{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":41,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":41,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"95db5a6f7e4e","filters":{"venue":"Journal of Structural and Functional Genomics"}},"results":[{"id":"W1767701883","doi":"10.1023/a:1011320027914","title":"Calmodulin Target Database","year":2000,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":548,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Medical Research Council; Howard Hughes Medical Institute","keywords":"Calmodulin; Calcium-binding protein; Computational biology; Biology; Subclass; Protein structure; Calcium; Biochemistry; Genetics; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.009679894184016628,"gpt":0.2152136371239609,"spread":0.2055337429399442,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009381465,0.00007485834,0.00008696142,0.00002639759,0.0000732252,0.00001637466,0.00004290042,0.00004857628,0.0004619433],"category_scores_gemma":[0.00001251531,0.00005868652,0.00005832476,0.00002787093,0.00004087283,0.00000826803,0.00001744954,0.0000777858,0.000003004178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009851759,"about_ca_system_score_gemma":0.00005118236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002088907,"about_ca_topic_score_gemma":6.537241e-7,"domain_scores_codex":[0.9995204,0.0000159485,0.0001944101,0.00009267667,0.00009384748,0.00008267436],"domain_scores_gemma":[0.9996967,0.000004061946,0.00008474612,0.00006216205,0.00007160636,0.00008072908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001021861,0.00001549584,0.001403793,0.0000155973,0.00009083727,0.00001499538,0.00002947063,0.006122677,0.9598226,0.0003600699,0.001482019,0.02962058],"study_design_scores_gemma":[0.004735053,0.001007113,0.08161319,0.00005249797,0.0001086025,0.004686469,0.0001393227,0.004606328,0.2696043,0.00752779,0.6251308,0.0007885481],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964125,0.001950936,0.001126715,0.0001372492,0.0001409337,0.00003365256,0.00002512049,0.000001620468,0.0001713217],"genre_scores_gemma":[0.9929162,0.0002174917,0.005143822,0.0002452264,0.0008781681,4.747185e-7,0.00006337246,0.000006923387,0.0005283683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6902183,"threshold_uncertainty_score":0.5057955,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048205675","doi":"10.1007/s10969-007-9027-2","title":"The scientific impact of the Structural Genomics Consortium: a protein family and ligand-centered approach to medically-relevant human proteins","year":2007,"lang":"en","type":"review","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Knut och Alice Wallenbergs Stiftelse; Karolinska Institutet; Wellcome Trust; VINNOVA; Stiftelsen för Strategisk Forskning; Canadian Institutes of Health Research; Genome Canada; Ontario Innovation Trust","keywords":"Structural genomics; Computational biology; Genomics; Biology; Protein family; Human proteins; Proteomics; Protein structure; Genome; Gene; Data science; Genetics; Computer science; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.04995671217368679,"gpt":0.2998952348970853,"spread":0.2499385227233985,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001212993,0.0005096969,0.001143573,0.000224706,0.001097087,0.000412945,0.0005852524,0.00028813,0.00002105291],"category_scores_gemma":[0.0001311326,0.0002283975,0.000582306,0.0003254925,0.0009351087,0.0001785114,0.000313106,0.000777225,0.00000166196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003551895,"about_ca_system_score_gemma":0.0008673131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003488251,"about_ca_topic_score_gemma":0.00001596049,"domain_scores_codex":[0.9966051,0.0001754755,0.001556031,0.0004576631,0.0007583973,0.0004473625],"domain_scores_gemma":[0.9970076,0.0001348112,0.001761047,0.0003771616,0.0004261883,0.0002931693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001872063,0.00008426177,0.0002810929,0.006066108,0.001688042,0.00002003055,0.001589387,0.0003999862,0.5096936,0.00601775,0.001952023,0.4703356],"study_design_scores_gemma":[0.006570128,0.004305041,0.04675674,0.008772718,0.004460847,0.01487389,0.001341936,0.0003609837,0.006743866,0.02012784,0.8818318,0.00385421],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.6080619,0.388849,0.0001194781,0.00003174587,0.001610647,0.001103043,0.0001623266,0.000007509728,0.00005442142],"genre_scores_gemma":[0.4552371,0.5248087,0.00987282,0.0002533855,0.007685953,0.000106089,0.0001779101,0.0003144646,0.00154358],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8798798,"threshold_uncertainty_score":0.9313782,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964082988","doi":"10.1007/s10969-009-9071-1","title":"Structural genomics target selection for the New York consortium on membrane protein structure","year":2009,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"Genentech; National Institutes of Health; National Institute of General Medical Sciences; Magyar Tudományos Akadémia; Broad Institute; York University; University of Wisconsin-Madison","keywords":"Structural genomics; Transmembrane protein; Computational biology; Pipeline (software); Transmembrane domain; Biology; Genome; Membrane protein; Genomics; Selection (genetic algorithm); Protein structure; Bioinformatics; Genetics; Computer science; Gene; Biochemistry; Artificial intelligence; Membrane","retraction":null,"screen_n_in":null,"score":{"opus":0.009241040380548059,"gpt":0.2125520499586274,"spread":0.2033110095780794,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001250807,0.000276451,0.0002649307,0.00006628887,0.0003420234,0.00008554842,0.0001977167,0.0002151634,0.00003452217],"category_scores_gemma":[0.00006655859,0.0001779697,0.0001902643,0.00008371132,0.00008586327,0.00001835705,0.00002997611,0.0003211823,3.748036e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006788779,"about_ca_system_score_gemma":0.0002812774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006653122,"about_ca_topic_score_gemma":0.00001339556,"domain_scores_codex":[0.9987861,0.00002748912,0.0004443286,0.0002649603,0.000210056,0.0002670873],"domain_scores_gemma":[0.9990287,0.00003117085,0.0004197626,0.0001585863,0.0002116078,0.0001501666],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003414827,0.000006613126,0.0002820806,0.00001743565,0.0002369478,0.000001317425,0.00007587928,0.01986226,0.9573257,0.003412744,0.002374021,0.01299019],"study_design_scores_gemma":[0.00989332,0.008217176,0.06419173,0.00006408175,0.0005270119,0.004268938,0.0003985186,0.01666938,0.5966498,0.1330012,0.164338,0.001780778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905299,0.00147661,0.00551545,0.001094079,0.000787763,0.0004622423,0.00008874741,0.000007154504,0.00003803798],"genre_scores_gemma":[0.9851063,0.00005440167,0.0104636,0.0008703571,0.002989423,0.000002482811,0.00007382114,0.00002177435,0.0004178466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3606758,"threshold_uncertainty_score":0.7257392,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2030909614","doi":"10.1007/s10969-005-1363-5","title":"High-throughput production of prokaryotic membrane proteins","year":2005,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto","funders":"Canada Research Chairs; Ontario Genomics Institute; Genome Canada","keywords":"Escherichia coli; Membrane protein; Biology; Transmembrane protein; Thermophile; Biochemistry; Thermotoga maritima; Integral membrane protein; Membrane; Gene; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.00960853867886387,"gpt":0.2026747040315827,"spread":0.1930661653527188,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001712856,0.0001027734,0.0001622982,0.00004414807,0.00006247644,0.00001072949,0.00006586948,0.00007861085,0.0000377088],"category_scores_gemma":[0.00004779004,0.00007703721,0.00007690432,0.0000386123,0.00005901274,0.00001542461,0.00003027677,0.00007952192,0.000001075254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001756257,"about_ca_system_score_gemma":0.00007278906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004042328,"about_ca_topic_score_gemma":0.000003062497,"domain_scores_codex":[0.9992735,0.00002659435,0.0003247424,0.0001308431,0.0001460492,0.00009829836],"domain_scores_gemma":[0.9993731,0.000006062416,0.0003018987,0.00009236636,0.0001743334,0.00005226144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004401489,0.00001522849,0.0002104073,0.00002648545,0.00007345156,6.775033e-7,0.00002922888,0.001211739,0.987138,0.0004220965,0.0001231302,0.01030945],"study_design_scores_gemma":[0.0004617821,0.0004750023,0.006901112,0.00001685939,0.00003879882,0.0004587737,0.00003783123,0.00002368715,0.9847737,0.001393731,0.005306869,0.0001118541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968581,0.0008817644,0.0009600459,0.0005674346,0.0005559033,0.0001369357,0.000005773162,0.000001898695,0.00003218856],"genre_scores_gemma":[0.9833324,0.0002249938,0.01433865,0.00005699928,0.001634725,0.000002347643,0.000008605647,0.000009939962,0.0003913645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01352568,"threshold_uncertainty_score":0.3141486,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005913854","doi":"10.1007/s10969-009-9076-9","title":"Protein crystallization analysis on the World Community Grid","year":2010,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"National Institutes of Health; National Institute of General Medical Sciences; Conquer Cancer Foundation","keywords":"Crystallization; Protein crystallization; Throughput; Computer science; Grid; Random forest; Set (abstract data type); Image (mathematics); Artificial intelligence; Pattern recognition (psychology); Mathematics; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.009274677604603711,"gpt":0.2299166385770392,"spread":0.2206419609724355,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003006029,0.00008159327,0.000113114,0.0001106143,0.0001881074,0.00004307452,0.000114527,0.00004786419,0.00007979786],"category_scores_gemma":[0.0000618476,0.00005012399,0.0001398984,0.0001677642,0.00007848896,0.000006710673,0.00004970452,0.0003497573,4.252688e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000103918,"about_ca_system_score_gemma":0.00002699642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001174168,"about_ca_topic_score_gemma":0.0002409063,"domain_scores_codex":[0.9994861,0.00005968601,0.0002031141,0.00007234591,0.0001119427,0.00006682239],"domain_scores_gemma":[0.999384,0.00002517109,0.0002070993,0.0001679109,0.0001753662,0.00004037905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001172766,0.00001271473,0.002118346,0.000002387948,0.0003304002,6.456936e-7,0.00001722497,0.0002761484,0.9949979,0.0004914253,0.001029134,0.0006063622],"study_design_scores_gemma":[0.0006397194,0.0006255564,0.2044503,0.00001117817,0.0008461359,0.0001574587,0.0002465986,0.00108387,0.7203551,0.005526921,0.06567059,0.0003865732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979104,0.00004380366,0.001279489,0.0002701319,0.00005606096,0.00005278329,0.000004390414,0.000002409503,0.0003805687],"genre_scores_gemma":[0.9978477,0.00001814662,0.000955825,0.0002572439,0.0004265811,0.000001429839,0.00004033766,0.000005471286,0.0004472991],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2746429,"threshold_uncertainty_score":0.2043997,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142745444","doi":"10.1007/s10969-011-9107-1","title":"Crystal