00009816866,0.0005291586,0.000005923008,0.000186594,0.0004809124,0.000004601736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005372563,"about_ca_system_score_gemma":0.0004146438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000101192,"about_ca_topic_score_gemma":0.000001846555,"domain_scores_codex":[0.9981652,0.0004887214,0.0007853903,0.000258569,0.00005756414,0.0002445323],"domain_scores_gemma":[0.9983841,0.0001450513,0.001023497,0.0002467698,0.0001276293,0.00007293838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004014566,0.00134381,0.003462966,0.02285576,0.01533446,0.0001883363,0.0006518684,0.00007082596,0.1240734,0.002027948,0.1940788,0.6318973],"study_design_scores_gemma":[0.003682493,0.002221871,0.0001803139,0.002523896,0.00226828,0.006634067,0.00008833736,0.000004296733,0.001379802,0.0002651136,0.9801878,0.0005637553],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006762672,0.9921909,0.0001012996,0.00004818615,0.000158112,0.0002826482,0.0002922462,0.000001988731,0.0001619224],"genre_scores_gemma":[0.01291914,0.9862205,0.0001573946,0.00008288524,0.0002589426,0.00000201444,0.0001714997,0.00001671509,0.0001708905],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.786109,"threshold_uncertainty_score":0.8362868,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020252871","doi":"10.1111/j.1550-7408.2006.00114.x","title":"Phylogeography of the Cosmopolitan Marine Parasite Kudoa thyrsites (Myxozoa: Myxosporea)","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Myxozoan Parasites in Aquatic Species","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Myxozoa; Biology; Myxosporea; Internal transcribed spacer; Phylogeography; Species complex; Zoology; Ribosomal DNA; Parasite hosting; Range (aeronautics); Ecology; Evolutionary biology; Ribosomal RNA; Phylogenetics; Fishery; Gene; Genetics; Fish ; Phylogenetic tree","authors":[{"name":"Christopher M. Whipps","is_ca":false},{"name":"Michael L. Kent","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003223694241086027,"gpt":0.2025116643174693,"spread":0.1992879700763832,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004597215,0.0002634146,0.0004968623,0.0001453873,0.0000818108,0.00001314462,0.0007737908,0.0002354909,0.0001401397],"category_scores_gemma":[0.0001515515,0.0001820366,0.0005094272,0.0002814943,0.0006414891,0.000006592106,0.0002835814,0.0002513303,0.000009225477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003374811,"about_ca_system_score_gemma":0.0001241743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000453327,"about_ca_topic_score_gemma":0.00005848959,"domain_scores_codex":[0.9980968,0.00021529,0.0009082294,0.0002539562,0.0001383356,0.0003873899],"domain_scores_gemma":[0.9979637,0.00009049469,0.0009950122,0.0005813922,0.0003015775,0.000067862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001058486,0.0001381018,0.3761826,0.0000176673,0.0001426526,0.000009479435,0.00001231276,0.00007125951,0.5940209,0.0005804229,0.02861579,0.0001029586],"study_design_scores_gemma":[0.001881159,0.0009855676,0.4549318,0.00006905221,0.0002344461,0.002085528,0.00006903391,0.000006853853,0.5102649,0.004002091,0.02507237,0.0003972479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903613,0.001981635,0.0003288275,0.0003028443,0.0007459379,0.0001770392,0.00006942992,0.000004810289,0.006028115],"genre_scores_gemma":[0.9954877,0.0001724726,0.002031227,0.000462012,0.0005630827,0.000001794462,0.00006634837,0.00002680212,0.00118854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08375602,"threshold_uncertainty_score":0.7423235,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2177087620","doi":"10.1111/j.1550-7408.2002.tb00336.x","title":"Re‐examining Alveolate Evolution Using Multiple Protein Molecular Phylogenies","year":2002,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Dinoflagellate; Apicomplexa; Phylogenetic tree; Phylogenetics; Protozoa; Protist; Gene; Molecular phylogenetics; Evolutionary biology; Ribosomal RNA; Genetics; Ecology; Protozoal disease","authors":[{"name":"Naomi M. Fast","is_ca":true},{"name":"Lingru Xue","is_ca":false},{"name":"Scott E. Bingham","is_ca":false},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02530381943635652,"gpt":0.2200817545941126,"spread":0.1947779351577561,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002729125,0.0001735097,0.0002603617,0.0001137969,0.000107509,0.00001480156,0.000295386,0.0002396395,0.00009196555],"category_scores_gemma":[0.0001751223,0.0001658216,0.0001680615,0.00009988562,0.0001418185,0.000009627986,0.0001325185,0.0002031648,0.00001622612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004974611,"about_ca_system_score_gemma":0.00004863065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001001971,"about_ca_topic_score_gemma":0.000008616477,"domain_scores_codex":[0.9988426,0.0001919802,0.0003808306,0.0002206647,0.00006398038,0.000299964],"domain_scores_gemma":[0.9991324,0.00001759507,0.0003802083,0.0002097323,0.0001765687,0.00008348743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009435102,0.00007136923,0.02363887,0.00001755128,0.0001528051,0.00005878606,0.0000646738,0.0004503911,0.9746996,0.00002322383,0.0005293179,0.0001990215],"study_design_scores_gemma":[0.003165803,0.002565467,0.009269565,0.0001503387,0.0002104931,0.002164057,0.0003461371,0.001072137,0.9764064,0.0003615367,0.003579364,0.0007087012],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986975,0.00296979,0.009347888,0.00007959118,0.0002626508,0.0001625426,0.00002133555,0.000004918116,0.0001762709],"genre_scores_gemma":[0.9945577,0.00004229529,0.004828498,0.0001750695,0.0002127458,0.000001138141,0.00001353239,0.00001609104,0.0001528928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0143693,"threshold_uncertainty_score":0.676201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092862448","doi":"10.1111/j.1550-7408.2005.00072.x","title":"Pneumocystis and Trypanosoma cruzi: Nomenclature and Typifications","year":2006,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":138,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Nomenclature; Pneumocystis jirovecii; Trypanosoma cruzi; Pneumocystis carinii; Zoology; Virology; Parasite hosting; Taxonomy (biology); Human immunodeficiency virus (HIV)","authors":[{"name":"Scott A. Redhead","is_ca":true},{"name":"Melanie T. Cushion","is_ca":false},{"name":"Jacob K. Frenkel","is_ca":false},{"name":"James R. Stringer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02217549244494771,"gpt":0.3001836787512723,"spread":0.2780081863063246,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007895281,0.0004847628,0.002326431,0.0004845219,0.0001048395,0.00003534509,0.000128003,0.0005807157,0.00003316897],"category_scores_gemma":[0.00008071032,0.0003352014,0.0004067815,0.0002377683,0.0002371178,0.00005753342,0.00007902826,0.0008806503,0.00002543941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001561111,"about_ca_system_score_gemma":0.0003454187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000496103,"about_ca_topic_score_gemma":0.000004757273,"domain_scores_codex":[0.9978845,0.0001738101,0.001160655,0.0003840576,0.00008877378,0.0003082181],"domain_scores_gemma":[0.9979703,0.0002709671,0.001058783,0.0002950535,0.000155691,0.0002491802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002401073,0.00117795,0.0005182929,0.02090542,0.003539375,0.003196716,0.0001273332,8.90954e-7,0.03001874,0.0006532607,0.01698866,0.9226332],"study_design_scores_gemma":[0.0009744574,0.0006647765,0.00128108,0.003443568,0.002934488,0.09789494,0.000006341607,5.528887e-7,0.00001678462,0.00005678176,0.892488,0.0002382387],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001017101,0.9969423,0.00004262174,0.0003641825,0.000546627,0.0004983745,0.0001101315,0.00002116453,0.0004574351],"genre_scores_gemma":[0.001158112,0.9962735,0.0008252112,0.0002082021,0.0003522437,0.00001085139,0.00008203401,0.00005240068,0.001037416],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.922395,"threshold_uncertainty_score":0.99991,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2571213226","doi":"10.1111/jeu.12391","title":"Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)","year":2017,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"International Research Center for Neurointelligence, University of Tokyo; National Natural Science Foundation of China","keywords":"Biodiversity; Biology; Documentation; Taxonomy (biology); Metadata; Data science; Resource (disambiguation); Ecology; Environmental resource management; Computer science; World Wide Web","authors":[{"name":"Alan Warren","is_ca":false},{"name":"David J. Patterson","is_ca":false},{"name":"Micah Dunthorn","is_ca":false},{"name":"John C. Clamp","is_ca":false},{"name":"Undine E.M. Achilles‐Day","is_ca":false},{"name":"Erna Aescht","is_ca":false},{"name":"Saleh Alfarraj","is_ca":false},{"name":"Saleh Al‐Quraishy","is_ca":false},{"name":"Khaled A. S. Al‐Rasheid","is_ca":false},{"name":"Martin Carr","is_ca":false},{"name":"John Day","is_ca":false},{"name":"Marc Dellinger","is_ca":false},{"name":"Hamed A. El‐Serehy","is_ca":false},{"name":"Yangbo Fan","is_ca":false},{"name":"Feng Gao","is_ca":false},{"name":"Shan Gao","is_ca":false},{"name":"Jun Gong","is_ca":false},{"name":"Renu Gupta","is_ca":false},{"name":"Xiaozhong Hu","is_ca":false},{"name":"Komal Kamra","is_ca":false},{"name":"Gaytha A. Langlois","is_ca":false},{"name":"Xiaofeng Lin","is_ca":false},{"name":"Diana Lipscomb","is_ca":false},{"name":"Christopher S. Lobban","is_ca":false},{"name":"Pierangelo Luporini","is_ca":false},{"name":"Denis H. Lynn","is_ca":true},{"name":"Honggang Ma","is_ca":false},{"name":"Miroslav Macek","is_ca":false},{"name":"Jacqueline Mackenzie‐Dodds","is_ca":false},{"name":"Seema Makhija","is_ca":false},{"name":"Robert I. Mansergh","is_ca":false},{"name":"Mercedes Martín‐Cereceda","is_ca":false},{"name":"Nettie Mcmiller","is_ca":false},{"name":"D. J. S. Montagnes","is_ca":false},{"name":"Svetlana V. Nikolaeva","is_ca":false},{"name":"Geoffrey Odhiambo Ong’ondo","is_ca":false},{"name":"Blanca Pérez‐Uz","is_ca":false},{"name":"Jasmine Purushothaman","is_ca":false},{"name":"Pablo Quintela‐Alonso","is_ca":false},{"name":"Johana Rotterová","is_ca":false},{"name":"Luciana F. Santoferrara","is_ca":false},{"name":"Chen Shao","is_ca":false},{"name":"Zhuo Shen","is_ca":false},{"name":"Xinlu Shi","is_ca":false},{"name":"Weibo Song","is_ca":false},{"name":"Thorsten Stoeck","is_ca":false},{"name":"Antonietta La Terza","is_ca":false},{"name":"Adriana Vallesi","is_ca":false},{"name":"Mei Wang","is_ca":false},{"name":"Thomas Weisse","is_ca":false},{"name":"Krzysztof Wiąckowski","is_ca":false},{"name":"Lei Wu","is_ca":false},{"name":"Kuidong Xu","is_ca":false},{"name":"Zhenzhen Yi","is_ca":false},{"name":"Rebecca A. Zufall","is_ca":false},{"name":"Sabine Agatha","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03972284444839105,"gpt":0.3197262957433225,"spread":0.2800034512949314,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009890555,0.0002116228,0.0006758528,0.0001425395,0.0001518244,0.00003504485,0.0007616511,0.0003011048,0.00001455448],"category_scores_gemma":[0.0002022789,0.0001271018,0.0002456949,0.0001050698,0.0002389898,0.0000113362,0.0003591404,0.0003048302,0.000009974935],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005380307,"about_ca_system_score_gemma":0.0002459557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007637653,"about_ca_topic_score_gemma":0.0002533748,"domain_scores_codex":[0.998482,0.000430428,0.0006021804,0.0002311657,0.00006731234,0.0001869208],"domain_scores_gemma":[0.9983416,0.00004589582,0.001014697,0.0003717566,0.0001737332,0.00005235597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002585249,0.001344073,0.06985401,0.01414171,0.005678853,0.0003988869,0.002740393,0.0001046649,0.09580137,0.0003044148,0.2782824,0.528764],"study_design_scores_gemma":[0.001018724,0.000991358,0.006100354,0.001228549,0.0006900013,0.001118326,0.00009433842,6.924182e-7,0.0006544613,0.00008699565,0.9877129,0.0003033107],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04398366,0.9534672,0.0000949364,0.0003237418,0.0005430688,0.001095249,0.0004063825,0.000001414656,0.0000843564],"genre_scores_gemma":[0.006301586,0.992626,0.000289509,0.0001973432,0.0001448106,0.000007383564,0.0001779852,0.000009185678,0.0002461802],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7094305,"threshold_uncertainty_score":0.5183062,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2053564683","doi":"10.1111/j.1550-7408.2011.00607.x","title":"Phylogenetic Position of the Adeleorinid Coccidia (Myzozoa, Apicomplexa, Coccidia, Eucoccidiorida, Adeleorina) Inferred Using 18S rDNA Sequences","year":2012,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Coccidia and coccidiosis research","field":"Agricultural and Biological Sciences","cited_by":125,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Acadia University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Monophyly; Paraphyly; Coccidia; Systematics; Clade; Phylogenetic tree; Zoology; Taxon; Phylogenetics; Evolutionary