{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":78,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":78,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"5f9dd093cdb9","filters":{"venue":"Journal of Innate Immunity"}},"results":[{"id":"W2144072179","doi":"10.1159/000355628","title":"Long-Lasting Effects of BCG Vaccination on Both Heterologous Th1/Th17 Responses and Innate Trained Immunity","year":2013,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":627,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Research Foundation; National Institutes of Health; Danmarks Grundforskningsfond; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Innate immune system; Heterologous; Vaccination; Immunity; Immunology; BCG vaccine; Biology; Medicine; Virology; Immune system; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01250263014315202,"gpt":0.2607547885865224,"spread":0.2482521584433704,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001523932,0.0002826545,0.0006196608,0.0006611202,0.0004531805,0.00004878832,0.0004389423,0.0003085042,0.0002178795],"category_scores_gemma":[0.002331686,0.0002259465,0.0002000094,0.0002556943,0.0001398739,0.0004386887,0.0001716838,0.001189125,0.00002829481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008690201,"about_ca_system_score_gemma":0.0001171543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003088839,"about_ca_topic_score_gemma":0.00001555349,"domain_scores_codex":[0.9964442,0.001978813,0.0009457893,0.0001509422,0.0001027092,0.0003775871],"domain_scores_gemma":[0.9955862,0.002294777,0.001097348,0.0003880348,0.0005880806,0.00004553135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003488512,0.0008928166,0.005668685,0.0001980685,0.000681024,0.00003207372,0.002474892,0.00003185402,0.9341002,0.0002426549,0.0005446553,0.05164461],"study_design_scores_gemma":[0.003820635,0.002711838,0.7908008,0.0002626244,0.00009644049,0.0005070854,0.0003939768,0.00002496501,0.2004929,0.0003726618,0.0003082948,0.0002078439],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944452,0.003539694,0.0001786311,0.0005793766,0.0006350867,0.0003537862,0.00001042655,0.00002764091,0.0002301432],"genre_scores_gemma":[0.9985783,0.0005691074,0.0001083278,0.0001549703,0.00002629107,0.00001100646,0.00001449912,0.00002544122,0.00051203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7851321,"threshold_uncertainty_score":0.921383,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993799354","doi":"10.1159/000163037","title":"Role of Intestinal Mucins in Innate Host Defense Mechanisms against Pathogens","year":2008,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":322,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Mucin; Mucus; Biology; Innate immune system; Effector; Secretion; Host (biology); Microbiology; Cell biology; Immunology; Genetics; Immune system; Biochemistry; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.03399476364795063,"gpt":0.2977318625181083,"spread":0.2637370988701577,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001348167,0.0007210121,0.004307501,0.001648968,0.0001111675,0.00001233234,0.0006137397,0.0006010412,0.00002041742],"category_scores_gemma":[0.00166926,0.0005529263,0.001041268,0.001041878,0.0003303818,0.0001564633,0.0003843093,0.004397347,0.00002130388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000522254,"about_ca_system_score_gemma":0.0008092427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005927475,"about_ca_topic_score_gemma":0.00003267168,"domain_scores_codex":[0.9943878,0.000997321,0.00315887,0.0002829971,0.0005522547,0.0006207754],"domain_scores_gemma":[0.9945276,0.0003378162,0.003103007,0.0006582499,0.001123487,0.000249828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001708845,0.004186214,0.009776472,0.01273259,0.008347435,0.008684457,0.004639064,0.00001264655,0.007018041,0.00008594069,0.0007012603,0.942107],"study_design_scores_gemma":[0.01533738,0.0139452,0.04643565,0.2285711,0.009365615,0.07861532,0.00272867,0.00003705789,0.001117494,0.0003940908,0.6011289,0.002323463],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0956478,0.9026716,0.0000301752,0.0001251639,0.000412257,0.0005439377,0.00006824105,0.00002319844,0.0004776063],"genre_scores_gemma":[0.01173672,0.9864089,0.001341678,0.0002133885,0.0001227997,0.00001282398,0.00004054596,0.00009306725,0.00003007968],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9397836,"threshold_uncertainty_score":0.9996922,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141774394","doi":"10.1159/000347132","title":"Damage-Associated Molecular Patterns Control Neutrophil Recruitment","year":2013,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":242,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Fondation pour la Recherche Médicale; Canadian Institutes of Health Research; Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Innate immune system; Neutrophil extracellular traps; Inflammation; Cell biology; Damp; Biology; Inflammatory response; Immune system; Extracellular; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.05686916729478553,"gpt":0.3209535159684124,"spread":0.2640843486736268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001696326,0.0005419789,0.002415312,0.000564864,0.0002051243,0.0000673218,0.0008940897,0.0009279588,0.0006235484],"category_scores_gemma":[0.0004479365,0.0003965617,0.001142407,0.0002539105,0.0001109284,0.0002688336,0.0001492011,0.002443051,0.0005037489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000381442,"about_ca_system_score_gemma":0.0004507428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008148775,"about_ca_topic_score_gemma":0.000002183584,"domain_scores_codex":[0.9933575,0.003862727,0.002017896,0.000176517,0.0001174248,0.000467911],"domain_scores_gemma":[0.9950271,0.0004322713,0.003362249,0.0005849001,0.0005482727,0.00004524557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002371669,0.000622744,0.00001362982,0.002178567,0.007260094,0.0002215963,0.0002847101,0.000005980087,0.01665128,0.00008743158,0.003664587,0.9687722],"study_design_scores_gemma":[0.002186516,0.0006566445,0.0001410491,0.008246336,0.001755103,0.0005669314,0.00006316909,6.572592e-7,0.002101116,0.00003195482,0.9838001,0.000450398],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01376681,0.9827453,0.00005963201,0.0001129186,0.002049992,0.001021537,0.00004966958,0.00002612967,0.0001679633],"genre_scores_gemma":[0.005596057,0.9929799,0.00001059098,0.00009202123,0.0000548285,0.00006432128,0.0002492948,0.00006102906,0.0008919023],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9801356,"threshold_uncertainty_score":0.9998584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093577301","doi":"10.1159/000336630","title":"Cationic Host Defence Peptides: Multifaceted Role in Immune Modulation and Inflammation","year":2012,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":237,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Innate immune system; Effector; Immune system; Acquired immune system; Inflammation; Immunity; Biology; Antimicrobial peptides; Immunology; Antimicrobial; Microbiology","retraction":null,"screen_n_in":null,"score":{"opus":0.02749369135838685,"gpt":0.278165727280658,"spread":0.2506720359222712,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009988141,0.0003088991,0.001182043,0.0004752471,0.0001754953,0.00004374738,0.0002829757,0.0004861775,0.00006309522],"category_scores_gemma":[0.0001595051,0.0002530952,0.0002534345,0.0002379709,0.0001770925,0.0006028638,0.0001286135,0.001305943,0.00005063141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001805695,"about_ca_system_score_gemma":0.000179188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003379093,"about_ca_topic_score_gemma":0.00003914529,"domain_scores_codex":[0.9976618,0.0006412306,0.001236878,0.0001257815,0.00005008132,0.0002842195],"domain_scores_gemma":[0.9975699,0.0002438483,0.00175125,0.0002383151,0.0001722834,0.00002440851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006431883,0.0001472429,0.0002074026,0.001991291,0.000334388,0.000003605456,0.001447711,0.00002127758,0.04043581,0.00008347834,0.00002318407,0.9552403],"study_design_scores_gemma":[0.004065403,0.000609558,0.03182088,0.03921451,0.002169781,0.003036211,0.00288536,0.00004801384,0.008727949,0.0003196464,0.9050805,0.002022165],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.08719326,0.911982,0.00002923849,0.00002026881,0.000376354,0.0002744271,0.00001833268,0.00001060336,0.0000954877],"genre_scores_gemma":[0.2596652,0.7399254,0.0001071833,0.00000450009,0.00005323673,0.000005282112,0.00008636868,0.00002097069,0.0001317868],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9532181,"threshold_uncertainty_score":0.9999921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2735693033","doi":"10.1159/000477419","title":"Update of Sepsis in the Intensive Care Unit","year":2017,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Sepsis; Medicine; Intensive care medicine; Septic shock; Intensive care unit; Organ dysfunction; Incidence (geometry); Randomized controlled trial; Systemic inflammatory response syndrome; Intensive care; Acute kidney injury; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.3205428605767729,"gpt":0.4750354849132052,"spread":0.1544926243364323,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009010517,0.000299722,0.002386299,0.0004391774,0.00009098781,0.00003299067,0.000681407,0.0002140748,0.00005992656],"category_scores_gemma":[0.0009909604,0.0001503289,0.0009838532,0.0002336278,0.0001241464,0.00008328365,0.0001083367,0.001382476,0.00001374538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001883565,"about_ca_system_score_gemma":0.0005432168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000192299,"about_ca_topic_score_gemma":0.00003291548,"domain_scores_codex":[0.9976352,0.0005285466,0.001177243,0.0001008946,0.0003795677,0.0001784887],"domain_scores_gemma":[0.9947961,0.0003874276,0.002293933,0.0008632469,0.001590751,0.00006857327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006395303,0.0003820539,0.001951205,0.006257323,0.001361843,0.0007017518,0.002313571,3.611983e-7,4.835464e-7,0.00002870405,0.001521289,0.9854175],"study_design_scores_gemma":[0.001136297,0.000595454,0.006539262,0.04229874,0.00331981,0.0008762435,0.004687857,1.375774e-7,0.00001816515,0.00002719394,0.9403697,0.0001311354],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007328701,0.9904854,2.548701e-7,0.000465114,0.0002663053,0.000428948,0.00003454333,0.000002223936,0.0009885213],"genre_scores_gemma":[0.01566128,0.9837528,0.00004376878,0.0003436873,0.00009239722,0.00001187176,0.00004562708,0.00002567068,0.00002286224],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9852864,"threshold_uncertainty_score":0.6130233,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2238462784","doi":"10.1159/000442976","title":"Increased Plasma PCSK9 Levels Are Associated with Reduced Endotoxin Clearance and the Development of Acute Organ Failures during Sepsis","year":2016,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Lipoproteins and Cardiovascular Health","field":"Medicine","cited_by":158,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; National Sanitarium Association","keywords":"Sepsis; PCSK9; Medicine; Internal medicine; Immune system; Immunology; Lipoprotein; LDL receptor; Cholesterol","retraction":null,"screen_n_in":null,"score":{"opus":0.03025448083008863,"gpt":0.2933281858968254,"spread":0.2630737050667367,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003387569,0.0003870105,0.003002928,0.0002638966,0.0002651958,0.00003013902,0.0003293084,0.0002562126,0.00002518629],"category_scores_gemma":[0.0006188993,0.0001781364,0.0006179537,0.000383158,0.0002157348,0.0001089021,0.0001279842,0.00124029,0.00000206581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003733793,"about_ca_system_score_gemma":0.001574026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005452392,"about_ca_topic_score_gemma":0.00001939835,"domain_scores_codex":[0.9962324,0.001077235,0.001431156,0.0001717432,0.0007853487,0.0003021476],"domain_scores_gemma":[0.9956897,0.0002250476,0.002778868,0.0005280724,0.000600267,0.0001780068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.002929422,0.0003629757,0.0002017716,0.01845634,0.03115046,0.0003808122,0.001817916,3.586968e-7,0.001233784,0.00001219976,0.00004932333,0.9434046],"study_design_scores_gemma":[0.05698242,0.001357328,0.1311066,0.5592121,0.02196685,0.0110347,0.001031541,0.000002912727,0.02743718,0.00003545798,0.1880277,0.001805214],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.4111983,0.5876307,0.00001394635,0.0001574417,0.00007545182,0.0008046574,0.00004374716,0.00001158237,0.00006413796],"genre_scores_gemma":[0.1622431,0.8369749,0.0004612322,0.00002627151,0.0001227498,0.00002108714,0.000008345944,0.00006112097,0.00008129893],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9415994,"threshold_uncertainty_score":0.7264193,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2771382062","doi":"10.1159/000484257","title":"Kallikrein Cleaves C3 and Activates Complement","year":2017,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":145,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Nutrasource","funders":"Leibniz-Gemeinschaft; Deutsche Forschungsgemeinschaft","keywords":"Kallikrein; Complement system; Plasmin; Classical complement pathway; Alternative complement pathway; Factor XII; Chemistry; Factor H; Proteolysis; Cell biology; Complement factor B; Biochemistry; Contact