structure of secretory protein Hcp3 from Pseudomonas aeruginosa","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; Structural Genomics Consortium; University of Toronto","funders":"Argonne National Laboratory; National Institute of General Medical Sciences","keywords":"Pseudomonas aeruginosa; Type VI secretion system; Biology; Secretion; Microbiology; Effector; Virulence; Flagellum; Cell envelope; Bacteria; Peptide sequence; Cell biology; Genetics; Gene; Biochemistry; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.01597394300057982,"gpt":0.2133369682488456,"spread":0.1973630252482658,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005884227,0.0001299539,0.0002002784,0.00004833967,0.00006710454,0.00001192744,0.0001075017,0.00009536352,0.0001526947],"category_scores_gemma":[0.00004422868,0.00009653594,0.00009584852,0.00003312068,0.0001634465,0.00001278589,0.0001152588,0.0001505248,3.539962e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002015299,"about_ca_system_score_gemma":0.0001166966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003159207,"about_ca_topic_score_gemma":0.00001467461,"domain_scores_codex":[0.9992142,0.00003262986,0.0003035263,0.0001400038,0.0001727421,0.000136936],"domain_scores_gemma":[0.9992954,0.000009422647,0.0002689516,0.00009950308,0.0002360773,0.00009065463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009494059,0.00000747179,0.004745561,0.00001560856,0.0002225884,0.000004208396,0.0001392197,0.00001137093,0.993102,0.00008308883,0.0001482537,0.0005711865],"study_design_scores_gemma":[0.001257309,0.0007674286,0.385952,0.00002231342,0.00005178486,0.0002106491,0.0003576153,0.00001578308,0.6044935,0.004141022,0.002520183,0.000210415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981745,0.001053501,0.0001612626,0.00003195958,0.0002566492,0.00007990159,0.0001653445,0.000001527928,0.00007528798],"genre_scores_gemma":[0.995498,0.00009753817,0.003641414,0.00002890306,0.0006268859,6.522882e-7,0.00003504748,0.000009976104,0.00006155387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3886085,"threshold_uncertainty_score":0.3936621,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006446553","doi":"10.1007/s10969-005-5243-9","title":"Automatic Classification and Pattern Discovery in High-throughput Protein Crystallization Trials","year":2005,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Crystallization; Protein crystallization; Throughput; Identification (biology); Computer science; Data mining; Process (computing); Pattern recognition (psychology); Artificial intelligence; Biology; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02730069024820226,"gpt":0.268737495241601,"spread":0.2414368049933988,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019546,0.0000994262,0.0002208036,0.00005693531,0.00006999409,0.00006052291,0.00004812402,0.00007290778,0.00007354377],"category_scores_gemma":[0.000043414,0.00007808075,0.00004068209,0.00004827033,0.00004235453,0.0003689757,0.00002498125,0.0001628888,3.908929e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001164542,"about_ca_system_score_gemma":0.00003818688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007360357,"about_ca_topic_score_gemma":0.00000633525,"domain_scores_codex":[0.999094,0.00001684478,0.0005769443,0.0001199799,0.0001072762,0.00008492907],"domain_scores_gemma":[0.9992755,0.00005597141,0.0004971359,0.00006911276,0.00005998784,0.00004228904],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00013896,0.00002910089,0.004560307,0.00008942271,0.00003934967,0.000001466656,0.0001286851,0.0009508109,0.8687559,0.007331341,0.00004482426,0.1179299],"study_design_scores_gemma":[0.009903496,0.0003829186,0.3331287,0.000659258,0.0003002407,0.001221478,0.00123446,0.1085218,0.2254322,0.3036174,0.0140581,0.001540042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9614514,0.0002307568,0.03739271,0.0007114173,0.00002832621,0.0001176433,0.00002383982,0.00001021291,0.00003367114],"genre_scores_gemma":[0.9766712,0.0001891892,0.02258734,0.00004700982,0.0003698484,0.00001359581,0.00002220054,0.00000937611,0.00009028027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6433237,"threshold_uncertainty_score":0.318404,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089640001","doi":"10.1007/s10969-006-9008-x","title":"Crystal Structure of the Vitamin B12 Biosynthetic Cobaltochelatase, CbiXS, from Archaeoglobus Fulgidus","year":2006,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University of Alberta","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council","keywords":"Cobalamin; Tetrapyrrole; Biosynthesis; Histidine; Biochemistry; Lyase; Chemistry; Biology; Stereochemistry; Enzyme; Vitamin B12","retraction":null,"screen_n_in":null,"score":{"opus":0.003711808630004722,"gpt":0.1777039404000492,"spread":0.1739921317700444,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005314963,0.0001387224,0.0001798515,0.00003500934,0.00008894265,0.00001576819,0.0001535205,0.0001041774,0.00004437814],"category_scores_gemma":[0.00002707319,0.00008837591,0.0001376498,0.00005954961,0.0002092218,0.000008955254,0.00009428583,0.0001347971,2.865961e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001153919,"about_ca_system_score_gemma":0.00009343006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006905329,"about_ca_topic_score_gemma":0.00004022196,"domain_scores_codex":[0.9991663,0.00003359932,0.00033833,0.0001429894,0.0001850827,0.0001337429],"domain_scores_gemma":[0.9993494,0.00001655567,0.0003259041,0.0001428598,0.0001091564,0.00005611351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002966817,0.00001190332,0.009884372,0.000008682171,0.00007201156,0.000001343483,0.00002108126,0.0009812126,0.9864874,0.000427993,0.001023128,0.0007842248],"study_design_scores_gemma":[0.001950317,0.0001947021,0.7964789,0.00001834846,0.0001618095,0.0004644693,0.000219733,0.00007335674,0.1602572,0.02046229,0.01943049,0.0002884611],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947343,0.003444153,0.0002690647,0.0001155902,0.0007373744,0.00005950953,0.0005856602,0.000001260294,0.00005303555],"genre_scores_gemma":[0.9980952,0.00009713478,0.0008641497,0.00009790902,0.0006725458,2.575665e-7,0.0000936934,0.000008895362,0.00007026997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8262302,"threshold_uncertainty_score":0.3603865,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1513446941","doi":"10.1023/a:1021261026670","title":"Role for NMR in structural genomics","year":2002,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Cancer Care Ontario; University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences","keywords":"Structural genomics; Genomics; National laboratory; Functional genomics; Computational biology; Biology; Engineering; Genetics; Genome; Engineering physics; Biochemistry; Protein structure; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01320816260975611,"gpt":0.208270843179337,"spread":0.1950626805695809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001210482,0.0001236688,0.0001686594,0.00005963488,0.00008224976,0.00002861425,0.00009234148,0.0001082866,0.00006488896],"category_scores_gemma":[0.00003473077,0.0000997551,0.0001061412,0.00003216707,0.0000371533,0.00001117144,0.00003360318,0.00008998501,0.000001017057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003261087,"about_ca_system_score_gemma":0.00002968147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002773631,"about_ca_topic_score_gemma":0.000006586809,"domain_scores_codex":[0.9992805,0.00001912298,0.0003105768,0.0001424108,0.00008848337,0.0001589225],"domain_scores_gemma":[0.999557,0.00001943241,0.000183228,0.00007672061,0.0000894963,0.00007410067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004659772,0.00000658624,0.00144365,0.00001300848,0.0000618736,0.000002035056,0.00009357966,0.0009429936,0.976875,0.0006168387,0.000219302,0.01925916],"study_design_scores_gemma":[0.01181263,0.004275952,0.1678783,0.00007471707,0.0002411216,0.004546291,0.00151648,0.01759387,0.5211424,0.08572109,0.1832362,0.001960906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957231,0.002949609,0.0006013555,0.0001657199,0.00032055,0.0001121552,0.00002514454,0.000001498299,0.0001008452],"genre_scores_gemma":[0.9933487,0.0002954715,0.005064296,0.0001537106,0.0008540227,0.000003161779,0.00001234117,0.00001408062,0.00025425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4557326,"threshold_uncertainty_score":0.4067895,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1820111519","doi":"10.1023/a:1024674220425","title":"Solution structure of the yeast ubiquitin-like modifier protein Hub1","year":2003,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":30,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium; University of Toronto; Ontario Institute for Cancer Research","funders":"Pacific Northwest National Laboratory; Battelle; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; U.S. Department of Energy","keywords":"Saccharomyces cerevisiae; Nuclear Overhauser effect; Two-dimensional nuclear magnetic resonance spectroscopy; Nuclear magnetic resonance spectroscopy; Yeast; Ubiquitin; Chemistry; Spectroscopy; Structural genomics; Nuclear magnetic resonance; Biochemistry; Protein structure; Stereochemistry; Physics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01214096336600776,"gpt":0.1974269621573619,"spread":0.1852859987913541,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000169799,0.0001404295,0.0002052225,0.00005746477,0.0002038195,0.00003805646,0.0001166528,0.00009946292,0.0003804876],"category_scores_gemma":[0.00005441981,0.00008276096,0.0001107249,0.0001066191,0.0001543518,0.000214397,0.00003718675,0.0002313315,0.00000149991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006300766,"about_ca_system_score_gemma":0.0001289905,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009298875,"about_ca_topic_score_gemma":0.00001012555,"domain_scores_codex":[0.9988787,0.00007282594,0.0004230553,0.0001361035,0.0003283811,0.0001609027],"domain_scores_gemma":[0.999043,0.00001996623,0.0004997042,0.0001243179,0.0002451572,0.00006781617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000151026,0.000004429393,0.0005862896,0.00002108525,0.00002052998,7.883049e-7,0.0001161068,0.0008553225,0.9924772,0.004967905,0.0002805306,0.0005187189],"study_design_scores_gemma":[0.001464733,0.0003001091,0.0665063,0.00005613058,0.0001243666,0.001512846,0.0003375579,0.0001887226,0.8605316,0.06092377,0.007746127,0.0003077302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961594,0.0003205159,0.0006874207,0.0001046687,0.002368834,0.0001118827,0.0000410837,0.00000468347,0.000201542],"genre_scores_gemma":[0.9976451,0.000007390104,0.001600372,0.00009960446,0.0004167579,5.611828e-7,0.000002281257,0.0000094504,0.0002184183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1319457,"threshold_uncertainty_score":0.4166072,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075697623","doi":"10.1007/s10969-005-9001-9","title":"Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate","year":2005,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":26,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Basic