{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":3129,"total_is_capped":false,"direct_labels_cover":13,"predictions_cover":3129,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"28566060d31a","filters":{"venue":"Methods in molecular biology"}},"results":[{"id":"W114564532","doi":"10.1007/978-1-60327-164-6_7","title":"Enumeration of Bacteriophages by Double Agar Overlay Plaque Assay","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1083,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Enumeration; Agar; Virus quantification; Microbiology; Overlay; Biology; Computer science; Bacteria; Mathematics; Virology; Combinatorics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01007905393934878,"gpt":0.3533976939878204,"spread":0.3433186400484717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004819273,0.0001099789,0.0001864494,0.00004179375,0.00002846324,0.00001031104,0.0001474184,0.0001328607,0.001033135],"category_scores_gemma":[0.00004034576,0.0001032089,0.00005954994,0.0001455519,0.00008376069,0.00007282747,0.00005478329,0.0001348242,0.00002782503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005859638,"about_ca_system_score_gemma":0.000005371207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002673052,"about_ca_topic_score_gemma":0.00002798428,"domain_scores_codex":[0.9988683,0.0004136121,0.0002468741,0.0002472934,0.0000371693,0.0001867923],"domain_scores_gemma":[0.999623,0.00005250284,0.00009398211,0.0001902748,0.000006188601,0.00003404103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002312803,0.00006455566,0.0002700843,0.000001352642,0.000005285972,0.000003093853,0.00005921444,0.00003427009,0.9719685,0.000259207,0.000304523,0.02700677],"study_design_scores_gemma":[0.0003034258,0.0001328859,0.007620104,0.000005609114,0.000006465576,0.000008878333,0.000007457249,0.00005819621,0.966225,0.000592663,0.02492775,0.0001115615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3494628,0.000153731,0.6429422,0.0005834757,0.0002536927,0.0002066495,0.00001678129,0.00002107723,0.006359583],"genre_scores_gemma":[0.4959556,0.00005420078,0.5026106,0.000746239,0.00001669762,0.00001241864,0.0000480335,0.00001131028,0.0005448988],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1464928,"threshold_uncertainty_score":0.9998801,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3080427797","doi":"10.1007/978-1-0716-0826-5_3","title":"Siamese Neural Networks: An Overview","year":2020,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Neural Networks and Applications","field":"Computer Science","cited_by":670,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Krembil Foundation","funders":"","keywords":"Artificial neural network; Computer science; Similarity (geometry); Artificial intelligence; Perceptron; Curse of dimensionality; Representation (politics); Pattern recognition (psychology); Rank (graph theory); Feedforward neural network; Cosine similarity; Euclidean distance; Machine learning; Pearson product-moment correlation coefficient; Convolutional neural network; Mathematics; Statistics","retraction":null,"screen_n_in":null,"score":{"opus":0.1298686972305546,"gpt":0.4926620052493232,"spread":0.3627933080187686,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007999762,0.0004501398,0.001580672,0.000143116,0.00005394106,0.00008409323,0.002352735,0.0004421587,0.00001079795],"category_scores_gemma":[0.00007871651,0.0003645245,0.0004147027,0.001411641,0.00008131129,0.00007663023,0.0008029599,0.0007969111,0.00001294822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004324727,"about_ca_system_score_gemma":0.00007677578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009488236,"about_ca_topic_score_gemma":0.000002770679,"domain_scores_codex":[0.9937358,0.003929996,0.0006733172,0.001098987,0.00007373752,0.000488085],"domain_scores_gemma":[0.9978678,0.0003968935,0.0002864514,0.0012502,0.00002479014,0.0001739266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[3.035263e-7,0.0000194375,3.733488e-7,0.000232742,0.00001778413,0.00005413578,0.000005600004,0.0001130959,0.00001098889,0.05832466,0.00003087383,0.94119],"study_design_scores_gemma":[0.0000536537,0.00007639799,2.811425e-7,0.0002873498,0.00004709529,0.00005840927,4.625807e-7,0.06632705,0.000002588459,0.006605817,0.926191,0.0003498974],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[1.755385e-8,0.5015659,0.497691,0.0001239035,0.0002073589,0.0003016229,0.000002103739,0.0000624563,0.00004556595],"genre_scores_gemma":[9.094396e-8,0.5523244,0.4467364,0.0006316359,0.000104068,0.0001481132,0.00002678513,0.00002251194,0.000005919512],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9408401,"threshold_uncertainty_score":0.9998807,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W99972145","doi":"10.1007/978-1-4939-0799-1_4","title":"Yeast Transformation by the LiAc/SS Carrier DNA/PEG Method","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":653,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Notice; PEG ratio; Saccharomyces cerevisiae; Microtiter plate; Transformation efficiency; Biology; Molecular biology; Genetics; Gene; Business; Political science; Agrobacterium","retraction":null,"screen_n_in":null,"score":{"opus":0.01528362098769542,"gpt":0.3921334445867319,"spread":0.3768498235990365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002610612,0.0002119088,0.0002347093,0.00007826644,0.00008938647,0.00002537106,0.0004900027,0.0003368216,0.00003544051],"category_scores_gemma":[0.0004188905,0.0001557246,0.000134571,0.0002239687,0.0001816572,0.00000267723,0.000152761,0.0002759016,0.00001093702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000166313,"about_ca_system_score_gemma":0.00004808026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005045401,"about_ca_topic_score_gemma":0.00002520657,"domain_scores_codex":[0.9959158,0.002716051,0.0003164775,0.0004596115,0.0001296351,0.0004624534],"domain_scores_gemma":[0.9991288,0.00009129439,0.00006381749,0.0005399822,0.00007999899,0.00009614271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004394872,0.00002687922,0.0001672338,0.00001133968,0.00003091359,7.64037e-7,0.0000734748,0.00008834375,0.9430897,0.001402033,0.0004455493,0.05461977],"study_design_scores_gemma":[0.000388659,0.0002239299,0.0000918479,0.000004066527,0.00001029476,0.00001571819,0.00004388195,0.001047265,0.8032051,0.001840931,0.1929572,0.0001711481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04159524,0.001000667,0.9516793,0.0006822462,0.000288842,0.0002861016,0.00003994505,0.00001108424,0.004416554],"genre_scores_gemma":[0.2782578,0.0003106554,0.7149287,0.002851492,0.000362432,0.0002979896,0.0004912828,0.0001023017,0.002397282],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2367506,"threshold_uncertainty_score":0.6350266,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897766421","doi":"10.1007/978-1-4939-8728-3_8","title":"16S rRNA Gene Analysis with QIIME2","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":629,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Phylogenetic tree; Biology; Taxonomic rank; 16S ribosomal RNA; Metagenomics; Phylogenetic diversity; Computational biology; Phylogenetics; Tree (set theory); Gene; Ecology; Genetics; Mathematics","retraction":null,"screen_n_in":null,"score":{"opus":0.01462159567818407,"gpt":0.3630929429158632,"spread":0.3484713472376791,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009329964,0.0001312471,0.0002992669,0.0001194531,0.0001000959,0.000003960136,0.0003947481,0.0001960828,0.004711546],"category_scores_gemma":[0.00008565588,0.0001069899,0.00006956235,0.0008364898,0.0008864318,0.00002084399,0.0003160154,0.000233541,0.0001670867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004724896,"about_ca_system_score_gemma":0.000009269828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005295886,"about_ca_topic_score_gemma":0.002363911,"domain_scores_codex":[0.9970166,0.002125444,0.0001766902,0.0003326326,0.00003132397,0.0003172871],"domain_scores_gemma":[0.9992321,0.0001541778,0.00006822318,0.0004877036,0.0000111459,0.00004669491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005207683,0.00005184293,0.05024681,7.897799e-7,0.000129067,0.00001046623,0.0001372816,0.0002617589,0.9448422,0.0005897896,0.00006878418,0.003609195],"study_design_scores_gemma":[0.001067874,0.001871042,0.1590879,0.000004474493,0.0004091385,0.00004952592,0.0000617615,0.001274607,0.7607365,0.03273528,0.04189929,0.0008026071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4417427,0.00003309796,0.5502641,0.0001186055,0.00006711768,0.0000869131,0.000002677039,0.00001625835,0.007668464],"genre_scores_gemma":[0.3440905,0.000006866774,0.6545484,0.00118426,0.00001813753,0.00001152844,0.00002590291,0.000008125676,0.0001062677],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1841056,"threshold_uncertainty_score":0.9961983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2309028480","doi":"10.1007/978-1-62703-059-5_23","title":"Partial Least Squares Methods: Partial Least Squares Correlation and Partial Least Square Regression","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Spectroscopy and Chemometric Analyses","field":"Chemistry","cited_by":440,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Baycrest Hospital","funders":"","keywords":"Partial least squares regression; Latent variable; Mathematics; Statistics; Partial correlation; Covariance; Multivariate statistics; Data set; Set (abstract data type); Correlation; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.03617235603248909,"gpt":0.4266500097395352,"spread":0.3904776537070461,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002141189,0.0006099642,0.0009818992,0.0004038614,0.0002586395,0.00006857602,0.0003939349,0.0008928785,0.001303024],"category_scores_gemma":[0.002041751,0.0005371472,0.0002892904,0.0007961654,0.0005094463,0.0002056335,0.0003227441,0.0008406779,0.00003030968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001410527,"about_ca_system_score_gemma":0.00007263335,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001874637,"about_ca_topic_score_gemma":0.00001078163,"domain_scores_codex":[0.994415,0.002249154,0.0009194019,0.0009653029,0.0002696209,0.001181469],"domain_scores_gemma":[0.9975548,0.0008297923,0.0004427785,0.0007215092,0.0001013091,0.0003497703],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003789283,0.0003295564,0.0848382,0.000126379,0.000184148,0.00002340423,0.0005854786,0.0001529257,0.8547718,0.003501442,0.0001117481,0.05499598],"study_design_scores_gemma":[0.00126932,0.0001749472,0.001427991,0.00007946073,0.000372382,0.00007064843,0.001017972,0.004364213,0.978386,0.001286511,0.01081347,0.0007371273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1003313,0.008944801,0.8878505,0.0002808981,0.0006210495,0.0001993014,0.00003363135,0.0001428303,0.001595715],"genre_scores_gemma":[0.6562424,0.0001596343,0.3420939,0.0001817384,0.0007184283,0.0001323196,0.0001480769,0.00007834474,0.0002451389],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.5559112,"threshold_uncertainty_score":0.999708,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2745112655","doi":"10.1007/978-1-4939-7219-7_1","title":"ErbB