system; Activator (genetics); Biology; Immune system; Coagulation; Immunology; Enzyme; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.03733437031904928,"gpt":0.3112886793221463,"spread":0.273954309003097,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006676018,0.0001348633,0.0003251192,0.0001021941,0.0007388683,0.0000922196,0.0006131852,0.00006193005,0.0005524135],"category_scores_gemma":[0.0002926202,0.0001067532,0.00009709166,0.00002126214,0.0002619284,0.0002856612,0.0003441354,0.0003446426,0.00003168627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004093344,"about_ca_system_score_gemma":0.0000481185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002032411,"about_ca_topic_score_gemma":0.00002257667,"domain_scores_codex":[0.9988915,0.0002701127,0.0004843995,0.00008690438,0.00005641023,0.0002106831],"domain_scores_gemma":[0.9982879,0.0001592321,0.0009065214,0.0004458087,0.0001654707,0.00003510468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009352099,0.0005995253,0.1734461,0.0001180604,0.001371719,0.00004505018,0.001145611,0.00000406556,0.7784408,0.002378915,0.01732612,0.02418884],"study_design_scores_gemma":[0.002467143,0.0004093071,0.8648671,0.000239378,0.00008199454,0.0002364066,0.001074297,0.000001843118,0.09108504,0.0009431149,0.03841648,0.0001778992],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950621,0.002087905,0.00002454896,0.0006739856,0.0006290138,0.0001130587,0.00002455409,0.00001067235,0.001374161],"genre_scores_gemma":[0.9993751,0.0001874638,0.00008933156,0.00006236577,0.0000443216,0.00000198146,0.000006872951,0.000009199417,0.0002233599],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.691421,"threshold_uncertainty_score":0.604854,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3162005964","doi":"10.1159/000515740","title":"Intracellular and Extracellular Lipopolysaccharide Signaling in Sepsis: Avenues for Novel Therapeutic Strategies","year":2021,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Toronto Public Health","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China","keywords":"Pyroptosis; Cell biology; Inflammasome; Pyrin domain; Caspase; TLR4; Biology; Extracellular; Inflammation; Intracellular; Lipopolysaccharide; Signal transduction; Immunology; Apoptosis; Programmed cell death; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03574582573761129,"gpt":0.3194818008375546,"spread":0.2837359750999433,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001032179,0.0003419815,0.001079467,0.0001962744,0.00009378041,0.0001160449,0.0003660211,0.0004062066,0.00001377588],"category_scores_gemma":[0.0001462225,0.0002967946,0.0005047914,0.0001124546,0.00008548214,0.00002101734,0.0001093315,0.0006756104,7.572676e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003229238,"about_ca_system_score_gemma":0.0005558619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001468419,"about_ca_topic_score_gemma":0.000006472684,"domain_scores_codex":[0.9981617,0.0002381671,0.000989605,0.0002016975,0.0001307499,0.0002780488],"domain_scores_gemma":[0.9985141,0.00007561252,0.000836905,0.0002991681,0.0002262057,0.00004797452],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009701842,0.0003436378,0.00001427612,0.005957277,0.001450194,0.00005119096,0.0004741569,0.00006959473,0.3805267,0.0003386845,0.00005766137,0.6106196],"study_design_scores_gemma":[0.001113959,0.0004915388,0.000006689902,0.007391097,0.0007025281,0.0002381188,0.002117173,0.00001364049,0.02323099,0.000206543,0.9638964,0.0005913015],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01896535,0.9794857,0.0009995599,0.00001878452,0.0002189765,0.0002726595,0.00001858155,0.000002378351,0.00001799064],"genre_scores_gemma":[0.01035305,0.9888259,0.0004079123,0.00002571945,0.0001755145,0.00001885817,0.00008731012,0.00005148158,0.00005425562],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9638388,"threshold_uncertainty_score":0.9999484,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2888245554","doi":"10.1159/000491497","title":"Design and Assessment of Anti-Biofilm Peptides: Steps Toward Clinical Application","year":2018,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biofilm; Antibiotics; Antimicrobial peptides; Microbiology; Medicine; Computational biology; Biology; Antimicrobial; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.09704819856504564,"gpt":0.3912825309434093,"spread":0.2942343323783636,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003135141,0.0003565201,0.00242366,0.0002630492,0.0001481559,0.00003016884,0.000560877,0.0006926458,0.00006131142],"category_scores_gemma":[0.000138135,0.0002572613,0.0006255022,0.0001605967,0.0007626025,0.0001777466,0.0002343394,0.001724306,0.00002159331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006802044,"about_ca_system_score_gemma":0.0005853478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004339984,"about_ca_topic_score_gemma":8.573577e-7,"domain_scores_codex":[0.9958123,0.001632783,0.002028033,0.0002085851,0.00006744197,0.000250857],"domain_scores_gemma":[0.994975,0.000814674,0.003427431,0.0003781948,0.0003673307,0.00003733689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001312218,0.0007865319,0.0001846655,0.006013822,0.002720281,0.00001073243,0.0002247876,0.0000022106,0.004874508,0.0001849063,0.006071757,0.9787946],"study_design_scores_gemma":[0.001077202,0.001610408,0.0007428314,0.009586103,0.001665493,0.0009555523,0.0002696562,0.000004526653,0.001094932,0.00009829881,0.982417,0.0004779705],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00397704,0.9896558,0.004840137,0.00002978512,0.0007586154,0.0004890831,0.00004442531,0.00001195006,0.0001931747],"genre_scores_gemma":[0.008756058,0.9869527,0.003929351,0.00002821291,0.0001219405,0.000005110579,0.00004257824,0.00003183863,0.0001321732],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9783166,"threshold_uncertainty_score":0.999988,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015129508","doi":"10.1159/000334247","title":"Nucleotide-Binding Oligomerization Domain-Like Receptors and Inflammasomes in the Pathogenesis of Non-Microbial Inflammation and Diseases","year":2011,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Inflammasome; Pyrin domain; Proinflammatory cytokine; Pathogenesis; Immunology; Inflammation; Biology; Innate immune system; Immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.01193189228920245,"gpt":0.2545630840016184,"spread":0.242631191712416,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007631973,0.0002677809,0.0007063503,0.0002986615,0.0001026329,0.00003892167,0.0003251019,0.0002439276,0.00000613054],"category_scores_gemma":[0.0001442807,0.0001901299,0.0002246769,0.0002295792,0.0001638103,0.00003096373,0.0001501122,0.0003060795,7.061783e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001974355,"about_ca_system_score_gemma":0.0001605228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001853535,"about_ca_topic_score_gemma":0.00001165479,"domain_scores_codex":[0.9981681,0.0004648104,0.0009417517,0.0001372669,0.0001191665,0.0001689415],"domain_scores_gemma":[0.9982893,0.0000507313,0.001227505,0.0002571134,0.0001367179,0.00003863581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002120916,0.0001248109,0.001706079,0.004203129,0.0004426991,0.00001077165,0.00198045,0.000003233685,0.08133618,0.00003497921,0.0001051233,0.9098405],"study_design_scores_gemma":[0.002375629,0.00106875,0.01480465,0.008353505,0.001238983,0.0003430406,0.002728545,0.000002051062,0.005448145,0.0001595574,0.9624695,0.001007701],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.4769918,0.5225165,0.00001937331,0.000009423171,0.000182057,0.0002231588,0.00001233447,0.000001152605,0.00004411045],"genre_scores_gemma":[0.02237999,0.9772224,0.0001152904,0.00001112904,0.00009877902,0.000007938928,0.0001216558,0.00002733762,0.00001551669],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9623643,"threshold_uncertainty_score":0.7753273,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2242155555","doi":"10.1159/000439275","title":"Alveolar Epithelial Cells in &lt;b&gt;&lt;i&gt;Mycobacterium tuberculosis&lt;/i&gt;&lt;/b&gt; Infection: Active Players or Innocent Bystanders?","year":2015,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute","keywords":"Immunology; Mycobacterium tuberculosis; Tuberculosis; Immune system; Context (archaeology); Biology; Secretion; Medicine; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.05684140273280518,"gpt":0.3545142225964993,"spread":0.2976728198636941,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.01046425,0.001788688,0.007901947,0.002992513,0.0004544422,0.0001812517,0.001414908,0.002241587,0.001048591],"category_scores_gemma":[0.005573862,0.001288152,0.002359445,0.002591752,0.0007293292,0.001002656,0.0007915317,0.007596556,0.0003361329],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005047001,"about_ca_system_score_gemma":0.005306968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002297839,"about_ca_topic_score_gemma":0.0006678394,"domain_scores_codex":[0.9835081,0.006080437,0.005036902,0.0009791848,0.002151449,0.002243987],"domain_scores_gemma":[0.988313,0.001990162,0.003668613,0.001678115,0.0025834,0.001766733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01665406,0.007137249,0.0006118136,0.03007158,0.01727095,0.006169347,0.002993756,0.0001395753,0.05437897,0.000451473,0.178741,0.6853802],"study_design_scores_gemma":[0.004956394,0.003214861,0.002745964,0.01224056,0.002010283,0.003783391,0.0001003136,0.00003856239,0.0005326935,0.00008283406,0.969173,0.001121217],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.062658,0.924001,0.00008234033,0.0015013,0.004185374,0.002816177,0.000650092,0.0001126484,0.003993066],"genre_scores_gemma":[0.01065348,0.984978,0.000244985,0.000580041,0.002029361,0.0001131103,0.0003411895,0.0002597744,0.0008000619],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7904319,"threshold_uncertainty_score":0.9998646,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088655043","doi":"10.1159/000341630","title":"Bacterial Stimulation of the TLR-MyD88 Pathway Modulates the Homeostatic Expression of Ileal Paneth Cell α-Defensins","year":2012,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Institute of Nutrition, Metabolism and Diabetes; Canadian Institutes of Health Research; CH.I.L.D. Foundation; Michael Smith Health Research BC; Genome British Columbia; Child and Family Research Institute; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; Natural Sciences and Engineering Research Council of Canada; Université de Sherbrooke","keywords":"Paneth cell; Biology; Microbiology; Gene expression; Cell biology; Gene; Biochemistry; Small intestine","retraction":null,"screen_n_in":null,"score":{"opus":0.01449204401356369,"gpt":0.2210331881405517,"spread":0.206541144126988,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000693396,0.0001302404,0.000330532,0.000065944,0.0002069129,0.000009766164,0.0003173928,0.0001361607,0.0001634887],"category_scores_gemma":[0.000111834,0.00006717802,0.0001925368,0.0000994127,0.0003396882,0.0002492981,0.0001417081,0.0004994387,0.000004972126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000225315,"about_ca_system_score_gemma":0.00006784745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001453517,"about_ca_topic_score_gemma":0.00000432054,"domain_scores_codex":[0.9984751,0.0006220706,0.0005776703,0.00004924209,0.00006824829,0.0002076107],"domain_scores_gemma":[0.9980908,0.0003220341,0.001121672,0.000256708,0.0001933043,0.00001546569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003075292,0.0002392628,0.002993093,0.00003459585,0.00005673682,2.558896e-7,0.002721591,0.0001749093,0.9921521,0.00003815546,0.000465754,0.0008160295],"study_design_scores_gemma":[0.0007319023,0.0001781257,0.08303359,0.0001454359,0.00005185663,0.00004154196,0.00118048,0.000004785547,0.9136438,0.0000947695,0.00082091,0.00007284518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975688,0.000881359,0.00005371965,0.00008942487,0.00108949,0.0001126473,0.00004377738,0.00000390484,0.0001568854],"genre_scores_gemma":[0.9995221,0.0001048671,0.00009798593,0.00003409786,0.00007204471,4.10575e-7,0.000009970893,0.00001091753,0.0001476444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0800405,"threshold_uncertainty_score":0.273944,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088769720","doi":"10.1159/000368233","title":"Myeloid-Derived Suppressor Cells: Paradoxical Roles in Infection and Immunity","year":2014,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute on Aging; National Institutes of Health","keywords":"Myelopoiesis; Myeloid-derived Suppressor Cell; Immune system; Immunology; Biology; Suppressor; Myeloid; Inflammation; Population; Immunity; Disease; Haematopoiesis; Medicine; Stem cell; Cell