biology; Ribosomal DNA; 18S ribosomal RNA; Taxonomy (biology); Parasite hosting; Ecology; Genetics; Gene","authors":[{"name":"John R. Barta","is_ca":true},{"name":"Joseph D. Ogedengbe","is_ca":true},{"name":"Donald S. Martin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03338364100813562,"gpt":0.2554798974284748,"spread":0.2220962564203392,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001229478,0.0003997818,0.0008357721,0.0001174136,0.0003508509,0.00005856816,0.001216209,0.0003532771,0.0003235023],"category_scores_gemma":[0.0004623602,0.0001687547,0.0005872126,0.0008788558,0.0004508283,0.0003182308,0.0003487602,0.0006651873,0.00003709984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001695642,"about_ca_system_score_gemma":0.0001754033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001779045,"about_ca_topic_score_gemma":0.0001269755,"domain_scores_codex":[0.9961357,0.0009067772,0.001174168,0.0003416696,0.0003885126,0.001053176],"domain_scores_gemma":[0.9966939,0.0009948262,0.001158786,0.0002370761,0.0005786961,0.0003366974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004228867,0.000212464,0.1996444,0.00002371189,0.0001087025,0.000009525276,0.0001917129,0.00006582034,0.7962617,0.0001106268,0.0009043276,0.002424798],"study_design_scores_gemma":[0.0007540509,0.001178751,0.7530867,0.0001920629,0.0002100224,0.002002111,0.0008860467,0.00006114759,0.2320743,0.0004142644,0.008877647,0.0002628704],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922328,0.005243525,0.00003492842,0.0004805934,0.001274469,0.0003528104,0.00007971218,0.00001732916,0.0002838173],"genre_scores_gemma":[0.9978144,0.000373143,0.0002778858,0.0002401519,0.001128175,0.000006146295,0.00002462368,0.000006489156,0.0001289942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5641873,"threshold_uncertainty_score":0.6881618,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150873602","doi":"10.1111/j.1550-7408.2004.tb00574.x","title":"Preferential PCR Amplification of Parasitic Protistan Small Subunit rDNA from Metazoan Tissues","year":2004,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Myxozoan Parasites in Aquatic Species","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Fisheries and Oceans Canada","funders":"","keywords":"Biology; Primer (cosmetics); Parasite hosting; Ribosomal DNA; Polymerase chain reaction; Ribosomal RNA; Protozoa; Gene; Phylogenetics; Microbiology; Genetics","authors":[{"name":"Susan M. Bower","is_ca":true},{"name":"Ryan B. Carnegie","is_ca":true},{"name":"Benjamin Goh","is_ca":true},{"name":"Simon R. M. Jones","is_ca":true},{"name":"Geoffrey J Lowe","is_ca":true},{"name":"MICHELLE W. S. MAK","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02159515786990482,"gpt":0.2625719570368192,"spread":0.2409767991669144,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003070922,0.0002130208,0.0004709567,0.000124746,0.00004371108,0.00001783847,0.0004784895,0.000226562,0.0002278976],"category_scores_gemma":[0.0002722234,0.0001844573,0.0001912953,0.00009985919,0.0002620493,0.000007787798,0.00006319802,0.0001855554,0.00002636536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005029546,"about_ca_system_score_gemma":0.0001977869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004376467,"about_ca_topic_score_gemma":0.00007119559,"domain_scores_codex":[0.9983602,0.0001837147,0.0008441495,0.0002629448,0.00009094479,0.0002580334],"domain_scores_gemma":[0.9983506,0.00006144876,0.0007951627,0.00040721,0.0002953985,0.00009016324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002138879,0.000193827,0.006163761,0.0000269878,0.0003027757,0.000008148701,0.0001214718,0.0001435943,0.9914728,0.0004096567,0.0006148486,0.0003282292],"study_design_scores_gemma":[0.001494049,0.001075102,0.01456207,0.00008726977,0.0002013244,0.0003619021,0.0001070083,0.000002311476,0.9762694,0.002085583,0.003532101,0.0002218854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9767186,0.002032389,0.01996442,0.0001724994,0.0004363629,0.0002401158,0.00007828631,0.000005515365,0.0003517931],"genre_scores_gemma":[0.9813446,0.0002066888,0.0174758,0.0001005622,0.0003820634,0.000004195185,0.0002076038,0.00002403632,0.0002544487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01520342,"threshold_uncertainty_score":0.752195,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2179151654","doi":"10.1111/j.1550-7408.2002.tb00235.x","title":"The Phylogeny of Colpodellids (Alveolata) Using Small Subunit rRNA Gene Sequences Suggests They are the Free‐living Sister Group to Apicomplexans","year":2002,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Phylogenetic tree; Sister group; Rhoptry; Phylogenetics; Evolutionary biology; Most recent common ancestor; Protist; Clade; Genetics; Gene; Apicomplexa","authors":[{"name":"Olga N. Kuvardina","is_ca":true},{"name":"Brian S. Leander","is_ca":true},{"name":"В. В. Алешин","is_ca":false},{"name":"Alexander P. Mylnikov","is_ca":false},{"name":"Patrick J. Keeling","is_ca":true},{"name":"Timur G. Simdyanov","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03445902355086742,"gpt":0.2274875241720449,"spread":0.1930285006211775,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007207872,0.0002094587,0.0003300159,0.00006898979,0.0003257436,0.00003632932,0.001229308,0.0001863535,0.00004118127],"category_scores_gemma":[0.0002047068,0.0001303636,0.0002553841,0.0001195129,0.0003284728,0.000007766741,0.0004086965,0.0002600706,0.000007377499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003501388,"about_ca_system_score_gemma":0.00004743148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005805611,"about_ca_topic_score_gemma":0.0003678876,"domain_scores_codex":[0.9983757,0.0004044046,0.0005232283,0.0002271686,0.00009345343,0.0003760614],"domain_scores_gemma":[0.9983431,0.0001956561,0.000599841,0.000507816,0.000257221,0.00009633813],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009490009,0.0000844989,0.03452191,0.00001926187,0.0002412696,0.00001847228,0.0002795155,0.000659436,0.9623278,0.00007445076,0.001475272,0.0002032143],"study_design_scores_gemma":[0.005534263,0.009022268,0.4027981,0.001023806,0.001555262,0.01231596,0.004385734,0.001177179,0.5029759,0.002866904,0.05353161,0.002813061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939554,0.003263087,0.00136332,0.0006091481,0.0003797714,0.0002133736,0.0001135291,0.000002863049,0.00009952969],"genre_scores_gemma":[0.9965792,0.0004265178,0.001693735,0.0007760391,0.000330036,0.00000163589,0.00001019108,0.00001583588,0.0001668263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4593519,"threshold_uncertainty_score":0.5316074,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016697010","doi":"10.1111/j.1550-7408.2008.00370.x","title":"Protein Targeting into Secondary Plastids1","year":2009,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; Tula Foundation","keywords":"Plastid; Biology; Endosymbiosis; Organelle; Protein targeting; Transport protein; Chloroplast; Cell biology; Membrane protein; Biochemistry; Membrane; Gene","authors":[{"name":"Kathrin Bolte","is_ca":false},{"name":"Lars Bullmann","is_ca":false},{"name":"Franziska Hempel","is_ca":false},{"name":"Andrew Bozarth","is_ca":false},{"name":"Stefan Zauner","is_ca":false},{"name":"Uwe‐G. Maier","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01064843089147444,"gpt":0.260638000389441,"spread":0.2499895694979665,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007374703,0.0006298283,0.001909334,0.0002512254,0.0001071731,0.00003547589,0.0009008839,0.0009778059,0.000134813],"category_scores_gemma":[0.0003794557,0.0004761517,0.0009018249,0.0001594196,0.00012825,0.000008844997,0.0002429147,0.0009111768,0.00004111739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007974332,"about_ca_system_score_gemma":0.001356679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002873139,"about_ca_topic_score_gemma":0.000001767436,"domain_scores_codex":[0.9969952,0.0003263891,0.001485697,0.000533689,0.0001011217,0.0005579507],"domain_scores_gemma":[0.9975812,0.00005370438,0.001519745,0.000390523,0.0002507382,0.0002040622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001784952,0.0003292316,8.440346e-7,0.008826816,0.001081513,0.0002773429,0.0001022917,0.00003035442,0.3271007,0.0001205416,0.008205752,0.6537461],"study_design_scores_gemma":[0.0004504474,0.00131916,8.992777e-8,0.003676706,0.0004126607,0.003892023,0.00003623605,0.000002376892,0.01828735,0.000266048,0.9711718,0.0004850872],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001997095,0.9956778,0.001047978,0.00004506651,0.0003904158,0.0004863218,0.0000620589,0.000009622632,0.0002835929],"genre_scores_gemma":[0.001033996,0.993504,0.003134213,0.0002196014,0.001183428,0.0000145246,0.0002994139,0.00008073255,0.000530068],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9629661,"threshold_uncertainty_score":0.999769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105539198","doi":"10.1111/j.1550-7408.2001.tb00307.x","title":"Pseudoloma neurophilia n. g., n. sp., a New Microsporidium from the Central Nervous System of the Zebrafish (Danio rerio)","year":2001,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Center for Research Resources; National Institutes of Health; University of Oregon","keywords":"Biology; Microsporidia; Polar filament; Danio; Zoology; Spore; Zebrafish; Anatomy; Ribosomal DNA; Phylogenetics; Microbiology; Genetics","authors":[{"name":"J. L. Matthews","is_ca":false},{"name":"Amanda M. V. Brown","is_ca":true},{"name":"Karen D. Larison","is_ca":false},{"name":"Janell K. Bishop-Stewart","is_ca":false},{"name":"Paul A. Rogers","is_ca":false},{"name":"Michael L. Kent","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008168202287601543,"gpt":0.2004529797139655,"spread":0.192284777426364,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004250833,0.0003125597,0.000714143,0.00008226967,0.0002967057,0.00002508408,0.0009723857,0.0003748654,0.0003026927],"category_scores_gemma":[0.0004146037,0.0001791031,0.0004920692,0.0003225639,0.0006142691,0.000083649,0.0001944557,0.0008007357,0.000122296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001119037,"about_ca_system_score_gemma":0.0004576174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006777293,"about_ca_topic_score_gemma":0.0001051314,"domain_scores_codex":[0.9971935,0.0007044686,0.001150682,0.0002719799,0.0000510122,0.0006283791],"domain_scores_gemma":[0.9969832,0.0009510977,0.001112191,0.0006218333,0.0002606718,0.00007102039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003782074,0.0002088963,0.08228182,0.00001687862,0.0004440228,0.0001216506,0.0003862004,0.0001146852,0.8043352,0.0007693403,0.110516,0.000427059],"study_design_scores_gemma":[0.006124435,0.001252218,0.6193109,0.0005841362,0.001141486,0.04314509,0.0009647553,0.000006749662,0.1296261,0.0004794018,0.1967432,0.0006216369],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9827363,0.004671163,0.0004418682,0.002289784,0.008892309,0.0002846036,0.0001628418,0.00002535433,0.0004957581],"genre_scores_gemma":[0.9968365,0.000314213,0.000150783,0.001307152,0.0006604827,0.000001616015,0.0000267762,0.00002831737,0.0006741418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6747091,"threshold_uncertainty_score":0.7303613,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045676521","doi":"10.1111/j.1550-7408.2010.00476.x","title":"The Protozooplankton–Ichthyoplankton Trophic Link: An Overlooked Aspect of Aquatic Food Webs1","year":2010,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Isotope Analysis in Ecology","field":"Environmental Science","cited_by":93,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Trophic level; Ichthyoplankton; Biology; Ecology; Predation; Plankton; Food chain; Abundance (ecology); Zoology; Fishery","authors":[{"name":"David J. S. Montagnes","is_ca":false},{"name":"John F. Dower","is_ca":true},{"name":"Gisela M. Figueiredo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01755070709835644,"gpt":0.2654785260076902,"spread":0.2479278189093338,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002496562,0.0006959089,0.00314888,0.0003346314,0.0002611314,0.00005172324,0.00244608,0.001091401,0.001546222],"category_scores_gemma":[0.0006298973,0.0004169884,0.001169032,0.000521072,0.001207878,0.0001898437,0.000449409,0.002286854,0.0004601837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003952986,"about_ca_system_score_gemma":0.0004514717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001840372,"about_ca_topic_score_gemma":0.0002710038,"domain_scores_codex":[0.9939138,0.001616075,0.002784439,0.0005890219,0.0002943585,0.0008023164],"domain_scores_gemma":[0.9935446,0.001181908,0.003825578,0.001160278,0.0000741468,0.0002134612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004192357,0.001526001,0.006876354,0.003602763,0.004223962,0.0005847515,0.001089504,0.0008844873,0.002795815,0.0007057739,0.009140452,0.9681509],"study_design_scores_gemma":[0.0007744318,0.003619782,0.0002443401,0.001045995,0.002476562,0.00568104,0.00005358228,0.0001051292,0.00006361619,0.0007522551,0.9845864,0.000596835],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02677195,0.967864,0.00008139748,0.0002417128,0.001291587,0.002383595,0.00008255898,0.00002339556,0.00125974],"genre_scores_gemma":[0.004378115,0.9924496,0.001288768,0.0001513859,0.0008110221,0.00006080058,0.00007121639,0.0001089178,0.000680143],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.975446,"threshold_uncertainty_score":0.9998282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157003221","doi":"10.1111/j.1550-7408.2006.00116.x","title":"Species