Receptors and Cancer","year":2017,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":431,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"ErbB; Receptor tyrosine kinase; ERBB3; ERBB4; Cancer research; Receptor; Epidermal growth factor receptor; Biology; Epidermal growth factor; Signal transduction; Neuregulin; Tyrosine kinase; Growth factor receptor; Cell biology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.3336806821133151,"gpt":0.6622974962907782,"spread":0.3286168141774631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002565011,0.00038989,0.002471951,0.0004485259,0.00005357843,0.00002066889,0.0004132527,0.0009612399,0.0003162133],"category_scores_gemma":[0.001793797,0.0002979865,0.0002891895,0.0002327637,0.0005699458,0.00001115887,0.0002666029,0.001222083,0.00002031903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003592336,"about_ca_system_score_gemma":0.0009485268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002204923,"about_ca_topic_score_gemma":0.00001487095,"domain_scores_codex":[0.9953271,0.002656259,0.0005513963,0.0007911886,0.0001329266,0.0005411152],"domain_scores_gemma":[0.9981341,0.0003744875,0.0002427857,0.0009990713,0.00006454291,0.0001850363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000008995346,0.00002183198,0.00007478434,0.00553591,0.0001330596,0.0001146091,0.0000224682,2.347597e-8,0.0001796508,0.0002921179,0.0002666978,0.9933499],"study_design_scores_gemma":[0.0002669142,0.0001394577,0.000005533586,0.01040077,0.0002966364,0.0001072887,0.000003441812,0.000002370757,0.0001279268,0.0006414335,0.9877592,0.0002489789],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[9.95926e-7,0.9770463,0.01753865,0.0002271347,0.0007480491,0.00104511,0.00002105021,0.00002257364,0.003350138],"genre_scores_gemma":[4.101683e-8,0.7582145,0.2401781,0.0001032252,0.0001608661,0.0002920371,0.00003172549,0.00006550002,0.0009539549],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9931009,"threshold_uncertainty_score":0.9999472,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2475435998","doi":"10.1007/978-1-59745-548-0_15","title":"Assembling DNA Barcodes","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":389,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; DNA barcoding; Identification (biology); Computational biology; Biology; Kingdom; Evolutionary biology; Computer science; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.05846406047343634,"gpt":0.422726206296243,"spread":0.3642621458228067,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008351717,0.0001455707,0.0001741473,0.0001495091,0.00009136555,0.00001045338,0.0002876532,0.0002352926,0.00004176646],"category_scores_gemma":[0.0005598104,0.0001498716,0.000097487,0.0002302476,0.0001866034,0.000002463939,0.00009430798,0.0001243262,0.00003047527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000012355,"about_ca_system_score_gemma":0.00006024373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000935213,"about_ca_topic_score_gemma":0.000005086714,"domain_scores_codex":[0.9981193,0.0007413272,0.0003367558,0.0004774083,0.00006336475,0.0002618486],"domain_scores_gemma":[0.9992057,0.0000392326,0.00009240938,0.0005181204,0.00008701917,0.00005749347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001307236,0.00004528873,0.002463831,0.000004336061,0.00001784845,0.000004525229,0.00003470294,0.00002741669,0.9901561,0.004913724,0.0002071036,0.002112017],"study_design_scores_gemma":[0.0002909021,0.00006565119,0.001828186,0.000003492619,0.000004703569,0.00004685225,0.00002920273,0.00009334796,0.9521759,0.0007072018,0.04456922,0.0001853003],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2499056,0.0005585711,0.7466829,0.0001810029,0.0002707988,0.0001241906,0.000003770889,0.0000200082,0.002253135],"genre_scores_gemma":[0.4635738,0.0002114658,0.5345224,0.0005557542,0.00007846463,0.00006200581,0.0001280588,0.00002748204,0.0008405629],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2136682,"threshold_uncertainty_score":0.6111585,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W65533086","doi":"10.1007/978-1-61779-108-6_2","title":"Cell Viability Analysis Using Trypan Blue: Manual and Automated Methods","year":2011,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Animal testing and alternatives","field":"Veterinary","cited_by":379,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network","funders":"","keywords":"Hemocytometer; Trypan blue; Reproducibility; Instrumentation (computer programming); Viability assay; Computer science; Biomedical engineering; Engineering; Chromatography; Biology; Chemistry; Cell; Biochemistry; Operating system","retraction":null,"screen_n_in":null,"score":{"opus":0.2311818652455239,"gpt":0.5449882586341825,"spread":0.3138063933886586,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002689319,0.0002176985,0.000520927,0.0003283648,0.00006160285,0.00001152575,0.0002143195,0.0001938474,0.0001006056],"category_scores_gemma":[0.0006048718,0.0001964435,0.0001382199,0.0006073647,0.0002683474,0.00003388397,0.0002346047,0.000238049,0.000002363753],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003519373,"about_ca_system_score_gemma":0.00001846792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006128913,"about_ca_topic_score_gemma":0.000004089704,"domain_scores_codex":[0.9924369,0.006182809,0.0003957599,0.0005999188,0.00004850217,0.0003360355],"domain_scores_gemma":[0.9988233,0.000536275,0.0001566836,0.0003627257,0.00004554371,0.00007549088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001098198,0.0001084491,0.03157905,0.00002523045,0.0002189581,0.0001000183,0.0009935467,0.00003081888,0.9558399,0.0003843014,9.661812e-7,0.01060899],"study_design_scores_gemma":[0.001039125,0.002023439,0.1177175,0.00002628102,0.001008512,0.0001633431,0.0009537232,0.3445361,0.5089638,0.02226502,0.0002284232,0.001074775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4905221,0.0002098236,0.5084371,0.000003050081,0.00004472697,0.00006998123,0.000005296251,0.0001038189,0.0006040974],"genre_scores_gemma":[0.3377249,0.000003680876,0.6621785,0.00004497194,0.000009853354,0.000007340161,0.00000439604,0.00001381723,0.00001254372],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.4468761,"threshold_uncertainty_score":0.8010735,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W41605747","doi":"10.1007/978-1-60327-164-6_13","title":"Phage Classification and Characterization","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":339,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Prokaryote; Virus classification; Biology; Predictive value; Computational biology; Evolutionary biology; Virology; Bacteria; Genome; Genetics; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01881916650877489,"gpt":0.3690059815191328,"spread":0.3501868150103579,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002051219,0.00005646714,0.00007329207,0.00003013039,0.00002549629,0.000009592525,0.00005470485,0.00006463657,0.0002581432],"category_scores_gemma":[0.0000290244,0.00005356475,0.00001525663,0.00009932878,0.00005117179,0.00005129665,0.00002900852,0.00007059299,0.00002012044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002886254,"about_ca_system_score_gemma":0.000001477208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001894235,"about_ca_topic_score_gemma":0.000004140644,"domain_scores_codex":[0.9993862,0.0002123877,0.000109825,0.0001756116,0.00001421034,0.0001017559],"domain_scores_gemma":[0.9998246,0.00001596606,0.00003777481,0.00009724851,0.000002287131,0.00002207321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000002860497,0.00002307412,0.0006948526,3.545906e-7,7.812237e-7,0.000001232345,0.00003370342,7.392741e-7,0.8373331,0.000474924,0.000003092169,0.1614313],"study_design_scores_gemma":[0.0001649476,0.0001072405,0.7184501,0.000003806649,0.0000052357,0.00001808377,0.00001089359,0.0005922837,0.2619978,0.002518927,0.01601253,0.0001180929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4089072,0.00001491699,0.588617,0.0004996173,0.00006591341,0.00007334913,0.000001712456,0.00001136252,0.001808948],"genre_scores_gemma":[0.5357729,0.0000431106,0.4627887,0.001145918,0.0000131015,0.000007805976,0.00003364315,0.000005002306,0.0001897501],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.7177553,"threshold_uncertainty_score":0.2826487,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4285293142","doi":"10.1007/978-1-0716-2376-3_10","title":"Enzyme-Linked Immunosorbent Assay (ELISA)","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":291,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Enzyme; Chemistry; Molecular biology; Biology; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01804037923571036,"gpt":0.3839660939577909,"spread":0.3659257147220805,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002166729,0.0002473813,0.0003353284,0.0002016585,0.0001560632,0.00001195317,0.0004503075,0.0002134052,0.00002901849],"category_scores_gemma":[0.0003892308,0.0002440433,0.0002215049,0.0003898658,0.0001617976,0.000001797677,0.0006621486,0.0003732576,0.000001631185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006617268,"about_ca_system_score_gemma":0.00006225918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003347353,"about_ca_topic_score_gemma":0.00001021373,"domain_scores_codex":[0.9958177,0.002527745,0.000410313,0.0006840322,0.0001263418,0.000433871],"domain_scores_gemma":[0.9989894,0.00005986236,0.0001528171,0.0006821093,0.00005718857,0.00005859095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006406852,0.00009546017,0.000559485,0.000003280377,0.00005906398,0.0000210321,0.00001541845,0.0001262414,0.9774073,0.0007223167,0.0001652787,0.02076099],"study_design_scores_gemma":[0.0003659536,0.0003723503,0.0001195837,0.000003163312,0.0000222467,0.00005078971,0.00008447696,0.0002033279,0.8971633,0.003178287,0.09810688,0.0003296652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.07183785,0.002097372,0.9235729,0.0003685219,0.0003037529,0.0002795136,0.00003363743,0.00006852573,0.001437927],"genre_scores_gemma":[0.3812164,0.0001325035,0.6165239,0.001244928,0.00006703204,0.0001092056,0.000266747,0.0000367929,0.0004025185],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.3093785,"threshold_uncertainty_score":0.9951799,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W122755776","doi":"10.1007/978-1-59745-060-7_18","title":"Bone