Energy Sciences; National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Cofactor; Bacillus subtilis; Enzyme; Biochemistry; Dehydrogenase; Transferase; Phosphate; Acetyl-CoA; Oxidoreductase; Substrate (aquarium); Binding site; Stereochemistry; Isocitrate dehydrogenase; Active site; Chemistry; Biology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01523062973118646,"gpt":0.2050213339898427,"spread":0.1897907042586563,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001083546,0.0002168858,0.0003743935,0.0000737122,0.000151745,0.0000601045,0.0001003427,0.00009076845,0.001032469],"category_scores_gemma":[0.00001432364,0.0001445198,0.00007189022,0.00008054401,0.0001751161,0.0004175432,0.00003447574,0.0001960996,0.000001551549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004960457,"about_ca_system_score_gemma":0.00007982106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004401054,"about_ca_topic_score_gemma":0.00005825235,"domain_scores_codex":[0.9987559,0.00002758883,0.0004803792,0.0002164771,0.0003289131,0.0001907905],"domain_scores_gemma":[0.9989922,0.00006912734,0.0004379097,0.00009070406,0.0002539777,0.0001560503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002363774,0.000009384415,0.0008130657,0.00002965779,0.0001069925,0.000006695826,0.0005633692,0.002556923,0.9889192,0.0006482092,0.000165022,0.003817735],"study_design_scores_gemma":[0.00717114,0.001903337,0.2068749,0.000067048,0.0004547274,0.002280826,0.0009685516,0.002776855,0.7639157,0.005492114,0.007377285,0.0007175568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957591,0.002763811,0.0005023346,0.0001917013,0.0004178695,0.00008385604,0.0002149106,0.000009182499,0.00005718952],"genre_scores_gemma":[0.9928244,0.0001904353,0.006232949,0.0001473236,0.0005312518,6.71044e-7,0.00001531305,0.00001457405,0.00004306993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2250035,"threshold_uncertainty_score":0.9998807,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989259734","doi":"10.1007/s10969-012-9127-5","title":"Crystal structure of a putative isochorismatase hydrolase from Oleispira antarctica","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; University of Chicago","keywords":"Hydrolase; Structural genomics; Crystal structure; Chemistry; Biology; Crystallography; Protein structure; Enzyme; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.008212539600205014,"gpt":0.2149180216217118,"spread":0.2067054820215068,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005319844,0.00009766964,0.0001336061,0.0000395435,0.00005191205,0.00001182927,0.0000438602,0.00007561065,0.00006938229],"category_scores_gemma":[0.00003248976,0.00007709421,0.00006269132,0.00003897156,0.00006268453,0.00002713213,0.00003425323,0.0001082774,4.525177e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001511304,"about_ca_system_score_gemma":0.00003946256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005770761,"about_ca_topic_score_gemma":8.545701e-7,"domain_scores_codex":[0.9994039,0.00002685708,0.0002641468,0.00009450674,0.000111239,0.0000993793],"domain_scores_gemma":[0.9993893,0.000009651841,0.0002954334,0.00006616318,0.0001470182,0.00009245743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004174919,0.00001413694,0.008829606,0.000008792866,0.00009980093,4.164243e-7,0.0001926097,0.0001079841,0.9895094,0.00005775753,0.0001734636,0.0005885322],"study_design_scores_gemma":[0.001073357,0.0003464386,0.2005419,0.000008266442,0.0001008388,0.000419492,0.0004338639,0.00007242901,0.7874842,0.0009145825,0.008413118,0.0001915406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971671,0.000908186,0.0008555245,0.0001212162,0.0005686648,0.00003803311,0.0003317185,0.000001331414,0.000008229757],"genre_scores_gemma":[0.9966584,0.00009881565,0.001387952,0.0001253504,0.00140362,2.377779e-7,0.000293075,0.000008207753,0.00002432503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2020252,"threshold_uncertainty_score":0.314381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090727546","doi":"10.1007/s10969-011-9115-1","title":"Solution NMR structure of MED25(391–543) comprising the activator-interacting domain (ACID) of human mediator subunit 25","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Transactivation; Heteronuclear molecule; Protein subunit; Activator (genetics); Biology; Mediator; Protein structure; Cell biology; Protein domain; Heteronuclear single quantum coherence spectroscopy; Molecular biology; Gene; Biochemistry; Transcription factor; Chemistry; Nuclear magnetic resonance spectroscopy; Stereochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03355596472384254,"gpt":0.260084532259546,"spread":0.2265285675357034,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001439888,0.0001388821,0.0003318526,0.0001286757,0.0001884794,0.00001024892,0.00006067067,0.00008407758,0.0003551354],"category_scores_gemma":[0.00003619003,0.00008272749,0.0001438498,0.0001029774,0.0001485437,0.0001592443,0.00003605971,0.0003256639,5.985958e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001034335,"about_ca_system_score_gemma":0.00009512121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008969309,"about_ca_topic_score_gemma":0.00002002508,"domain_scores_codex":[0.9989463,0.0000452003,0.0005454252,0.00009785879,0.0002372477,0.000127935],"domain_scores_gemma":[0.9987391,0.00007639858,0.0007033329,0.0001084846,0.0002792941,0.00009340508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002155851,0.0001770269,0.1163336,0.0001639605,0.001923039,0.00002930833,0.005512991,0.00007332797,0.8457734,0.0029181,0.0001785628,0.02476083],"study_design_scores_gemma":[0.00500979,0.001480624,0.8088897,0.0002654841,0.0008091361,0.00291847,0.004473487,0.0002841047,0.1637239,0.009639002,0.00222758,0.0002786717],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983503,0.0003404248,0.0003345259,0.00007373059,0.0005089256,0.00009849748,0.00002729358,0.000004070922,0.0002622002],"genre_scores_gemma":[0.997358,0.00003295212,0.002184578,0.00003284798,0.0003493759,3.304124e-7,0.000009289416,0.00001195039,0.00002065598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6925561,"threshold_uncertainty_score":0.3888484,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988950201","doi":"10.1007/s10969-005-5277-z","title":"NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure","year":2005,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":23,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Science Foundation","keywords":"Thermotoga maritima; Consensus sequence; Sequence motif; Multiple sequence alignment; Structural genomics; Sequence alignment; Conserved sequence; Protein structure; Biology; Protein tertiary structure; Peptide sequence; Protein family; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.008369195511052585,"gpt":0.2012453206444952,"spread":0.1928761251334426,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002365831,0.0003389223,0.0005096084,0.0001999851,0.0002501566,0.00008365313,0.0002265046,0.0002544752,0.001588879],"category_scores_gemma":[0.00006973444,0.0002438845,0.0001958953,0.0001565293,0.0002174783,0.000678578,0.00009521093,0.0004648588,0.000003804603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001548634,"about_ca_system_score_gemma":0.000151359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002497151,"about_ca_topic_score_gemma":0.00003203277,"domain_scores_codex":[0.9977461,0.0001021051,0.0009341309,0.000322349,0.0005599521,0.0003354243],"domain_scores_gemma":[0.9979276,0.00004735018,0.001201275,0.0002180465,0.0004239754,0.0001817423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006630351,0.00001215266,0.001040887,0.00007930244,0.0000751085,0.000006080179,0.0001790968,0.001098563,0.9900743,0.0005940839,0.0003796177,0.005797748],"study_design_scores_gemma":[0.004188165,0.001036384,0.323732,0.000217533,0.0004288495,0.004585301,0.0003406906,0.001345092,0.6077192,0.04942599,0.005915025,0.001065762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961982,0.00106253,0.000729877,0.0003630107,0.0009980041,0.0003190404,0.0002483103,0.00001942618,0.00006155884],"genre_scores_gemma":[0.9834431,0.00002482206,0.01424795,0.0002918373,0.001727346,0.000001960062,0.00003023554,0.00002770248,0.000205051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3823551,"threshold_uncertainty_score":0.9993238,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1779770448","doi":"10.1023/a:1011348803324","title":"NMR Structure Determination and Structure-Based Functional Characterization of Conserved Hypothetical Protein MTH1175 from Methanobacterium thermoautotrophicum","year":2000,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":22,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Thermotoga maritima; Methanobacterium; Structural genomics; Biology; Ribonuclease; Hyperthermophile; Protein family; Peptide sequence; Conserved sequence; Nuclear magnetic resonance spectroscopy; Protein structure; Biochemistry; Bacteria; Sequence alignment; Gene; Archaea; Genetics; Stereochemistry; Chemistry; RNA; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.01070408822593991,"gpt":0.1914339520148308,"spread":0.1807298637888909,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001474453,0.0002825272,0.0004309338,0.0001420235,0.0001854436,0.0001013954,0.0001090875,0.0002203522,0.003744994],"category_scores_gemma":[0.00003915197,0.0002111792,0.0001021325,0.0001174355,0.0002751272,0.0004389306,0.00002905454,0.000281833,0.000001920155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000068981,"about_ca_system_score_gemma":0.0001417967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002079765,"about_ca_topic_score_gemma":0.000009636185,"domain_scores_codex":[0.9982106,0.0001253918,0.0007202798,0.0003073172,0.0004285371,0.0002078367],"domain_scores_gemma":[0.9986798,0.00009434428,0.000607024,0.0001455507,0.000332365,0.000140951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001526125,0.00001069992,0.0007732678,0.00003384198,0.000038382,0.000003684883,0.00009316778,0.0004216791,0.9889098,0.000204634,0.000007501448,0.007977149],"study_design_scores_gemma":[0.001987639,0.0004322171,0.4825209,0.00005324884,0.0001569555,0.0003538819,0.00003720764,0.002901454,0.5012292,0.009515472,0.0004848044,0.0003270129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969905,0.000148677,0.001141632,0.0002455287,0.0007189241,0.0001878974,0.0005320576,0.00001550382,0.00001925218],"genre_scores_gemma":[0.9950776,0.00001874095,0.003720917,0.0001771376,0.0007575192,0.000002019506,0.0001568094,0.00002296268,0.00006635958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4876807,"threshold_uncertainty_score":0.9971657,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002288604","doi":"10.1007/s10969-011-9114-2","title":"The success of structural genomics","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Structural