of Tetrahymena Identical by Small Subunit rRNA Gene Sequences are Discriminated by Mitochondrial Cytochrome c Oxidase I Gene Sequences","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Tetrahymena; Biology; Tetrahymena pyriformis; Ribosomal RNA; Gene; Genetics; Cytochrome c oxidase; Nucleic acid sequence; Molecular biology; Mitochondrion","authors":[{"name":"Denis H. Lynn","is_ca":true},{"name":"Michaela C. Strüder‐Kypke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00964227047096511,"gpt":0.2072211072566285,"spread":0.1975788367856634,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002895904,0.0003787561,0.0007349158,0.0001074409,0.0001186343,0.00003626703,0.0006050555,0.0003035141,0.00004632166],"category_scores_gemma":[0.00009314147,0.0003102387,0.0003182023,0.0001484465,0.0007138382,0.000005420937,0.0001744288,0.0002275255,0.000004970298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003799134,"about_ca_system_score_gemma":0.0001533495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001427171,"about_ca_topic_score_gemma":0.0001021824,"domain_scores_codex":[0.9975546,0.0002126414,0.001167275,0.0004175054,0.0001353809,0.0005125826],"domain_scores_gemma":[0.9981237,0.00007416335,0.001003332,0.0002973616,0.0003741859,0.0001272284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001916948,0.0002235942,0.006172429,0.00003270409,0.0002584477,0.00004495128,0.00003818985,0.00006764843,0.9694322,0.00002360962,0.02348104,0.00003346091],"study_design_scores_gemma":[0.001285176,0.00101828,0.005386783,0.00003760963,0.000175222,0.0007724889,0.0001651193,0.000002183015,0.9827456,0.0002541799,0.00780384,0.0003535191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823767,0.01488552,0.0007008239,0.0003634024,0.0006659614,0.0001875638,0.0006601303,0.00000345697,0.000156457],"genre_scores_gemma":[0.9942853,0.001533568,0.002240414,0.0002323067,0.0006215879,0.000004707951,0.0002431784,0.00003128406,0.0008076507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0156772,"threshold_uncertainty_score":0.999935,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965997614","doi":"10.1111/j.1550-7408.2008.00386.x","title":"PCR‐Based Diversity Estimates of Artificial and Environmental 18S rRNA Gene Libraries","year":2008,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Primer (cosmetics); Library; Ribosomal RNA; Genetics; Polymerase chain reaction; Gene; Dinoflagellate; Environmental DNA; clone (Java method); Computational biology; Evolutionary biology; 16S ribosomal RNA; Ecology; Biodiversity","authors":[{"name":"Marianne Potvin","is_ca":true},{"name":"Connie Lovejoy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01820112270216592,"gpt":0.1928121878376169,"spread":0.1746110651354509,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002286228,0.0001379798,0.0003780256,0.00006796481,0.0003376845,0.000003320087,0.0003353729,0.0001549941,0.00270933],"category_scores_gemma":[0.00004754578,0.0001203723,0.00009540353,0.00006619165,0.001599384,0.0001371975,0.0005996958,0.0002750242,0.00003407686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004523079,"about_ca_system_score_gemma":0.00002982279,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005036737,"about_ca_topic_score_gemma":0.00003619587,"domain_scores_codex":[0.998981,0.0002077131,0.0004162891,0.000134063,0.00004661621,0.0002143213],"domain_scores_gemma":[0.9991117,0.0002618478,0.0003912543,0.000152626,0.000007811622,0.0000747211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002408974,0.0002188373,0.21878,0.000007118261,0.00004630481,0.00004700746,0.0004729851,0.0003395663,0.7771489,0.00002301668,0.00246631,0.0002091005],"study_design_scores_gemma":[0.001564166,0.002385814,0.6732078,0.00002909436,0.00017903,0.003677691,0.0002385201,0.0003250298,0.312065,0.004029264,0.001813375,0.0004852253],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989338,0.0002222077,0.0002998399,0.0001380738,0.0001799857,0.00006568841,0.00003859568,0.000004872421,0.0001169507],"genre_scores_gemma":[0.9956105,0.00009477171,0.003891241,0.0003064807,0.00003496576,2.540411e-7,0.00002931346,0.000006359333,0.00002615496],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4650839,"threshold_uncertainty_score":0.9982023,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2313251513","doi":"10.1111/jeu.12315","title":"Comparative Metabolism of Free‐living Bodo saltans and Parasitic Trypanosomatids","year":2016,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"European Cooperation in Science and Technology","keywords":"Biology; Biochemistry; Gene; Pentose phosphate pathway; Enzyme; Glycolysis","authors":[{"name":"Fred R. Opperdoes","is_ca":false},{"name":"Anzhelika Butenko","is_ca":false},{"name":"Pavel Flegontov","is_ca":false},{"name":"Vyacheslav Yurchenko","is_ca":false},{"name":"Julius Lukeš","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05315418120686903,"gpt":0.3680745178493672,"spread":0.3149203366424982,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001409572,0.0004046733,0.00402687,0.0006006183,0.00006589747,0.00001710559,0.0004933519,0.0003791263,0.0003169965],"category_scores_gemma":[0.0008940001,0.0002407499,0.0006047057,0.0003397598,0.0006276771,0.000105049,0.000150257,0.0007376771,0.00003889055],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001244848,"about_ca_system_score_gemma":0.001092321,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004450595,"about_ca_topic_score_gemma":0.000003052486,"domain_scores_codex":[0.9968745,0.0005143235,0.001709947,0.0002886116,0.0001670157,0.0004455865],"domain_scores_gemma":[0.9953293,0.001637781,0.001572278,0.0005666807,0.0005785238,0.0003154652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004254877,0.001860487,0.0003711892,0.04369113,0.01166072,0.0004056914,0.001025054,4.105419e-7,0.3445185,0.005184702,0.09366256,0.497194],"study_design_scores_gemma":[0.001337544,0.0009734901,0.003562029,0.02635204,0.002140129,0.01577089,0.00007417038,3.881222e-7,0.0003890455,0.0001973379,0.9488967,0.0003062538],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001417229,0.9961331,0.0002091078,0.0002752574,0.0002881231,0.0005638881,0.0003870629,0.00000932861,0.0007168428],"genre_scores_gemma":[0.001642219,0.9959564,0.001371086,0.0000747271,0.0004311441,0.000009509457,0.0000280578,0.00003744145,0.0004494514],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8552341,"threshold_uncertainty_score":0.9817497,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136619804","doi":"10.1111/j.1550-7408.2000.tb00069.x","title":"Phylogenetic Relationships of the Subclass Peniculia (Oligohymenophorea, Ciliophora) Inferred from Small Subunit rRNA Gene Sequences","year":2000,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Biology; Paramecium; Phylogenetics; Phylogenetic tree; Maximum parsimony; Clade; Evolutionary biology; Monophyly; Genetics; Gene","authors":[{"name":"Michaela C. Strüder‐Kypke","is_ca":true},{"name":"André‐Denis G. Wright","is_ca":true},{"name":"Sergei I. Fokin","is_ca":false},{"name":"Denis H. Lynn","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0188754896798949,"gpt":0.2038776099079521,"spread":0.1850021202280572,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003551944,0.0001935844,0.0003389918,0.00006746794,0.0001460818,0.00001342605,0.0007507071,0.0003044471,0.0003199763],"category_scores_gemma":[0.000111757,0.0001455394,0.0002457516,0.0001717669,0.0003552055,0.000005940981,0.0001293765,0.0003331365,0.00002176088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003084745,"about_ca_system_score_gemma":0.000252791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009130753,"about_ca_topic_score_gemma":0.0001273705,"domain_scores_codex":[0.9984187,0.0004417028,0.0005674948,0.0002312548,0.00008496355,0.0002559174],"domain_scores_gemma":[0.9987727,0.00007121349,0.0004728307,0.0003911915,0.0002020713,0.00008995624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002152612,0.00007423471,0.1647214,0.000008044136,0.0001880123,0.0000123304,0.0001021689,0.000314578,0.8331895,0.00001520451,0.0008200599,0.0003392723],"study_design_scores_gemma":[0.001226748,0.0006869994,0.386006,0.00004854844,0.0002141455,0.0006092334,0.00009195747,0.000009859927,0.6049075,0.0008863219,0.00503914,0.0002736391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955649,0.003039796,0.00007024068,0.0002525288,0.00032534,0.0001585562,0.0001842863,0.000002640508,0.0004017338],"genre_scores_gemma":[0.9973948,0.0006170007,0.0009219944,0.0002148711,0.0002118953,0.000001384186,0.00007859166,0.00001245695,0.0005470291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.228282,"threshold_uncertainty_score":0.5934924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2602695958","doi":"10.1111/jeu.12414","title":"UniEuk: Time to Speak a Common Language in Protistology!","year":2017,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of Saskatchewan; University of British Columbia","funders":"Agence Nationale de la Recherche; Gordon and Betty Moore Foundation","keywords":"Biology; Taxonomy (biology); Protist; Taxon; Ecology; Evolutionary biology; Phylogenetic tree; Data science; Computational biology; Computer science; Genetics; Gene","authors":[{"name":"Cédric Berney","is_ca":false},{"name":"Andreea Ciuprina","is_ca":false},{"name":"Sara J. Bender","is_ca":false},{"name":"Juliet Brodie","is_ca":false},{"name":"Virginia P. Edgcomb","is_ca":false},{"name":"Eunsoo Kim","is_ca":false},{"name":"Jeena Rajan","is_ca":false},{"name":"Laura Wegener Parfrey","is_ca":true},{"name":"Sina M. Adl","is_ca":true},{"name":"Stéphane Audic","is_ca":false},{"name":"David Bass","is_ca":false},{"name":"David A. Caron","is_ca":false},{"name":"Guy Cochrane","is_ca":false},{"name":"Lucas Czech","is_ca":false},{"name":"Micah Dunthorn","is_ca":false},{"name":"Stefan Geisen","is_ca":false},{"name":"Frank Oliver Glöckner","is_ca":false},{"name":"Frédéric Mahé","is_ca":false},{"name":"Christian Quast","is_ca":false},{"name":"Jonathan Z. Kaye","is_ca":false},{"name":"Alastair G. B. Simpson","is_ca":true},{"name":"Alexandros Stamatakis","is_ca":false},{"name":"Javier del Campo","is_ca":true},{"name":"Pelin Yilmaz","is_ca":false},{"name":"Colomban de Vargas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02957416696695783,"gpt":0.322935786279848,"spread":0.2933616193128902,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006446902,0.0003787105,0.001815167,0.0003190492,0.00007512282,0.00002584015,0.001294937,0.0007253912,0.0001567889],"category_scores_gemma":[0.0002292005,0.0003198032,0.0005328565,0.00009598118,0.0001658416,0.000005284541,0.0004685815,0.0005892568,0.0004234413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007303778,"about_ca_system_score_gemma":0.0004284238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001494687,"about_ca_topic_score_gemma":0.0000568484,"domain_scores_codex":[0.9978876,0.0004672496,0.0008231493,0.0003648624,0.00005528173,0.0004018736],"domain_scores_gemma":[0.9980634,0.00004793863,0.001051732,0.0006051529,0.00008696804,0.0001447911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006658286,0.0007734132,0.001897212,0.006877785,0.001783275,0.003416142,0.0003574151,0.00001260209,0.03120228,0.00003717563,0.09530081,0.857676],"study_design_scores_gemma":[0.0004603216,0.0007277915,0.0001317337,0.00189704,0.0002295485,0.003812498,0.000007674841,1.084031e-7,0.0001844101,0.00001008182,0.9922039,0.0003348882],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00230738,0.9951898,0.00001941697,0.00007833259,0.0004187315,0.0007264408,0.0001913692,0.000003516654,0.001065017],"genre_scores_gemma":[0.0004404008,0.9940143,0.0007364103,0.0003481687,0.0006338292,0.00001303185,0.0003487627,0.0000520395,0.003413074],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8969031,"threshold_uncertainty_score":0.9999254,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2181011150","doi":"10.1111/j.1550-7408.2004.tb00172.x","title":"Actin and Ubiquitin Protein Sequences Support a Cercozoan/Foraminiferan Ancestry for the Plasmodiophorid Plant Pathogens","year":2004,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Protist; Phylogenetic tree; Gene; Phylogenetics; Genetics; Cullin; Ubiquitin ligase; Ubiquitin","authors":[{"name":"John