Marrow-Derived Mesenchymal Stem Cells: Isolation, Expansion, Characterization, Viral Transduction, and Production of Conditioned Medium","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Mesenchymal stem cell research","field":"Medicine","cited_by":290,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Mesenchymal stem cell; Cell biology; Clinical uses of mesenchymal stem cells; Paracrine signalling; Bone marrow; Biology; Stem cell transplantation for articular cartilage repair; Cell sorting; Stem cell; Immunology; Adult stem cell; Endothelial stem cell; In vitro; Flow cytometry","retraction":null,"screen_n_in":null,"score":{"opus":0.03470971677383803,"gpt":0.3549415168397398,"spread":0.3202318000659018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001465929,0.0002192431,0.0006013215,0.0004616117,0.0001094727,0.000005159351,0.0000930469,0.0002877347,0.0001734246],"category_scores_gemma":[0.0003579673,0.0002025435,0.00008147297,0.0005595941,0.0005393757,0.0000952707,0.00004996181,0.0002958675,0.000004279582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006064502,"about_ca_system_score_gemma":0.0001785888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002907605,"about_ca_topic_score_gemma":0.000003098804,"domain_scores_codex":[0.9966336,0.001429619,0.0007503302,0.0005893646,0.000258549,0.0003384718],"domain_scores_gemma":[0.9987257,0.000123712,0.0002092546,0.0003825127,0.0004195569,0.0001393025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002484344,0.0001270265,0.007965768,0.0001353825,0.00004335023,0.00004251838,0.0007107058,0.000009764122,0.9875592,0.0002106024,0.00002991225,0.002917341],"study_design_scores_gemma":[0.001120906,0.0003988098,0.02530168,0.00004768169,0.00003749754,0.0003559805,0.0001383728,0.0003154071,0.9710224,0.0005186294,0.0005719326,0.0001707071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6369309,0.0003834989,0.3604605,0.001152517,0.0003422407,0.000638015,0.000006507094,0.00003065358,0.00005516457],"genre_scores_gemma":[0.7146702,0.000781777,0.2831566,0.0001734223,0.0001339477,0.0001147457,0.000204868,0.00004709771,0.0007172474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07773931,"threshold_uncertainty_score":0.8259485,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2567713795","doi":"10.1007/978-1-4939-6737-7_1","title":"Antimicrobial Peptides: An Introduction","year":2016,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":287,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Antimicrobial peptides; Antimicrobial; Antibiotics; Function (biology); Computational biology; Biology; Antibiotic resistance; Microbiology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03368411074606457,"gpt":0.3997311406278723,"spread":0.3660470298818077,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001422239,0.0007319303,0.002480465,0.0006393412,0.0001180668,0.00002698921,0.0006914738,0.001771224,0.0004832285],"category_scores_gemma":[0.0002978768,0.0005373827,0.0006226436,0.0003112904,0.0007171277,0.000102635,0.0002975619,0.0009663963,0.0004007521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001447847,"about_ca_system_score_gemma":0.0001957838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004749227,"about_ca_topic_score_gemma":0.000009080179,"domain_scores_codex":[0.9915545,0.005427912,0.0009697315,0.001210024,0.00002002453,0.0008178017],"domain_scores_gemma":[0.99817,0.0003653784,0.0004957427,0.0008777442,0.00005526972,0.000035887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001784007,0.00009042753,0.000001717051,0.0006861495,0.0001914313,0.00001571593,0.00002343608,2.552034e-7,0.1908322,0.003997327,0.001003324,0.8031402],"study_design_scores_gemma":[0.000349437,0.0001490179,3.139025e-7,0.001236034,0.0001946327,0.0003854953,0.00001421818,1.010884e-7,0.01502743,0.0006759837,0.9813246,0.0006427849],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000010369,0.8619609,0.1344045,0.0001363237,0.002463856,0.0005459158,0.0001221599,0.00009710273,0.0002588774],"genre_scores_gemma":[0.000001672487,0.8866483,0.1105752,0.0001474974,0.0003780436,0.00007320137,0.000681204,0.0001002553,0.001394683],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9803212,"threshold_uncertainty_score":0.9997078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3123255347","doi":"10.1007/978-1-60327-164-6","title":"Bacteriophages","year":2009,"lang":"en","type":"book","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":267,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.01373914333118821,"gpt":0.358796383308268,"spread":0.3450572399770798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004293701,0.0003048528,0.0004405177,0.0001084052,0.00003696316,0.00002020302,0.000381547,0.0005721978,0.006046949],"category_scores_gemma":[0.00006446247,0.0002958494,0.0001770043,0.00009613238,0.0002113959,0.00003798084,0.0002724355,0.0005755148,0.0005460496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003351963,"about_ca_system_score_gemma":0.00002973124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007639682,"about_ca_topic_score_gemma":0.00005617924,"domain_scores_codex":[0.9981899,0.0004900161,0.0003544949,0.0005647067,0.00004936622,0.0003515521],"domain_scores_gemma":[0.999254,0.00009039209,0.0001513236,0.0004330449,0.000005610098,0.00006557682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006433392,0.00002834307,0.0000135766,0.000004758842,0.0000143463,0.00006379894,0.00002616644,0.000007278913,0.8939484,0.0004590905,0.004858715,0.100569],"study_design_scores_gemma":[0.0001495068,0.0001158826,0.001168145,0.00003524936,0.00002603729,0.00004778807,0.000001683702,0.000006782168,0.02032887,0.01961555,0.9581324,0.0003720499],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"methods","genre_scores_codex":[0.0001919435,0.0004028871,0.1615541,0.0001718142,0.0004500864,0.0002813382,0.00001667893,0.00004527578,0.8368859],"genre_scores_gemma":[0.00001741781,0.0001044732,0.5618935,0.001210937,0.00006243992,0.00001645428,0.00008515046,0.00003677267,0.4365728],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9532737,"threshold_uncertainty_score":0.9999493,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2900730055","doi":"10.1007/978-1-4939-8618-7_10","title":"miRNet—Functional Analysis and Visual Exploration of miRNA–Target Interactions in a Network Context","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":265,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; McGill University","keywords":"Context (archaeology); Computer science; microRNA; Biology; Genetics; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.02988728186424473,"gpt":0.3986795137081915,"spread":0.3687922318439468,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006528078,0.0001299008,0.000251593,0.000288003,0.00002796877,0.00000677314,0.00007271261,0.000141231,0.00006010246],"category_scores_gemma":[0.0002796664,0.0001359147,0.00009496476,0.0005620781,0.0002088561,0.000008055737,0.00009437359,0.00008253846,0.00000140971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002261617,"about_ca_system_score_gemma":0.00004928246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007622329,"about_ca_topic_score_gemma":0.0008488664,"domain_scores_codex":[0.9981953,0.0008239595,0.0003670624,0.0003740639,0.00004751835,0.0001921038],"domain_scores_gemma":[0.9994617,0.00006849696,0.0001400137,0.0001865769,0.0001021276,0.00004114591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001663546,0.0000669608,0.04786089,0.000007434682,0.00018658,0.000001446901,0.00005004674,0.0005610335,0.9458466,0.0005314031,0.00003851011,0.004682752],"study_design_scores_gemma":[0.001082488,0.0004159742,0.08801125,0.00002671915,0.0001433854,0.000008648288,0.0001214665,0.007190466,0.8916449,0.007253652,0.003788948,0.0003121106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.399081,0.0004955287,0.6000795,0.00004708609,0.0001009979,0.0001068866,0.000004435029,0.000003080578,0.00008144933],"genre_scores_gemma":[0.790465,0.0000328892,0.208997,0.0001324985,0.0001008702,0.00003693909,0.0001956091,0.00001084049,0.00002843992],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.3913839,"threshold_uncertainty_score":0.554244,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4235666967","doi":"10.1007/978-1-4939-1363-3_1","title":"Yeast Transformation by the LiAc/SS Carrier DNA/PEG Method","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Protocol (science); Transformation efficiency; DNA; Computational biology; Computer science; Microtiter plate; Biology; Molecular biology; Genetics; Gene; Medicine; Agrobacterium","retraction":null,"screen_n_in":null,"score":{"opus":0.008353399979741575,"gpt":0.3997997867788791,"spread":0.3914463867991375,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001672197,0.0001946392,0.0002110538,0.0000569402,0.00005388101,0.00001515106,0.0003023103,0.0002696578,0.00001633723],"category_scores_gemma":[0.0002640335,0.0001530376,0.0001154948,0.0001466556,0.00008278566,0.000002129934,0.00007385815,0.000179478,0.000003327029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001200521,"about_ca_system_score_gemma":0.00001972812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003044558,"about_ca_topic_score_gemma":0.00001714969,"domain_scores_codex":[0.9978835,0.001078692,0.0002840337,0.0003563033,0.00006649429,0.0003309922],"domain_scores_gemma":[0.9993441,0.00006098058,0.00005142655,0.0004461878,0.00003604338,0.00006128525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000144844,0.00001274613,0.00008695199,0.000009405696,0.00002580093,4.479384e-7,0.00009229073,0.0004928985,0.9492691,0.001056239,0.0002443033,0.04869539],"study_design_scores_gemma":[0.0003320239,0.000118047,0.0001074875,0.000003991195,0.00001562953,0.00001727024,0.00004941742,0.00165215,0.8161995,0.0008733897,0.1804556,0.0001755036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02007344,0.001033558,0.9761132,0.0003099571,0.000359251,0.0002007355,0.0000184266,0.00001486031,0.001876577],"genre_scores_gemma":[0.2310944,0.0001306905,0.7662315,0.001431053,0.0002045419,0.000133365,0.0002149263,0.00006261668,0.0004969772],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2110209,"threshold_uncertainty_score":0.624069,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897322335","doi":"10.1007/978-1-4939-8728-3_11","title":"Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Genome; Biology; Metagenomics; Computational biology; Gene; Taxon; Microbiome; Evolutionary