genomics; Genomics; Computational biology; Genome Biology; Functional genomics; Data science; Biology; Computer science; Genome; Genetics; Protein structure; Gene; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02123889985687482,"gpt":0.2436565838520834,"spread":0.2224176839952086,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002766573,0.0001193109,0.0001618833,0.00004759598,0.0001649602,0.00002980401,0.0002410167,0.0001054674,0.00003273736],"category_scores_gemma":[0.00008452436,0.00006998496,0.0001171064,0.00004784963,0.0003860746,0.0000106639,0.0001339773,0.0001662183,0.000001019293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002116814,"about_ca_system_score_gemma":0.0001709206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001211389,"about_ca_topic_score_gemma":0.00001318504,"domain_scores_codex":[0.9989292,0.00002556153,0.0004995947,0.00009790433,0.0002486571,0.0001990733],"domain_scores_gemma":[0.9990276,0.00002921428,0.0003311012,0.0001299959,0.0003406774,0.0001413953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005938906,0.00005651568,0.06156302,0.0002235747,0.001269252,0.00001423962,0.001670098,0.0002641345,0.7729087,0.003445545,0.00352964,0.1491164],"study_design_scores_gemma":[0.002795599,0.002699892,0.7598562,0.00002780807,0.0001374936,0.001235898,0.001964619,0.001292587,0.1693478,0.01417385,0.04590948,0.0005588345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969019,0.001630293,0.000306521,0.0001088848,0.0006584225,0.00006546873,0.00002425328,0.000001096014,0.0003031232],"genre_scores_gemma":[0.9960812,0.001194991,0.00191906,0.00007204874,0.0005333431,5.398416e-7,0.0000136074,0.000008259287,0.0001768897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6982931,"threshold_uncertainty_score":0.2853904,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999196452","doi":"10.1007/s10969-010-9083-x","title":"Efficient condensed-phase production of perdeuterated soluble and membrane proteins","year":2010,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; U.S. Public Health Service","keywords":"Membrane protein; Membrane; Escherichia coli; Chemistry; Protein structure; Biochemistry; Biophysics; Crystallography; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.006285261081451179,"gpt":0.2215642121615335,"spread":0.2152789510800823,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001284107,0.0001031789,0.0001490782,0.00004812485,0.00008133677,0.00001818684,0.00004526017,0.00009828725,0.00001331307],"category_scores_gemma":[0.00005208504,0.00007758244,0.00004858903,0.00003927357,0.0001392148,0.00000597412,0.00004032572,0.000170805,1.269644e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000633236,"about_ca_system_score_gemma":0.00008178023,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003253171,"about_ca_topic_score_gemma":0.000006164581,"domain_scores_codex":[0.999383,0.00001369769,0.0002625805,0.0001356545,0.0001096502,0.00009535727],"domain_scores_gemma":[0.9993558,0.000005938039,0.0002278914,0.00008527962,0.0002525548,0.00007255512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005916427,0.00001689156,0.0003467587,0.00002553052,0.00005616832,0.00000166181,0.00004792277,0.0007567159,0.9957501,0.0002662826,0.00004027183,0.002100053],"study_design_scores_gemma":[0.004546342,0.001737283,0.02281988,0.00002586762,0.0001430371,0.004652128,0.000187179,0.006009503,0.9520555,0.00205065,0.005367455,0.0004052018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979835,0.0003796353,0.0004477704,0.0001440511,0.0008873872,0.0001206916,0.00001182529,0.000001785816,0.00002337157],"genre_scores_gemma":[0.9960836,0.00004955221,0.003154456,0.00003549083,0.0005402492,0.00000111303,0.00001673215,0.000007656842,0.0001111448],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04369463,"threshold_uncertainty_score":0.316372,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031800434","doi":"10.1007/s10969-005-9004-6","title":"The crystal structure of Rv0793, a hypothetical monooxygenase from M.␣tuberculosis","year":2006,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Lawrence Berkeley National Laboratory","keywords":"Mycobacterium tuberculosis; Tuberculosis; Polyketide; Biology; Streptomyces coelicolor; Microbiology; Oxidoreductase; Open reading frame; Bacteria; Computational biology; Function (biology); Escherichia coli; Monooxygenase; Structural genomics; Genetics; Protein structure; Gene; Streptomyces; Biochemistry; Peptide sequence; Biosynthesis; Cytochrome P450; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.005991765149452562,"gpt":0.2057240224097127,"spread":0.1997322572602601,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006554293,0.0001121787,0.0001385154,0.00002465538,0.0001099046,0.00003016073,0.0001220065,0.0001143133,0.00002562108],"category_scores_gemma":[0.00003930844,0.00006736706,0.0001346006,0.00004318086,0.0002138923,0.000004768746,0.00008442454,0.0001670753,3.218646e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001451637,"about_ca_system_score_gemma":0.00006926578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003692846,"about_ca_topic_score_gemma":0.00001670872,"domain_scores_codex":[0.9991677,0.00003124862,0.0003109987,0.0001326891,0.0002089803,0.0001483567],"domain_scores_gemma":[0.9994407,0.00003389873,0.0001534282,0.0001118007,0.0001800042,0.00008012414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005171832,0.00001014986,0.0008024313,0.000005197792,0.00009256,0.000002198197,0.00000636468,0.0001275637,0.9958279,0.0004456576,0.0007676585,0.001395161],"study_design_scores_gemma":[0.001108507,0.000366787,0.04447492,0.000009423872,0.00006583981,0.0003485017,0.00007261254,0.000141987,0.9094081,0.02472032,0.01909438,0.0001886045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956,0.003374117,0.0003478651,0.0003210264,0.0001580954,0.00004835157,0.0000935286,0.000001058489,0.0000559216],"genre_scores_gemma":[0.9978766,0.0001890545,0.00107836,0.00006054862,0.0006590721,4.26649e-7,0.00004553481,0.000009673567,0.00008070753],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08641975,"threshold_uncertainty_score":0.2747149,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108076107","doi":"10.1007/s10969-008-9041-z","title":"Structure of an acetyl-CoA binding protein from Staphylococcus aureus representing a novel subfamily of GCN5-related N-acetyltransferase-like proteins","year":2008,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Battelle; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; U.S. Department of Energy","keywords":"Subfamily; Biology; Acetyltransferases; Cysteine; Acetyltransferase; Biochemistry; Residue (chemistry); Transferase; Stereochemistry; Enzyme; Acetylation; Chemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01702220829124329,"gpt":0.2103631739380425,"spread":0.1933409656467992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002255449,0.0002867233,0.0005876676,0.0002177883,0.0002652586,0.00003717063,0.0002302835,0.0002224067,0.0003100368],"category_scores_gemma":[0.00006358589,0.0002198447,0.0001837019,0.0002493049,0.0002971556,0.0005916799,0.00006237688,0.0004256783,7.73966e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007246567,"about_ca_system_score_gemma":0.0002160264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001765817,"about_ca_topic_score_gemma":0.00003388597,"domain_scores_codex":[0.9976287,0.00007632827,0.001106359,0.0003393673,0.0005728071,0.0002764646],"domain_scores_gemma":[0.9980332,0.00006646187,0.001051128,0.0002367379,0.0004487164,0.0001638058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008829876,0.00002810166,0.002017201,0.00005411313,0.0001112341,0.00001126532,0.0006316805,0.001790831,0.9939318,0.0002072167,0.00002486121,0.0003087365],"study_design_scores_gemma":[0.002195597,0.0006669227,0.04812055,0.00008652151,0.0001031558,0.0004048288,0.0004636108,0.0003193939,0.9453762,0.001884796,0.00009490753,0.000283555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969741,0.0003523091,0.0007431777,0.00003643969,0.0009988038,0.0003156679,0.0005326206,0.0000167047,0.00003018942],"genre_scores_gemma":[0.9879014,0.00002489858,0.01144265,0.00002329408,0.0004704421,0.000001741606,0.00004982851,0.00002651819,0.00005921534],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04855561,"threshold_uncertainty_score":0.8965006,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159028403","doi":"10.1007/s10969-009-9064-0","title":"Unique opportunities for NMR methods in structural genomics","year":2009,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Structural Genomics Consortium","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Structural genomics; Structural biology; Genomics; Computational biology; Protein structure; Biology; Biochemistry; Genome; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02975699021587422,"gpt":0.2929266165796197,"spread":0.2631696263637455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002699815,0.0001806606,0.0002568959,0.0001045262,0.00009573523,0.00003843367,0.0001239493,0.0001643132,0.000007979406],"category_scores_gemma":[0.00005261629,0.0001460497,0.0001333019,0.00004633052,0.00007300993,0.00001942466,0.00003854456,0.0001773911,6.20371e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005771288,"about_ca_system_score_gemma":0.0001827977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003020687,"about_ca_topic_score_gemma":0.000007650312,"domain_scores_codex":[0.9990423,0.00004638336,0.0004480454,0.000172938,0.00009050772,0.0001998779],"domain_scores_gemma":[0.9993045,0.00002970604,0.0002722782,0.0001069679,0.0001807606,0.0001058382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.002373482,0.00001294483,0.001583279,0.00004024455,0.0001663823,0.00001707809,0.0001804209,0.005128802,0.8340833,0.01159161,0.0004137,0.1444087],"study_design_scores_gemma":[0.0105296,0.00616271,0.3223817,0.00007828935,0.0003133088,0.006894378,0.002272147,0.01493702,0.1166035,0.4004456,0.1171893,0.002192485],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9779037,0.001596418,0.01927048,0.0004962825,0.0004045408,0.0001535693,0.00004129938,0.000003130929,0.0001305536],"genre_scores_gemma":[0.8967323,0.0004457521,0.1008251,0.0007892373,0.0009214442,0.000002375922,0.00007261677,0.00001620651,0.0001950071],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7174799,"threshold_uncertainty_score":0.5955735,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2067847540","doi":"10.1007/s10969-009-9067-x","title":"Independently inducible system of gene expression for condensed single protein production (cSPP) suitable for high efficiency isotope enrichment","year":2009,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; U.S. Public Health Service","keywords":"Chemistry; Protein biosynthesis; lac operon; Structural genomics; Biochemistry; Isotope; Stable isotope ratio; Gene expression; Gene; Protein