M. Archibald","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02631905842488867,"gpt":0.2276562301617642,"spread":0.2013371717368755,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003493493,0.0001461862,0.0002686734,0.00001603015,0.0001893021,0.00004154649,0.000267048,0.000113396,0.00003963507],"category_scores_gemma":[0.00006151543,0.00004911562,0.0001237776,0.00008610322,0.0001583669,0.00006385271,0.00003232487,0.0001567075,0.000003301973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002739677,"about_ca_system_score_gemma":0.00008864061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001585231,"about_ca_topic_score_gemma":0.0002215292,"domain_scores_codex":[0.9990358,0.00005270419,0.0003681837,0.0001679519,0.00007129376,0.0003040635],"domain_scores_gemma":[0.9991977,0.0002757336,0.0002977661,0.00004430758,0.000082469,0.0001020786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003802434,0.00007211825,0.001636924,0.00003372689,0.00006414118,0.00009599238,0.0000990375,0.00004244814,0.9933314,0.0001131319,0.0006647044,0.003466142],"study_design_scores_gemma":[0.007690687,0.01674584,0.209333,0.001136161,0.0009227826,0.02310086,0.007592369,0.0000660666,0.4931481,0.01787584,0.2201729,0.002215453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994395,0.001708184,0.00002758218,0.00265436,0.0001903403,0.0002947133,0.0006972283,0.00000717308,0.00002547555],"genre_scores_gemma":[0.998069,0.0007176512,0.0004018173,0.0003370968,0.0003579032,0.000009299873,0.0000524447,0.000001341143,0.00005347638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5001833,"threshold_uncertainty_score":0.2002877,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093698246","doi":"10.1111/j.1550-7408.2003.tb00145.x","title":"Molecular Phylogeny and Surface Morphology of Colpodella edax (Alveolata): Insights into the Phagotrophic Ancestry of Apicomplexans","year":2003,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; National Science Foundation","keywords":"Biology; Morphology (biology); Evolutionary biology; Phylogenetics; Zoology; Genetics; Gene","authors":[{"name":"Brian S. Leander","is_ca":true},{"name":"Olga N. Kuvardina","is_ca":false},{"name":"В. В. Алешин","is_ca":true},{"name":"Alexander P. Mylnikov","is_ca":false},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01089902565094057,"gpt":0.2240603448403103,"spread":0.2131613191893698,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003040286,0.0001837683,0.0004396703,0.00006333892,0.00007113105,0.000005074739,0.0004132822,0.0002501463,0.00002566579],"category_scores_gemma":[0.00009637073,0.0001368701,0.0001762188,0.0001216627,0.0006668874,0.000006411293,0.0001375614,0.0002280408,9.759679e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001126052,"about_ca_system_score_gemma":0.0001556358,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001986164,"about_ca_topic_score_gemma":0.000009278343,"domain_scores_codex":[0.998578,0.0003803163,0.0005300731,0.0002214482,0.00007011284,0.0002201165],"domain_scores_gemma":[0.9987254,0.00006280239,0.0005913588,0.0003090184,0.000239682,0.00007174314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001621079,0.0001138601,0.01625919,0.00004969807,0.0002278163,0.00003378473,0.0002083216,0.0005496213,0.9811891,0.0008724328,0.000276059,0.00005805468],"study_design_scores_gemma":[0.001271656,0.001327197,0.005060369,0.00003030504,0.000128407,0.001324322,0.0001788311,0.000009862498,0.9863915,0.00140261,0.002688558,0.0001864025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847844,0.01342488,0.00106223,0.00009957096,0.0002557698,0.0001361435,0.00002183282,0.00000134118,0.0002138793],"genre_scores_gemma":[0.9967621,0.00105969,0.001827809,0.0002420093,0.00005105006,5.853451e-7,0.00001698504,0.000009645507,0.00003014204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01236519,"threshold_uncertainty_score":0.5581403,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136141493","doi":"10.1111/j.1550-7408.2004.tb00547.x","title":"Transfer of Nosema locustae (Microsporidia) to Antonospora locustae n. comb. Based on Molecular and Ultrastructural Data1","year":2004,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Canadian Institute for Advanced Research; Burroughs Wellcome Fund","keywords":"Biology; Nosema; Microsporidia; Zoology; Genus; Phylogenetic tree; Evolutionary biology; Spore; Botany; Genetics; Gene","authors":[{"name":"Claudio H. Slamovits","is_ca":true},{"name":"Ben Williams","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009796222384941778,"gpt":0.2384611620537855,"spread":0.2286649396688437,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005643454,0.0003786507,0.0008805852,0.0003508372,0.0001298166,0.00001898491,0.0005828761,0.0004049163,0.0001876863],"category_scores_gemma":[0.0002719816,0.0003169967,0.0001836717,0.0002808135,0.0005310309,0.0001648247,0.00009745792,0.0006185406,0.00006288643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009400142,"about_ca_system_score_gemma":0.000388956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007861189,"about_ca_topic_score_gemma":0.000009319339,"domain_scores_codex":[0.9976834,0.0002241836,0.001034221,0.0004351666,0.00005786207,0.0005651723],"domain_scores_gemma":[0.9982097,0.0004495595,0.000293794,0.0006072489,0.0003194303,0.0001202786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007719462,0.0005096578,0.004530029,0.00006357607,0.0003317548,0.0002133242,0.0003229477,0.02624386,0.9608896,0.001362907,0.004049242,0.0007111312],"study_design_scores_gemma":[0.01311392,0.005148594,0.005034252,0.000528758,0.0006767578,0.008442003,0.0005412983,0.00004286907,0.9475527,0.0005664086,0.01744111,0.0009113512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850549,0.001077991,0.01089758,0.001073248,0.0007456205,0.0003113609,0.0006745826,0.00001834376,0.0001464016],"genre_scores_gemma":[0.9955103,0.00008597033,0.001878896,0.002157322,0.00006624222,0.000001904704,0.0002376252,0.00003188891,0.00002979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02620099,"threshold_uncertainty_score":0.9999282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106335972","doi":"10.1111/jeu.12268","title":"Diversity of Trypanosomatids in Cockroaches and the Description ofHerpetomonas tarakanasp. n.","year":2015,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Insects and Parasite Interactions","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"Ostravská Univerzita v Ostravě; Grantová Agentura České Republiky","keywords":"Biology; Cockroach; Subfamily; Genus; Zoology; Evolutionary biology; Genetics; Ecology; Gene","authors":[{"name":"Vyacheslav Yurchenko","is_ca":false},{"name":"Alexei Yu. Kostygov","is_ca":false},{"name":"J. Havlová","is_ca":false},{"name":"Anastasiia Grybchuk‐Ieremenko","is_ca":false},{"name":"Tereza Ševčíková","is_ca":false},{"name":"Julius Lukeš","is_ca":true},{"name":"Jan Ševčı́k","is_ca":false},{"name":"Jan Votýpka","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02812923809580453,"gpt":0.2263278829911866,"spread":0.1981986448953821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003962106,0.00005969611,0.0002263898,0.0000522333,0.00005129292,0.000003030884,0.0001511413,0.00005105239,0.0001184943],"category_scores_gemma":[0.00007388611,0.00003717242,0.00005690508,0.00009164127,0.0004074051,0.0001182518,0.000186522,0.0001325156,0.000005524165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005793742,"about_ca_system_score_gemma":0.00001736741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008931666,"about_ca_topic_score_gemma":0.0003475838,"domain_scores_codex":[0.9992893,0.0001756385,0.0003265671,0.00006154204,0.00005844513,0.00008846226],"domain_scores_gemma":[0.9994134,0.000120627,0.0003302181,0.00007332028,0.00002771133,0.00003467676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004697598,0.0001230129,0.8952203,0.000009858482,0.00004402572,0.00001137829,0.004906916,0.0009487139,0.09604926,0.0001587305,0.001783999,0.0002740778],"study_design_scores_gemma":[0.003060144,0.0005374843,0.9845436,0.00006226492,0.00008250408,0.0009235875,0.001269891,0.0003044889,0.006032486,0.002274245,0.0007978019,0.0001115179],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979691,0.0002289824,0.0001361376,0.00021744,0.0002062233,0.00005953075,0.000004177862,9.110178e-7,0.001177508],"genre_scores_gemma":[0.9993818,0.00004342227,0.0004054581,0.00007304973,0.00001761539,2.147629e-7,7.790499e-7,0.000002138696,0.00007554593],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09001677,"threshold_uncertainty_score":0.1515847,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105529952","doi":"10.1111/j.1550-7408.2006.00118.x","title":"Insights into the Evolutionary Origin and Genome Architecture of the Unicellular Opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Genome Atlantic; Genome Canada","keywords":"Biology; Evolutionary biology; Genome; Architecture; Zoology; Genetics; Gene; Geography","authors":[{"name":"Iñaki Ruiz‐Trillo","is_ca":true},{"name":"Christopher E. Lane","is_ca":true},{"name":"John M. Archibald","is_ca":true},{"name":"Andrew J. Roger","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003679281809807265,"gpt":0.1804044422355355,"spread":0.1767251604257282,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001882573,0.0001401981,0.0002139479,0.00004168047,0.0001650505,0.000009321298,0.0003424802,0.0001545634,0.000006314271],"category_scores_gemma":[0.00002508175,0.00008088582,0.0001034915,0.00008512015,0.0005869934,0.000006674372,0.0002585722,0.0002332492,8.154311e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001547059,"about_ca_system_score_gemma":0.0001019732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005340976,"about_ca_topic_score_gemma":0.00005222436,"domain_scores_codex":[0.9991208,0.0001753167,0.0003215001,0.0001569728,0.00006142684,0.0001639626],"domain_scores_gemma":[0.9992622,0.00003919746,0.0003222896,0.0002168194,0.0001126485,0.00004691644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000181974,0.00005258819,0.02386703,0.00003821973,0.00009427336,0.0000111106,0.000214151,0.0001151833,0.9742509,0.0003871584,0.0006275036,0.0001599111],"study_design_scores_gemma":[0.003969588,0.001848124,0.5340751,0.0001444056,0.000430601,0.005374493,0.0004862623,0.00001868905,0.2407498,0.01373868,0.198492,0.000672224],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845523,0.01409491,0.000288439,0.0006161268,0.0001588137,0.0001406427,0.00001748574,0.000001403096,0.0001299106],"genre_scores_gemma":[0.9979874,0.0004961227,0.0007471548,0.0004265444,0.0001812872,7.795389e-7,0.00001981555,0.000007415477,0.000133402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7335011,"threshold_uncertainty_score":0.3298428,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970315485","doi":"10.1111/j.1550-7408.2005.00087.x","title":"Ultrastructural Description ofBreviata anathema, N. Gen., N. Sp., the Organism Previously Studied as “Mastigamoeba invertens”","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Biology; Flagellate; Affinities; Evolutionary biology; Taxon; Phylogenetic tree; Convergent evolution; Molecular phylogenetics; Phylogenetics; Protist; Organelle; Genetics; Ecology; Botany; Biochemistry","authors":[{"name":"Giselle Walker","is_ca":false},{"name":"Joel B. Dacks","is_ca":true},{"name":"T. Martin Embley","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008340684061498065,"gpt":0.1990461584141664,"spread":0.1907054743526683,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004188947,0.0002054155,0.0003827264,0.00006709011,0.000125132,0.00001643411,0.0005368119,0.0001940949,0.00006515106],"category_scores_gemma":[0.0001344092,0.0001418899,0.000234868,0.0001222311,0.0003401292,0.00001106877,0.0001597341,0.0002318069,0.00001243327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000297632,"about_ca_system_score_gemma":0.0001630874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000057483,"about_ca_topic_score_gemma":0.00004837641,"domain_scores_codex":[0.9986224,0.0002107131,0.0005662419,0.0002170894,0.00008935112,0.0002941984],"domain_scores_gemma":[0.9987047,0.00004050561,0.0006069163,0.0002861323,0.000298758,0.00006295432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001626045,0.00007129715,0.03449663,0.00003216036,0.0002072054,0.00002069089,0.00008522213,0.00004258285,0.949548,0.0001861705,0.0149834,0.0001640263],"study_design_scores_gemma":[0.002966497,0.002471764,0.1438092,0.0001051336,0.0005168022,0.006428265,0.0003939872,0.000007581319,0.8278365,0.003681727,0.01124157,0.0005409467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939352,0.003907513,0.0008140184,0.0003249389,0.0005070095,0.0002170672,0.00004319535,0.000004022627,0.0002470921],"genre_scores_gemma":[0.9976224,0.0003153714,0.0007490759,0.0005249914,0.0004305765,0.000001050067,0.00006601643,0.00001484252,0.0002757075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1217115,"threshold_uncertainty_score":0.5786102,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2344440464","doi":"10.1111/jeu.12303","title":"Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea)","year":2016,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Centre National de la Recherche Scientifique; University of Connecticut","keywords":"Biology; Intraspecific competition; Biodiversity; Ecology; Identification (biology); Interspecific