biology; Phylogenetics; Genetics; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.02192490922140545,"gpt":0.3218194195309742,"spread":0.2998945103095688,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006163167,0.0001415763,0.0001640922,0.00003320684,0.0001425918,0.000007354428,0.0003194761,0.000168111,0.00002333019],"category_scores_gemma":[0.0001318058,0.00008993453,0.0001311644,0.0001308608,0.0005336144,3.988014e-7,0.0005161343,0.00009344843,7.545434e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001050361,"about_ca_system_score_gemma":0.00005868103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002191088,"about_ca_topic_score_gemma":0.00004342136,"domain_scores_codex":[0.9984192,0.000700739,0.0002673459,0.0003213918,0.00005114165,0.0002401668],"domain_scores_gemma":[0.9992878,0.00004558938,0.0001331984,0.0004238238,0.00009076226,0.00001882292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004235689,0.00001583805,0.03423128,0.000002500713,0.0001088287,4.341562e-7,0.00003426362,0.0001395755,0.9631853,0.00007470361,0.00001978007,0.002145155],"study_design_scores_gemma":[0.0003046069,0.00008495698,0.04791969,0.000007298435,0.00004661729,0.00001448696,0.00009011332,0.0005141079,0.9450067,0.001261979,0.004626748,0.0001226632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7776682,0.002289612,0.2189234,0.00008692165,0.0007337988,0.0001283008,0.00003486767,0.000001305513,0.000133602],"genre_scores_gemma":[0.8187187,0.00006058097,0.1804352,0.0003324874,0.0003724338,0.00001055576,0.00001448239,0.00001732308,0.0000381659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04105052,"threshold_uncertainty_score":0.3667424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2770467375","doi":"10.1007/978-1-4939-7343-9_3","title":"Practical Advice on the One-Step Growth Curve","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":245,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Advice (programming); Computer science; Two step; Mathematics; Applied mathematics; Programming language","retraction":null,"screen_n_in":null,"score":{"opus":0.03362087441852599,"gpt":0.3938948119587871,"spread":0.360273937540261,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001563633,0.0001731105,0.0001925514,0.00004985586,0.0001508659,0.00003521132,0.0004111885,0.000259857,0.00001669005],"category_scores_gemma":[0.003750565,0.0001280739,0.00009011777,0.00005942726,0.0001928495,0.000002992975,0.0001957499,0.0002845525,0.00001378616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001130612,"about_ca_system_score_gemma":0.00003449483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007663241,"about_ca_topic_score_gemma":0.00001520136,"domain_scores_codex":[0.998253,0.0007286317,0.0002021769,0.0004688966,0.00005923092,0.0002880861],"domain_scores_gemma":[0.9987605,0.00003962229,0.0001268406,0.0009615477,0.0000661409,0.00004529935],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004780249,0.00005762159,0.0003211076,0.000006861876,0.00003736563,0.000004120784,0.000007742622,0.000007415005,0.980062,0.01547094,0.0005105105,0.003466523],"study_design_scores_gemma":[0.0002765081,0.0002038332,0.00109643,0.00001233576,0.0000167595,0.00002373904,0.00001126271,0.00007483052,0.9423168,0.001103456,0.05466735,0.0001967116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.09347183,0.0003844686,0.892463,0.007887868,0.001084425,0.0003535239,0.000009956721,0.00003222182,0.004312673],"genre_scores_gemma":[0.2180137,0.0002484852,0.7793565,0.001272684,0.0005581364,0.0000598408,0.00002970432,0.00003779806,0.0004230475],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1245419,"threshold_uncertainty_score":0.5222701,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2416577414","doi":"10.1007/978-1-61779-591-6_10","title":"Methods for DNA Barcoding Photosynthetic Protists Emphasizing the Macroalgae and Diatoms","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"Ontario Genomics Institute; Genome Canada","keywords":"DNA barcoding; Biology; Barcode; Cytochrome c oxidase subunit I; Plastid; Mitochondrial DNA; Molecular marker; Red algae; Botany; Algae; Gene; Evolutionary biology; Genetics; Chloroplast","retraction":null,"screen_n_in":null,"score":{"opus":0.02736795161060792,"gpt":0.4047124138774846,"spread":0.3773444622668767,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004903822,0.0001590114,0.0002677442,0.00004213546,0.0002297195,0.00000845505,0.0003520956,0.0002034933,0.0003429199],"category_scores_gemma":[0.000670277,0.0001185023,0.00006694592,0.0001495751,0.0005646571,0.00004329617,0.0004890863,0.0002825529,0.00001068411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004696606,"about_ca_system_score_gemma":0.00000665319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007771589,"about_ca_topic_score_gemma":0.00004497981,"domain_scores_codex":[0.9939793,0.005001964,0.0002252391,0.0002573682,0.00002134928,0.0005147828],"domain_scores_gemma":[0.9978614,0.001652696,0.00008228415,0.0003358003,0.000004823726,0.0000629956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002161122,0.00003786076,0.008773248,0.00000842077,0.00001380878,4.636697e-7,0.0005212464,0.000006392448,0.9164147,0.002159974,0.0000212818,0.07202102],"study_design_scores_gemma":[0.0006885775,0.0002301498,0.01853953,0.00001256671,0.00005132579,0.00008081415,0.0001645846,0.000937099,0.8502255,0.06582415,0.06279247,0.0004532259],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2392667,0.0006212113,0.7581708,0.0002629002,0.0002499114,0.0006512362,0.00000339876,0.00001683433,0.0007569866],"genre_scores_gemma":[0.1927651,0.00002602512,0.8060506,0.0008906818,0.00002267579,0.0001955511,0.000006814507,0.00001563775,0.00002688228],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0715678,"threshold_uncertainty_score":0.4832383,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W196395934","doi":"10.1007/978-1-62703-128-8_14","title":"Generation and Characterization of Murine Alternatively Activated Macrophages","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Arginase; Chemokine; Cell biology; Innate immune system; Macrophage; Inflammation; Cytokine; Immune system; Biology; Nitric oxide; Phenotype; Immunology; Chemistry; Arginine; In vitro; Biochemistry; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.03107506347354663,"gpt":0.3709163522686537,"spread":0.339841288795107,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006424221,0.0001140332,0.0002357001,0.0001332758,0.00002646871,0.000002165764,0.00009221701,0.0002138816,0.0001401444],"category_scores_gemma":[0.0001138192,0.0001051168,0.00002712043,0.0001162594,0.0001848334,0.00005040005,0.00008897818,0.0001521136,0.000006208638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002473792,"about_ca_system_score_gemma":0.00001180964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003003202,"about_ca_topic_score_gemma":7.550734e-7,"domain_scores_codex":[0.9981491,0.001187366,0.0002492123,0.0001743508,0.00001116417,0.0002287954],"domain_scores_gemma":[0.999577,0.00008114433,0.0001427403,0.000151725,0.00003763307,0.00000977755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003171918,0.00004822516,0.005260933,0.00001019701,0.00005081888,6.425493e-7,0.0002160772,9.933251e-7,0.9667282,0.001211607,0.000003086916,0.02643755],"study_design_scores_gemma":[0.0004884704,0.00006412911,0.01255421,0.000007245889,0.00001184085,0.00001540112,0.00001111727,0.0000101256,0.9840436,0.0001297957,0.002568317,0.00009576987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.767347,0.002601103,0.2290637,0.0000397113,0.0006870642,0.0001238607,0.000008559975,0.00001099813,0.0001180089],"genre_scores_gemma":[0.8976267,0.0002629239,0.101529,0.0001275444,0.0000341294,0.00002773637,0.0001562395,0.00001580824,0.0002199233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1302797,"threshold_uncertainty_score":0.4286539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2346708074","doi":"10.1007/978-1-60327-164-6_9","title":"Enumeration of Bacteriophages Using the Small Drop Plaque Assay System","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Enumeration; Virus quantification; Drop (telecommunication); Biology; Computational biology; Computer science; Genetics; Mathematics; Combinatorics; Cell culture","retraction":null,"screen_n_in":null,"score":{"opus":0.0216954695374461,"gpt":0.3560334562563664,"spread":0.3343379867189203,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007677625,0.00009645562,0.0001632036,0.00003734082,0.00005370406,0.00001237551,0.0001760143,0.0001002073,0.0001300244],"category_scores_gemma":[0.00005729085,0.0000709161,0.00006062496,0.0001564306,0.00009731943,0.00003643546,0.00006586836,0.0001324533,0.000007467316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009422819,"about_ca_system_score_gemma":0.000007003543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004014522,"about_ca_topic_score_gemma":0.00004386009,"domain_scores_codex":[0.9983609,0.001008082,0.0002471169,0.0001925299,0.00002934656,0.0001619882],"domain_scores_gemma":[0.9995621,0.00008193099,0.0001112515,0.0002162394,0.00000746011,0.00002104361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000007176287,0.00002093085,0.0002461932,0.000003059743,0.000005417834,0.00000463759,0.00009765256,0.0002503464,0.9830375,0.0004359138,0.000003276847,0.01588786],"study_design_scores_gemma":[0.0001605537,0.0001028545,0.01242773,0.00002523657,0.00001989711,0.0000654871,0.00009345255,0.00310487,0.9816794,0.0003476212,0.001844131,0.0001287794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3206286,0.0000499519,0.6780257,0.0001418123,0.0001622589,0.0001228589,0.0000031211,0.000009779366,0.0008558857],"genre_scores_gemma":[0.5656088,0.000006303938,0.4341196,0.0001941276,0.00001514564,0.000004377085,0.000004145064,0.000005566326,0.0000419624],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.2449801,"threshold_uncertainty_score":0.2891874,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2965200254","doi":"10.1007/978-1-4939-9658-2_2","title":"Morphology of Microglia Across Contexts of Health and Disease","year":2019,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":233,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Microglia; Biology; Phenotype; Ultrastructure; Neuroscience; Disease; Pathology; Morphology (biology); Electron