structure","retraction":null,"screen_n_in":null,"score":{"opus":0.0199076804562507,"gpt":0.2518646028660169,"spread":0.2319569224097662,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003709663,0.0001206356,0.000195223,0.00008317101,0.0001317982,0.00002335758,0.00009918186,0.0001112446,0.000005939516],"category_scores_gemma":[0.00005218657,0.00009444789,0.00009176762,0.00005701679,0.00003729204,0.00001488756,0.0000198927,0.00008784848,1.825645e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007285167,"about_ca_system_score_gemma":0.0001455785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002005645,"about_ca_topic_score_gemma":0.000001403372,"domain_scores_codex":[0.9989986,0.00002945013,0.0003759662,0.0002084197,0.0002064898,0.000181088],"domain_scores_gemma":[0.9989827,0.00001172361,0.0003328297,0.0001199596,0.0004835048,0.00006932587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006603457,0.00004857883,0.0000531829,0.00006030007,0.00004925775,4.255944e-7,0.00003878607,0.00149048,0.9899902,0.00006526265,0.0001273229,0.001472721],"study_design_scores_gemma":[0.001621474,0.006345448,0.0008451156,0.00002635613,0.00002187144,0.00007929718,0.0001287797,0.00008095513,0.9899654,0.0004122168,0.0003677787,0.0001052858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945996,0.0008547555,0.003378063,0.0001569524,0.0003261423,0.0006317687,0.00003955672,0.000002767784,0.00001036052],"genre_scores_gemma":[0.9949576,0.00001737045,0.004006987,0.00003352343,0.000656023,0.00001492385,0.0000436978,0.00001134769,0.0002584982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006296869,"threshold_uncertainty_score":0.3851473,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088061860","doi":"10.1007/s10969-012-9136-4","title":"Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"Brookhaven National Laboratory; National Institute of General Medical Sciences","keywords":"Allosteric regulation; GTP'; Enzyme; Chemistry; Second messenger system; Domain (mathematical analysis); Crystallography; Stereochemistry; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.005926118764505403,"gpt":0.1911535854210796,"spread":0.1852274666565742,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006866972,0.0002053686,0.0002722744,0.00004606269,0.0001241015,0.00003463504,0.00008143557,0.0001236683,0.0000475777],"category_scores_gemma":[0.00001834218,0.0001392168,0.00009573608,0.00004820369,0.0001801262,0.0000405137,0.0001433989,0.0001970458,3.814499e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003349032,"about_ca_system_score_gemma":0.0001040679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003942014,"about_ca_topic_score_gemma":0.00002767063,"domain_scores_codex":[0.9990124,0.00003080449,0.0003490539,0.0001901832,0.0001781365,0.0002394747],"domain_scores_gemma":[0.9991223,0.00001626288,0.0003768544,0.0001382877,0.0001787285,0.000167581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002666876,0.00001914905,0.01191808,0.00001291648,0.0002861734,0.000003574125,0.000183702,0.00003268122,0.9831377,0.00007443037,0.00004209816,0.00162264],"study_design_scores_gemma":[0.001667057,0.0005785985,0.5424215,0.00002794369,0.0001621776,0.00111768,0.000219821,0.0000106416,0.4497129,0.0006181605,0.003124768,0.0003387643],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985003,0.0004180507,0.00008140563,0.0001067963,0.000551591,0.00008516866,0.0002101445,0.00000207694,0.00004445001],"genre_scores_gemma":[0.9957902,0.00003575,0.002207072,0.00007944823,0.001684262,2.299491e-7,0.0001374413,0.00001851709,0.00004704613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5334247,"threshold_uncertainty_score":0.5677097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011850983","doi":"10.1007/s10969-012-9123-9","title":"Canadian macromolecular crystallography facility: a suite of fully automated beamlines","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":15,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Canadian Light Source (Canada); University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Saskatchewan","keywords":"Beamline; Automation; Undulator; Suite; Computer science; Engineering; Physics; Optics; Beam (structure); Mechanical engineering; Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.008762474943783394,"gpt":0.2042243243349998,"spread":0.1954618493912164,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002663888,0.0001360652,0.0002388273,0.0002061422,0.0001281758,0.00003466845,0.00008441235,0.00009024181,0.0003086244],"category_scores_gemma":[0.00003327183,0.0001011323,0.0001147193,0.0001344522,0.00009970243,0.0002970832,0.00002458961,0.0001296205,0.00000308839],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008011072,"about_ca_system_score_gemma":0.0001539481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001224655,"about_ca_topic_score_gemma":0.0005821066,"domain_scores_codex":[0.9989576,0.00003461228,0.0004268583,0.0001026975,0.0002205645,0.0002576412],"domain_scores_gemma":[0.9990605,0.00003043696,0.0002953263,0.00008490746,0.0002613033,0.0002675091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002150658,0.000008487978,0.02122175,0.00003892759,0.00007350445,0.000006345303,0.0002856514,0.0005120001,0.9756011,0.0004627818,0.000650469,0.0009238613],"study_design_scores_gemma":[0.00207315,0.000743381,0.8539196,0.00004796895,0.0003609945,0.003997575,0.0008477005,0.000688259,0.1013295,0.005674264,0.02958261,0.0007350438],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967584,0.001132786,0.0002548169,0.0001152276,0.001430235,0.00005713869,0.0001421156,0.00001537399,0.00009390544],"genre_scores_gemma":[0.9978455,0.00002455396,0.001549366,0.0001258511,0.0003981231,5.492281e-7,0.00001800368,0.000006433099,0.00003158296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8742717,"threshold_uncertainty_score":0.4124055,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996739157","doi":"10.1007/s10969-010-9095-6","title":"Fully automated high-quality NMR structure determination of small 2H-enriched proteins","year":2010,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; U.S. Public Health Service; National Institutes of Health","keywords":"Structural genomics; Crystal structure; Chemistry; Crystallography; Protein structure; Protonation; High resolution; Nuclear magnetic resonance spectroscopy; Stereochemistry; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.00765917538408818,"gpt":0.2310563185159668,"spread":0.2233971431318786,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001736782,0.0001753652,0.0002541493,0.00007647876,0.00009124743,0.00002783664,0.000140313,0.0002537388,0.00003030872],"category_scores_gemma":[0.0001109646,0.0001344434,0.0001094537,0.00007134036,0.0001272089,0.00001598976,0.00007095272,0.0003016501,2.221605e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001854677,"about_ca_system_score_gemma":0.0001531908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001740323,"about_ca_topic_score_gemma":0.00006764194,"domain_scores_codex":[0.9989344,0.0000388641,0.0005140885,0.0001793727,0.0001835792,0.0001496932],"domain_scores_gemma":[0.9986843,0.00001837003,0.0006092976,0.0001574832,0.0004309869,0.00009954171],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004335368,0.000008694353,0.002287226,0.00003597286,0.0000598301,0.000002198792,0.00003192,0.0002194151,0.9893278,0.00110376,0.00002389517,0.006465779],"study_design_scores_gemma":[0.002802877,0.001036978,0.6984507,0.00001632588,0.0001318839,0.001408727,0.0000937983,0.002763634,0.2659859,0.02522095,0.001548719,0.000539473],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947064,0.0001700907,0.004152763,0.00008745945,0.0006234742,0.0001388961,0.00008436784,0.000008628402,0.00002792069],"genre_scores_gemma":[0.9701082,0.00002393803,0.02899712,0.00007616707,0.0006480534,0.000001258848,0.00008225461,0.00001377214,0.00004924377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7233419,"threshold_uncertainty_score":0.5482442,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1589570762","doi":"10.1023/a:1026156025612","title":"Coverage of protein sequence space by current structural genomics targets","year":2003,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":13,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Structural genomics; Protein Data Bank (RCSB PDB); Proteome; Computational biology; Protein superfamily; Homology (biology); Biology; Protein Data Bank; Homologous chromosome; Genome; Cluster analysis; Proteomics; Genetics; Protein structure; Computer science; Gene; Biochemistry; Artificial intelligence","retraction":null,"screen_n_in":null,"score":{"opus":0.01503592279387621,"gpt":0.2281130281210093,"spread":0.213077105327133,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002798285,0.0002369982,0.0003730705,0.00009064058,0.0001843254,0.00006519064,0.0001390757,0.00009852081,0.0004040542],"category_scores_gemma":[0.00007842104,0.0001778497,0.000123301,0.0001075876,0.0001745189,0.0003888603,0.00003956146,0.0003090268,0.000003730679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001617428,"about_ca_system_score_gemma":0.0001846696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001141638,"about_ca_topic_score_gemma":0.000002079255,"domain_scores_codex":[0.9984174,0.00007625591,0.0006455854,0.0002330259,0.0003692324,0.0002584419],"domain_scores_gemma":[0.9986385,0.00004670967,0.0007425194,0.0001148392,0.000299673,0.0001577557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002902031,0.000007483204,0.0008202189,0.00005267447,0.00003122685,0.000004646365,0.0001455413,0.0009503902,0.9904155,0.004498009,0.0003713691,0.002412807],"study_design_scores_gemma":[0.003316471,0.0009800347,0.021645,0.00009221066,0.000176513,0.002737361,0.0003448401,0.000478942,0.8603922,0.06441714,0.04452027,0.000899029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918141,0.004028867,0.001744803,0.00006146766,0.001867547,0.0001508487,0.0001324847,0.000008440724,0.0001914607],"genre_scores_gemma":[0.9954467,0.000215034,0.003775519,0.00004693294,0.0003758161,0.000001479991,0.00001282882,0.00001642269,0.0001092001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1300232,"threshold_uncertainty_score":0.7252498,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084106291","doi":"10.1007/s10969-010-9093-8","title":"Engineering of a wheat germ expression system to provide compatibility with a high throughput pET-based cloning platform","year":2010,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences","keywords":"Wheat germ; Structural genomics; Biology; Cloning (programming); Expression vector; Escherichia coli; Computational biology; Fusion protein; Cell-free protein synthesis; Protein biosynthesis; Biochemistry; Cell biology; Gene; Protein