competition; Zoology","authors":[{"name":"Luciana F. Santoferrara","is_ca":false},{"name":"Charles Bachy","is_ca":false},{"name":"Viviana A. Alder","is_ca":false},{"name":"Jun Gong","is_ca":false},{"name":"YOUNG‐OK KIM","is_ca":false},{"name":"Alessandro Saccà","is_ca":false},{"name":"Inácio Domingos da Silva‐Neto","is_ca":false},{"name":"Michaela C. Strüder‐Kypke","is_ca":true},{"name":"Alan Warren","is_ca":false},{"name":"Dapeng Xu","is_ca":false},{"name":"Zhenzhen Yi","is_ca":false},{"name":"Sabine Agatha","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05725225557132673,"gpt":0.3264377207878609,"spread":0.2691854652165342,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001092261,0.0003383465,0.001357117,0.0001822628,0.000163591,0.000009828438,0.001087916,0.0003867737,0.00001782286],"category_scores_gemma":[0.0004614598,0.0001639967,0.0008095044,0.0003717205,0.0006606283,0.000006861247,0.0008936686,0.0005119744,0.00001523061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001061936,"about_ca_system_score_gemma":0.0003428625,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002095342,"about_ca_topic_score_gemma":0.00002119298,"domain_scores_codex":[0.9974779,0.0008505336,0.0009977451,0.0003069142,0.00005856522,0.0003082737],"domain_scores_gemma":[0.9972076,0.0002014395,0.001814382,0.0005062213,0.0002223766,0.00004796912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003708844,0.0006745478,0.008371699,0.03032829,0.007362099,0.003521588,0.00108527,0.000005989787,0.009849439,0.0002609412,0.0176773,0.9204919],"study_design_scores_gemma":[0.001162067,0.0007385665,0.0001825282,0.009871397,0.001797855,0.03302998,0.0006153049,1.536338e-7,0.001030939,0.0000843978,0.9508474,0.0006393894],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009042948,0.9894084,0.00001267254,0.00007016694,0.0005635833,0.0006568414,0.0002162831,0.000001617419,0.00002742813],"genre_scores_gemma":[0.002311784,0.9972534,0.00009323,0.00005080191,0.0001902078,0.000006039233,0.00001425963,0.00001150301,0.00006878774],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9331701,"threshold_uncertainty_score":0.6687593,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2998753307","doi":"10.1111/jeu.12784","title":"Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates","year":2020,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Agriculture and Agri-Food Canada; Sveriges Lantbruksuniversitet; Saskatchewan Canola Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Effector; Transcriptome; Clubroot; Computational biology; Genetics; Botany; Gene; Cell biology; Gene expression","authors":[{"name":"Edel Pérez‐López","is_ca":true},{"name":"Md Musharaf Hossain","is_ca":true},{"name":"J. C. Tu","is_ca":true},{"name":"Matthew Waldner","is_ca":true},{"name":"Christopher D. Todd","is_ca":true},{"name":"Anthony Kusalik","is_ca":true},{"name":"Yangdou Wei","is_ca":true},{"name":"Peta C. Bonham‐Smith","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01003752397147321,"gpt":0.2039706769074932,"spread":0.1939331529360199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001664982,0.0001495834,0.0004620841,0.00004587056,0.00009003649,0.00004785274,0.0002117223,0.0001125123,0.0005317026],"category_scores_gemma":[0.00004603919,0.0000626582,0.000401341,0.0005786764,0.00007431296,0.000110327,0.00002486159,0.0002096716,0.00004454011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002153465,"about_ca_system_score_gemma":0.00003003921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003601205,"about_ca_topic_score_gemma":0.000338653,"domain_scores_codex":[0.9989098,0.0001634065,0.0004287468,0.0001863872,0.00008220856,0.000229493],"domain_scores_gemma":[0.9992375,0.0001647667,0.0002788826,0.00003677688,0.00009873448,0.0001833866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001716201,0.00004582612,0.03800798,0.00001907655,0.0004593905,0.00004747148,0.00005819279,0.00005998002,0.9535982,0.000004268354,0.006487317,0.001040686],"study_design_scores_gemma":[0.001013218,0.00180249,0.7952272,0.00006245674,0.002262416,0.0003511342,0.0001429943,0.0001122811,0.1344665,0.000167442,0.06381108,0.0005808257],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957148,0.001956707,0.00004449536,0.001565713,0.0002446567,0.00007524886,0.0003179408,0.00001629226,0.00006414318],"genre_scores_gemma":[0.998108,0.0004916933,0.00003412057,0.0008825659,0.0003048879,0.000001002223,0.0001422794,0.000001083767,0.00003438718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8191317,"threshold_uncertainty_score":0.582177,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144027634","doi":"10.1111/j.1550-7408.2000.tb00052.x","title":"Descriptions and Phylogenetic Systematics of Myxobolus spp. from Cyprinids in Algonquin Park, Ontario","year":2000,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Myxozoan Parasites in Aquatic Species","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Myxobolus; Systematics; Phylogenetic tree; Taxonomy (biology); Zoology; Cladogram; Morphology (biology); Myxosporea; Phylogenetics; Ribosomal DNA; Evolutionary biology; Spore; Cladistics; Botany; Genetics; Fishery; Fish ","authors":[{"name":"Kowthar Y. Salim","is_ca":true},{"name":"Sherwin S. Desser","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01012954807318616,"gpt":0.2214483010726832,"spread":0.211318752999497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003629209,0.0001876375,0.0005414301,0.0001085263,0.00002638458,0.00001191141,0.0002999206,0.0002110664,0.000760703],"category_scores_gemma":[0.00009872111,0.0001654272,0.0001185737,0.00008638113,0.0002507447,0.000005717122,0.00007151932,0.0001948701,0.00001746527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005721133,"about_ca_system_score_gemma":0.0001715694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005855165,"about_ca_topic_score_gemma":0.003299661,"domain_scores_codex":[0.9983,0.0002070087,0.0009619311,0.0002204781,0.00007161754,0.0002389827],"domain_scores_gemma":[0.9990222,0.00008949661,0.0003991358,0.0003165937,0.00009491398,0.00007764943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001489502,0.0001403165,0.1710224,0.00005184329,0.0001649874,0.00002271872,0.0003768176,0.0002605346,0.8256076,0.00002714331,0.001678532,0.0004981771],"study_design_scores_gemma":[0.009538126,0.004734324,0.6447067,0.001529575,0.0007392423,0.006045247,0.00109578,0.0002030881,0.288606,0.001992295,0.03935835,0.001451197],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947947,0.00354032,0.0003797191,0.00004641094,0.0002110413,0.0001487376,0.00003585266,0.000001753563,0.0008414712],"genre_scores_gemma":[0.990527,0.0006319026,0.00754073,0.0001513007,0.0001373081,0.000002424465,0.00003295228,0.0000162578,0.0009601598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5370016,"threshold_uncertainty_score":0.8329165,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964932959","doi":"10.1111/j.1550-7408.2012.00623.x","title":"Reconciling Cladistic and Genetic Analyses in Choreotrichid Ciliates (Ciliophora, Spirotricha, Oligotrichea)","year":2012,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Reticulate; Ciliata; Genus; Taxonomy (biology); Cladistics; Zoology; Taxon; Anatomy; Phylogenetics; Protozoa; Botany; Genetics","authors":[{"name":"Sabine Agatha","is_ca":false},{"name":"Michaela C. Strüder‐Kypke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02964004489384142,"gpt":0.2847399233557941,"spread":0.2550998784619526,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003768209,0.0001870378,0.000376371,0.0002750217,0.00006007764,0.00001336969,0.0002362766,0.0002344716,0.0000415828],"category_scores_gemma":[0.0002780043,0.0001670584,0.0001272559,0.0001874099,0.000135275,0.00001132825,0.0001283703,0.000240117,0.00001088741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004195676,"about_ca_system_score_gemma":0.00009040945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003122134,"about_ca_topic_score_gemma":0.00002786421,"domain_scores_codex":[0.9986354,0.0001926279,0.0005035804,0.0002039714,0.00005733553,0.0004071176],"domain_scores_gemma":[0.999185,0.00006591542,0.0002998265,0.0001680528,0.0001162466,0.0001650113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000143709,0.00009707661,0.4488384,0.00002961427,0.00009817799,0.00003530441,0.0001113144,0.00007584155,0.5493296,0.000009440166,0.0005122085,0.0007193702],"study_design_scores_gemma":[0.002032426,0.001031896,0.9246861,0.00005604238,0.0002105429,0.003299492,0.0002232822,0.00002842907,0.06473614,0.0002020276,0.003019664,0.0004739342],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9756592,0.02328569,0.0003504018,0.00007142541,0.0003586616,0.0001218179,0.00002217531,0.000002510071,0.0001281465],"genre_scores_gemma":[0.9959537,0.001425401,0.001881578,0.0002389154,0.0003840411,0.000001572575,0.00001869393,0.00001165677,0.00008437694],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4845935,"threshold_uncertainty_score":0.6812444,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026725209","doi":"10.1111/j.1550-7408.2011.00585.x","title":"Survey of the Efficacy of a Short Fragment of the rbcL Gene as a Supplemental DNA Barcode for Diatoms","year":2011,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Allison University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Genomics Institute; Genome Canada","keywords":"Biology; DNA barcoding; Gene; Internal transcribed spacer; Ribosomal RNA; DNA; Genetics; Mitochondrial DNA; Barcode; Evolutionary biology","authors":[{"name":"Michael L. MacGillivary","is_ca":true},{"name":"Irena Kaczmarska","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03462777231407024,"gpt":0.2800911669770198,"spread":0.2454633946629496,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002830741,0.000235567,0.000767854,0.00014331,0.0001055491,0.00001647309,0.001537432,0.0001532489,0.00023559],"category_scores_gemma":[0.001594193,0.0001315619,0.0004699169,0.0003059979,0.0006729585,0.00009052152,0.0005333301,0.0002634454,0.000009794244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000652192,"about_ca_system_score_gemma":0.0005399109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003826855,"about_ca_topic_score_gemma":0.0001395134,"domain_scores_codex":[0.9968051,0.0007083379,0.001300457,0.000267328,0.0003225954,0.0005962007],"domain_scores_gemma":[0.9960278,0.001675072,0.001089775,0.0005348454,0.0005440653,0.0001284701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005031843,0.000552439,0.09533174,0.00008096296,0.0001493878,0.000003982515,0.0007552363,0.00002861286,0.8988014,0.0001568823,0.004001667,0.00008734979],"study_design_scores_gemma":[0.001079703,0.0006981018,0.2708086,0.00008415335,0.0000772183,0.0001095241,0.0002338244,0.00001078081,0.7262361,0.000151675,0.0004807042,0.0000296099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968604,0.0005692648,0.0001258147,0.0000509958,0.0007919591,0.0006097208,0.0007901734,0.000003835076,0.000197843],"genre_scores_gemma":[0.9986823,0.00008745661,0.0008408612,0.00009107491,0.00008459631,0.000007757859,0.00001464991,0.00002670706,0.0001646518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1754769,"threshold_uncertainty_score":0.536494,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2460722881","doi":"10.1111/jeu.12342","title":"Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes","year":2016,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Phylogenetic tree; Clade; Phylogenetics; Ecology; Evolutionary biology; Database; Identification (biology); Environmental data; Tree of life (biology); Computer science; Gene","authors":[{"name":"Jingwen Pan","is_ca":true},{"name":"Javier del Campo","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01681581803167291,"gpt":0.2103134161319528,"spread":0.1934975981002799,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000136085,0.0000870017,0.0001820981,0.00003244328,0.00004215995,0.00000167056,0.0001569926,0.00007684284,0.00001942106],"category_scores_gemma":[0.00003865137,0.00005656492,0.00005417218,0.00001434635,0.0002747212,0.000001190508,0.0003291758,0.00004127964,0.000001419475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001102812,"about_ca_system_score_gemma":0.00002441028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004500063,"about_ca_topic_score_gemma":0.000008515368,"domain_scores_codex":[0.9994617,0.00004647336,0.0002222016,0.0001226848,0.00002825385,0.0001186891],"domain_scores_gemma":[0.9995581,0.00003348964,0.0002190849,0.0001099274,0.00003819009,0.00004119653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006359156,0.00002118691,0.1206365,0.000005033936,0.00007513654,0.000002991585,0.0000367653,9.571132e-7,0.8767727,0.00003070608,0.0001695501,0.00218488],"study_design_scores_gemma":[0.001641135,0.001939573,0.2679425,0.00004818185,0.0000853174,0.0007514089,0.0001965682,8.726308e-7,0.720643,0.0004990296,0.006021727,0.0002306601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976214,0.001863007,0.00008699515,0.0001134568,0.00009241837,0.00003353195,0.00007747696,3.59356e-7,0.0001113707],"genre_scores_gemma":[0.9969269,0.002248083,0.000603657,0.00005219986,0.00005250337,2.402627e-7,0.000003281671,0.000004210274,0.0001089276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1561297,"threshold_uncertainty_score":0.2306651,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1581519751","doi":"10.1111/j.1550-7408.2011.00553.x","title":"Species