microscope; Medicine; Inflammation; Immunology; Zoology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.1272426843659102,"gpt":0.4932011583418322,"spread":0.365958473975922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001219818,0.000285576,0.001805377,0.0002522886,0.00003088334,0.000006744545,0.0003340614,0.000227288,0.00001668728],"category_scores_gemma":[0.002427273,0.0002490713,0.0002226204,0.0003072508,0.0002952285,0.00001920419,0.0002312703,0.0002803985,0.000005638579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000186677,"about_ca_system_score_gemma":0.0003225606,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004067843,"about_ca_topic_score_gemma":5.176433e-7,"domain_scores_codex":[0.9903208,0.007448038,0.00113779,0.0007064174,0.00008280334,0.000304125],"domain_scores_gemma":[0.9976103,0.0007264649,0.0009665393,0.0005334931,0.00003158428,0.0001315618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001257765,0.00003572919,0.000004544762,0.003807425,0.000005893036,0.00001924794,0.00004217568,0.000001376676,0.4751676,0.01294668,0.000006803774,0.5079499],"study_design_scores_gemma":[0.001033356,0.0006894662,0.000004208436,0.001843654,0.0001048838,0.0001587112,0.00001278588,0.00005600384,0.5375835,0.005870578,0.4520064,0.0006364747],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004691499,0.8723547,0.125601,0.00007542653,0.0004543474,0.0008582154,0.0001536316,0.00001487322,0.00001857681],"genre_scores_gemma":[0.00002857552,0.9481283,0.0507348,0.0009107928,0.000009157305,0.00003972729,0.00002465745,0.00003813371,0.00008584792],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.5073135,"threshold_uncertainty_score":0.9999961,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2615742986","doi":"10.1007/978-1-4939-6952-4_20","title":"AutoDock and AutoDockTools for Protein-Ligand Docking: Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1(BACE1) as a Case Study","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Montreal Clinical Research Institute","funders":"","keywords":"AutoDock; Docking (animal); Protein–ligand docking; Computer science; Virtual screening; Computational biology; Drug discovery; Structural bioinformatics; Chemistry; Protein structure; Biochemistry; Biology; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.05225687193293021,"gpt":0.4312786929087611,"spread":0.3790218209758309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006151697,0.0004393633,0.0007158088,0.0003350842,0.0005855586,0.0006248313,0.001399363,0.0002391294,0.000003398888],"category_scores_gemma":[0.00310577,0.0004229573,0.0001622499,0.0002682788,0.0002426091,0.0004304526,0.001624355,0.0004228867,0.000005217795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009382622,"about_ca_system_score_gemma":0.000229123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004328636,"about_ca_topic_score_gemma":0.0000908072,"domain_scores_codex":[0.9933766,0.003596379,0.0006799792,0.001428471,0.0002211991,0.0006973517],"domain_scores_gemma":[0.9967563,0.0008155733,0.0005117004,0.001570224,0.0001744549,0.0001717533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001604252,0.0006067828,0.002414387,0.0001648266,0.0002413664,0.002942179,0.004085479,0.001823325,0.6250703,0.07746232,0.00001445229,0.2850142],"study_design_scores_gemma":[0.00552029,0.00325577,0.003244564,0.0002322519,0.0001098284,0.002432275,0.0003682815,0.2057484,0.5389072,0.2349107,0.003491545,0.001778868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4420465,0.0001756187,0.5544487,0.000465045,0.0001709148,0.002509583,0.000007015883,0.0000704657,0.0001061903],"genre_scores_gemma":[0.3268975,0.000001111862,0.6719312,0.0001069648,0.00004664607,0.000881197,0.000002881283,0.00003073017,0.0001017625],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2832353,"threshold_uncertainty_score":0.9998222,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2466240566","doi":"10.1007/978-1-60327-164-6_12","title":"Basic Phage Electron Microscopy","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":211,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Uranyl acetate; Magnification; Electron microscope; Staining; Negative stain; Uranyl; Chemistry; Materials science; Optics; Biology; Physics; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01004961981405422,"gpt":0.3908998379691471,"spread":0.3808502181550928,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003269336,0.0001091717,0.0001432395,0.00004377068,0.00003673781,0.00001104078,0.0001750127,0.0001010094,0.001057852],"category_scores_gemma":[0.00004429679,0.0001027329,0.00005955086,0.0001849475,0.00007778312,0.00004070107,0.00005774356,0.0001861779,0.0001375639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009083768,"about_ca_system_score_gemma":0.000004868094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001113097,"about_ca_topic_score_gemma":0.00002507555,"domain_scores_codex":[0.9988633,0.0003685468,0.0001619585,0.0002843289,0.00002331652,0.0002985483],"domain_scores_gemma":[0.9996843,0.00003260158,0.00004096751,0.0002012127,0.000002628617,0.00003834261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009051728,0.00004630505,0.0002042467,4.556855e-7,0.00000255884,0.000009455867,0.00003001125,0.0000104889,0.9548299,0.0002242102,0.0001081858,0.04452508],"study_design_scores_gemma":[0.0001642283,0.0001564373,0.008467481,0.000002916044,0.00000497862,0.00002207879,0.000004043335,0.00003166379,0.957162,0.003448474,0.03041624,0.0001194992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4163435,0.0001611423,0.572637,0.0005621788,0.0002108586,0.0001464322,0.000002629725,0.00003016006,0.009906191],"genre_scores_gemma":[0.1564402,0.00003029895,0.8402832,0.002662638,0.00002110777,0.000009277824,0.000009502627,0.00001048786,0.0005332871],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2676463,"threshold_uncertainty_score":0.9998553,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2999240762","doi":"10.1007/978-1-0716-0239-3_17","title":"Using MetaboAnalyst 4.0 for Metabolomics Data Analysis, Interpretation, and Integration with Other Omics Data","year":2020,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"National Cancer Institute","keywords":"Metabolomics; Omics; Interpretation (philosophy); Computational biology; Computer science; Data mining; Biology; Bioinformatics","retraction":null,"screen_n_in":null,"score":{"opus":0.138662375836852,"gpt":0.4836544271111078,"spread":0.3449920512742558,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002413632,0.0006323238,0.002726543,0.0005493462,0.00007328622,0.00006472456,0.001537205,0.0004377442,0.00000403121],"category_scores_gemma":[0.001315514,0.0004814068,0.0002607146,0.001044324,0.0002162232,0.00001132655,0.001728146,0.0003209491,3.660452e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003034896,"about_ca_system_score_gemma":0.0002515636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006207306,"about_ca_topic_score_gemma":0.0002551138,"domain_scores_codex":[0.9951073,0.001505487,0.0009176101,0.001999738,0.00008763024,0.0003822406],"domain_scores_gemma":[0.9964488,0.0002121616,0.0006814946,0.002464424,0.0001029826,0.00009014706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002663826,0.000108553,0.00008418274,0.001346398,0.02163291,0.000007155494,0.0000406246,0.00005950296,0.04691116,0.004653002,0.00005695729,0.9248332],"study_design_scores_gemma":[0.0004188142,0.0002212118,0.000001376111,0.0001161981,0.01512528,0.00002135582,0.00003892931,0.009774709,0.0008194179,0.0003842961,0.972459,0.0006194736],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.000003714882,0.4922079,0.5060427,0.00001888112,0.00007345803,0.0004848909,0.001146014,0.000005508651,0.00001702676],"genre_scores_gemma":[0.00000403956,0.4921477,0.5010046,0.00009525432,0.00007663599,0.00004721314,0.006565474,0.00005080301,0.000008351613],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.972402,"threshold_uncertainty_score":0.9997638,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2417500499","doi":"10.1007/978-1-61779-337-0_7","title":"Kinase Inhibitor Selectivity Profiling Using Differential Scanning Fluorimetry","year":2011,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":178,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Enzyme; Chemistry; Virtual screening; Drug discovery; Kinase; Combinatorial chemistry; Computational biology; Target protein; Ligand binding assay; Selectivity; Substrate (aquarium); Fluorescence spectroscopy; Biochemistry; Fluorescence; Biophysics; Biology; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.04390471654794068,"gpt":0.368986993629731,"spread":0.3250822770817903,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001010961,0.0001637824,0.0002639119,0.0001710909,0.00008822631,0.0000152943,0.0001527864,0.0002136741,0.000174524],"category_scores_gemma":[0.0003360618,0.0001456749,0.00006212288,0.0002813569,0.0001210084,0.00006166079,0.0001211183,0.0002187584,0.000004957707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000591824,"about_ca_system_score_gemma":0.00004273302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000206943,"about_ca_topic_score_gemma":0.000006718747,"domain_scores_codex":[0.9976349,0.00125073,0.0002547913,0.0004357517,0.00006799191,0.0003557635],"domain_scores_gemma":[0.9995053,0.00006954051,0.00009910276,0.0002313753,0.00004484607,0.00004977653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000458391,0.00002655814,0.004575998,0.00001181942,0.000006258764,0.00001239593,0.0001323742,0.00001358036,0.9903091,0.001375133,0.000001167177,0.003489784],"study_design_scores_gemma":[0.0002188237,0.0000919761,0.0008415133,0.0000114372,0.00001783891,0.0000141703,0.00002755483,0.0006165732,0.9918295,0.006143848,0.00002154799,0.000165194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4936183,0.00008240141,0.5051309,0.000001609124,0.0007890034,0.00007699056,0.000001635039,0.00002972329,0.0002694763],"genre_scores_gemma":[0.4203178,6.704994e-7,0.5795296,0.00003399278,0.00009189842,0.000006974689,0.0000025717,0.00001176813,0.000004688537],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.07439879,"threshold_uncertainty_score":0.594045,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2584760282","doi":"10.1007/978-1-4939-6783-4_11","title":"Functional Interaction Network Construction and Analysis for Disease Discovery","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Computer science; Biological network; Visualization; Classifier (UML); Bayesian network; Interaction network; Machine learning; Data mining; Artificial intelligence; Naive Bayes classifier; Network analysis; Computational biology; Support vector