structure; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.005906233445938529,"gpt":0.2055329259827113,"spread":0.1996266925367728,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009158552,0.0001255278,0.0001809557,0.00004955238,0.00008780902,0.00002363712,0.00006855129,0.00005726144,0.00001377267],"category_scores_gemma":[0.00002861226,0.00008440681,0.00007491781,0.00004436155,0.00003715485,0.000013806,0.0000452879,0.0001503256,2.619444e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002379401,"about_ca_system_score_gemma":0.0001192447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002201888,"about_ca_topic_score_gemma":0.00001186241,"domain_scores_codex":[0.9992887,0.000009532161,0.0002865911,0.0001533775,0.0001471604,0.0001146665],"domain_scores_gemma":[0.9993092,0.0000182409,0.0002223071,0.0001238713,0.0001981113,0.0001282887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001044552,0.00001464917,0.00468921,0.00008812945,0.00003727841,0.00000399321,0.00002799047,0.01923916,0.9744149,0.0001106535,0.0001099059,0.000219529],"study_design_scores_gemma":[0.00258775,0.001985534,0.09073003,0.0002441234,0.00008035884,0.001035629,0.0002188562,0.003333142,0.8970905,0.0001109349,0.002190995,0.0003921535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972773,0.00008681433,0.001961803,0.00003008225,0.0004870024,0.0001042283,0.00002564103,0.000004629332,0.00002251576],"genre_scores_gemma":[0.9927223,0.000003493169,0.006785191,0.00004687012,0.000403804,0.000003037741,0.00001374865,0.00001097912,0.00001053437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08604082,"threshold_uncertainty_score":0.344201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W426015217","doi":"10.1023/b:jsfg.0000029244.65028.71","title":"2003 NIH Protein Structure Initiative Workshop in Protein Production and Crystallization for Structural and Functional Genomics","year":2004,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":11,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences","keywords":"Structural genomics; Genomics; Functional genomics; Crystallization; Computational biology; Biology; Protein structure; Genetics; Genome; Engineering; Biochemistry; Gene; Chemical engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.01934834248250878,"gpt":0.2237616078554712,"spread":0.2044132653729624,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002979841,0.0003317755,0.0003941951,0.0002506815,0.000390353,0.0001781836,0.00007544641,0.0002222795,0.0001097952],"category_scores_gemma":[0.000350739,0.000265535,0.00005681836,0.000258369,0.0002466896,0.0007722055,0.00006332702,0.0003829181,5.019261e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002582836,"about_ca_system_score_gemma":0.0003009769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001831957,"about_ca_topic_score_gemma":0.0001351255,"domain_scores_codex":[0.9981568,0.00005837101,0.0007052269,0.0004495456,0.0003186058,0.0003114752],"domain_scores_gemma":[0.998394,0.00004058292,0.0005915233,0.0001097947,0.0007111544,0.0001529946],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001969642,0.0000116971,0.0007022535,0.0001288366,0.00005463859,0.000005022613,0.0008543653,0.008455876,0.9818102,0.003877762,0.0001611489,0.001968591],"study_design_scores_gemma":[0.01447027,0.002522487,0.250551,0.0006832603,0.000404815,0.005396996,0.006114906,0.002543102,0.3929774,0.3181088,0.003885957,0.002340951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921803,0.0008515911,0.004014919,0.0006619713,0.001283299,0.0008721529,0.0001027421,0.00001645214,0.00001660797],"genre_scores_gemma":[0.9856588,0.00006031475,0.01263083,0.0001492377,0.001287048,0.00001921814,0.00005577566,0.00002897097,0.000109762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5888327,"threshold_uncertainty_score":0.9999797,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W171658374","doi":"10.1023/a:1021352716284","title":"The cadherin superfamily database","year":2002,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Wnt/β-catenin signaling in development and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"SUPERFAMILY; Biology; Computational biology; Cadherin; Annotation; Protein family; Bioinformatics; Database; Genetics; Computer science; Cell; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01727630489704733,"gpt":0.2037212034538535,"spread":0.1864448985568061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001082844,0.0000752928,0.00006813749,0.00001468602,0.0001704527,0.00003360135,0.00008579469,0.00004026186,0.00007239373],"category_scores_gemma":[0.00001923886,0.00004593058,0.00004778165,0.00002763025,0.00007222478,0.000006697396,0.00004326567,0.00009317449,0.000002645113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001437264,"about_ca_system_score_gemma":0.00003005763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001768757,"about_ca_topic_score_gemma":0.000002388447,"domain_scores_codex":[0.9995112,0.0000128002,0.0001857447,0.00008116808,0.0001076007,0.000101483],"domain_scores_gemma":[0.9996791,0.00001416021,0.00009299257,0.00006522876,0.00009641468,0.00005203172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003915425,0.000008399667,0.006346366,0.000008488562,0.0001867126,0.000006479862,0.00008806196,0.0002487169,0.9464564,0.0002708212,0.03049316,0.01549484],"study_design_scores_gemma":[0.002133619,0.000568872,0.07889637,0.00002112632,0.00007894188,0.001539932,0.0004709311,0.0007248737,0.06985785,0.001225862,0.8440077,0.0004739098],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912052,0.007456343,0.0001360456,0.0003070771,0.0006566883,0.00002517951,0.000007552712,0.00000125033,0.0002046775],"genre_scores_gemma":[0.9943352,0.002404332,0.0005941344,0.0002147042,0.0008779753,8.830666e-7,0.00001053743,0.000007211905,0.001554981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8765985,"threshold_uncertainty_score":0.1872995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146732641","doi":"10.1007/s10969-011-9122-2","title":"Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":8,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; Office of Science; National Institutes of Health","keywords":"Protein structure; Structural similarity; Protein domain; Sequence alignment; Protein family; Structural genomics; Biology; Crystallography; Heteronuclear single quantum coherence spectroscopy; Residue (chemistry); Peptide sequence; Nuclear magnetic resonance spectroscopy; Chemistry; Computational biology; Biochemistry; Stereochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.0213062867397274,"gpt":0.2111061734187596,"spread":0.1897998866790322,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002915917,0.0003248068,0.0004034682,0.0001543548,0.0005289739,0.0001192064,0.0001578027,0.0001812834,0.0001048783],"category_scores_gemma":[0.00008605374,0.0002231056,0.0001369148,0.00008712992,0.0002808445,0.0003418757,0.00008276699,0.0003209932,8.228041e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008902515,"about_ca_system_score_gemma":0.000112745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000547641,"about_ca_topic_score_gemma":0.00006430982,"domain_scores_codex":[0.9983083,0.00005610198,0.0006238641,0.0003572654,0.0003112913,0.0003431977],"domain_scores_gemma":[0.9987517,0.00006676448,0.0005915944,0.0001442815,0.0002488985,0.0001967583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.005381844,0.0000182667,0.001988512,0.0003292616,0.0001432857,0.00001635253,0.002089721,0.0002855119,0.959007,0.01610165,0.001171875,0.01346677],"study_design_scores_gemma":[0.003247366,0.001462109,0.3663048,0.0000810525,0.0002248508,0.00231648,0.0007037811,0.0001920529,0.02980421,0.5858498,0.009077296,0.0007362828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853428,0.0009594885,0.01172415,0.000226156,0.001032134,0.0004523874,0.0001268973,0.00002307734,0.0001129081],"genre_scores_gemma":[0.9562236,0.0000163074,0.04219117,0.0001370638,0.001287748,0.00001226148,0.00001812195,0.00002675906,0.00008696332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9292027,"threshold_uncertainty_score":0.9097981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4234286444","doi":"10.1007/s10969-004-3789-6","title":"Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: a new type of helical super-bundle","year":2004,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Structural Genomics Consortium; University Health Network","funders":"Argonne National Laboratory","keywords":"Thermoplasma acidophilum; Antiparallel (mathematics); Coiled coil; Crystallography; Protein structure; Crystal structure; Biology; Sequence (biology); Stereochemistry; Chemistry; Biophysics; Biochemistry; Physics; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.01000816057753302,"gpt":0.2028944263541377,"spread":0.1928862657766047,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003850016,0.000115818,0.0001919655,0.00002428477,0.00004565798,0.00000959613,0.0001391013,0.000115584,0.00006345523],"category_scores_gemma":[0.00005107244,0.00007099516,0.0001290242,0.00005872984,0.0001660657,0.000008349941,0.00007222412,0.0001399984,2.833392e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009933658,"about_ca_system_score_gemma":0.000254329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003505627,"about_ca_topic_score_gemma":0.00001175386,"domain_scores_codex":[0.9992743,0.00002286534,0.0003039961,0.0001162145,0.0001780897,0.0001045527],"domain_scores_gemma":[0.9994535,0.000008323771,0.000211672,0.000121329,0.0001241884,0.00008097492],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000672414,0.00001916054,0.0017816,0.000007849092,0.00007961646,4.820249e-7,0.00005094904,0.0006144142,0.9955189,0.000709492,0.00006380612,0.0004812928],"study_design_scores_gemma":[0.003672271,0.0008834896,0.2100228,0.00003477992,0.0001256297,0.0003781863,0.0002405025,0.00001833839,0.7245833,0.05609816,0.003690179,0.0002523941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977689,0.001332786,0.0001930816,0.0002364463,0.0002798859,0.00007590502,0.00008021826,8.679585e-7,0.00003195328],"genre_scores_gemma":[0.9974671,0.00006093499,0.001863062,0.00008195164,0.0004555921,1.709021e-7,0.00001301079,0.000009041291,0.00004912684],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2709357,"threshold_uncertainty_score":0.2895099,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165120792","doi":"10.1007/s10969-012-9131-9","title":"Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":7,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Phosphoglycerate kinase; Campylobacter jejuni; Bacillus anthracis; Context (archaeology); Biology; Phosphoglycerate mutase; Protein structure; Biochemistry; Glycolysis; Enzyme; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01499529421127791,"gpt":0.2272977872880978,"spread":0.2123024930768199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001501418,0.0001638306,0.0003020923,0.00008090399,0.0001423963,0.00004836792,0.00006492312,0.00008162123,0.0004248233],"category_scores_gemma":[0.00004524965,0.0001140947,0.00006563658,0.00006659592,0.0002219642,0.000548489,0.00005418916,0.0001599458,0.000001135048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003622126,"about_ca_system_score_gemma":0.00004578525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006025763,"about_ca_topic_score_gemma":0.000004908416,"domain_scores_codex":[0.9989874,0.00004046003,0.0004196809,0.0001323792,0.0002370009,0.0001831095],"domain_scores_gemma":[0.9989918,0.0001252674,0.0004794757,0.00006871457,0.00018982,0.0001449259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001046008,0.00001108721,0.01435391,0.00002550396,0.00008678968,0.000003788191,0.001260702,0.0002757269,0.9760426,0.001752211,0.0001956801,0.004945954],"study_design_scores_gemma":[0.001207913,0.0003620289,0.5943903,0.00001907632,0.0001585189,0.0006623888,0.001404468,0.00008620774,0.3785866,0.02187662,0.0009872604,0.0002586338],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939443,0.003677651,0.0003605906,0.00005719645,0.001648788,0.00004960272,0.000187711,0.000005734261,0.00006845313],"genre_scores_gemma":[0.995078,0.0001433718,0.003740371,0.00007536555,0.0009128127,4.493632e-7,0.00001627746,0.00001009109,0.00002327454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.597456,"threshold_uncertainty_score":0.4652649,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057310817","doi":"10.1007/s10969-012-9130-x","title":"Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":6,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Karolinska