biology; Cancer; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02498773209088031,"gpt":0.3046106179311843,"spread":0.279622885840304,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.002654015,0.0006261687,0.002958504,0.0007585977,0.0002547808,0.00005948239,0.0007978191,0.001307211,0.0002472455],"category_scores_gemma":[0.0004380451,0.0004988042,0.000639463,0.0003648851,0.0005439721,0.0002514207,0.0004579378,0.005086485,0.00009730374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003185587,"about_ca_system_score_gemma":0.000370548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003654577,"about_ca_topic_score_gemma":0.00006171659,"domain_scores_codex":[0.9934356,0.003616886,0.002050621,0.0002661619,0.0001016743,0.0005290742],"domain_scores_gemma":[0.9960104,0.0009782524,0.002059077,0.0006741025,0.0002268195,0.00005131346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003764122,0.0006750759,0.0001106121,0.007023363,0.001353873,0.00005477176,0.0008470046,0.00001026427,0.02169815,0.00004862705,0.00142763,0.9663742],"study_design_scores_gemma":[0.001629659,0.0004252521,0.0007224635,0.009014004,0.0006268651,0.001205586,0.00008067153,9.136275e-7,0.007351414,0.0001024737,0.9782912,0.0005495313],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03261808,0.9640707,0.00002844973,0.00002796102,0.002570344,0.0003556887,0.000023209,0.00002252951,0.000283087],"genre_scores_gemma":[0.01643991,0.9830208,0.00006365394,0.00004357663,0.000103186,0.00001849064,0.00005471152,0.00006425567,0.0001913691],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9768636,"threshold_uncertainty_score":0.9999893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2898757292","doi":"10.1159/000493719","title":"Dynamics of Structural Barriers and Innate Immune Components during Incubation of the Avian Egg: Critical Interplay between Autonomous Embryonic Development and Maternal Anticipation","year":2018,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Reproductive System and Pregnancy","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; University of Ottawa","funders":"","keywords":"Biology; Innate immune system; Yolk; Cell biology; Embryogenesis; Embryo; Incubation; Vitelline membrane; Immunology; Immune system; Oocyte; Ecology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02460752161488639,"gpt":0.3190456987625946,"spread":0.2944381771477083,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001109493,0.0002899124,0.001375884,0.0002870183,0.0002737495,0.00002315346,0.0004348533,0.0003366381,0.00002588877],"category_scores_gemma":[0.0003265955,0.0001941182,0.0001935945,0.0001457904,0.0006135321,0.0001888131,0.0003700205,0.0007968109,0.000001580595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000178945,"about_ca_system_score_gemma":0.0002352028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006820223,"about_ca_topic_score_gemma":0.0000100285,"domain_scores_codex":[0.9967063,0.001150173,0.001648476,0.0001803679,0.00009747505,0.0002171753],"domain_scores_gemma":[0.9969325,0.0001647769,0.002166214,0.0003147185,0.0003851585,0.00003663643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.000805698,0.0002549029,0.3633054,0.0786477,0.01101878,0.00002935254,0.01778441,0.000005015616,0.01995447,0.001191972,0.00001281751,0.5069895],"study_design_scores_gemma":[0.001476386,0.000459197,0.9401779,0.03828967,0.001187964,0.001664885,0.0003810829,0.000004152922,0.01389235,0.0004987025,0.001458615,0.0005091117],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5750315,0.4241133,0.0000145482,0.00001852339,0.0005896346,0.0001739192,0.00004351481,0.000002825358,0.0000122676],"genre_scores_gemma":[0.9015655,0.09823474,0.00006551421,0.000001260544,0.00003434433,0.000002762995,0.00004126546,0.00001922442,0.00003537547],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5768725,"threshold_uncertainty_score":0.7915911,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025854398","doi":"10.1159/000235563","title":"NOX4 Expression in Human Microglia Leads to Constitutive Generation of Reactive Oxygen Species and to Constitutive IL-6 Expression","year":2009,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":78,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Chinese Academy of Agricultural Sciences; Gebert Rüf Stiftung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"NOX4; Microglia; NADPH oxidase; Cell biology; Biology; Reactive oxygen species; Neuroinflammation; NOX1; Molecular biology; Immunology; Inflammation","retraction":null,"screen_n_in":null,"score":{"opus":0.05855251671030148,"gpt":0.3030171154473158,"spread":0.2444645987370143,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004689658,0.0001799648,0.0003297268,0.0005159877,0.000268805,0.00007249463,0.0002442528,0.00007224659,0.00002588634],"category_scores_gemma":[0.0008720127,0.0001574241,0.00005792703,0.0003618949,0.0001316911,0.000594695,0.00009389526,0.0003885415,0.000004487701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007653514,"about_ca_system_score_gemma":0.00009951155,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005059625,"about_ca_topic_score_gemma":0.000008954985,"domain_scores_codex":[0.9980599,0.0004682417,0.0007081874,0.0002286866,0.0003553063,0.0001797293],"domain_scores_gemma":[0.998731,0.0001228914,0.0005095663,0.0002101439,0.0002763775,0.0001500209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002250436,0.000131124,0.00006925393,0.000005011825,0.000001551969,0.00003655855,0.001760531,0.0004031435,0.994026,0.002687537,0.0003373528,0.0003168644],"study_design_scores_gemma":[0.0007313048,0.0006189233,0.003673046,0.0001769384,0.000005920353,0.00006596998,0.0002261627,0.00003379896,0.9935251,0.0002935377,0.0005069328,0.0001424048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955837,0.00001678134,0.001944373,0.0006186306,0.0002757881,0.0003518312,0.00002471339,0.00001288552,0.001171297],"genre_scores_gemma":[0.9972841,0.00005099431,0.001464667,0.001006814,0.00007497108,0.000003139356,0.000002412388,0.000007770283,0.0001051087],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003603792,"threshold_uncertainty_score":0.6419568,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981730684","doi":"10.1159/000353694","title":"Leukotriene B&lt;sub&gt;4&lt;/sub&gt;, an Endogenous Stimulator of the Innate Immune Response against Pathogens","year":2013,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Innate immune system; Endogeny; Immune system; Immunology; Leukotriene; Biology; Chemistry; Microbiology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03951466421878151,"gpt":0.2760683833013318,"spread":0.2365537190825503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.007135225,0.001047386,0.003515431,0.001157763,0.0007789588,0.00009245297,0.00267083,0.001561217,0.0001946999],"category_scores_gemma":[0.0023409,0.0007034221,0.002018432,0.001044634,0.0006927309,0.00056107,0.0007640633,0.003290806,0.0003083727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005018758,"about_ca_system_score_gemma":0.002268138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003684308,"about_ca_topic_score_gemma":0.000005461453,"domain_scores_codex":[0.9834593,0.0106741,0.004217932,0.0004082218,0.0003478073,0.0008926241],"domain_scores_gemma":[0.9886159,0.001270014,0.006368537,0.002170957,0.001465792,0.0001088382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001729988,0.0003980971,0.000002971605,0.0009017095,0.001345151,0.00005019485,0.0006343514,0.00002621926,0.7463207,0.00003048896,0.0004255222,0.2481346],"study_design_scores_gemma":[0.002520016,0.00136918,0.0008737221,0.007136348,0.001392617,0.002698251,0.0001510758,0.000004149821,0.2146079,0.00003787101,0.7683313,0.0008775964],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.413424,0.5839978,0.00000978654,0.00004297493,0.001507868,0.0007963877,0.00009566485,0.00002543613,0.0001000537],"genre_scores_gemma":[0.07333584,0.9255143,0.00004754876,0.00007550052,0.0001411971,0.00004015325,0.0002081534,0.0001478911,0.0004894329],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7679058,"threshold_uncertainty_score":0.9997349,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963690783","doi":"10.1159/000318531","title":"Vasopressin and Its Immune Effects in Septic Shock","year":2010,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Heart and Stroke Foundation of British Columbia and Yukon; Heart and Stroke Foundation of Canada","keywords":"Vasopressin; Septic shock; Medicine; Arginine vasopressin receptor 2; Vasopressin receptor; Internal medicine; Endocrinology; Norepinephrine; Shock (circulatory); Sepsis; Receptor; Dopamine; Antagonist","retraction":null,"screen_n_in":null,"score":{"opus":0.08950455087845645,"gpt":0.3951459679355944,"spread":0.305641417057138,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008947593,0.0003912606,0.002640513,0.0005356133,0.00005963361,0.00004051196,0.0002156771,0.0004269728,0.00006117603],"category_scores_gemma":[0.0005727629,0.0002502021,0.0005742763,0.0002870275,0.00004728127,0.0001158696,0.0001136667,0.002384816,0.00001985978],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000201335,"about_ca_system_score_gemma":0.0003174946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002981046,"about_ca_topic_score_gemma":0.000006762416,"domain_scores_codex":[0.9978038,0.0003690684,0.001138274,0.0001486798,0.0002904452,0.0002496962],"domain_scores_gemma":[0.9976299,0.0006826237,0.000981376,0.0003634075,0.0001657843,0.000176854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000043984,0.001014916,0.0004477662,0.01216373,0.0007232329,0.0009632705,0.0001273782,1.590245e-7,0.00007645156,0.00002645098,0.0001117945,0.9843009],"study_design_scores_gemma":[0.005402751,0.001815065,0.02961365,0.1516904,0.006227048,0.005952049,0.00003577189,0.000006807597,0.0004334,0.00009175214,0.79819,0.0005412869],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03951262,0.9590454,4.295405e-7,0.00008846202,0.0004529111,0.0005696931,0.000004118555,0.000006846512,0.0003195287],"genre_scores_gemma":[0.009684606,0.9898086,0.0001447059,0.00005913019,0.0001379663,0.00002345032,0.0000117941,0.00004699299,0.00008281558],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9837596,"threshold_uncertainty_score":0.999995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1998246799","doi":"10.1159/000368232","title":"&lt;b&gt;&lt;i&gt;Helicobacter pylori&lt;/i&gt;&lt;/b&gt; Inhibits Dendritic Cell Maturation via Interleukin-10-Mediated Activation of the Signal Transducer and Activator of Transcription 3 Pathway","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University Health Network; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"CD86; STAT protein; Biology; Autocrine signalling; CD80; Immune system; Helicobacter pylori; Cytokine; Proinflammatory cytokine; STAT3; Chemistry; Immunology; Molecular biology; T cell; Signal transduction; Inflammation; CD40; Cell biology; Cell culture; In vitro","retraction":null,"screen_n_in":null,"score":{"opus":0.01172285723157618,"gpt":0.2208634311455282,"spread":0.209140573913952,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001527672,0.0005475716,0.001183356,0.0005972988,0.0002546935,0.00004251178,0.0004053482,0.0005072281,0.000145006],"category_scores_gemma":[0.0004825265,0.0004082419,0.0004255859,0.0006547279,0.0005206238,0.0008723691,0.00009775942,0.001416771,0.000008990479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003126443,"about_ca_system_score_gemma":0.0001961926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001526547,"about_ca_topic_score_gemma":0.00006269306,"domain_scores_codex":[0.9952182,0.001055552,0.00197224,0.0003361307,0.0008644832,0.000553413],"domain_scores_gemma":[0.9955881,0.00040412,0.001709907,0.0005318506,0.001525599,0.0002404867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003171591,0.0007202227,0.001823788,0.0003282421,0.0006195791,0.000007785527,0.004144412,0.00002206043,0.985589,0.00002952402,0.0003333183,0.003210473],"study_design_scores_gemma":[0.006979127,0.002505728,0.221913,0.001256558,0.0006295356,0.0002354192,0.0001944174,0.0003049488,0.7619101,0.00007977374,0.003693765,0.0002976432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940979,0.0004673952,0.001472938,0.002258015,0.0007358349,0.0005899884,0.00005372826,0.00003774194,0.0002864373],"genre_scores_gemma":[0.9984516,0.0003899637,0.0002332011,0.0003794493,0.0002783413,0.00001580384,0.00005571738,0.00007143437,0.0001244815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2236789,"threshold_uncertainty_score":0.9998369,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2081295605","doi":"10.1159/000171533","title":"Host Defence Peptide LL-37 Induces IL-6 Expression in Human Bronchial Epithelial Cells by Activation of the NF-κB Signaling Pathway","year":2008,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Cell biology; Chemokine; Cathelicidin; Cytokine; Innate immune system; Signal transduction; Biology; Interleukin 8; Flagellin; NF-κB; Immune system; Phosphorylation; Receptor; Immunology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01656669646643076,"gpt":0.2266116078741595,"spread":0.2100449114077287,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005152714,0.0001735113,0.0003682631,0.000116149,0.0004475127,0.00001353374,0.0004639389,0.0002139702,0.00008467638],"category_scores_gemma":[0.0001004303,0.0001206603,0.0001762207,0.0001599842,0.0003964224,0.0003771864,0.0001465308,0.001058787,0.000004278024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006513965,"about_ca_system_score_gemma":0.0001317141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000538089,"about_ca_topic_score_gemma":0.00001537457,"domain_scores_codex":[0.998377,0.0005134416,0.0006698986,0.0001083829,0.00009041063,0.0002409046],"domain_scores_gemma":[0.9986213,0.0001673884,0.0008498527,0.0001967113,0.0001468293,0.0000179603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002049937,0.0002574082,0.000983585,0.00001446804,0.00003905945,0.000003161169,0.001880368,0.00009267626,0.9954736,0.00001550331,0.0008072277,0.0002279292],"study_design_scores_gemma":[0.0009350622,0.0002099669,0.007668085,0.0003254594,0.00001114793,0.00006263883,0.000978037,5.747278e-7,0.9891008,0.00006229566,0.0005173513,0.000128619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988786,0.0002363128,0.00006346447,0.00007892979,0.0004351636,0.0001087805,0.00004864942,0.000006645799,0.0001434313],"genre_scores_gemma":[0.9993751,0.0001266068,0.00007645548,0.00007343743,0.00005835732,0.000001168702,0.000008842458,0.00001341246,0.0002666235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0066845,"threshold_uncertainty_score":0.4920385,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2517217175","doi":"10.1159/000448077","title":"TNFα