machine; Engineering; Gene; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01992820384485012,"gpt":0.3562708740009987,"spread":0.3363426701561485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005884283,0.0001244749,0.0001934438,0.00006966318,0.0001767873,0.00007334031,0.0001262496,0.0001558113,0.000005605596],"category_scores_gemma":[0.0001731797,0.0001184967,0.0001398852,0.00005470657,0.0001866847,0.000009497411,0.0001499316,0.00008457118,3.889518e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001125238,"about_ca_system_score_gemma":0.00002876483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001072888,"about_ca_topic_score_gemma":0.00002633702,"domain_scores_codex":[0.9990926,0.0001442195,0.000222751,0.0003046239,0.00002779253,0.0002080392],"domain_scores_gemma":[0.9992796,0.00004032182,0.0001783665,0.0004037969,0.00003696973,0.00006090445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001416026,0.00008484338,0.3244891,0.0000710574,0.001516887,0.000005724201,0.00003506334,0.01141651,0.3583511,0.04608548,0.0005799766,0.2559483],"study_design_scores_gemma":[0.006464642,0.001108035,0.3951668,0.00008306793,0.002111224,0.00007005802,0.0002278646,0.09990476,0.04833496,0.3552214,0.08895669,0.00235054],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04131257,0.0004606292,0.9571434,0.0001802942,0.0004949818,0.0001734937,0.00002465797,0.000003845137,0.0002061893],"genre_scores_gemma":[0.2961156,0.0001351583,0.7024655,0.0003242073,0.0003000513,0.00007425307,0.0004272959,0.00001377976,0.0001441261],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.3100162,"threshold_uncertainty_score":0.4832157,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W128683111","doi":"10.1007/978-1-61779-204-5_3","title":"The Proprotein Convertases, 20 Years Later","year":2011,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Proprotein Convertases; Computational biology; Biology; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.03009515244197118,"gpt":0.3979223719370876,"spread":0.3678272194951164,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008166127,0.0004678969,0.0008988052,0.0000955443,0.00006632026,0.00002956002,0.0007462978,0.0007818924,0.00004420421],"category_scores_gemma":[0.0004073699,0.0003071687,0.0005000808,0.0001576368,0.000367336,0.000001320915,0.000408926,0.0004001884,0.00003415973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002482863,"about_ca_system_score_gemma":0.0002377624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003396121,"about_ca_topic_score_gemma":0.00002004684,"domain_scores_codex":[0.9958506,0.00214355,0.0006126833,0.0007742297,0.00006747212,0.0005514909],"domain_scores_gemma":[0.9984724,0.00009214885,0.000257168,0.00101406,0.00004270647,0.0001215252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003380761,0.00005492766,0.00002511504,0.0006475431,0.0002950802,0.00007545541,0.000007891853,3.603693e-7,0.003079119,0.001676006,0.0003845315,0.9937202],"study_design_scores_gemma":[0.0002160437,0.000128609,0.000001903346,0.0001612617,0.0002829656,0.00003699124,0.000004117532,0.000001699605,0.003296911,0.0008360174,0.9946439,0.0003895323],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001957125,0.9816965,0.01601041,0.0000158841,0.0003170788,0.0008923709,0.00007983264,0.00001280046,0.0009555902],"genre_scores_gemma":[0.000003427481,0.9491458,0.04884378,0.0001335906,0.00009109519,0.0005417672,0.0003982724,0.00007588488,0.000766412],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9942594,"threshold_uncertainty_score":0.9999381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W90217597","doi":"10.1007/978-1-62703-017-5_8","title":"Force Fields for Classical Molecular Dynamics","year":2012,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Force field (fiction); Pairwise comparison; Molecular dynamics; Field (mathematics); Molecular mechanics; Statistical physics; Classical mechanics; Computer science; Physics; Mathematics; Artificial intelligence; Quantum mechanics","retraction":null,"screen_n_in":null,"score":{"opus":0.03227412135959856,"gpt":0.4276037533609041,"spread":0.3953296320013055,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001167706,0.000774169,0.00172771,0.0002422389,0.00005903779,0.00002445676,0.00084371,0.002718575,0.00001048944],"category_scores_gemma":[0.0005510664,0.0006890285,0.001052724,0.0002185348,0.0002175326,0.000003099513,0.0004894561,0.0006646762,0.00000459156],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001436794,"about_ca_system_score_gemma":0.0003644043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007550454,"about_ca_topic_score_gemma":0.00003589452,"domain_scores_codex":[0.9956501,0.00138075,0.0008720431,0.00106592,0.00009827632,0.0009329386],"domain_scores_gemma":[0.9980648,0.000185596,0.000373921,0.001120526,0.00008276887,0.0001724371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002935425,0.00005707238,0.000005709667,0.001898807,0.0002598098,0.00001418046,0.000007227491,0.00001010464,0.00792494,0.01518485,0.0000297302,0.9745782],"study_design_scores_gemma":[0.0004017602,0.0003360321,3.73699e-7,0.0002918598,0.0005277458,0.00009730387,0.000003857755,0.0002123888,0.002873527,0.01031448,0.9840665,0.0008742168],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.000003059837,0.4928205,0.5054982,0.00002433355,0.0003786767,0.0007837676,0.00008624729,0.00001281139,0.0003924752],"genre_scores_gemma":[0.000008269578,0.5012571,0.4952473,0.000282162,0.0002573653,0.0006070358,0.001803654,0.0001262514,0.0004109037],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.9840367,"threshold_uncertainty_score":0.9995561,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4253005829","doi":"10.1007/978-1-4939-9597-4_1","title":"Introduction to the Immune System","year":2019,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada","funders":"","keywords":"Multicellular organism; Immune system; Organism; Biology; Acquired immune system; Innate immune system; Immunity; Mechanism (biology); Autoimmunity; Immunology; Cell; Genetics; Philosophy","retraction":null,"screen_n_in":null,"score":{"opus":0.02499319325832197,"gpt":0.4248316836432698,"spread":0.3998384903849478,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002907039,0.00009548695,0.0002883707,0.0001715335,0.00002024179,0.000006861818,0.0001722511,0.0001177048,0.000847045],"category_scores_gemma":[0.0003389097,0.00006296773,0.00008056262,0.0004172438,0.00004780572,0.000007369881,0.000106176,0.0003010177,0.0002636261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001359351,"about_ca_system_score_gemma":0.00003753863,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007416773,"about_ca_topic_score_gemma":0.000002735943,"domain_scores_codex":[0.9977252,0.00137152,0.0002184325,0.0003202846,0.00009614301,0.0002683778],"domain_scores_gemma":[0.9990042,0.0001342414,0.00003089585,0.0007236101,0.00005935802,0.00004763381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001598,0.00001705069,0.0007253513,0.00003052251,0.00003476245,0.00001039085,0.00009338553,0.00003178262,0.9412916,0.004788946,0.00007441542,0.05274196],"study_design_scores_gemma":[0.0006518912,0.0004692931,0.00123099,0.00002296563,0.00001454825,0.0001286792,0.0001840534,0.000362849,0.7583575,0.0002653916,0.2382202,0.00009162333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1600828,0.002128687,0.8042434,0.02022935,0.001871959,0.00202028,0.000001960715,0.00007532763,0.009346238],"genre_scores_gemma":[0.1032637,0.00005032661,0.878276,0.0014813,0.001353313,0.0002394612,0.00003113293,0.00007517128,0.0152296],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.2381458,"threshold_uncertainty_score":0.9274549,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W178437326","doi":"10.1007/978-1-59745-257-1_11","title":"Specialized Techniques for Site-Directed Mutagenesis in Cyanobacteria","year":2007,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":163,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Saint Paul University","funders":"National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences","keywords":"Insertional mutagenesis; Mutagenesis; Biology; Genetics; Gene; Transformation (genetics); Chromosome; Homologous recombination; Cyanobacteria; Genome; Mutation; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01603430489753038,"gpt":0.3813462581284322,"spread":0.3653119532309018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002234573,0.0002305373,0.0003581625,0.0002337755,0.00003054998,0.00001043007,0.0002700082,0.0004612792,0.00002274129],"category_scores_gemma":[0.0007351884,0.0002298707,0.0001259373,0.0002761592,0.0000792947,0.000002308087,0.0001296167,0.0001062513,0.000001307725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003622843,"about_ca_system_score_gemma":0.00006536546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005642452,"about_ca_topic_score_gemma":0.0002233181,"domain_scores_codex":[0.9980507,0.0003495563,0.000442524,0.0005780602,0.00004966072,0.0005294388],"domain_scores_gemma":[0.9992908,0.00009077074,0.0001101571,0.0003657617,0.00007283103,0.00006971803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002872336,0.00007453212,0.000358345,0.00001917531,0.00001594424,0.00001429167,0.00002859693,0.000001056516,0.9709515,0.0008899902,0.000006254985,0.02735306],"study_design_scores_gemma":[0.0006692818,0.0002739675,0.0001956,0.00001544906,0.00001048638,0.00001550327,0.00002366052,0.00003437273,0.9627219,0.005520059,0.03025474,0.0002649082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2476269,0.0002318965,0.7506905,0.00003984942,0.0001899826,0.0004804819,0.00001892155,0.00003534683,0.0006860932],"genre_scores_gemma":[0.1249455,0.000123225,0.8738785,0.0004932301,0.0001190539,0.0001802018,0.0001339234,0.00004503611,0.00008123472],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.123188,"threshold_uncertainty_score":0.9373856,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W130819592","doi":"10.1007/978-1-61779-591-6_3","title":"DNA Barcodes for Insects","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; DNA barcoding; Biology; Mitochondrial DNA; Identification (biology); Cytochrome c oxidase subunit I; Computational biology; Evolutionary biology; Gene; Computer science; Genetics; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.03250248370586483,"gpt":0.3754804760468378,"spread":0.3429779923409729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014005,0.0002180713,0.0002729093,0.00009965154,0.00005233156,0.000006319535,0.0002546666,0.0004807982,0.00001923931],"category_scores_gemma":[0.0007784633,0.0001982593,0.0001523727,0.0001033115,0.0001753587,0.000004119079,0.0001430278,0.0001387861,0.000008136102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001665241,"about_ca_system_score_gemma":0.00004277844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001108496,"about_ca_topic_score_gemma":0.000007340493,"domain_scores_codex":[0.9978625,0.0008078906,0.0002777297,0.0004074901,0.00002745366,0.0006170053],"domain_scores_gemma":[0.9992412,0.000145781,0.0000826918,0.0003844808,0.00004374545,0.0001020491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009779218,0.0001171392,0.01937783,0.00001597614,0.00006912338,0.000001442567,0.00004731228,0.000005321823,0.9169347,0.004970651,0.00007055722,0.05829219],"study_design_scores_gemma":[0.0005333801,0.0002835845,0.0003317172,0.000005583113,0.00001631239,0.000018836,0.00002445662,0.00001590607,0.7299472,0.002434399,0.266113,0.0002755636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.08687171,0.002906533,0.9005768,0.0001886027,0.0006105471,0.000416678,0.0000199486,0.000017413,0.008391745],"genre_scores_gemma":[0.5569609,0.00003721825,0.4414556,0.0009505348,0.000225259,0.000185116,0.0001083829,0.0000180819,0.00005888915],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.4700892,"threshold_uncertainty_score":0.8084781,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W177663743","doi":"10.1007/978-1-61779-591-6_11","title":"DNA