Boundaries in Gregarine Apicomplexan Parasites: A Case Study—Comparison of Morphometric and Molecular Variability in Lecudina cf. tuzetae (Eugregarinorida, Lecudinidae)","year":2011,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Tula Foundation; Canadian Institute for Advanced Research","keywords":"Biology; Evolutionary biology; Apicomplexa; Zoology; Ecology; Protozoal disease","authors":[{"name":"Sonja Rueckert","is_ca":true},{"name":"PETRA M.A.H. VILLETTE","is_ca":true},{"name":"Brian S. Leander","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03370707963696789,"gpt":0.3098995213540464,"spread":0.2761924417170785,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001195622,0.0002411628,0.0007937677,0.0004480161,0.00009680336,0.00001991547,0.0003143689,0.0001603967,0.0006477775],"category_scores_gemma":[0.0003144238,0.0002063988,0.0001051246,0.0006756402,0.0009253959,0.0001876739,0.0002467439,0.0005450682,0.00001427797],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001811456,"about_ca_system_score_gemma":0.00005416972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003076373,"about_ca_topic_score_gemma":0.004720333,"domain_scores_codex":[0.9974406,0.0006092289,0.001156398,0.0003458003,0.00008740966,0.0003605701],"domain_scores_gemma":[0.9986202,0.000357684,0.0006156843,0.0002693349,0.0000405275,0.00009661547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002476423,0.001457961,0.9411641,0.00001271794,0.0000808882,0.001343253,0.00290732,0.00003895444,0.05204726,0.0001179113,0.0001047514,0.0004772123],"study_design_scores_gemma":[0.001430673,0.001350475,0.9794641,0.00002752796,0.00008124594,0.006767464,0.001728344,0.00003120016,0.00778353,0.0004191231,0.0006918209,0.0002245313],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968998,0.0003806977,0.0002697449,0.00005719194,0.000287498,0.0002667141,0.00001185481,0.000005240117,0.001821251],"genre_scores_gemma":[0.9983805,0.00002813663,0.001404493,0.0000794862,0.00001774472,0.000004557731,0.000002626735,0.000009331116,0.00007307166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04426373,"threshold_uncertainty_score":0.8416699,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111688953","doi":"10.1111/j.1550-7408.2001.tb00183.x","title":"On Core Jakobids and Excavate Taxa: The Ultrastructure of Jakoba incarcerata","year":2001,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Australian Biological Resources Study; Australian Research Council","keywords":"Biology; Flagellum; Anatomy; Ultrastructure; Flagellate; Basal body; Core (optical fiber); Dorsum; Botany; Paleontology","authors":[{"name":"Alastair G. B. Simpson","is_ca":true},{"name":"David J. Patterson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008629057703672657,"gpt":0.2149750904535881,"spread":0.2063460327499155,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002356128,0.0001264794,0.0002225946,0.00004632532,0.00007390011,0.000007618713,0.0002857527,0.0001634473,0.00004752736],"category_scores_gemma":[0.00008870827,0.00008283866,0.0000993791,0.00006701826,0.0002828541,0.000003584932,0.00009318208,0.0002113429,0.000002553497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007136388,"about_ca_system_score_gemma":0.00005572919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006482419,"about_ca_topic_score_gemma":0.000009349138,"domain_scores_codex":[0.9992852,0.00009287315,0.0002682197,0.0001388055,0.00004717005,0.0001677048],"domain_scores_gemma":[0.9992909,0.00004805356,0.0003018455,0.0001839597,0.000121042,0.00005415057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005239717,0.00004904426,0.06011966,0.00001617665,0.0001463467,0.00003128297,0.00008435258,0.00008318979,0.9312599,0.0004452109,0.006853351,0.0003874744],"study_design_scores_gemma":[0.006140056,0.008914566,0.4893008,0.0001935396,0.0003726861,0.01388526,0.0005581909,0.00001741144,0.4315536,0.006584069,0.04166615,0.0008136539],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997763,0.001015352,0.000244202,0.0002330501,0.0002438642,0.00008889071,0.00006263723,0.00000131441,0.0003476316],"genre_scores_gemma":[0.9979734,0.0007776912,0.0002236024,0.0006748882,0.0001757811,3.927943e-7,0.00002490907,0.000007279374,0.0001420772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4997063,"threshold_uncertainty_score":0.3378063,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064812182","doi":"10.1111/j.1550-7408.2005.00081.x","title":"Andalucia (n. gen.)—the Deepest Branch Within Jakobids (Jakobida; Excavata), Based on Morphological and Molecular Study of a New Flagellate from Soil","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Division of Ocean Sciences; Natural Sciences and Engineering Research Council of Canada; Genome Atlantic","keywords":"Flagellate; Biology; Monophyly; Botany; Protist; Taxonomy (biology); Basal body; Genus; Dorsum; Flagellum; Anatomy; Clade; Phylogenetic tree; Genetics","authors":[{"name":"Enrique Lara","is_ca":false},{"name":"Antonis Chatzinotas","is_ca":false},{"name":"Alastair G. B. Simpson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007592268468101861,"gpt":0.205414931774368,"spread":0.1978226633062661,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003502611,0.000224843,0.0004079329,0.00007529366,0.00008847847,0.00001931145,0.0004116812,0.0002447865,0.00004391227],"category_scores_gemma":[0.00007078248,0.0001609251,0.0001504203,0.0001022305,0.0002084406,0.000004924167,0.0001429658,0.0002820986,0.000005094539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001573774,"about_ca_system_score_gemma":0.0001353681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002152642,"about_ca_topic_score_gemma":0.0001532752,"domain_scores_codex":[0.9984995,0.0003097885,0.0005348171,0.0003123296,0.0001063848,0.000237226],"domain_scores_gemma":[0.9989265,0.0000690203,0.0004628099,0.0003334846,0.0001167456,0.00009143239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007782772,0.0004520207,0.04696669,0.000009376292,0.0001524934,0.0001927831,0.0001158647,0.002520144,0.9452514,0.00002155581,0.003367044,0.0001723434],"study_design_scores_gemma":[0.01223117,0.01181062,0.1355543,0.000105214,0.0005797695,0.001471261,0.0003629513,0.0001558388,0.8319538,0.002144206,0.002857272,0.0007736697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996705,0.001033739,0.001306622,0.0002554148,0.0002420675,0.0002394866,0.00005268172,0.000003593785,0.0001613724],"genre_scores_gemma":[0.998242,0.00003268761,0.0006036119,0.000727661,0.0002367697,0.000001222858,0.00005063626,0.0000146549,0.00009075715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1132976,"threshold_uncertainty_score":0.6562335,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092282685","doi":"10.1111/j.1550-7408.2011.00608.x","title":"Using Stable Isotopes to Differentiate Trophic Feeding Channels within Soil Food Webs","year":2012,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Isotope Analysis in Ecology","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Trophic level; Soil food web; Food web; Biology; Microbial food web; Bacterivore; Habitat; Ecology; Soil biology; Biomass (ecology); Isotope analysis; Food chain; Soil water","authors":[{"name":"Felicity Crotty","is_ca":true},{"name":"Sina M. Adl","is_ca":true},{"name":"Rod P. Blackshaw","is_ca":false},{"name":"P. J. Murray","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06419699957913036,"gpt":0.2914375887082178,"spread":0.2272405891290875,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001365005,0.000647055,0.003027758,0.0005450587,0.0001911778,0.00005960001,0.00120208,0.0005971817,0.003056736],"category_scores_gemma":[0.0001376504,0.0004780323,0.0008471871,0.0006099888,0.000235698,0.0002578528,0.000846547,0.0009715136,0.0007442927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009208439,"about_ca_system_score_gemma":0.0001450758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002016621,"about_ca_topic_score_gemma":0.0000999215,"domain_scores_codex":[0.9956099,0.0007276346,0.001976311,0.000507371,0.00017938,0.000999405],"domain_scores_gemma":[0.9966556,0.0002117707,0.00231926,0.0004446605,0.00005412385,0.0003146124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007657625,0.007735746,0.04558733,0.03263388,0.03618336,0.002189523,0.01003088,0.06839117,0.1099103,0.001160169,0.04908453,0.6363273],"study_design_scores_gemma":[0.000855364,0.001661753,0.0001980317,0.004217014,0.007736034,0.008452514,0.00009657029,0.00009534831,0.0003408168,0.0002779592,0.9743766,0.001691955],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05015986,0.9430435,0.001021469,0.00009109193,0.00467537,0.0006994385,0.00004043165,0.00001861625,0.0002501741],"genre_scores_gemma":[0.02232402,0.9680874,0.005852074,0.0005340867,0.001753738,0.00002271622,0.00003321906,0.0001947787,0.001197932],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9252921,"threshold_uncertainty_score":0.9997671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097860961","doi":"10.1111/j.1550-7408.2003.tb00690.x","title":"Emergence of Zoonotic Canine Leishmaniasis in the United States: Isolation and Immunohistochemical Detection of Leishmania infantum from Foxhounds from Virginia.","year":2003,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Leishmania infantum; Biology; Isolation (microbiology); Virology; Leishmania; Leishmaniasis; Visceral leishmaniasis; Microbiology; Immunology; Parasite hosting","authors":[{"name":"Alexa C. Rosypal","is_ca":false},{"name":"Gregory C. Troy","is_ca":false},{"name":"Anne M. Zajac","is_ca":false},{"name":"Robert B. Duncan","is_ca":false},{"name":"Kayoko Waki","is_ca":false},{"name":"Kwang‐Poo Chang","is_ca":false},{"name":"David S. Lindsay","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01519295460623749,"gpt":0.2682003246340359,"spread":0.2530073700277984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008673861,0.0002036097,0.0007865152,0.0004181122,0.00005409764,0.000009255664,0.0002292586,0.0001655031,0.0001642183],"category_scores_gemma":[0.0009916121,0.0001454886,0.0001325929,0.0005498965,0.0003807183,0.000111273,0.00005806577,0.0005613515,0.000002206449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000889486,"about_ca_system_score_gemma":0.0001459309,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002011615,"about_ca_topic_score_gemma":0.0003596092,"domain_scores_codex":[0.9976197,0.0004968998,0.001191962,0.0002197815,0.0001994322,0.0002721671],"domain_scores_gemma":[0.9975147,0.0008626075,0.0007762427,0.0002892752,0.0004873656,0.00006978049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007149371,0.0002435617,0.09132171,0.00006039352,0.0003331831,0.00003675819,0.002330121,0.00005158077,0.9038489,0.00002966804,0.0007697966,0.0002593624],"study_design_scores_gemma":[0.01120372,0.00545842,0.6928405,0.001060201,0.001052772,0.001469838,0.01406698,0.001319703,0.2662716,0.00214558,0.002531073,0.00057963],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948989,0.003239112,0.0007469908,0.000478274,0.0002144439,0.0002558972,0.0000488464,0.000004664741,0.0001129311],"genre_scores_gemma":[0.9968877,0.001768069,0.0009901028,0.0002042675,0.00006538019,0.000003598173,0.00005136907,0.00001735368,0.00001210954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6375773,"threshold_uncertainty_score":0.5932852,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105144710","doi":"10.1111/j.1550-7408.2008.00330.x","title":"Genetic, Morphological, and Ecological Diversity of Spatially Separated Clones of Meseres corlissi Petz & Foissner, 1992 (Ciliophora, Spirotrichea)","year":2008,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Biological dispersal; Intraspecific competition; Adaptation (eye); Ecology; Local adaptation; Genetic diversity; Biogeography; Genetic variation; Subtropics; Zoology; Gene; Genetics; Population","authors":[{"name":"Thomas Weisse","is_ca":false},{"name":"Michaela C. Strüder‐Kypke","is_ca":true},{"name":"Helmut Berger","is_ca":false},{"name":"Wilhelm