Augments Cytokine-Induced NK Cell IFN&amp;#x03B3; Production through TNFR2","year":2016,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Wenzel Family Foundation; Canadian Liver Foundation; University of Calgary","keywords":"Innate immune system; Cytokine; Cell biology; Interleukin 12; Immune system; Tumor necrosis factor alpha; Biology; Interleukin 21; Lymphokine-activated killer cell; Interferon; Cytotoxicity; Immunology; Chemistry; Cytotoxic T cell; In vitro; T cell; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03207045518910624,"gpt":0.2723780015775972,"spread":0.2403075463884909,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007845308,0.0002413577,0.0003749877,0.0002282284,0.0003275627,0.00002710752,0.0003515636,0.0002268484,0.00191007],"category_scores_gemma":[0.0003913759,0.0001592143,0.0002396503,0.0002098683,0.0001130019,0.00091196,0.00009639093,0.0008738752,0.001215946],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00024754,"about_ca_system_score_gemma":0.0001104754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001114728,"about_ca_topic_score_gemma":0.00001027971,"domain_scores_codex":[0.9979659,0.0005510877,0.0008443096,0.0001853721,0.0001041296,0.0003492578],"domain_scores_gemma":[0.9979229,0.000118332,0.0009345441,0.000439651,0.0005538738,0.00003070798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008103797,0.0004074527,0.0002836732,0.00001677184,0.0001904698,0.00000378323,0.0004855944,0.000002320943,0.9630513,0.00003124255,0.02958477,0.005132257],"study_design_scores_gemma":[0.00176467,0.0004677258,0.002863459,0.000152929,0.00005510193,0.0005297822,0.0003145584,1.114266e-7,0.7441918,0.0001492243,0.2493434,0.000167235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.977632,0.000784559,0.0007542671,0.001229549,0.01497268,0.0001556637,0.000003914293,0.0000450784,0.00442232],"genre_scores_gemma":[0.9740697,0.0007503374,0.0001350546,0.0002296484,0.0001899867,0.000004173795,0.00001612608,0.00002602883,0.02457902],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2197586,"threshold_uncertainty_score":0.9995617,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065083294","doi":"10.1159/000334566","title":"Activity, Expression and Genetic Variation of Canine β-Defensin 103: A Multifunctional Antimicrobial Peptide in the Skin of Domestic Dogs","year":2012,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Center for Companion Animal Health, University of California, Davis; National Institute of Allergy and Infectious Diseases; University of California Davis School of Medicine; School of Veterinary Medicine, University of California, Davis; National Center for Research Resources; National Institutes of Health","keywords":"Defensin; Staphylococcus pseudintermedius; Beta defensin; Biology; Gene; Allele; Antimicrobial; Genetic variation; Antimicrobial peptides; Genetics; Gene expression; Molecular biology; Staphylococcus aureus; Microbiology; Staphylococcus; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01365326312598235,"gpt":0.2443150484886862,"spread":0.2306617853627038,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007745782,0.0001324804,0.0003593614,0.000200672,0.0001008201,0.000009328339,0.0001743513,0.000138523,0.0000597018],"category_scores_gemma":[0.0001604817,0.00009103259,0.00009979553,0.0001428119,0.0002608025,0.0002791014,0.00009316261,0.0004983225,0.000002051114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000307329,"about_ca_system_score_gemma":0.00006951665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001170764,"about_ca_topic_score_gemma":0.00004601067,"domain_scores_codex":[0.9986396,0.0005197049,0.0005056623,0.00006820951,0.00006630824,0.0002004996],"domain_scores_gemma":[0.9985856,0.000358758,0.0007436468,0.0001482785,0.0001476777,0.0000160671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004780122,0.000495681,0.01183159,0.00004700506,0.00007037234,0.000002826438,0.002574506,0.00009757446,0.9830503,0.00003286871,0.0003333866,0.0009858784],"study_design_scores_gemma":[0.00147825,0.0002332502,0.7588562,0.0002023479,0.00006104974,0.0007485904,0.000433313,0.000007293585,0.2377157,0.00004849855,0.0001189531,0.00009659352],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984896,0.0005532064,0.0002814808,0.000128003,0.000356199,0.000102874,0.00002127576,0.000002591542,0.00006478184],"genre_scores_gemma":[0.9991213,0.0001747966,0.0005477354,0.00004577089,0.00005545335,8.330281e-7,0.000005778247,0.000008583328,0.00003974897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7470246,"threshold_uncertainty_score":0.3712201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038357217","doi":"10.1159/000335901","title":"Signaling Pathways Mediating Chemokine Induction in Keratinocytes by Cathelicidin LL-37 and Flagellin","year":2012,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"Canadian Institutes of Health Research; National Institutes of Health; Michael Smith Health Research BC; Bill and Melinda Gates Foundation; Foundation for the National Institutes of Health","keywords":"Flagellin; CREB; Cell biology; Chemokine; Signal transduction; Protein kinase B; Biology; Cathelicidin; Chemistry; Immune system; Innate immune system; Immunology; Receptor; Transcription factor; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01890725750423043,"gpt":0.2308871470773297,"spread":0.2119798895730992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001116504,0.0001395187,0.0003046097,0.0001133184,0.0001688965,0.00002321567,0.0001184553,0.0001734503,0.00007368617],"category_scores_gemma":[0.0001716029,0.0001158137,0.00005901327,0.0001063007,0.0001202831,0.0004542512,0.00006361522,0.0008154198,0.000007801995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005090011,"about_ca_system_score_gemma":0.00003181938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000209294,"about_ca_topic_score_gemma":0.000005807904,"domain_scores_codex":[0.9988843,0.0002474609,0.0004840735,0.00006843298,0.00003761976,0.0002781723],"domain_scores_gemma":[0.9991995,0.0001820804,0.0004316971,0.00008424034,0.00007460751,0.00002788823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006990468,0.0001442461,0.00534949,0.00001544324,0.00004988203,0.000001758316,0.002892351,0.00001150123,0.9874331,0.00003675648,0.0004286407,0.003566885],"study_design_scores_gemma":[0.0007529942,0.0001228421,0.004974702,0.00009503055,0.00001948288,0.0001985762,0.002674146,0.000003757352,0.9903301,0.00005993738,0.0006402626,0.0001281879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920673,0.007108761,0.00007626243,0.0001345245,0.000426507,0.00005631127,0.00001294553,0.0000091705,0.0001081607],"genre_scores_gemma":[0.9987352,0.0006977516,0.000247224,0.00009706757,0.0001191887,0.000001027832,0.00001960028,0.00001217182,0.00007080453],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006667806,"threshold_uncertainty_score":0.4722744,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062229381","doi":"10.1159/000319864","title":"Inactivation of Macrophage Rab7 by Burkholderia cenocepacia","year":2010,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Hospital for Sick Children","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research","keywords":"Vacuole; Burkholderia cenocepacia; Phagosome; Biology; Microbiology; Cell biology; Macrophage; Phagocytosis; Rab; Virulence; Biochemistry; GTPase; Cytoplasm; In vitro; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.009664375247415237,"gpt":0.3056689925457108,"spread":0.2960046172982955,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008613523,0.0001016036,0.0003439249,0.0001943181,0.00006310754,0.00001718359,0.0002016642,0.00008537719,0.0003511285],"category_scores_gemma":[0.001953054,0.00007840753,0.0001042029,0.0002801813,0.0001699847,0.000275743,0.00005413276,0.001151366,0.000005420437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006920708,"about_ca_system_score_gemma":0.0001719347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009775977,"about_ca_topic_score_gemma":0.000006327076,"domain_scores_codex":[0.9986421,0.00009219313,0.0005291377,0.00006423382,0.0004877506,0.0001845806],"domain_scores_gemma":[0.998203,0.0001769927,0.0005110389,0.0002612456,0.0006988817,0.0001487767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006863344,0.0002583092,0.002138604,0.00007945352,0.00005849676,0.00001970727,0.0002039406,0.000001410908,0.9859662,0.00003167639,0.001918365,0.00863747],"study_design_scores_gemma":[0.001784316,0.0008559798,0.08834849,0.0001562164,0.00003091319,0.0002793183,0.000197905,0.00003360678,0.8934193,0.0003241515,0.01449601,0.00007374635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973811,0.0003916591,0.0002761581,0.0004797204,0.0002804644,0.0001155768,0.00001491004,0.000007187424,0.001053227],"genre_scores_gemma":[0.9958126,0.000151024,0.003673357,0.00004678977,0.00009740235,9.856025e-7,0.000007947263,0.00001450358,0.000195415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09254688,"threshold_uncertainty_score":0.5002176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964463157","doi":"10.1159/000358835","title":"The Meta-Genome of Sepsis: Host Genetics, Pathogens and the Acute Immune Response","year":2014,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; St. Paul's Hospital","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Heart and Stroke Foundation of Canada","keywords":"Sepsis; Host response; Immune system; Biology; Genome; Pathogen; Immunology; Microbiome; Inflammatory response; Genome-wide association study; Genetics; Inflammation; Gene; Single-nucleotide polymorphism; Genotype","retraction":null,"screen_n_in":null,"score":{"opus":0.11555314952995,"gpt":0.3822038402361765,"spread":0.2666506907062264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007235495,0.0004513623,0.003848302,0.0002227995,0.0002967252,0.00006352123,0.0005723268,0.0002137462,0.00004285959],"category_scores_gemma":[0.0009640975,0.000171657,0.00228542,0.0002793178,0.000520264,0.00003891072,0.0002293875,0.001081204,0.000007343482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001250031,"about_ca_system_score_gemma":0.0003988449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003282721,"about_ca_topic_score_gemma":0.000003339569,"domain_scores_codex":[0.9943182,0.00282567,0.001951909,0.0001491724,0.0004909732,0.0002640147],"domain_scores_gemma":[0.9920048,0.003462616,0.002783881,0.001071706,0.0005461078,0.0001308796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.007840036,0.001593589,0.00009777525,0.006605069,0.1775889,0.0005111562,0.001789641,0.00000224272,0.000525192,0.0002728887,0.0009962595,0.8021773],"study_design_scores_gemma":[0.002752387,0.001117859,0.004895198,0.003552777,0.0740445,0.001487792,0.0001489716,0.000001188075,0.00009851907,0.00005533688,0.9116588,0.0001866215],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009523287,0.9878278,0.000003280817,0.001521857,0.0002538426,0.0007200028,0.00006847899,0.000004583971,0.00007683003],"genre_scores_gemma":[0.005281255,0.9940602,0.0001428804,0.0001578165,0.0001102304,0.00004300807,0.00001057817,0.00004953969,0.000144476],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9106626,"threshold_uncertainty_score":0.6999967,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2671342613","doi":"10.1159/000477172","title":"Combined Stimulation with Interleukin-18 and Interleukin-12 Potently Induces Interleukin-8 Production by Natural Killer Cells","year":2017,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Interleukin; Interleukin 15; Interleukin 1β; Stimulation; Interleukin 2; Immunology; Interleukin 12; Interleukin 3; Chemistry; Biology; Cytokine; Immune system; Interleukin 21; Endocrinology; In vitro; T cell; Cytotoxic T cell; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01486564424299724,"gpt":0.2482454432920548,"spread":0.2333797990490576,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006833882,0.0003152536,0.0004747221,0.0003065906,0.0007506256,0.0002271611,0.0005049735,0.0002321808,0.0003407142],"category_scores_gemma":[0.0002836759,0.0002349825,0.0001337,0.00007304092,0.0004128384,0.001429135,0.0001874825,0.001567189,0.00004942887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001787409,"about_ca_system_score_gemma":0.0000651906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002479469,"about_ca_topic_score_gemma":0.00003149895,"domain_scores_codex":[0.998236,0.0003541182,0.0007569937,0.0002424301,0.0001122376,0.0002982418],"domain_scores_gemma":[0.9972494,0.00009069372,0.00155014,0.0005056747,0.0005599534,0.00004419585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00413122,0.000433873,0.002120167,0.00003125166,0.0005233684,0.000009688893,0.001364419,0.00001299204,0.948558,0.00001640642,0.03293706,0.009861552],"study_design_scores_gemma":[0.007443305,0.003514269,0.06033447,0.000734066,0.0002246656,0.00109597,0.003071021,0.00004780932,0.880994,0.00008258375,0.0418804,0.0005774239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813596,0.0007049614,0.0001153837,0.0007681082,0.01606334,0.0002175048,0.000001949133,0.00003142011,0.0007377054],"genre_scores_gemma":[0.9872603,0.0002147309,0.00007372592,0.000156309,0.00009178594,0.000003970148,0.00004505714,0.00002917951,0.01212489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06756399,"threshold_uncertainty_score":0.958231,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165026201","doi":"10.1159/000437330","title":"TNFAIP2 