Barcoding Methods for Land Plants","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"DNA barcoding; Biology; Barcode; Clade; Evolutionary biology; DNA extraction; Environmental DNA; Internal transcribed spacer; DNA sequencing; Computational biology; DNA; Polymerase chain reaction; Ecology; Genetics; Gene; Phylogenetics; Biodiversity; Computer science; Phylogenetic tree","retraction":null,"screen_n_in":null,"score":{"opus":0.04289385290436788,"gpt":0.418568937045219,"spread":0.3756750841408511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001467424,0.0001635419,0.0002226044,0.00009316237,0.00006243925,0.000009207509,0.0002058646,0.0003359284,0.00003376921],"category_scores_gemma":[0.0003921333,0.0001580917,0.0001105832,0.0000832926,0.00006606979,0.000002987404,0.0001445541,0.00009862634,0.000002846915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001079697,"about_ca_system_score_gemma":0.00002094353,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001006127,"about_ca_topic_score_gemma":0.000003699409,"domain_scores_codex":[0.9981268,0.000895674,0.00021286,0.0003078078,0.0000356363,0.0004212044],"domain_scores_gemma":[0.9994248,0.0000960066,0.00007529193,0.0002758524,0.00003329134,0.00009480191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005154718,0.00001991965,0.02734705,0.00001160178,0.00003891648,4.83698e-7,0.00006655157,0.00003601874,0.9287814,0.001143334,0.00008980918,0.04241332],"study_design_scores_gemma":[0.0007161452,0.0001177419,0.00467413,0.000005152127,0.00002238378,0.00002092688,0.00005073548,0.00008672051,0.8138475,0.003861887,0.1763321,0.000264538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1055897,0.001667305,0.8912112,0.00006399549,0.0005614547,0.0002200888,0.00002478884,0.000009253901,0.0006521654],"genre_scores_gemma":[0.06941526,0.00004830849,0.9295096,0.0005045285,0.0001656274,0.00002793154,0.0001742641,0.00001782877,0.0001366017],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1762423,"threshold_uncertainty_score":0.6446793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2407344160","doi":"10.1007/978-1-60327-164-6_15","title":"Measurement of the Rate of Attachment of Bacteriophage to Cells","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Public Health Agency of Canada","funders":"","keywords":"Bacteriophage; Materials science; Environmental science; Chemistry; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01916098790587909,"gpt":0.3538266140090989,"spread":0.3346656261032198,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008439625,0.00007749981,0.0002010461,0.0000347736,0.00001147925,0.000001352933,0.0002330838,0.00005111717,0.0002179209],"category_scores_gemma":[0.00006044505,0.00005626541,0.00008723206,0.0001944934,0.0000970284,0.00001343997,0.0001280279,0.00006722924,0.000003676425],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005670343,"about_ca_system_score_gemma":0.000007774715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001940967,"about_ca_topic_score_gemma":0.00002409727,"domain_scores_codex":[0.9988027,0.0005505735,0.0003149327,0.0001524041,0.00005251273,0.0001268811],"domain_scores_gemma":[0.9995229,0.00002288944,0.0001418455,0.000274596,0.00001375047,0.00002404088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001646947,0.0000817629,0.0004748387,0.000004655682,0.00000708833,5.183468e-7,0.00009252604,0.0001737283,0.9887971,0.00006427637,0.00001687822,0.01027014],"study_design_scores_gemma":[0.0001063409,0.0001497189,0.06869905,0.00001997311,0.000008167958,8.817242e-7,0.000009439095,0.000007516864,0.9293344,0.0002037278,0.001416152,0.00004460233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7775127,0.00005123666,0.2206687,0.0002936862,0.0002146535,0.0002659622,0.000008717238,0.00000260638,0.0009817508],"genre_scores_gemma":[0.7671384,0.000006373649,0.2325161,0.0002943204,0.000002801701,0.000003864814,4.065038e-7,0.00000346844,0.00003430099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06822421,"threshold_uncertainty_score":0.2386081,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W196210671","doi":"10.1007/978-1-60761-863-8_15","title":"The Guideline of the Design and Validation of MiRNA Mimics","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Canadian Institutes of Health Research","keywords":"microRNA; Gene silencing; Biology; Gene; Computational biology; Gene expression; RNA; RNA silencing; Messenger RNA; RNA interference; Endogeny; Untranslated region; Genetics; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02093197367913341,"gpt":0.3739376272057808,"spread":0.3530056535266474,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001424501,0.00008260787,0.0001224159,0.0000267701,0.00003179472,0.000003957902,0.0002848081,0.0001656099,0.000003095376],"category_scores_gemma":[0.0006642725,0.00004934757,0.00006081846,0.00007852907,0.0002824428,0.000001018668,0.0001478844,0.0001143549,2.096698e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001877382,"about_ca_system_score_gemma":0.00004266825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002312722,"about_ca_topic_score_gemma":0.00001746581,"domain_scores_codex":[0.998735,0.0006357633,0.0003065197,0.0001677028,0.00003834158,0.0001167253],"domain_scores_gemma":[0.9992588,0.00009592007,0.0001415052,0.0003839514,0.000104346,0.00001545664],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003426766,0.00001196573,0.001364519,0.000003194078,0.00001898219,1.798662e-7,0.00001689937,0.00007042286,0.9880239,0.0006072908,0.00006906197,0.009779287],"study_design_scores_gemma":[0.0001493179,0.0001282517,0.0003609136,0.000003812456,0.00001000585,0.000006499365,0.00002039945,0.0002477323,0.9912928,0.003588486,0.004137496,0.00005427642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5082442,0.0004284363,0.4907839,0.0001826173,0.0001803756,0.0001156991,0.00000218409,0.000001322891,0.00006133668],"genre_scores_gemma":[0.4105254,0.0002345235,0.5889366,0.0001952276,0.00003050936,0.00001310133,0.000006876775,0.00001216807,0.00004560894],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.09815266,"threshold_uncertainty_score":0.2012336,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2760997929","doi":"10.1007/978-1-4939-7401-6_8","title":"In Vitro Tumorigenic Assay: Colony Forming Assay for Cancer Stem Cells","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":151,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"China Scholarship Council; Cancerfonden","keywords":"Clonogenic assay; In vitro; Cancer stem cell; Stem cell; Biology; Cancer cell; Agarose; Cancer; Population; Molecular biology; Cancer research; Cell biology; Medicine; Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05024480712806854,"gpt":0.4413849971207511,"spread":0.3911401899926826,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003174213,0.0001978676,0.0006789602,0.0001875291,0.00008627382,0.00001881496,0.0002542555,0.0002216714,0.0000505692],"category_scores_gemma":[0.0003215313,0.0001765151,0.0001893622,0.000107944,0.000149184,0.00004116997,0.0001184622,0.0002722595,0.000003089183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002366968,"about_ca_system_score_gemma":0.0001991986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009001857,"about_ca_topic_score_gemma":0.0003194501,"domain_scores_codex":[0.9979872,0.0005641785,0.0003850436,0.000468181,0.00007820175,0.0005171608],"domain_scores_gemma":[0.9987414,0.0002816228,0.0002121923,0.0006046192,0.00006500461,0.00009511909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002778655,0.00004752527,0.0008762912,0.00007597113,0.00004726406,0.00007100637,0.00006438752,0.000006533845,0.8298331,0.0003511511,0.00008267885,0.1682662],"study_design_scores_gemma":[0.001903858,0.0001458944,0.0001787006,0.00004462781,0.00007771931,0.00001321141,0.00003748099,0.0003819042,0.9034309,0.001527,0.09208614,0.0001725913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04616321,0.003679121,0.9433693,0.002059495,0.002029011,0.001323536,0.00007369264,0.00002161024,0.001280971],"genre_scores_gemma":[0.05299202,0.0003657764,0.9427696,0.001529378,0.0002134479,0.00062604,0.00001372399,0.00005467513,0.00143527],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1680936,"threshold_uncertainty_score":0.7198078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2415803807","doi":"10.1007/978-1-61737-992-5_17","title":"MRI Phenotyping of Genetically Altered Mice","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Toronto Centre for Phenogenomics; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Phenotype; Computational biology; Biology; Genetic similarity; Genetically modified organism; Similarity (geometry); Set (abstract data type); Genetically engineered; Genetics; Computer science; Image (mathematics); Artificial intelligence; Gene; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01715358076366364,"gpt":0.3857013743178055,"spread":0.3685477935541419,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006336629,0.000131453,0.0001886602,0.0001027871,0.00002143809,0.000005255036,0.0002992899,0.0002997793,0.00004736624],"category_scores_gemma":[0.0003134077,0.0001261628,0.0000823291,0.0001526749,0.0001580829,0.000001159921,0.0001259025,0.0001890497,0.000002476916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000505113,"about_ca_system_score_gemma":0.00006511215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001127139,"about_ca_topic_score_gemma":0.00001505671,"domain_scores_codex":[0.9985656,0.0004392575,0.0003144541,0.000405889,0.00005270621,0.000222135],"domain_scores_gemma":[0.9992327,0.00002841737,0.0001155932,0.0004873796,0.00007697979,0.00005892892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003918153,0.00003921404,0.001005742,0.000008766704,0.00001485652,5.548341e-7,0.00001957055,0.00002461832,0.9605472,0.002756198,0.00006740569,0.03547666],"study_design_scores_gemma":[0.0003566988,0.00007542798,0.001078781,0.000005421355,0.000007302477,0.000005953928,0.0000180242,0.0002866976,0.9681357,0.002495058,0.02739719,0.0001377097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1702944,0.0004738927,0.8267004,0.0001725466,0.0004471425,0.0001305103,0.000003726671,0.000006703534,0.001770652],"genre_scores_gemma":[0.2987402,0.00007609992,0.7005787,0.000336861,0.0001026971,0.00003395986,0.00003368483,0.00001880248,0.0000789962],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1284458,"threshold_uncertainty_score":0.514477,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W13404829","doi":"10.1007/978-1-62703-727-3_22","title":"A