Institutet; University of Toronto","keywords":"Human proteome project; Proteome; Structural genomics; Protein Data Bank (RCSB PDB); Computational biology; Protein crystallization; Protein Data Bank; Genomics; Biology; Crystallization; Computer science; Proteomics; Crystallography; Genome; Protein structure; Bioinformatics; Genetics; Chemistry; Gene; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03411956348305664,"gpt":0.2734688761564087,"spread":0.2393493126733521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009365116,0.0001810827,0.000201472,0.0001469345,0.0006120347,0.0001108211,0.00007079028,0.000108632,0.00006095923],"category_scores_gemma":[0.00006706884,0.0001264816,0.00007077729,0.0001134749,0.00005180695,0.0004080191,0.00002307863,0.0001923829,0.00000191089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001929877,"about_ca_system_score_gemma":0.00004401935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001473271,"about_ca_topic_score_gemma":0.000004395135,"domain_scores_codex":[0.9987859,0.00009990156,0.0004596168,0.0002085555,0.0002201252,0.0002259712],"domain_scores_gemma":[0.9989341,0.00013092,0.0004527119,0.00009000316,0.000256402,0.0001358983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007824809,0.00001187085,0.002068634,0.00003962622,0.00003382731,6.604969e-8,0.0007071745,0.009468883,0.9758155,0.0008524117,0.0002467787,0.00997275],"study_design_scores_gemma":[0.006675472,0.004766193,0.4151274,0.0001204108,0.0007467386,0.001031758,0.002066033,0.1026665,0.3646491,0.07110648,0.02969681,0.001347184],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8444427,0.0001241095,0.1532426,0.0002052373,0.001288475,0.0005526118,0.00009792801,0.00001804176,0.00002833167],"genre_scores_gemma":[0.9483458,0.000005369959,0.04918314,0.0002928479,0.00200683,0.00004649539,0.00007665092,0.00001946616,0.00002339384],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6111664,"threshold_uncertainty_score":0.515777,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075773207","doi":"10.1007/s10969-005-3789-1","title":"Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: A new type of helical super-bundle","year":2005,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":6,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium; University of Toronto; University Health Network","funders":"Argonne National Laboratory; National Institute of General Medical Sciences","keywords":"Thermoplasma acidophilum; Crystallography; Bundle; Crystal structure; Type (biology); Chemistry; Biology; Materials science; Biochemistry; Ecology; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.01591051662577374,"gpt":0.2101676422013669,"spread":0.1942571255755931,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008940558,0.0001647049,0.0003166894,0.00005230304,0.00009615095,0.000029455,0.0001978127,0.0001366286,0.001172754],"category_scores_gemma":[0.00006391617,0.00009511577,0.0001378405,0.0001132895,0.0002212872,0.0001922716,0.00007848519,0.0002702442,0.000002473398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005116556,"about_ca_system_score_gemma":0.0002071339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003959655,"about_ca_topic_score_gemma":0.00002684039,"domain_scores_codex":[0.9986836,0.00005155193,0.0005573805,0.0001595491,0.0003909236,0.0001570222],"domain_scores_gemma":[0.9990262,0.00006081616,0.0004224502,0.0001560463,0.0002237422,0.0001107616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007644613,0.00001299274,0.001035555,0.00001183996,0.00003990846,5.540012e-7,0.000185641,0.0006605,0.9947903,0.001076991,0.0002513021,0.001169939],"study_design_scores_gemma":[0.001677197,0.0006683623,0.1029065,0.00005642393,0.0001362113,0.0005919686,0.0001930316,0.0002431059,0.8608953,0.02918852,0.003204211,0.0002390956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977913,0.0004366048,0.0001547105,0.0004964501,0.0008449138,0.0001063159,0.0001016499,0.000004466564,0.00006358355],"genre_scores_gemma":[0.9937151,0.0000115167,0.004664507,0.00009421421,0.001372359,2.17089e-7,0.000004404138,0.00001243344,0.0001252295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.133895,"threshold_uncertainty_score":0.9997403,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969747791","doi":"10.1007/s10969-011-9112-4","title":"Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; University of Chicago","keywords":"TetR; Streptomyces coelicolor; Dimer; Regulator; Repressor; Transcriptional regulation; Biology; DNA; Stereochemistry; Crystallography; Genetics; Chemistry; Streptomyces; Transcription factor; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02503685685513194,"gpt":0.2229415288866055,"spread":0.1979046720314735,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001255976,0.0002473476,0.0005381634,0.000163234,0.0001184583,0.00002638837,0.0001051553,0.0001797227,0.0004134461],"category_scores_gemma":[0.00005884301,0.0001609417,0.0001844277,0.0001352128,0.0003031089,0.0003899688,0.00002922561,0.0003988068,5.673941e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007374788,"about_ca_system_score_gemma":0.0001818864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000130683,"about_ca_topic_score_gemma":0.00001729603,"domain_scores_codex":[0.9983956,0.00005961639,0.0006984069,0.0002774399,0.0003756261,0.0001933706],"domain_scores_gemma":[0.9984599,0.00004375209,0.0005907739,0.0001209744,0.0005553677,0.0002291997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003117251,0.00005538688,0.01311151,0.00004959367,0.0004032089,0.00001294334,0.0009758203,0.00001373686,0.9798215,0.0002466881,0.0001403319,0.002052017],"study_design_scores_gemma":[0.001387502,0.001030914,0.8439434,0.0000751778,0.0003032735,0.0002857853,0.0005953319,0.0000545166,0.147601,0.004310893,0.0002170564,0.0001951662],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971873,0.001116339,0.0000529176,0.0001821089,0.0004213726,0.0002972007,0.0007012162,0.000008623891,0.0000329186],"genre_scores_gemma":[0.9911553,0.00003719638,0.007482328,0.0001988629,0.0009329652,3.458289e-7,0.00008246333,0.00001960868,0.00009095597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8322205,"threshold_uncertainty_score":0.6563011,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994346628","doi":"10.1007/s10969-007-9019-2","title":"Insights into the biology of Escherichia coli through structural proteomics","year":2007,"lang":"en","type":"review","venue":"Journal of Structural and Functional Genomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Queen's University; National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"Structural genomics; Biology; Escherichia coli; Computational biology; Proteomics; Function (biology); Functional genomics; Organism; Genomics; Structural biology; Model organism; Bacterial protein; Genome; Biochemistry; Genetics; Protein structure; Bacteria; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03257521711177249,"gpt":0.2860169434024889,"spread":0.2534417262907164,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002222107,0.0003499531,0.0008649589,0.00007743278,0.000168344,0.00002679744,0.0003157738,0.0004764246,0.00001809653],"category_scores_gemma":[0.00005970293,0.0001921927,0.0004446918,0.000109693,0.0002539432,0.00001100512,0.0001476185,0.0003769314,9.705388e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004481051,"about_ca_system_score_gemma":0.0003445579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001127697,"about_ca_topic_score_gemma":0.000007679727,"domain_scores_codex":[0.9983581,0.0001369732,0.0009094112,0.0002460375,0.0001637593,0.0001857329],"domain_scores_gemma":[0.9981452,0.00007153823,0.001262545,0.0002157458,0.0002294814,0.00007551542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009023331,0.00002239695,0.00004053103,0.002725725,0.002155333,0.00001071894,0.0004820792,0.00005675169,0.2388607,0.009103063,0.0002811251,0.7453593],"study_design_scores_gemma":[0.0003285641,0.0005317479,0.00007258116,0.0002890184,0.0003666301,0.0003493371,0.00007515246,0.000004180426,0.009654809,0.009466328,0.9785507,0.0003110046],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1074844,0.89008,0.0008969196,0.00002729401,0.00110873,0.0003250807,0.00002042339,0.000001750466,0.00005541127],"genre_scores_gemma":[0.007315361,0.9842004,0.006173296,0.00008427756,0.002029778,0.000007163362,0.00006714081,0.00003518776,0.00008737615],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9782695,"threshold_uncertainty_score":0.7837391,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032362701","doi":"10.1007/s10969-011-9117-z","title":"Solution NMR structure of Dsy0195 homodimer from Desulfitobacterium hafniense: first structure representative of the YabP domain family of proteins involved in spore coat assembly","year":2011,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; National Institute of General Medical Sciences; University of Miami; U.S. Department of Energy","keywords":"Protein structure; Heteronuclear single quantum coherence spectroscopy; Biology; Domain (mathematical analysis); Spore; Biochemistry; Protein family; Nuclear magnetic resonance spectroscopy; Chemistry; Crystallography; Cell biology; Stereochemistry; Microbiology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01804347108160921,"gpt":0.2053337360740678,"spread":0.1872902649924586,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008242147,0.0001751976,0.000350412,0.00006005037,0.00007025704,0.000005781621,0.0001810535,0.0001517384,0.00001328666],"category_scores_gemma":[0.0000353732,0.0001176345,0.0001368546,0.00009417824,0.0002814389,0.000006987332,0.0001502403,0.0001647488,3.298418e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002389967,"about_ca_system_score_gemma":0.000133136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002865176,"about_ca_topic_score_gemma":0.0004003232,"domain_scores_codex":[0.9988373,0.000054841,0.0006025159,0.0001865491,0.0001820976,0.0001367329],"domain_scores_gemma":[0.9985754,0.00002248613,0.0008244907,0.0001870334,0.0003451955,0.00004534252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008921032,0.00001694367,0.07911558,0.00002762288,0.0002107349,0.000001009386,0.0009704884,0.0003972636,0.9180894,0.00007447566,0.00005047314,0.0001538648],"study_design_scores_gemma":[0.0007737618,0.0002379621,0.6854303,0.00002525442,0.00004918017,0.00002238312,0.0007809155,0.0000176973,0.308746,0.003738107,0.00008363552,0.00009472247],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973071,0.001497735,0.00007906341,0.0000454717,0.0003657607,0.0001804683,0.0005089497,4.198221e-7,0.00001504705],"genre_scores_gemma":[0.9961205,0.0001758231,0.003445688,0.00002831461,0.0001814106,8.594085e-7,0.00002827905,0.00001130354,0.000007882167],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6093434,"threshold_uncertainty_score":0.4796998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976203775","doi":"10.1007/s10969-012-9134-6","title":"Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences","keywords":"Bacillus