Inhibits Early TNFa-Induced NF-&amp;#954;B Signaling and Decreases Survival in Septic Shock Patients","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Septic shock; Tumor necrosis factor alpha; Sepsis; Medicine; Cytokine; Gene; Minor allele frequency; Gene expression; Immunology; Downregulation and upregulation; Biology; Cohort; Internal medicine; Allele; Allele frequency; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03550474021573934,"gpt":0.2650141761989782,"spread":0.2295094359832388,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001752576,0.0001966958,0.0004364258,0.0004000451,0.0001320948,0.00004420843,0.0002348174,0.0002419003,0.00005120826],"category_scores_gemma":[0.001164321,0.0001678961,0.00009358009,0.0002401794,0.00009141953,0.0005302631,0.0001246608,0.0008009924,0.00006705269],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000117741,"about_ca_system_score_gemma":0.0002057332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004197081,"about_ca_topic_score_gemma":0.00005334081,"domain_scores_codex":[0.9975838,0.001055822,0.0008229112,0.0001155177,0.0001151188,0.000306815],"domain_scores_gemma":[0.9984195,0.0002826288,0.0005259477,0.0002006232,0.0005062403,0.00006502587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002713602,0.000497349,0.08087133,0.00002749761,0.0002358872,0.00001876067,0.004947445,0.00002954738,0.9024159,0.00006435296,0.0002494986,0.007928768],"study_design_scores_gemma":[0.01074961,0.001914631,0.4158924,0.0005594796,0.0001065921,0.0002620273,0.001977003,0.000006646735,0.5641374,0.0005649845,0.003318478,0.0005107776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974724,0.001284169,0.00002453449,0.0000960143,0.0006879963,0.000132725,0.000002587574,0.00001357585,0.0002859681],"genre_scores_gemma":[0.9995986,0.00008260902,0.00006921355,0.00004899946,0.00003436438,0.000002122768,0.00002391997,0.00001687648,0.000123252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3382785,"threshold_uncertainty_score":0.6846605,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088497694","doi":"10.1159/000141865","title":"The Role of Epithelial Integrin Receptors in Recognition of Pulmonary Pathogens","year":2008,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"NOSM University; Lakehead University","funders":"","keywords":"Integrin; Bacterial adhesin; Cell biology; Biology; Receptor; Innate immune system; Transmembrane protein; Pattern recognition receptor; Cell adhesion molecule; Cell adhesion; Immune system; Immunology; Microbiology; Cell; Gene; Biochemistry; Virulence","retraction":null,"screen_n_in":null,"score":{"opus":0.02511481099695313,"gpt":0.2617489682961133,"spread":0.2366341572991602,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008930966,0.0002665897,0.001525839,0.0003437707,0.0001327331,0.000006552151,0.0005413648,0.0004673681,0.00008029645],"category_scores_gemma":[0.0002789499,0.0001652537,0.0007513185,0.0002569201,0.0005093912,0.0001206148,0.0001369261,0.001737377,0.00001749569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008134366,"about_ca_system_score_gemma":0.0003178486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002388959,"about_ca_topic_score_gemma":0.0000183082,"domain_scores_codex":[0.9968568,0.001153536,0.001601654,0.0000988494,0.00005801015,0.0002311625],"domain_scores_gemma":[0.9962791,0.0006355549,0.002559684,0.0002443916,0.000266923,0.00001439098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001806711,0.0002390906,0.00002677526,0.0005124136,0.000318197,0.00001027753,0.0002666964,4.403621e-7,0.01427694,0.00001345124,0.0001792025,0.9839758],"study_design_scores_gemma":[0.000423196,0.0003691825,0.00009886568,0.01344172,0.0002748157,0.001923224,0.001482172,2.325899e-7,0.02211649,0.0003541253,0.9592372,0.0002788438],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02285144,0.9754922,0.000001894049,0.00001144163,0.0007801033,0.0001804723,0.0001665507,0.000003516205,0.0005123467],"genre_scores_gemma":[0.01113263,0.9885544,0.00003849503,0.000004489582,0.00005092652,0.000003055516,0.00006201379,0.00002298577,0.0001310501],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.983697,"threshold_uncertainty_score":0.7548134,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2521395398","doi":"10.1159/000448894","title":"Hemin and Cobalt Protoporphyrin Inhibit NLRP3 Inflammasome Activation by Enhancing Autophagy: A Novel Mechanism of Inflammasome Regulation","year":2016,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Jenny ja Antti Wihurin Rahasto; Canadian Institutes of Health Research; Wihuri Research Institute; Helsingin ja Uudenmaan Sairaanhoitopiiri; Ida Montinin Säätiö","keywords":"Inflammasome; COPP; Hemin; Autophagy; Proinflammatory cytokine; Cell biology; Chemistry; Caspase 1; Inflammation; Biology; Heme; Apoptosis; Biochemistry; Heme oxygenase; Immunology; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.00552703252276496,"gpt":0.2164039402870436,"spread":0.2108769077642786,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008410877,0.0001991633,0.0002965703,0.0001552508,0.00009751075,0.00002244895,0.000212345,0.0002155325,0.00002399219],"category_scores_gemma":[0.0003778029,0.0001528515,0.0001152297,0.0001413283,0.0001156477,0.00007715543,0.0001433564,0.0002046686,0.000001398838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004849949,"about_ca_system_score_gemma":0.0001452093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002321113,"about_ca_topic_score_gemma":0.000007090403,"domain_scores_codex":[0.9984799,0.0000960659,0.0007974803,0.0001560949,0.0002461021,0.0002243601],"domain_scores_gemma":[0.9982023,0.00003754599,0.000982379,0.0002795841,0.0004325155,0.00006563625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003537008,0.00008870348,0.0003989557,0.00004637924,0.00009001427,8.855187e-7,0.0001802575,0.000005440009,0.992617,0.0003866864,0.0001121874,0.005719752],"study_design_scores_gemma":[0.002133134,0.000551892,0.004836084,0.0002332449,0.00002106884,0.00003840311,0.0001544001,0.00001078708,0.9888964,0.0006977016,0.002241291,0.0001855625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928823,0.0002774346,0.005977625,0.0002762694,0.00009497027,0.0002964742,0.00001159934,0.000006332733,0.0001769727],"genre_scores_gemma":[0.9987709,0.0002889678,0.0004753472,0.00005478192,0.00008456659,0.00001186144,0.00002148137,0.00002328824,0.0002688094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005888574,"threshold_uncertainty_score":0.6233101,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995298494","doi":"10.1159/000357644","title":"Interleukin-13-Mediated Paneth Cell Degranulation and Antimicrobial Peptide Release","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Österreichischen Akademie der Wissenschaften; Deutsche Forschungsgemeinschaft; Canadian Institutes of Health Research; Deutsche Akademie der Naturforscher Leopoldina - Nationale Akademie der Wissenschaften; Federation of European Biochemical Societies","keywords":"Paneth cell; Degranulation; Muramyl dipeptide; Antimicrobial peptides; Biology; Microbiology; Cell biology; Chemistry; Biochemistry; Antimicrobial; Receptor; Immune system; Immunology; Small intestine","retraction":null,"screen_n_in":null,"score":{"opus":0.008945636697304653,"gpt":0.2381371470706715,"spread":0.2291915103733669,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004640314,0.0001210697,0.0002952678,0.0001733099,0.00009270525,0.0000248437,0.00008594865,0.00008021147,0.00004692174],"category_scores_gemma":[0.0003598934,0.00008828834,0.0001083461,0.0001103224,0.000099522,0.0001406966,0.00003669197,0.0004412221,0.00001285322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003547012,"about_ca_system_score_gemma":0.0001052964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004332705,"about_ca_topic_score_gemma":0.000005730279,"domain_scores_codex":[0.9989611,0.0002093892,0.000436098,0.00007432669,0.0001771537,0.0001419679],"domain_scores_gemma":[0.9989142,0.0001132105,0.000363954,0.0001557263,0.0002495197,0.0002033714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00365171,0.00129936,0.2026202,0.0005917068,0.0001651342,0.0003328467,0.001597782,0.0001028788,0.7293087,0.00001440913,0.009062587,0.05125271],"study_design_scores_gemma":[0.006763187,0.001775736,0.9223689,0.0006554641,0.0002880631,0.0006345304,0.0004573619,0.0006687847,0.04731375,0.00005902664,0.01875073,0.0002645073],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998198,0.0003755476,0.0001919148,0.000274973,0.0001585095,0.00007907642,0.000004980561,0.00001378764,0.0007032532],"genre_scores_gemma":[0.9986059,0.0001508726,0.0002444831,0.0006791158,0.0001871383,3.608774e-7,0.00001235233,0.00001475286,0.0001049978],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7197487,"threshold_uncertainty_score":0.3600294,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034779847","doi":"10.1159/000380910","title":"Sequential Immune Responses: The Weapons of Immunity","year":2015,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Heart, Lung, and Blood Institute","keywords":"Immune system; Innate immune system; Biology; Immunity; Acquired immune system; Macrophage; Immunology; Host (biology); Antigen; CCL18; Genetics; In vitro","retraction":null,"screen_n_in":null,"score":{"opus":0.06781719523171753,"gpt":0.3491689502938698,"spread":0.2813517550621523,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.01032363,0.0006096371,0.003075987,0.000840549,0.0004562481,0.00005033792,0.002295201,0.0009874369,0.0003839129],"category_scores_gemma":[0.002009872,0.0003699494,0.00167,0.0007296265,0.0008061279,0.0003642456,0.0005897624,0.003981668,0.000221667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003217685,"about_ca_system_score_gemma":0.002684922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002305201,"about_ca_topic_score_gemma":0.000003899954,"domain_scores_codex":[0.9859334,0.009742827,0.003433787,0.0001709976,0.0002308097,0.000488244],"domain_scores_gemma":[0.9902059,0.001638934,0.005446623,0.001398355,0.001264711,0.00004550603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00345934,0.0006569535,0.000004431975,0.003557177,0.005630449,0.00006837248,0.002620204,0.000003941468,0.02412951,0.0004320779,0.005108808,0.9543287],"study_design_scores_gemma":[0.001131043,0.0006599211,0.00007558834,0.005778887,0.001563072,0.002079039,0.0006362237,2.057062e-7,0.005173394,0.0001117689,0.982448,0.0003428998],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008219473,0.9878574,0.00002411748,0.0001104125,0.002386192,0.0005400924,0.00007559622,0.00002084795,0.0007658434],"genre_scores_gemma":[0.004195401,0.993697,0.00003523478,0.00001834209,0.0001094196,0.00001444411,0.0001522426,0.00006159947,0.001716272],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9773391,"threshold_uncertainty_score":0.9998752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108158566","doi":"10.1159/000338648","title":"Synthetic Immunomodulatory Peptide IDR-1002 Enhances Monocyte Migration and Adhesion on Fibronectin","year":2012,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity; University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; Foundation for the National Institutes of Health","keywords":"Fibronectin; Chemokine; Monocyte; PI3K/AKT/mTOR pathway; Integrin; Innate immune system; Cell biology; Immune system; Protein kinase B; Biology; Immunology; Chemistry; Signal transduction; Biochemistry; Receptor; Extracellular matrix","retraction":null,"screen_n_in":null,"score":{"opus":0.0153328623754277,"gpt":0.2407114041409836,"spread":0.2253785417655559,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007094255,0.0001843027,0.0003318276,0.0001697847,0.0003048065,0.00003017648,0.0001656775,0.0001628976,0.0001438366],"category_scores_gemma":[0.0001203415,0.0001440479,0.0001281106,0.00007291349,0.0001957717,0.000553155,0.00007121287,0.0006317995,0.00007384163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006258665,"about_ca_system_score_gemma":0.0000350397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001840051,"about_ca_topic_score_gemma":0.00001156642,"domain_scores_codex":[0.9987904,0.0003343219,0.0004351435,0.00009443436,0.00005106624,0.0002945947],"domain_scores_gemma":[0.9989672,0.0002240228,0.0004928119,0.0001907149,0.00009044932,0.00003482742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004466148,0.0002187738,0.001889686,0.0000226973,0.0001293646,0.000001879352,0.001171339,0.000008588818,0.9877678,0.000135918,0.001052798,0.007154587],"study_design_scores_gemma":[0.0006838168,0.0007142451,0.06989051,0.0002848229,0.00005954928,0.0003627225,0.001270021,0.000002641184,0.9187885,0.0000997243,0.007640419,0.0002030288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922145,0.006127984,0.00005112371,0.000201127,0.0007987848,0.00007742982,0.000006319485,0.00001591805,0.0005068098],"genre_scores_gemma":[0.9979349,0.00110732,0.0001347692,0.0001053384,0.00008918437,0.000001338689,0.000005898314,0.00001545004,0.0006057952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06897926,"threshold_uncertainty_score":0.5874104,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2547562824","doi":"10.1159/000450576","title":"Virus-Infected