Foissner","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.023621542297665,"gpt":0.2324201058248077,"spread":0.2087985635271427,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002575848,0.0002014689,0.0006845971,0.0001155964,0.0001448288,0.000003847213,0.000417024,0.0003515339,0.0000859689],"category_scores_gemma":[0.0001998437,0.0001606696,0.0002387933,0.0001382905,0.0007547793,0.000006849285,0.0005799668,0.0001876312,0.000003722275],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001480138,"about_ca_system_score_gemma":0.0001299439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006367524,"about_ca_topic_score_gemma":0.00003603441,"domain_scores_codex":[0.9985517,0.0002633773,0.0005995869,0.0002550162,0.00008441396,0.0002459304],"domain_scores_gemma":[0.9985141,0.0000788098,0.0008246634,0.0002098645,0.0002512062,0.0001213918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006540889,0.0003677928,0.3097975,0.00006836792,0.0002141578,0.0001722008,0.0000868744,0.0001088638,0.6866093,0.00001384012,0.001604898,0.0003020908],"study_design_scores_gemma":[0.004298704,0.007783981,0.8320839,0.00008787972,0.0004751072,0.01200871,0.00007024303,0.000009522594,0.1299473,0.0003019674,0.01224041,0.0006923196],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820125,0.017228,0.00026634,0.00004346127,0.0001272619,0.0001633563,0.00009462111,0.000003121521,0.00006140159],"genre_scores_gemma":[0.980103,0.0167702,0.002860363,0.0001059886,0.00007023077,7.031085e-7,0.00002828451,0.000007045498,0.00005425203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.556662,"threshold_uncertainty_score":0.6551916,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132750668","doi":"10.1111/j.1550-7408.2006.00110.x","title":"Dinoflagellate, Euglenid, or Cercomonad? The Ultrastructure and Molecular Phylogenetic Position ofProtaspis grandisn. sp.","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Deutsche Forschungsgemeinschaft; Canadian Institute for Advanced Research","keywords":"Biology; Ultrastructure; Dinoflagellate; Phylogenetic tree; Flagellum; Phylogenetics; Taxonomy (biology); Genus; Evolutionary biology; Zoology; Anatomy; Botany; Paleontology; Genetics","authors":[{"name":"Mona Hoppenrath","is_ca":true},{"name":"Brian S. Leander","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003716851351795756,"gpt":0.1923912995402524,"spread":0.1886744481884566,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002106555,0.0001740868,0.0002788336,0.000064247,0.00009202251,0.00001425701,0.0002873277,0.0002019551,0.00004045103],"category_scores_gemma":[0.00003192339,0.0001126265,0.0001504095,0.00009400598,0.0003034065,0.000004963024,0.00009341627,0.0001712327,0.000001569039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000124629,"about_ca_system_score_gemma":0.00007342616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002460297,"about_ca_topic_score_gemma":0.00002234845,"domain_scores_codex":[0.9989756,0.0001709758,0.0003848119,0.0001875514,0.00006457659,0.0002164682],"domain_scores_gemma":[0.9992197,0.00003381768,0.0003558407,0.0001962969,0.0001431216,0.00005124126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004061159,0.00005000978,0.03106938,0.00003385557,0.0001152375,0.00004722775,0.00003024846,0.0001109983,0.9661744,0.0000832205,0.001612007,0.0002672626],"study_design_scores_gemma":[0.001417422,0.001247457,0.1064357,0.00003765714,0.0001823634,0.003694593,0.00005464839,0.000003404842,0.8837064,0.001131919,0.001872398,0.0002160171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948982,0.003258628,0.0009396259,0.000305263,0.0001861628,0.0002006816,0.00007690755,0.000002135829,0.0001323998],"genre_scores_gemma":[0.9982157,0.0003430034,0.0008399377,0.000272082,0.0001920549,0.000001200164,0.00005332286,0.00001225486,0.00007046478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08246806,"threshold_uncertainty_score":0.4592774,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982797616","doi":"10.1111/j.1550-7408.2002.tb00229.x","title":"Phylogenetic Position of Licnophora, Lechriopyla, and Schizocaryum, Three Unusual Ciliates (Phylum Ciliophora) Endosymbiotic in Echinoderms (Phylum Echinodermata)","year":2002,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Phylum; Echinoderm; Zoology; Phylogenetic tree; Phylogenetics; Ciliate; Ribosomal RNA; Ecology; Paleontology; Genetics","authors":[{"name":"Denis H. Lynn","is_ca":true},{"name":"Michaela C. Strüder‐Kypke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008810578890756171,"gpt":0.1930062630590026,"spread":0.1841956841682465,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005047357,0.0003072257,0.0006916332,0.0003052941,0.00008519252,0.00002129084,0.0004064745,0.0002834153,0.0008837139],"category_scores_gemma":[0.00005539358,0.00024982,0.000180962,0.000436933,0.0004476177,0.0001659615,0.0002120835,0.0005936004,0.0000844315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001263168,"about_ca_system_score_gemma":0.00002189476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001476419,"about_ca_topic_score_gemma":0.0001448679,"domain_scores_codex":[0.997708,0.0002608402,0.001030941,0.000351565,0.0001639972,0.0004846484],"domain_scores_gemma":[0.9987446,0.0001505347,0.0006397961,0.0002738815,0.00003452536,0.000156627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001112861,0.0004063672,0.169818,0.00006327812,0.0001109149,0.0001352845,0.0005180569,0.002103358,0.8240187,0.00008116745,0.0003643668,0.002269249],"study_design_scores_gemma":[0.01062642,0.006294014,0.761795,0.0007647453,0.0006389261,0.01118879,0.0006126757,0.01656337,0.1690481,0.0200722,0.00043472,0.001961022],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926028,0.005555354,0.0001555881,0.0003560628,0.0003538741,0.0002274022,0.00002263196,0.000008881269,0.0007174145],"genre_scores_gemma":[0.9974345,0.0007997304,0.001428953,0.0001659589,0.00005772535,0.000001252537,0.000007237643,0.00002469514,0.00007993346],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6549706,"threshold_uncertainty_score":0.9999954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054417959","doi":"10.1111/j.1550-7408.2006.00233.x","title":"Phylogeny of Phagotrophic Euglenids (Euglenozoa) as Inferred from Hsp90 Gene Sequences","year":2007,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Phylogenetic tree; Phylogenetics; Molecular phylogenetics; Evolutionary biology; Nuclear gene; Clade; Internal transcribed spacer; Genetics; Gene; Mitochondrial DNA","authors":[{"name":"Susana A. Breglia","is_ca":true},{"name":"Claudio H. Slamovits","is_ca":true},{"name":"Brian S. Leander","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01005553190306205,"gpt":0.2403274582985337,"spread":0.2302719263954717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005457893,0.0002135829,0.0004485167,0.0001488568,0.00007012649,0.000009494402,0.0005754032,0.0003528653,0.0001506633],"category_scores_gemma":[0.0001604213,0.0001909407,0.0002761097,0.0001280201,0.0003482313,0.000009027358,0.0001691096,0.0002369208,0.00002398235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003133427,"about_ca_system_score_gemma":0.0002386126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006033817,"about_ca_topic_score_gemma":0.00002887014,"domain_scores_codex":[0.9984589,0.000142031,0.0006817653,0.0002606412,0.0001028961,0.0003537268],"domain_scores_gemma":[0.9985375,0.00006699032,0.0006609609,0.0002873716,0.0003081966,0.0001389976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005957827,0.000128195,0.03329637,0.00001425416,0.0003422043,0.0001069927,0.00009764748,0.00003122779,0.963994,0.00006769013,0.0006008236,0.0007247851],"study_design_scores_gemma":[0.001305016,0.001645144,0.05887735,0.00003235953,0.0001171339,0.0008776712,0.00009938866,0.000001268629,0.9317916,0.0009997205,0.004019631,0.0002336955],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929905,0.003486309,0.001976372,0.00007137701,0.0006975825,0.0001138699,0.0001255726,0.00000393246,0.0005345081],"genre_scores_gemma":[0.995247,0.000591788,0.002965353,0.0003958167,0.0005571254,4.782471e-7,0.0001015704,0.00001507654,0.0001258041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0322024,"threshold_uncertainty_score":0.7786334,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083054468","doi":"10.1111/j.1550-7408.2008.00357.x","title":"Nuclear Genome Sequence Survey of the Dinoflagellate Heterocapsa triquetra","year":2008,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Michael Smith Health Research BC; Tula Foundation","keywords":"Dinoflagellate; Biology; Genome; Pseudogene; Evolutionary biology; Sequence (biology); Genome size; Genetics; Repeated sequence; DNA sequencing; Gene; Ecology","authors":[{"name":"Michelle Louise McEwan","is_ca":true},{"name":"RAHEEL HUMAYUN","is_ca":true},{"name":"Claudio H. Slamovits","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02741807237542788,"gpt":0.2181100436268928,"spread":0.1906919712514649,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003963472,0.0001230934,0.0002745933,0.00004299858,0.0001007349,0.000003949901,0.0005936082,0.0001765734,0.00004415886],"category_scores_gemma":[0.0001081937,0.00008866969,0.000197502,0.0001092113,0.0003614129,0.000004669708,0.0001761483,0.0001946056,0.000008373176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000181109,"about_ca_system_score_gemma":0.0001369746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003668525,"about_ca_topic_score_gemma":0.00002340548,"domain_scores_codex":[0.9988928,0.0003169402,0.0003903336,0.0001473996,0.00005791524,0.0001945411],"domain_scores_gemma":[0.9989802,0.00003144872,0.0004431127,0.0002621557,0.0002256288,0.00005749451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001684244,0.00004680443,0.1212197,0.00001041575,0.00008819333,0.00001936255,0.00006280107,0.000051774,0.8764337,0.000006182762,0.001868422,0.00002421381],"study_design_scores_gemma":[0.001221557,0.001090765,0.7411152,0.00002986233,0.00005152273,0.004281472,0.00001809653,0.000003702383,0.245226,0.00005080745,0.006664783,0.0002462904],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982993,0.0007834868,0.0000814429,0.00007442067,0.0004144971,0.00009039603,0.0001260029,0.000001696994,0.0001287391],"genre_scores_gemma":[0.9985687,0.0005516284,0.0001775365,0.0003672658,0.00008030769,1.747926e-7,0.00002546717,0.00001027097,0.0002186859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6312078,"threshold_uncertainty_score":0.3615845,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147040596","doi":"10.1111/j.1550-7408.2003.tb00115.x","title":"Molecular Phylogeny of Three Oxymonad Genera: Pyrsonympha, Dinenympha and Oxymonas","year":2003,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"RIKEN; Canadian Institutes of Health Research","keywords":"Biology; Monophyly; Clade; Taxon; Phylogenetic tree; Phylogenetics; Lineage (genetic); Zoology; Genus; Evolutionary biology; Molecular phylogenetics; Ecology; Genetics; Gene","authors":[{"name":"Shigeharu Moriya","is_ca":false},{"name":"Joel B. Dacks","is_ca":true},{"name":"AIKA TAKAGI","is_ca":false},{"name":"Satoko Noda","is_ca":false},{"name":"Moriya Ohkuma","is_ca":false},{"name":"W. Ford Doolittle","is_ca":true},{"name":"Toshiaki Kudo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007465745433812251,"gpt":0.1976230964413036,"spread":0.1901573510074914,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004168668,0.0002192601,0.0004267283,0.00009901742,0.00006427932,0.000009469482,0.0003127068,0.0002544869,0.00003429284],"category_scores_gemma":[0.0001334834,0.0001990132,0.0002170867,0.0001058987,0.0002885587,0.000007222074,0.0001195576,0.0001479758,0.000003609352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001586354,"about_ca_system_score_gemma":0.0001573035,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008567008,"about_ca_topic_score_gemma":0.00001342559,"domain_scores_codex":[0.9986879,0.0001792907,0.0004897451,0.0002614584,0.00008009549,0.0003015219],"domain_scores_gemma":[0.9989094,0.0000324376,0.0004401144,0.0002637416,0.0002224448,0.0001319133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001309687,0.0001050664,0.0470372,0.0000333889,0.00024136,0.00005349013,0.00002384543,0.00006767449,0.9495435,0.0006977741,0.001713383,0.000352339],"study_design_scores_gemma":[0.002180866,0.001263272,0.02132397,0.00003321264,0.000168397,0.002599726,0.00004059132,0.000004956433,0.9560021,0.0009565922,0.01508555,0.000340768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861835,0.01011834,0.002484539,0.00007888934,0.0003467952,0.0001333053,0.00005524778,0.000002584361,0.0005968489],"genre_scores_gemma":[0.9962945,0.0005296834,0.002377218,0.0005830578,0.0001112544,0.000001229074,0.00002167516,0.00001824235,0.0000631336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02571323,"threshold_uncertainty_score":0.8115522,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999330489","doi":"10.1111/j.1550-7408.2006.00125.x","title":"Protist Genetic Diversity in the Acidic Hydrothermal Environments of Lassen Volcanic National Park, USA","year":2006,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"California State University, Chico; Independent Electricity System Operator; National Science Foundation","keywords":"Biology; Hydrothermal vent; Temperature gradient gel electrophoresis; Protist; 18S ribosomal RNA; Ecology; Microbial mat; Library; Ribosomal DNA; Mixotroph; Ribosomal RNA; Hydrothermal circulation; Botany; Zoology; 16S ribosomal RNA; Phylogenetics; Heterotroph; Gene; Bacteria; Cyanobacteria; Genetics","authors":[{"name":"Patricia Brown","is_ca":false},{"name":"Gordon