subtilis; Structural genomics; Protein family; Biology; Protein domain; Phylogenetic tree; Protein structure; Computational biology; Bacteria; Genetics; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01323672464207436,"gpt":0.215518476558628,"spread":0.2022817519165537,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109029,0.0002175514,0.0002768999,0.00004113933,0.0002637683,0.00003316306,0.00009923081,0.0001037964,0.00001037846],"category_scores_gemma":[0.00002023329,0.0001346298,0.0001181425,0.00003757841,0.0003530223,0.000009194571,0.0002403082,0.0001558204,9.55739e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002100198,"about_ca_system_score_gemma":0.00004683848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007058802,"about_ca_topic_score_gemma":0.00009358209,"domain_scores_codex":[0.9989862,0.00005089346,0.000373693,0.0002082464,0.0001760364,0.0002048807],"domain_scores_gemma":[0.9992119,0.00003761649,0.0003217124,0.0001615392,0.0001386961,0.0001285413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005265025,0.00001258738,0.1717573,0.00001640624,0.0004241545,8.137138e-7,0.0005701361,0.00003705125,0.8238332,0.0002776026,0.0001367535,0.002407549],"study_design_scores_gemma":[0.001070106,0.0002661122,0.9775829,0.00001129299,0.00008646152,0.0001069331,0.001747899,0.00002413101,0.006835359,0.01005285,0.00203691,0.0001790081],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849384,0.01353461,0.0003150956,0.0001635301,0.0006049985,0.0001859095,0.0002229843,9.974256e-7,0.00003351947],"genre_scores_gemma":[0.997457,0.0003398716,0.001465216,0.00006062503,0.0005908928,0.000003931539,0.00001432139,0.00001324897,0.0000548422],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8169978,"threshold_uncertainty_score":0.5490043,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011846385","doi":"10.1007/s10969-014-9189-7","title":"Structural characterization of the putative ABC-type 2 transporter from Thermotoga maritima MSB8","year":2014,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Wellcome Trust; Biological and Environmental Research; National Institutes of Health; University of Chicago","keywords":"Thermotoga maritima; ATP-binding cassette transporter; Efflux; Permease; Biology; Biochemistry; Dimer; Cyclic nucleotide-binding domain; Transporter; Peptide sequence; Chemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.00995485286388935,"gpt":0.1962206333831083,"spread":0.186265780519219,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008198152,0.000120709,0.0002779809,0.00004416329,0.00008996375,0.0000113827,0.00006317989,0.00007140878,0.0001937282],"category_scores_gemma":[0.000008099165,0.00006642475,0.000137016,0.00007427622,0.0001035472,0.000104099,0.000006184521,0.0001989157,5.046927e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002973078,"about_ca_system_score_gemma":0.0000682941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007345413,"about_ca_topic_score_gemma":0.000003486259,"domain_scores_codex":[0.9991499,0.00002136517,0.0003845125,0.0001017757,0.0002438045,0.00009868824],"domain_scores_gemma":[0.9992714,0.00002556122,0.0003242359,0.00007907847,0.0002282317,0.00007149266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002079128,0.00001245394,0.03740483,0.00005587995,0.0002348753,0.000006853405,0.0007785843,0.00008186993,0.9502877,0.0008880444,0.000009758494,0.008160019],"study_design_scores_gemma":[0.001170553,0.0001738092,0.9781097,0.00004752565,0.0001839275,0.000119165,0.0001052167,0.0004350611,0.01458515,0.004556263,0.0004345878,0.00007904303],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974517,0.00009597247,0.0007088179,0.0004618415,0.001045126,0.00009888123,0.00006250817,0.000003659696,0.00007151837],"genre_scores_gemma":[0.9983386,0.00004663703,0.0006272151,0.000231491,0.0005143729,3.371704e-7,0.00007230211,0.0000112477,0.0001578365],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9407049,"threshold_uncertainty_score":0.2708723,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982802055","doi":"10.1007/s10969-011-9121-3","title":"Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771","year":2012,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":2,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; Office of Science; National Institutes of Health","keywords":"Structural genomics; Helix-turn-helix; Dimer; Protein structure; DNA; Biology; DNA-binding domain; Protein family; Sequence motif; Crystallography; Helix (gastropod); Structural motif; Bacteroides thetaiotaomicron; Nuclear magnetic resonance spectroscopy; Chemistry; DNA-binding protein; Stereochemistry; Biochemistry; Genetics; Transcription factor; Gene; Bacteroides","retraction":null,"screen_n_in":null,"score":{"opus":0.01509855014006804,"gpt":0.2160119748883432,"spread":0.2009134247482752,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005209814,0.0003439003,0.0004071207,0.0001612694,0.0006480428,0.0001881869,0.0001340221,0.0002402099,0.00005521371],"category_scores_gemma":[0.00008505044,0.0002522534,0.0001271396,0.0001039474,0.0001790472,0.001359234,0.00007040101,0.0003326051,0.000001378647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001927706,"about_ca_system_score_gemma":0.00008581936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003884533,"about_ca_topic_score_gemma":0.00001906762,"domain_scores_codex":[0.9980575,0.00008800918,0.0007368231,0.0002714481,0.0003893791,0.000456779],"domain_scores_gemma":[0.9984835,0.000080097,0.0007420605,0.0001359326,0.0003076775,0.0002506665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001179767,0.00001168198,0.0007128085,0.0001822935,0.0000599245,0.000001017153,0.0008308141,0.0002722665,0.9868982,0.00307077,0.003899026,0.00288136],"study_design_scores_gemma":[0.01011069,0.002780997,0.2346529,0.0002723118,0.0006821218,0.004404439,0.003033916,0.001517261,0.4549187,0.2236812,0.06165374,0.002291735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.979664,0.002797802,0.01498535,0.0004305785,0.00128713,0.0005763379,0.0002001306,0.00002577331,0.00003289453],"genre_scores_gemma":[0.9800892,0.00006519729,0.0177535,0.0002507957,0.001630006,0.0000182342,0.00006902344,0.00002979228,0.00009424607],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5319795,"threshold_uncertainty_score":0.999993,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028079766","doi":"10.1007/s10969-013-9159-5","title":"Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes","year":2013,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Protochlorophyllide; Structural genomics; Oxidoreductase; Structural biology; Domain (mathematical analysis); Chemistry; Protein structure; Crystallography; Biochemistry; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.007981530459450707,"gpt":0.2199755682864467,"spread":0.2119940378269959,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001414272,0.0002940806,0.0004006684,0.00005929481,0.0003343987,0.0000585936,0.0002317464,0.0001125848,0.00006204452],"category_scores_gemma":[0.00004096016,0.0001873099,0.0001479021,0.00007643852,0.0002977138,0.00006146888,0.0002608038,0.0002263969,1.466217e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004697247,"about_ca_system_score_gemma":0.0001812156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001240735,"about_ca_topic_score_gemma":0.00004747539,"domain_scores_codex":[0.9983686,0.00007547082,0.0006837187,0.0002767286,0.0003262122,0.0002692197],"domain_scores_gemma":[0.99857,0.00002259334,0.0007363417,0.000190339,0.0003596294,0.0001211465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007365247,0.00001291286,0.001401999,0.0001502736,0.0001779064,0.000001515201,0.0002379796,0.0003858607,0.9941984,0.001614265,0.00006821498,0.00101418],"study_design_scores_gemma":[0.00436429,0.001602423,0.1496244,0.0001223644,0.0001229782,0.0007672248,0.001172574,0.0007890448,0.7697638,0.06975582,0.001382334,0.0005327185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962975,0.0005190126,0.0009041908,0.0001904142,0.0002484079,0.001246904,0.0005653932,0.000002635495,0.00002547355],"genre_scores_gemma":[0.9971233,0.00007511825,0.002261569,0.0001501977,0.0002393178,0.00002358377,0.00008283277,0.00001894032,0.00002513043],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2244345,"threshold_uncertainty_score":0.7638277,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972107709","doi":"10.1007/s10969-014-9180-3","title":"The crystal structure of pyrimidine/thiamin biosynthesis precursor-like domain-containing protein CAE31940 from proteobacterium Bordetella bronchiseptica RB50, and evolutionary insight into the NMT1/THI5 family","year":2014,"lang":"en","type":"article","venue":"Journal of Structural and Functional Genomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; University of Chicago; U.S. Department of Energy","keywords":"Biology; Protein domain; Bordetella bronchiseptica; Yeast; Protein family; Biochemistry; Computational biology; Microbiology; Genetics; Bacteria; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.006292172234910668,"gpt":0.1845157919505316,"spread":0.178223619715621,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003904454,0.0002901024,0.0003797367,0.00008384273,0.0008150525,0.0001667867,0.0002629234,0.0001682045,0.0000838818],"category_scores_gemma":[0.0001327619,0.000155132,0.0001185934,0.0001133506,0.0005621655,0.0003280228,0.0001443155,0.0004084767,0.000001310914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009824534,"about_ca_system_score_gemma":0.0001570741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001431595,"about_ca_topic_score_gemma":0.0001019858,"domain_scores_codex":[0.9980673,0.0002046479,0.0007106678,0.0002955773,0.0004526736,0.0002691903],"domain_scores_gemma":[0.9982262,0.0003626097,0.0007491598,0.000231529,0.0002998188,0.0001306474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001238855,0.000005788112,0.0007902952,0.00003106521,0.00008308477,0.000001376452,0.001334482,0.0001196558,0.9914967,0.001429691,0.0001327782,0.003336247],"study_design_scores_gemma":[0.003790455,0.002813811,0.488756,0.0002949297,0.0005577612,0.0009322165,0.004837065,0.001103031,0.2341154,0.1753921,0.08616588,0.001241421],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951003,0.002076906,0.0004332337,0.0006161215,0.001251511,0.000310164,0.00007133093,0.00001168624,0.0001288157],"genre_scores_gemma":[0.9924364,0.00008383174,0.006125203,0.0001427456,0.001117885,0.000004694743,0.0000113944,0.0000219244,0.00005590038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7573813,"threshold_uncertainty_score":0.6326101,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}