Human Mast Cells Enhance Natural Killer Cell Functions","year":2016,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Consejo Nacional de Ciencia y Tecnología","keywords":"Mast cell; Interleukin 12; Biology; Immune system; Cytotoxic T cell; Lymphokine-activated killer cell; Interleukin 33; Interferon; Interleukin 21; Natural killer cell; Immunology; Cytokine; Cell biology; T cell; Interleukin; In vitro","retraction":null,"screen_n_in":null,"score":{"opus":0.008940061246049192,"gpt":0.2411007363706033,"spread":0.2321606751245541,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004294003,0.000202747,0.0003067848,0.0002816845,0.0004100297,0.00002665583,0.0002852384,0.0001990366,0.005759848],"category_scores_gemma":[0.00009204273,0.000131407,0.0002555189,0.0001793117,0.0001586993,0.000488203,0.00007899277,0.0009795844,0.001530387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001500158,"about_ca_system_score_gemma":0.00006263429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008851012,"about_ca_topic_score_gemma":0.00001813651,"domain_scores_codex":[0.9984112,0.0004191402,0.0006797526,0.0001303777,0.00006515715,0.0002943295],"domain_scores_gemma":[0.9984131,0.0001738433,0.000675361,0.0003031126,0.0004029142,0.00003166666],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003256227,0.0002869212,0.0001453181,0.000006584254,0.0001382471,0.000003822684,0.0001508302,0.000001674906,0.9503678,0.00002375901,0.04559511,0.002954272],"study_design_scores_gemma":[0.001201874,0.0004023832,0.004861433,0.0000735276,0.00004113185,0.0001234592,0.000158943,3.504402e-7,0.7573638,0.00002301206,0.2356036,0.0001465165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9718791,0.001177358,0.0007591455,0.000330862,0.01987892,0.00009917728,0.000004993666,0.00004979239,0.005820615],"genre_scores_gemma":[0.9248406,0.0002261304,0.00002335803,0.0001662104,0.00009196967,0.000002275652,0.00001569179,0.00001861466,0.07461519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.193004,"threshold_uncertainty_score":0.999247,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994398724","doi":"10.1159/000354984","title":"Mast Cell-Deficient KitW-sh Mice Develop House Dust Mite-Induced Lung Inflammation despite Impaired Eosinophil Recruitment","year":2013,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Mast cells and histamine","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"House dust mite; Immunology; Eosinophil; Inflammation; Eotaxin; Mast cell; Allergic inflammation; Bronchoalveolar lavage; Immunoglobulin E; Ovalbumin; Biology; Lung; Allergy; Immune system; Allergen; Medicine; Asthma; Internal medicine; Antibody","retraction":null,"screen_n_in":null,"score":{"opus":0.02784315278006116,"gpt":0.2437517441528791,"spread":0.2159085913728179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009347942,0.0003017892,0.0004832861,0.0004456251,0.0004081593,0.00008427069,0.0004789042,0.0003125936,0.0008684956],"category_scores_gemma":[0.0001476163,0.0002487441,0.0001712959,0.000430408,0.0001135919,0.0003694708,0.0001675338,0.0009712643,0.0003845631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003007413,"about_ca_system_score_gemma":0.0002165376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004212781,"about_ca_topic_score_gemma":0.00003182437,"domain_scores_codex":[0.997619,0.0004937751,0.001113578,0.0001780139,0.000124369,0.0004712231],"domain_scores_gemma":[0.9975275,0.000137312,0.001084658,0.0003607244,0.0008082797,0.00008148859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000201654,0.0003607741,0.0009597665,0.00006735831,0.0001706023,0.0000190483,0.002027723,0.00003453305,0.9811814,0.00003535222,0.003657155,0.01128465],"study_design_scores_gemma":[0.005083856,0.00103742,0.10614,0.0003034896,0.0002020047,0.0004873614,0.001745759,0.00006540355,0.8300418,0.00006338593,0.05417626,0.0006533103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946218,0.001826507,0.0001339265,0.0006802563,0.001165851,0.0005314357,0.0000103281,0.00004882797,0.000981085],"genre_scores_gemma":[0.9973289,0.0002986864,0.0005061937,0.0001379186,0.00007856706,0.0000224599,0.00003283551,0.00003953112,0.001554938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1511396,"threshold_uncertainty_score":0.9999965,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2206734247","doi":"10.1159/000382032","title":"Modulation of Clr Ligand Expression and NKR-P1 Receptor Function during Murine Cytomegalovirus Infection","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Innate immune system; Downregulation and upregulation; Receptor; Immune system; Cycloheximide; Virology; Virus; Cytomegalovirus; Cell; Human cytomegalovirus; Cell biology; Immunology; Molecular biology; Herpesviridae; Gene; Protein biosynthesis; Viral disease; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01928138662830871,"gpt":0.246202812520351,"spread":0.2269214258920423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006726229,0.0001315562,0.0002693648,0.0003420494,0.0001540469,0.00001858624,0.00007152515,0.0001936328,0.0001526908],"category_scores_gemma":[0.000208147,0.0001112222,0.00008898592,0.0001599228,0.00007652189,0.0006680115,0.00006071388,0.00055858,0.00003201063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001055369,"about_ca_system_score_gemma":0.00004526455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001699724,"about_ca_topic_score_gemma":0.000005110176,"domain_scores_codex":[0.9987884,0.0003011093,0.0006129474,0.00009323866,0.00007281832,0.0001314822],"domain_scores_gemma":[0.9985377,0.00005150425,0.0007708258,0.0001534515,0.0004528151,0.00003375933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002386462,0.0001569318,0.006057852,0.00002967314,0.00009204459,6.98487e-7,0.000514151,0.0001056057,0.9874378,0.000011135,0.001296854,0.001910826],"study_design_scores_gemma":[0.002737683,0.0008667905,0.1320585,0.0001503641,0.00004344007,0.0002237605,0.0003937825,0.00001740347,0.8521525,0.00005834299,0.01118677,0.0001105862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940047,0.0009890135,0.0004745765,0.00004978439,0.003934938,0.00008561229,0.000001485159,0.00002053727,0.000439298],"genre_scores_gemma":[0.998514,0.0004120092,0.00004970092,0.00002129468,0.00007891146,0.000001645311,0.0000221647,0.00001191278,0.0008883374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1352852,"threshold_uncertainty_score":0.4535512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057259378","doi":"10.1159/000356963","title":"Induction of Phagocytosis and Intracellular Signaling by an Inhibitory Channel Catfish Leukocyte Immune-Type Receptor: Evidence for Immunoregulatory Receptor Functional Plasticity in Teleosts","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Cell biology; Signal transduction; Intracellular; Receptor; Innate immune system; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03243760557369606,"gpt":0.2572005304133896,"spread":0.2247629248396936,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002055233,0.0002403601,0.0005601913,0.000528692,0.0001844124,0.0000244511,0.0002240081,0.0003734309,0.000207264],"category_scores_gemma":[0.0009599843,0.0002342208,0.000128893,0.0002890544,0.0002311018,0.0009717709,0.00006235264,0.001094907,0.000009534979],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002795429,"about_ca_system_score_gemma":0.0001756316,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003462685,"about_ca_topic_score_gemma":0.00002387307,"domain_scores_codex":[0.9973556,0.0007821015,0.00123886,0.0002210454,0.0001053457,0.0002970099],"domain_scores_gemma":[0.9976315,0.0005939805,0.0009884451,0.0001994132,0.0005490472,0.00003761817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004588354,0.0003940729,0.001247382,0.00006659172,0.00009783715,3.33116e-7,0.0008442703,0.0002783341,0.9875528,0.00002531332,0.001231086,0.003673609],"study_design_scores_gemma":[0.002870307,0.001676607,0.01361407,0.0005898671,0.00004277849,0.00006544491,0.001245036,0.0001422196,0.975432,0.00005582173,0.004031966,0.0002338704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889454,0.005607686,0.0007550325,0.0000839325,0.004348615,0.0002240709,0.000004316844,0.00001327702,0.00001770058],"genre_scores_gemma":[0.9987243,0.000704552,0.0001235383,0.00004719644,0.0001083673,0.000009594356,0.00006738428,0.00002400436,0.0001910502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01236669,"threshold_uncertainty_score":0.9551246,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2206277444","doi":"10.1159/000358239","title":"Single Immunoglobulin Interleukin-1 Receptor-Related Molecule Impairs Host Defense during Pneumonia and Sepsis Caused by &lt;b&gt;&lt;i&gt;Streptococcus Pneumoniae&lt;/i&gt;&lt;/b&gt;","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Sepsis; Immunology; Microbiology; Pneumonia; Receptor; Antibody; Pneumococcal pneumonia; Interleukin; Biology; Medicine; Cytokine; Antibiotics; Internal medicine; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.00900468016201434,"gpt":0.236859927055142,"spread":0.2278552468931277,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001921098,0.001002438,0.001715709,0.001028004,0.001109819,0.0002794353,0.0007207643,0.0007691473,0.0002965597],"category_scores_gemma":[0.00119336,0.0008830756,0.0008361358,0.001168376,0.0006579831,0.0006974244,0.0004260375,0.002406738,0.0001374647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009651833,"about_ca_system_score_gemma":0.000398622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003280957,"about_ca_topic_score_gemma":0.00008234719,"domain_scores_codex":[0.9933975,0.00117686,0.002526586,0.0006579657,0.001013152,0.001227907],"domain_scores_gemma":[0.9943413,0.0004456041,0.001897073,0.001259644,0.00110646,0.0009499667],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003743263,0.001166435,0.006545174,0.0001719602,0.0009775871,0.0002501081,0.001293101,0.00005865521,0.9858187,0.00004345491,0.002016229,0.001284253],"study_design_scores_gemma":[0.01920253,0.00913298,0.3590012,0.003701208,0.001963228,0.004467635,0.000621475,0.0005318517,0.4233659,0.0001772475,0.1751038,0.002730948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990363,0.002798765,0.00006958653,0.002004275,0.001281555,0.000743705,0.00009292502,0.0002308299,0.002415374],"genre_scores_gemma":[0.996715,0.001213806,0.00008627389,0.0004414064,0.0002822686,0.00003445237,0.00004850154,0.000187881,0.0009904255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5624528,"threshold_uncertainty_score":0.9998947,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013645720","doi":"10.1159/000334251","title":"RAGE Does Not Contribute to Renal Injury and Damage upon Ischemia/Reperfusion-Induced Injury","year":2011,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Advanced Glycation End Products research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of General Medical Sciences","keywords":"Rage (emotion); HMGB1; Glycation; Medicine; Renal injury; Ischemia; Acute kidney injury; Renal ischemia; Receptor; Reperfusion injury; Kidney; Immunology; Internal medicine; Biology; Neuroscience","retraction":null,"screen_n_in":null,"score":{"opus":0.02185058067229613,"gpt":0.3063620548145879,"spread":0.2845114741422918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001089356,0.0001539241,0.000219975,0.0001420319,0.0001458997,0.00002686688,0.0003713338,0.000134224,0.00007176269],"category_scores_gemma":[0.001118617,0.0001136498,0.00006777788,0.0001598554,0.00006609879,0.00002927001,0.000373089,0.0005083297,0.000005744842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002903141,"about_ca_system_score_gemma":0.0001404126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003531561,"about_ca_topic_score_gemma":0.000007966227,"domain_scores_codex":[0.9986911,0.0002107353,0.0004276349,0.0001863045,0.0002322207,0.0002520077],"domain_scores_gemma":[0.9984568,0.0000262666,0.0002738031,0.0004430031,0.0005992532,0.0002008143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001399613,0.0000761022,0.0004238399,0.00001230463,0.00004999943,0.00001071897,0.0002231489,0.000001968884,0.9883995,0.00001949623,0.0004349726,0.008948325],"study_design_scores_gemma":[0.0004798965,0.0008206487,0.003962358,0.00003351466,0.00001198671,0.00003523006,0.0001130348,0.000002879184,0.9861563,0.0001340913,0.008096776,0.0001532101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980891,0.0001625173,0.0004878503,0.0005364215,0.0001913183,0.0001419268,0.0000383679,0.000005463687,0.0003470675],"genre_scores_gemma":[0.9967101,0.0004280272,0.001844302,0.0003797072,0.0001979519,0.000003796042,0.00001203746,0.00001916768,0.0004048872],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008795114,"threshold_uncertainty_score":0.4634505,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065078219","doi":"10.1159/000360764","title":"Sustained Activation of Interferon Regulatory Factor 3 during Infection by Paramyxoviruses Requires MDA5","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"MDA5; RIG-I; Gene knockdown; Interferon regulatory factors; Biology; Interferon; Innate immune system; Cell biology; Sendai virus; Transcription factor; Virology; Virus; Gene; RNA; RNA interference; Immunology; Immune system; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01241065252757205,"gpt":0.2550012655083131,"spread":0.2425906129807411,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006330347,0.0001707622,0.0003951125,0.0003288196,0.0001601132,0.00001780932,0.00024069,0.0002139538,0.0002424636],"category_scores_gemma":[0.0007471919,0.0001399539,0.0001679531,0.0001287863,0.0001966604,0.0004251706,0.0001164208,0.0006174593,0.00001562502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001399213,"about_ca_system_score_gemma":0.00006840931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001974552,"about_ca_topic_score_gemma":0.000006780373,"domain_scores_codex":[0.9980267,0.000835476,0.0007540617,0.00009208538,0.00006860092,0.0002231244],"domain_scores_gemma":[0.9982101,0.0002428698,0.0008934182,0.0002624482,0.0003699319,0.00002123368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003150182,0.0001864006,0.002423069,0.00005549321,0.0002103198,5.752275e-7,0.0005319964,0.000007726731,0.9893069,0.00008331735,0.0008546289,0.003189362],"study_design_scores_gemma":[0.001383633,0.001151344,0.06706094,0.0001915726,0.00002429209,0.00006670882,0.0003387728,0.000002059054,0.9260207,0.00006669559,0.003572409,0.0001208027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980366,0.0005795777,0.0003073172,0.00009266565,0.0006013531,0.00008012739,0.000006605838,0.0000218891,0.0002738249],"genre_scores_gemma":[0.9991149,0.0001672634,0.00001125493,0.00004275911,0.00003090516,0.000001494279,0.00001011546,0.00001663683,0.0006046798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06463788,"threshold_uncertainty_score":0.5707153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2249467214","doi":"10.1159/000442469","title":"In Search of a Cure for Sepsis: Taming the Monster in Critical Care Medicine","year":2016,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Manitoba Health Research Council","keywords":"Sepsis; Medicine; Intensive care medicine; Proinflammatory cytokine; Immunology; Inflammation","retraction":null,"screen_n_in":null,"score":{"opus":0.2522703863358644,"gpt":0.507283969561906,"spread":0.2550135832260416,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001683967,0.0002645242,0.002130982,0.000625678,0.00004386948,0.000008569571,0.0003046611,0.0002312562,0.00009456007],"category_scores_gemma":[0.001182647,0.0001159374,0.0005336078,0.0003658547,0.0002067285,0.00008685292,0.00007707821,0.001050698,0.000002427503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004248474,"about_ca_system_score_gemma":0.0004768094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001302092,"about_ca_topic_score_gemma":0.00003013878,"domain_scores_codex":[0.9972265,0.0005204935,0.001446373,0.0001297636,0.0004059536,0.000270856],"domain_scores_gemma":[0.996114,0.002398223,0.0004765313,0.0003839412,0.0005364781,0.00009078572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002407141,0.0009602226,0.002434484,0.03286964,0.0006672725,0.0003953056,0.003734369,5.594913e-7,0.00001352284,0.0002321307,0.001579839,0.9568719],"study_design_scores_gemma":[0.006340003,0.002686673,0.00338199,0.3511474,0.002505114,0.0007790505,0.005202251,0.000002993096,0.00009254256,0.0002048501,0.6273848,0.000272333],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002694839,0.9920021,0.000007496837,0.004050798,0.0002604296,0.0007337709,0.00002898289,0.00000180856,0.0002198169],"genre_scores_gemma":[0.02601756,0.9733565,0.0001134276,0.0001679082,0.0002283628,0.00005260516,0.000007920999,0.0000308503,0.00002484699],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9565996,"threshold_uncertainty_score":0.472779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089553352","doi":"10.1159/000368779","title":"Invariant Natural Killer T Cells Promote T Cell Immunity by Modulating the Function of Lung Dendritic Cells during Chlamydia pneumoniae Infection","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity; University of Manitoba","funders":"Canadian Institutes of Health Research; Health Canada; Canada Research Chairs; University of Manitoba; Manitoba Health Research Council","keywords":"Adoptive cell transfer; Immunology; Cytokine; Immunity; Biology; Natural killer T cell; Acquired immune system; Immune system; T cell","retraction":null,"screen_n_in":null,"score":{"opus":0.005311954151685702,"gpt":0.205425285193611,"spread":0.2001133310419253,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00157289,0.0002816106,0.000456948,0.0002671316,0.0006931492,0.00005544351,0.0003511448,0.0002807461,0.00035277],"category_scores_gemma":[0.0002062406,0.0002092101,0.0003043806,0.0002914801,0.0001647563,0.0005694454,0.0001453078,0.002201338,0.00006150951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001717073,"about_ca_system_score_gemma":0.00005895761,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005127111,"about_ca_topic_score_gemma":0.00001414218,"domain_scores_codex":[0.9969125,0.001348025,0.001093015,0.0001600705,0.0001301508,0.0003562701],"domain_scores_gemma":[0.9972903,0.0002966968,0.001409403,0.0004322164,0.0005389203,0.00003252189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003957912,0.0003017356,0.0007017795,0.00009095052,0.0002149458,9.855631e-7,0.0007491665,0.0002806026,0.9942046,0.00001435855,0.00215672,0.0008883212],"study_design_scores_gemma":[0.001705689,0.0004545741,0.03250037,0.0001756971,0.0001643323,0.0001539094,0.0003902515,0.0004744983,0.9576523,0.00003271252,0.006068904,0.0002267903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984491,0.0009874222,0.000657574,0.00008588897,0.01290186,0.0002203379,0.00000203452,0.00003046977,0.000623389],"genre_scores_gemma":[0.9965995,0.0002712171,0.00002725361,0.00008578347,0.0000870506,0.00000426961,0.00002664162,0.00002986357,0.002868426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03655237,"threshold_uncertainty_score":0.9563841,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963725661","doi":"10.1159/000369342","title":"&lt;b&gt;&lt;i&gt;Unc93b1&lt;/i&gt;&lt;/b&gt;-Dependent Endosomal Toll-Like Receptor Signaling Regulates Inflammation and Mortality during Coxsackievirus B3 Infection","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; McGill University; Christie (Canada)","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Inflammation; Myocarditis; Toll-like receptor; TLR7; Fibrosis; Immunology; Viral Myocarditis; Biology; TLR3; Coxsackievirus; Endosome; Immune system; Receptor; Innate immune system; Medicine; Pathology; Virus; Enterovirus; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.03552184867519136,"gpt":0.3029003146903421,"spread":0.2673784660151508,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003968896,0.0004893577,0.001008846,0.0009136169,0.0007789208,0.0002365501,0.0003151383,0.000509158,0.0002672949],"category_scores_gemma":[0.001404566,0.0004283518,0.0003466905,0.0007137513,0.0004339714,0.001468391,0.0003470637,0.001770032,0.00007036548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008402403,"about_ca_system_score_gemma":0.0004970831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001759788,"about_ca_topic_score_gemma":0.0001966796,"domain_scores_codex":[0.9951031,0.00102314,0.00168292,0.0003737313,0.00108156,0.0007356008],"domain_scores_gemma":[0.9956602,0.0001864729,0.00114101,0.0006860946,0.001840075,0.0004861474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001516312,0.0004556291,0.01753079,0.0001871397,0.000818468,0.0001106673,0.0007448921,0.0002822218,0.9717792,0.0001572003,0.0005607714,0.005856655],"study_design_scores_gemma":[0.01153038,0.004260334,0.5429684,0.001189018,0.0006635048,0.00281903,0.0003223977,0.0007771727,0.4141389,0.0005691088,0.01990929,0.0008524195],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913673,0.004566933,0.0001233128,0.0004876925,0.001394412,0.0005841107,0.00001946757,0.0001071375,0.001349664],"genre_scores_gemma":[0.9946675,0.003322954,0.0002442563,0.00004518732,0.0006775749,0.00002480778,0.00004728532,0.00006503769,0.0009053593],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5576403,"threshold_uncertainty_score":0.9998168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2803183027","doi":"10.1159/000487818","title":"The Understanding and Management of Organism Toxicity in Septic Shock","year":2018,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Septic shock; Immune system; Biology; Sepsis; Inflammasome; Immunology; Organism; Innate immune system; Microbiology; Inflammation; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.2246028811503597,"gpt":0.4038067822947692,"spread":0.1792039011444095,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001164856,0.0002030727,0.001133631,0.0002067644,0.0000985033,0.00002668741,0.0001824527,0.0001151342,0.00002743078],"category_scores_gemma":[0.00006715894,0.0001080935,0.0002721853,0.0002706869,0.0001245434,0.00004526895,0.0001220636,0.0004853625,0.000002889915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006072474,"about_ca_system_score_gemma":0.0001200834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001532946,"about_ca_topic_score_gemma":0.00001457046,"domain_scores_codex":[0.9983609,0.0002087505,0.0009106163,0.00009054878,0.0002687276,0.0001604339],"domain_scores_gemma":[0.9983816,0.0003207508,0.0008450173,0.0002921096,0.00009089773,0.00006967658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002705647,0.00260333,0.002163961,0.04748366,0.01057031,0.001157224,0.001190997,6.213988e-7,0.00001086524,0.003710748,0.002726158,0.9281116],"study_design_scores_gemma":[0.006316195,0.003875981,0.01490128,0.2488984,0.0122829,0.002496779,0.004685286,0.000006114466,0.0001847361,0.002636947,0.7030577,0.0006577061],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009279012,0.9891646,0.00001012747,0.000148149,0.0001786616,0.0003844324,0.000003030115,0.000002584904,0.0008294028],"genre_scores_gemma":[0.01591915,0.983794,0.0001405868,0.00002658646,0.00004329316,0.000004491171,0.000002162571,0.00001987071,0.00004982365],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9274539,"threshold_uncertainty_score":0.4407926,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092786350","doi":"10.1159/000323880","title":"A Nonsynonymous Polymorphism of IRAK4 Associated with Increased Prevalence of Gram-Positive Infection and Decreased Response to Toll-Like Receptor Ligands","year":2011,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Institutes of Health; Amgen","keywords":"Biology; Single-nucleotide polymorphism; Haplotype; Immunology; Allele; Systemic inflammatory response syndrome; Sepsis; Genetics; Gene; Genotype","retraction":null,"screen_n_in":null,"score":{"opus":0.01183223331237446,"gpt":0.2202942616806106,"spread":0.2084620283682361,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002231474,0.0001816352,0.0004823545,0.0005020241,0.0001322306,0.000007556103,0.0001957314,0.0002288231,0.0001196234],"category_scores_gemma":[0.001420072,0.0001451464,0.0001103838,0.0003554385,0.0002613881,0.0002717031,0.00007066977,0.0004265752,0.000006048855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008371507,"about_ca_system_score_gemma":0.0002764128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008899419,"about_ca_topic_score_gemma":0.00002586224,"domain_scores_codex":[0.9975606,0.001261217,0.0007640282,0.0001097085,0.00009647694,0.0002079543],"domain_scores_gemma":[0.9972699,0.0005482729,0.001152898,0.0002391775,0.0007387699,0.00005100038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.03021961,0.0004599115,0.01771836,0.00004164706,0.0004885381,0.000008097611,0.003545285,0.000001496447,0.9465524,0.00001634451,0.00008849258,0.0008598478],"study_design_scores_gemma":[0.0017872,0.002843917,0.4553502,0.0004669625,0.0001248548,0.0001357482,0.0001461595,0.000001029492,0.5389851,0.00001350794,0.0000506007,0.00009463262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986666,0.0006112667,0.0001070329,0.00006803531,0.0001715942,0.0002278481,0.00003307219,0.00001250902,0.0001020548],"genre_scores_gemma":[0.9993945,0.000204133,0.0001317819,0.00004562211,0.000006835973,0.000004703406,0.00001260953,0.00001456449,0.000185218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4376319,"threshold_uncertainty_score":0.5918898,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2782851795","doi":"10.1159/000486104","title":"The&lt;b&gt;&lt;i&gt; IL20&lt;/i&gt;&lt;/b&gt; Genetic Polymorphism Is Associated with Altered Clinical Outcome in Septic Shock","year":2018,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Japan Society for the Promotion of Science; Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Septic shock; Polymorphism (computer science); Outcome (game theory); Medicine; Biology; Genetics; Immunology; Sepsis; Genotype; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02506976960208149,"gpt":0.2885080944426777,"spread":0.2634383248405962,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0057172,0.000581126,0.001329181,0.0005775086,0.0009524769,0.0001286229,0.001282586,0.0009054558,0.0007035428],"category_scores_gemma":[0.002037467,0.0004131349,0.0005722366,0.0006902599,0.001175198,0.0004789167,0.000338565,0.002039053,0.0005703741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004000665,"about_ca_system_score_gemma":0.0005846776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003777947,"about_ca_topic_score_gemma":0.0003368601,"domain_scores_codex":[0.9915296,0.003521263,0.003177023,0.0003769204,0.0003224033,0.001072769],"domain_scores_gemma":[0.9939758,0.001456858,0.002404124,0.001046744,0.0009966167,0.0001198304],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005636897,0.0009522638,0.01239434,0.00002709518,0.002167491,0.0001448469,0.002409083,0.00001898557,0.9529599,0.0003745154,0.01241038,0.01050418],"study_design_scores_gemma":[0.0122128,0.004876732,0.820258,0.0006700518,0.0005156927,0.001232377,0.0002216089,0.0001450761,0.04217523,0.0005533499,0.1161288,0.001010344],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861194,0.007699863,0.0001004553,0.00165768,0.002412966,0.0004194749,0.00002138733,0.00005430901,0.00151446],"genre_scores_gemma":[0.9922825,0.001639187,0.0001255534,0.0006739487,0.0002906281,0.00001290505,0.00004111026,0.00007297913,0.004861156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9107847,"threshold_uncertainty_score":0.999832,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2809353278","doi":"10.1159/000489863","title":"Spleen