V. Wolfe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01092305221217094,"gpt":0.2096734030744562,"spread":0.1987503508622853,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003833817,0.0001075858,0.0001790956,0.00006735334,0.0000736104,0.000005199422,0.0004483056,0.0001311781,0.00006517363],"category_scores_gemma":[0.00003067989,0.00008427499,0.0001163544,0.00006535439,0.0002540349,0.000004551899,0.0001855352,0.000143196,0.000009843199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003424301,"about_ca_system_score_gemma":0.00008226817,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007581582,"about_ca_topic_score_gemma":0.000191155,"domain_scores_codex":[0.9990439,0.0002101853,0.0003202545,0.0001369602,0.000111983,0.0001766896],"domain_scores_gemma":[0.999474,0.00002698313,0.0003038349,0.0001229473,0.00004737809,0.00002483702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001172951,0.0001704766,0.5012066,0.00001163186,0.00005693618,0.00002747237,0.00005034862,0.000355898,0.4959991,0.0001218581,0.001832248,0.00005009093],"study_design_scores_gemma":[0.001176423,0.0005152446,0.9500886,0.00001468244,0.00003942076,0.0005554655,0.00004470938,0.000007487089,0.04440492,0.0004484791,0.002574011,0.0001305802],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982898,0.000517397,0.0002819061,0.0001282303,0.00009848152,0.000172409,0.00004775854,5.129058e-7,0.0004635339],"genre_scores_gemma":[0.999141,0.00005660966,0.0002744149,0.0002014518,0.0001483688,0.000001417051,0.00002749894,0.000004853648,0.0001444049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4515942,"threshold_uncertainty_score":0.3436635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100642995","doi":"10.1111/jeu.12022","title":"The Mitochondrial Genome and a 60‐kb Nuclear DNA Segment from Naegleria fowleri, the Causative Agent of Primary Amoebic Meningoencephalitis","year":2013,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; Alberta Innovates","keywords":"Naegleria fowleri; Biology; Genome; Nuclear gene; Naegleria; Meningoencephalitis; Mitochondrial DNA; Genetics; Gene; Dispar; Horizontal gene transfer; Virology; Protozoa; Entamoeba histolytica","authors":[{"name":"Emily K. Herman","is_ca":true},{"name":"Alexander L. Greninger","is_ca":false},{"name":"Govinda S. Visvesvara","is_ca":false},{"name":"Francine Marciano‐Cabral","is_ca":false},{"name":"Joel B. Dacks","is_ca":true},{"name":"Charles Y. Chiu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009371959663233316,"gpt":0.2188860498499792,"spread":0.2095140901867459,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003094235,0.0001731705,0.0003161995,0.00004022935,0.000190176,0.00004959953,0.0004821535,0.000143648,0.0001185362],"category_scores_gemma":[0.00009670832,0.00009499559,0.0001504908,0.00006775864,0.0006042424,0.000010683,0.0003037819,0.0002447968,0.00001244954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004306446,"about_ca_system_score_gemma":0.000163495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000178946,"about_ca_topic_score_gemma":0.00002791738,"domain_scores_codex":[0.9984458,0.0003623864,0.0005293521,0.000222905,0.0001123303,0.0003272423],"domain_scores_gemma":[0.9987739,0.0001617602,0.0004338993,0.0002945837,0.0002331712,0.0001026794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002044069,0.00004492778,0.0003735056,0.000009160462,0.0002783891,0.00001138595,0.0004015159,0.00000936356,0.9918566,0.00002996333,0.005710434,0.001070296],"study_design_scores_gemma":[0.01123309,0.007791839,0.1579883,0.0002729554,0.000472523,0.00252941,0.005208156,0.00008714511,0.5426211,0.002279128,0.2682818,0.001234578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927929,0.004409515,0.00009362583,0.001698331,0.0004696259,0.0003081212,0.00004403537,0.000002000625,0.0001818642],"genre_scores_gemma":[0.9958864,0.002065631,0.0006023816,0.0004980323,0.0006207985,0.00000839457,0.00003008704,0.00002033267,0.0002679215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4492356,"threshold_uncertainty_score":0.3873808,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2778694919","doi":"10.1111/jeu.12495","title":"Recent Advances in Halophilic Protozoa Research","year":2017,"lang":"en","type":"review","venue":"Journal of Eukaryotic Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Protozoa; Halophile; Zoology; Microbiology; Bacteria; Paleontology","authors":[{"name":"Tommy Harding","is_ca":true},{"name":"Alastair G. B. Simpson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1691219748597325,"gpt":0.4617508043829772,"spread":0.2926288295232446,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003030714,0.0004272192,0.002700433,0.001388218,0.0003045463,0.00003706182,0.001078291,0.001210819,0.0006531133],"category_scores_gemma":[0.002938532,0.0003091719,0.0005092778,0.00034233,0.0008323995,0.0001736739,0.0002279734,0.002911818,0.0009687171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003882148,"about_ca_system_score_gemma":0.001420755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008729718,"about_ca_topic_score_gemma":0.00004473675,"domain_scores_codex":[0.9949743,0.001989035,0.001763024,0.0004005135,0.00004735097,0.0008258466],"domain_scores_gemma":[0.9952631,0.001827331,0.001619022,0.0006366543,0.0006009094,0.00005300421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005186568,0.0003638171,0.0001438442,0.001694424,0.0002720311,0.0002999718,0.00004636566,0.000001902199,0.0001170827,0.0002979842,0.006750529,0.9899602],"study_design_scores_gemma":[0.0007632668,0.0005667023,0.00003577438,0.008031953,0.0002264257,0.009042469,0.00002024322,3.407174e-8,0.00002455987,0.0003055333,0.9807177,0.0002653566],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007023277,0.9924376,0.000009550273,0.00008071121,0.003670085,0.001025872,0.0000684687,0.000008756274,0.00262871],"genre_scores_gemma":[0.00006224137,0.9986115,0.00006242841,0.00002476557,0.0002782548,0.00006298358,0.00009501049,0.00003697191,0.0007659227],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9896948,"threshold_uncertainty_score":0.999936,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073313170","doi":"10.1111/jeu.12037","title":"Biodiversity and Molecular Phylogeny of Australian Clevelandella Species (Class Armophorea, Order Clevelandellida, Family Clevelandellidae), Intestinal Endosymbiotic Ciliates in the Wood‐Feeding Roach Panesthia cribrata Saussure, 1864","year":2013,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"National Eye Institute; Commonwealth Scientific and Industrial Research Organisation","keywords":"Biology; Clade; Biodiversity; Zoology; Genetic diversity; Species complex; Phylogenetics; Taxonomy (biology); Ecology; Phylogenetic tree; Gene; Genetics; Population","authors":[{"name":"Denis H. Lynn","is_ca":true},{"name":"André‐Denis G. Wright","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01888654097180801,"gpt":0.2411083134946005,"spread":0.2222217725227925,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006275758,0.0002833277,0.0005030645,0.0001609211,0.000136462,0.00004266306,0.0005839037,0.0002414084,0.0006208484],"category_scores_gemma":[0.0001081658,0.000195758,0.0001324831,0.0003551395,0.0007018165,0.000224292,0.0001644421,0.0006425226,0.0001370297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007822014,"about_ca_system_score_gemma":0.00004364918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006643189,"about_ca_topic_score_gemma":0.0001070676,"domain_scores_codex":[0.9980353,0.0003478994,0.0007242869,0.0003108566,0.0001396315,0.0004420317],"domain_scores_gemma":[0.9986937,0.0003835233,0.0004967155,0.0002190698,0.00009350997,0.0001134795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007862358,0.000153196,0.4738794,0.00001240406,0.00006850074,0.00006644384,0.0004308912,0.0002236262,0.5176631,0.00003075099,0.007234604,0.0001585478],"study_design_scores_gemma":[0.001076725,0.0006181549,0.9791172,0.00006479387,0.0001264524,0.002788828,0.001499567,0.00006694715,0.01095258,0.0003938773,0.002990855,0.000304088],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967107,0.0003014186,0.0002340119,0.00111531,0.0002510397,0.0002358035,0.00004702489,0.000005961519,0.001098714],"genre_scores_gemma":[0.9973327,0.0001946582,0.001339881,0.0008103891,0.0000444998,0.000002357059,0.00002360315,0.000008289762,0.000243651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5067105,"threshold_uncertainty_score":0.7982778,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170348764","doi":"10.1111/j.1550-7408.2004.tb00569.x","title":"Symbiotic Innovation in the Oxymonad Streblomastix strix","year":2004,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Bacteria; Hindgut; Ultrastructure; Cell; Bacterial cell structure; Microbiology; Anatomy; Zoology; Cell biology; Ecology; Midgut; Genetics; Larva","authors":[{"name":"Brian S. Leander","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009736026407460782,"gpt":0.2397002739680092,"spread":0.2299642475605485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005271276,0.0001147063,0.0001723621,0.0001309542,0.00006102247,0.000009748434,0.0002815741,0.0002043017,0.00002091061],"category_scores_gemma":[0.00009137231,0.00007713579,0.00008009124,0.0002240033,0.0001163185,0.000006170901,0.00003365831,0.0002671066,0.000009579648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002278741,"about_ca_system_score_gemma":0.0001532884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000563653,"about_ca_topic_score_gemma":0.00006400108,"domain_scores_codex":[0.9990312,0.00009730688,0.0004926502,0.0001232903,0.00003943663,0.0002161405],"domain_scores_gemma":[0.9994396,0.00002216893,0.000268963,0.0001397346,0.0001103786,0.00001915656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000997215,0.0002107719,0.02033801,0.000006097696,0.0000234207,0.0000673334,0.00009306728,0.0001324311,0.9772573,0.0005742339,0.0009203091,0.0002772793],"study_design_scores_gemma":[0.006780035,0.004804248,0.1363423,0.0001005649,0.0001485002,0.01017976,0.0008614068,0.000001693052,0.8301108,0.002561733,0.00754628,0.0005627122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979714,0.000360147,0.0002541046,0.0007586451,0.0004090058,0.00009457307,0.000005795776,0.000001835915,0.0001445112],"genre_scores_gemma":[0.9980722,0.00005580176,0.0003114148,0.001192108,0.000257314,0.000001721152,0.00004330878,0.000006811756,0.00005931742],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1471465,"threshold_uncertainty_score":0.3145506,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103898992","doi":"10.1111/jeu.12182","title":"Sarcocystis caninum and Sarcocystis svanai n. spp. (Apicomplexa: Sarcocystidae) Associated with Severe Myositis and Hepatitis in the Domestic Dog (Canis familiaris)","year":2014,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"European Social Fund; National Institute of Allergy and Infectious Diseases; University of California, San Diego; National Institutes of Health; U.S. Department of Agriculture; Junta de Extremadura; Canadian Institute for Advanced Research","keywords":"Sarcocystis; Myositis; Apicomplexa; Virology; Sarcocystosis; Biology; Canis; Pathology; Veterinary medicine; Medicine; Parasite hosting; Immunology; Anatomy; Protozoal disease; Ecology","authors":[{"name":"J. P. Dubey","is_ca":false},{"name":"Jane E. Sykes","is_ca":false},{"name":"G. Diane Shelton","is_ca":false},{"name":"N J Sharp","is_ca":false},{"name":"Shiv K. Verma","is_ca":false},{"name":"Rafael Calero‐Bernal","is_ca":false},{"name":"Jenifer Viviano","is_ca":false},{"name":"N. Sundar","is_ca":false},{"name":"Asis Khan","is_ca":false},{"name":"Michael E. Grigg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007390190602301239,"gpt":0.2357627100461076,"spread":0.2283725194438064,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001759292,0.0005267725,0.001253606,0.0003819976,0.0004169945,0.00007309184,0.0006307704,0.0004334592,0.0001311197],"category_scores_gemma":[0.001001384,0.0003456213,0.0001210503,0.0004370009,0.001569102,0.0002071467,0.0003062569,0.001417599,0.00003438506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001960969,"about_ca_system_score_gemma":0.0002218902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001254959,"about_ca_topic_score_gemma":0.003667375,"domain_scores_codex":[0.99552,0.001826914,0.0009902471,0.0005396455,0.0001271131,0.0009960979],"domain_scores_gemma":[0.9954793,0.003029351,0.0006918567,0.0003748013,0.0003131701,0.0001114489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001048358,0.0006634422,0.6313282,0.0002716549,0.00212758,0.00161543,0.003623559,0.0000746337,0.3081257,0.001300648,0.04338266,0.006438058],"study_design_scores_gemma":[0.01035045,0.004130978,0.9260746,0.000661441,0.0004543602,0.03178864,0.0007802781,0.00001504067,0.002017197,0.001147553,0.02174282,0.000836622],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860316,0.00970336,0.0001860916,0.001978358,0.0005285058,0.0004892726,0.0002156637,0.00002925858,0.000837907],"genre_scores_gemma":[0.9959893,0.001701314,0.0003531455,0.001206953,0.00009515614,0.00001679664,0.00006003372,0.00004118116,0.0005360927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3061085,"threshold_uncertainty_score":0.9998996,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}