Tyrosine Kinase as a Target Therapy for &lt;b&gt;&lt;i&gt;Pseudomonas aeruginosa&lt;/i&gt;&lt;/b&gt; Infection","year":2018,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"Saudi Arabian Cultural Bureau","keywords":"Syk; Immune system; Immunology; Tyrosine kinase; Spleen; Pseudomonas aeruginosa; Biology; Signal transduction; Cystic fibrosis; Cancer research; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.04036776956682776,"gpt":0.3595592234303005,"spread":0.3191914538634728,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.005929728,0.001633995,0.00534316,0.002098633,0.0008308833,0.000365675,0.001560661,0.001076098,0.0009779969],"category_scores_gemma":[0.006963318,0.001229694,0.002790812,0.001930011,0.0008796955,0.001035359,0.0004910902,0.003260557,0.0002948861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001724616,"about_ca_system_score_gemma":0.003205437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007136086,"about_ca_topic_score_gemma":0.0000905619,"domain_scores_codex":[0.9894918,0.0017172,0.003762652,0.000874468,0.002447033,0.001706891],"domain_scores_gemma":[0.9870181,0.002017818,0.004060813,0.001932841,0.003854853,0.001115583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.008303623,0.004777808,0.00009930497,0.02847728,0.006416002,0.0009439774,0.0006197162,0.0000230848,0.1064489,0.0007728399,0.103524,0.7395934],"study_design_scores_gemma":[0.00571179,0.00701936,0.0007004153,0.0198385,0.001272328,0.002605417,0.00001202552,0.00003751721,0.001899995,0.0007117813,0.9591933,0.0009975765],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01348392,0.9768159,0.000838049,0.0006428513,0.002296322,0.003924912,0.0004930736,0.0001383128,0.001366618],"genre_scores_gemma":[0.002736638,0.9858128,0.005607012,0.0002370645,0.002909384,0.0002665556,0.0006715114,0.0003109342,0.001448081],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8556693,"threshold_uncertainty_score":0.9999353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969765019","doi":"10.1159/000348739","title":"Limited Role of the Receptor for Advanced Glycation End Products during &lt;b&gt;&lt;i&gt;Streptococcus pneumoniae&lt;/i&gt;&lt;/b&gt; Bacteremia","year":2013,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Advanced Glycation End Products research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Universität Heidelberg; Landsteiner Foundation for Blood Transfusion Research","keywords":"Rage (emotion); Streptococcus pneumoniae; Sepsis; Inflammation; Proinflammatory cytokine; Immunology; Receptor; Glycation; Medicine; Biology; Internal medicine; Microbiology; Antibiotics","retraction":null,"screen_n_in":null,"score":{"opus":0.01057877324364141,"gpt":0.2583726914879522,"spread":0.2477939182443107,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009962558,0.0003756482,0.0004721361,0.0002234683,0.0003925165,0.00007291472,0.001100291,0.0002717576,0.0001138066],"category_scores_gemma":[0.00277516,0.0003003231,0.0002715463,0.0005763537,0.000269226,0.0001294142,0.0003764149,0.0005918305,0.00001745628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001811575,"about_ca_system_score_gemma":0.0004494018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004633896,"about_ca_topic_score_gemma":0.00001908248,"domain_scores_codex":[0.9967995,0.0004530278,0.001110287,0.0004574935,0.0005812996,0.0005984388],"domain_scores_gemma":[0.9942378,0.00011335,0.00138555,0.001284579,0.002791242,0.0001874843],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004595362,0.0002537871,0.0003686267,0.0001399851,0.000156663,7.432087e-7,0.0002404255,0.0003939288,0.9838343,0.00007189838,0.0008805731,0.01319954],"study_design_scores_gemma":[0.001382841,0.0004892581,0.02710364,0.0001352317,0.00003662977,0.00003770617,0.00007871088,0.00004262379,0.8767805,0.0002646577,0.09335571,0.0002925208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927179,0.00299396,0.0001998932,0.001738713,0.0005091585,0.001303095,0.00006554955,0.00001798876,0.0004538095],"genre_scores_gemma":[0.9935157,0.001540949,0.002233135,0.00006242684,0.0005093803,0.0001106236,0.000124083,0.00007351224,0.001830219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1070538,"threshold_uncertainty_score":0.9999449,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4406499169","doi":"10.1159/000543608","title":"RNA Viruses, Toll-Like Receptors, and Cytokines: The Perfect Storm?","year":2025,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Queen's University; Fondation pour la Recherche Médicale; J.P. Bickell Foundation","keywords":"RNA; Innate immune system; Biology; Storm; Virology; Computational biology; Immunology; Immune system; Genetics; Geography; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.1080091037064822,"gpt":0.4184887417394436,"spread":0.3104796380329614,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.003156561,0.0005147705,0.002670143,0.0006879637,0.0004877835,0.00009370974,0.0006775295,0.0003097017,0.0001010254],"category_scores_gemma":[0.003273247,0.0002646738,0.0008102554,0.00072046,0.0003959579,0.0001699521,0.0005783698,0.003827131,0.00001996301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005188364,"about_ca_system_score_gemma":0.001653363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001532891,"about_ca_topic_score_gemma":0.00002234813,"domain_scores_codex":[0.9960537,0.001185214,0.001366906,0.0001917832,0.0007767404,0.0004256444],"domain_scores_gemma":[0.9957499,0.001544371,0.001055924,0.000700367,0.0007764383,0.0001730185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002836505,0.00015452,0.00009588606,0.01959544,0.002342523,0.0001515968,0.0004386581,2.695201e-7,0.00001840872,0.00002445837,0.03036002,0.9465346],"study_design_scores_gemma":[0.0007325662,0.0004728221,0.0001562291,0.02850822,0.001589542,0.0006297614,0.0002126867,4.042587e-7,0.00001284405,0.00001427379,0.9674755,0.0001950897],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005538157,0.9957332,0.000003885516,0.000256778,0.00107356,0.0007418127,0.00002938224,0.00001771597,0.001589839],"genre_scores_gemma":[0.00005145326,0.9976211,0.000101917,0.0005287291,0.0004443884,0.00002189628,0.000006744369,0.00004262385,0.001181173],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9463395,"threshold_uncertainty_score":0.9999806,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2128729472","doi":"10.1159/000332435","title":"The Role of Complement in the Development and Manifestation of Murine Atherogenic Inflammation: Novel Avenues","year":2011,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Atherosclerosis and Cardiovascular Diseases","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"University of Leicester; British Heart Foundation","keywords":"Inflammation; Complement system; Immune system; Immunology; Disease; Adipose tissue; Biology; Complement (music); Medicine; Pathology; Gene; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.04889997249660824,"gpt":0.2828852273748309,"spread":0.2339852548782227,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001818863,0.0001417641,0.0006401642,0.00008232152,0.0001141126,0.000008811598,0.0003933232,0.00009555255,0.00001451136],"category_scores_gemma":[0.00005351601,0.00007404542,0.0003109167,0.00009588785,0.0001414153,0.00004394628,0.00008882153,0.0003319904,0.000002081174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003220767,"about_ca_system_score_gemma":0.00015809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002804822,"about_ca_topic_score_gemma":0.00002221204,"domain_scores_codex":[0.9981427,0.0006318508,0.0009901753,0.00005730403,0.00007195055,0.0001060829],"domain_scores_gemma":[0.9980973,0.0001991951,0.001318079,0.0002321552,0.0001451408,0.000008122839],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004186728,0.0001633201,0.0001608318,0.0007796384,0.001229281,6.823213e-7,0.003017988,7.355245e-7,0.0006028431,0.0006528183,0.000008811629,0.9933412],"study_design_scores_gemma":[0.0007347803,0.000146099,0.01478488,0.003611831,0.000655521,0.000150888,0.002261173,1.332796e-7,0.002045565,0.0001480625,0.9753335,0.0001275567],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.09690877,0.9027137,0.000008846619,0.000005055238,0.00007332622,0.0002054397,0.00001646941,0.000001034515,0.00006734406],"genre_scores_gemma":[0.07979997,0.9200907,0.00004270611,0.000002499501,0.00001492989,0.00001128119,0.00002219269,0.000008683152,0.000007080812],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9932137,"threshold_uncertainty_score":0.3019485,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010295052","doi":"10.1159/000225990","title":"Toll-Like Receptor 2-Independent and MyD88-Dependent Gene Expression in the Mouse Brain","year":2009,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Alzheimer Society","keywords":"TLR2; Innate immune system; Biology; TLR4; Toll-like receptor; Receptor; CD14; Microglia; Immune receptor; Chemokine; Immune system; Signal transduction; Cell biology; Lipopolysaccharide; Molecular biology; Immunology; Inflammation; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01085492468172179,"gpt":0.2454488136818637,"spread":0.234593889000142,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002475203,0.0001476202,0.0002680086,0.0002294311,0.0002017484,0.0000413591,0.0003964208,0.0002025433,0.0001120688],"category_scores_gemma":[0.0002327469,0.00009527463,0.0000862342,0.0001153731,0.00006606069,0.0003139387,0.00006151199,0.0009178661,0.00003214534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006372571,"about_ca_system_score_gemma":0.00006550101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002988309,"about_ca_topic_score_gemma":0.000007879808,"domain_scores_codex":[0.9977573,0.001178619,0.0006361618,0.00009557251,0.0001028057,0.0002296112],"domain_scores_gemma":[0.9989801,0.0002206954,0.000403613,0.0002724746,0.000104527,0.00001856344],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008439141,0.0001852899,0.0002484903,0.000004290814,0.00003190287,0.00002018784,0.002342168,0.00001048616,0.9854988,0.00004440142,0.002739026,0.008031085],"study_design_scores_gemma":[0.00236704,0.0006691745,0.0346834,0.00007411445,0.00001555962,0.0008070367,0.001778252,0.000001930746,0.946382,0.0002049629,0.01287173,0.0001448279],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932988,0.003421777,0.00009337085,0.002495288,0.0003158924,0.0001458453,0.000002854447,0.000008819884,0.0002173873],"genre_scores_gemma":[0.9976615,0.0008595311,0.0001037632,0.0006798283,0.00003545577,0.000002131527,0.00001508695,0.000006910484,0.0006358359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03911679,"threshold_uncertainty_score":0.3987722,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058195223","doi":"10.1159/000335900","title":"Pattern Recognition Receptors in Immune Disorders Affecting the Skin","year":2012,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pattern recognition receptor; Immune system; Immunology; Psoriasis; Atopic dermatitis; Receptor; Pathogen-associated molecular pattern; Innate immune system; Pathophysiology; Biology; Medicine; Genetics; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.04604534659295218,"gpt":0.3323559256173869,"spread":0.2863105790244347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001883625,0.0002944533,0.001478939,0.0004155656,0.0001298338,0.0000211885,0.0003201239,0.0003174379,0.0002354142],"category_scores_gemma":[0.0006028161,0.0001723992,0.0007758491,0.0003995019,0.0001220351,0.0001804744,0.00008766841,0.002400839,0.00005732792],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001436572,"about_ca_system_score_gemma":0.0002221937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007255164,"about_ca_topic_score_gemma":0.00002664799,"domain_scores_codex":[0.9968233,0.001361498,0.001198699,0.00009416534,0.000228786,0.0002935746],"domain_scores_gemma":[0.9973583,0.0007238432,0.001382167,0.0003275247,0.0001126715,0.00009548626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000460914,0.0003088992,0.001632891,0.003668888,0.0002860154,0.00004022327,0.0002935021,1.178153e-7,3.316042e-7,1.971766e-7,0.000415681,0.9933072],"study_design_scores_gemma":[0.00144433,0.00018863,0.0144457,0.04350457,0.003290306,0.003893345,0.0008899131,0.000001362135,0.00001160404,0.0001274174,0.9317994,0.0004034228],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007766493,0.9897497,0.00001005531,0.000198535,0.001134574,0.000409596,0.000006504405,0.000009750477,0.0007147814],"genre_scores_gemma":[0.03517935,0.9643621,0.00002207316,0.00007779351,0.0002293373,0.00001174489,0.00005227979,0.00003667231,0.00002858531],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9929037,"threshold_uncertainty_score":0.9999006,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}