Prognostic Test to Predict the Risk of Metastasis in Uveal Melanoma Based on a 15-Gene Expression Profile","year":2013,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Cancer Institute","keywords":"Medicine; Melanoma; Oncology; Internal medicine; Metastasis; Disease; Clinical trial; Adjuvant; Adjuvant therapy; Pathology; Cancer; Cancer research","retraction":null,"screen_n_in":null,"score":{"opus":0.01871194983739567,"gpt":0.3667767048026157,"spread":0.34806475496522,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001205783,0.0001790751,0.0004607198,0.0002681088,0.00003090368,0.000003112032,0.0001486239,0.000215751,0.0001382797],"category_scores_gemma":[0.003337325,0.0001065662,0.0001032129,0.0003894971,0.0001222442,0.00001265153,0.00007451813,0.0002859944,0.00002599604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005583788,"about_ca_system_score_gemma":0.00008811412,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001678666,"about_ca_topic_score_gemma":0.00001881185,"domain_scores_codex":[0.9966211,0.002268448,0.0003520943,0.0003673815,0.00009922103,0.0002917292],"domain_scores_gemma":[0.9980609,0.001217255,0.0001196257,0.0004667924,0.00005638627,0.00007908631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001921447,0.0006750373,0.6118395,0.00002103519,0.00006755059,0.00008360631,0.00008615835,0.0000687374,0.370355,0.00002308828,0.00003067265,0.01655744],"study_design_scores_gemma":[0.002763167,0.004001295,0.3197543,0.0001251182,0.0001957766,0.00001785061,0.00004552327,0.001940665,0.6699232,0.0009287622,0.0001793996,0.0001248706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.871356,0.000320066,0.1242606,0.0008590835,0.0000947991,0.002421694,0.00004077029,0.00002089118,0.0006260698],"genre_scores_gemma":[0.518138,0.000005630025,0.4808037,0.0003670577,0.00001011447,0.0006155228,0.00002512447,0.00001292551,0.00002191089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3565431,"threshold_uncertainty_score":0.4345642,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4396219636","doi":"10.1007/978-1-0716-3581-0_26","title":"BOLD v4: A Centralized Bioinformatics Platform for DNA-Based Biodiversity Data","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":147,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; Data science; Biodiversity; Identification (biology); Data management; Resource (disambiguation); Biological data; DNA barcoding; Geography; Computer science; Biology; Evolutionary biology; Ecology; Data mining; Bioinformatics","retraction":null,"screen_n_in":null,"score":{"opus":0.05916941792184425,"gpt":0.3580988747862043,"spread":0.29892945686436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001063559,0.0002075938,0.0002569914,0.000097328,0.0001212779,0.00002911364,0.0007621989,0.0001729752,0.0003288094],"category_scores_gemma":[0.0001845631,0.0001909057,0.00009972358,0.0002678058,0.0004866748,0.0001545604,0.001209891,0.0001562947,0.0002329964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002508769,"about_ca_system_score_gemma":0.000008225805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001029677,"about_ca_topic_score_gemma":0.0000235195,"domain_scores_codex":[0.9984751,0.000160373,0.000262322,0.0005406682,0.0001220571,0.0004394632],"domain_scores_gemma":[0.9989933,0.0003009124,0.00005472599,0.0005759973,0.000002801524,0.00007226954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000319233,0.0005197128,0.4641695,0.0004536446,0.0004371952,0.0001930291,0.00151944,0.001037373,0.3649153,0.001538969,0.037934,0.1269626],"study_design_scores_gemma":[0.003825477,0.0007699697,0.02813623,0.00009713781,0.0003693315,0.00002031746,0.0007820351,0.09715293,0.2250208,0.007477968,0.6345623,0.001785537],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04175824,0.0004298024,0.9541233,0.0007169071,0.0005017132,0.0006999365,0.0008476479,0.0001047,0.0008177611],"genre_scores_gemma":[0.002150893,0.00006690803,0.9964837,0.0008651006,0.000009517402,0.00001769121,0.0003506501,0.000009103898,0.00004644441],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.5966282,"threshold_uncertainty_score":0.7784909,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3200530198","doi":"10.1007/978-1-0716-1566-9_3","title":"Fixed- and Random-Effects Models","year":2021,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Meta-analysis and systematic reviews","field":"Decision Sciences","cited_by":142,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Raincoast Conservation Foundation; University of British Columbia","funders":"","keywords":"Random effects model; Statistics; Fixed effects model; Variance (accounting); Mathematics; Estimator; Sample size determination; Meta-analysis; Econometrics; Standard error; Panel data","retraction":null,"screen_n_in":null,"score":{"opus":0.7734362790399716,"gpt":0.6695250715523596,"spread":0.103911207487612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","metaepi_broad"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.1970879,0.0007341183,0.02140591,0.0009509634,0.00005499061,0.0003375356,0.001904031,0.0007674099,0.0008381822],"category_scores_gemma":[0.0894786,0.0003465308,0.004589933,0.002038803,0.0001423318,0.00004776939,0.0006400992,0.000567464,0.0001631496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003826514,"about_ca_system_score_gemma":0.0001658722,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006099539,"about_ca_topic_score_gemma":0.000003275263,"domain_scores_codex":[0.7888997,0.197247,0.01017458,0.002210386,0.00104926,0.000419027],"domain_scores_gemma":[0.9614932,0.02933012,0.00424447,0.004428119,0.00034707,0.0001570425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[7.694711e-7,0.00001458462,0.000004679703,0.001765555,0.0003319424,0.00006179827,0.00002470507,0.000006511427,0.00002037195,0.01067606,0.0004250701,0.9866679],"study_design_scores_gemma":[0.0002149644,0.00002341436,2.901102e-7,0.001414881,0.001056792,0.00007923706,0.0000110206,0.0007977434,0.000009035842,0.04373096,0.9523448,0.0003168551],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[3.596062e-7,0.5072947,0.4903696,0.00001700702,0.000249632,0.0007873669,0.000005485045,0.00000209518,0.001273816],"genre_scores_gemma":[1.139116e-7,0.5528014,0.4461201,0.0001119997,0.00002539942,0.0001924631,0.00001794918,0.00001886573,0.0007117484],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9863511,"threshold_uncertainty_score":0.9998987,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2903963813","doi":"10.1007/978-1-4939-8994-2_29","title":"Description of Ovariectomy Protocol in Mice","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Estrogen and related hormone effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Menopause; Isoflurane; Estrogen; Surgical Menopause; Medicine; Physiology; Guideline; Protocol (science); Bioinformatics; Gynecology; Endocrinology; Biology; Pathology; Alternative medicine; Anesthesia","retraction":null,"screen_n_in":null,"score":{"opus":0.01779242734869368,"gpt":0.391586534193793,"spread":0.3737941068450993,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009699956,0.0001449033,0.0002239158,0.0001603884,0.00001708752,0.000004139406,0.0001902425,0.0004138589,0.00001396832],"category_scores_gemma":[0.000284379,0.000131544,0.00007238812,0.0002836003,0.0002463582,0.000002194649,0.0001134157,0.0001655019,0.000004246233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000170919,"about_ca_system_score_gemma":0.00005889054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006286342,"about_ca_topic_score_gemma":0.00002234614,"domain_scores_codex":[0.9979797,0.00102123,0.000331728,0.0003559921,0.00004330227,0.0002680583],"domain_scores_gemma":[0.9995108,0.00002614108,0.0001002047,0.0002647358,0.00006140312,0.00003673857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002262553,0.00008198025,0.006085688,0.00001965893,0.00002078104,0.000007190968,0.0000360771,0.000008804834,0.9871859,0.0005441374,0.0000239944,0.005759561],"study_design_scores_gemma":[0.001068052,0.0008372226,0.001276456,0.00002156558,0.000005843886,0.00001523069,0.00001234069,0.0001196297,0.9902195,0.001756935,0.004525181,0.0001420303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4692272,0.0002666006,0.5164639,0.00004190995,0.0001751291,0.0106885,0.000002722662,0.00001111794,0.003122908],"genre_scores_gemma":[0.2794012,0.00001478173,0.7120975,0.0002080275,0.00009787388,0.008012585,0.00003047877,0.00003390637,0.0001036979],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1956336,"threshold_uncertainty_score":0.5364208,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2638695","doi":"10.1007/978-1-62703-709-9_23","title":"RNA–Protein Interactions: An Overview","year":2013,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"RNA; Computational biology; RNA-binding protein; Computer science; Nucleic acid structure; Biology; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.1369502003285953,"gpt":0.533965066480463,"spread":0.3970148661518678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001523697,0.0005532483,0.001352823,0.0003640558,0.00006054598,0.00005155547,0.000845846,0.0008317576,0.0001578904],"category_scores_gemma":[0.0007515117,0.0004614928,0.0005275268,0.0003527705,0.0001542312,0.000006582631,0.0004775143,0.0007558971,0.00007119517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007238487,"about_ca_system_score_gemma":0.000262701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001364098,"about_ca_topic_score_gemma":0.00003070668,"domain_scores_codex":[0.9926419,0.004762982,0.0007742739,0.001037293,0.0001047928,0.0006787303],"domain_scores_gemma":[0.9981537,0.00008616391,0.0002801036,0.001187881,0.00008897727,0.000203202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005345703,0.0000469402,0.000001296338,0.000897329,0.00009369489,0.00001413309,0.000002245737,5.828597e-7,0.2662379,0.0006538811,0.00004984251,0.7319968],"study_design_scores_gemma":[0.00017234,0.0003108751,5.014779e-7,0.001225129,0.00006049143,0.00005804377,0.000007219518,0.00001525365,0.01105543,0.001054685,0.9855458,0.0004942505],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001070881,0.8607641,0.1373975,0.00001758479,0.0002017979,0.001008535,0.0000185033,0.00001660869,0.0004682968],"genre_scores_gemma":[7.147415e-7,0.7496982,0.2475879,0.0001133445,0.0001508062,0.0006736121,0.0003993993,0.00007810439,0.001297938],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9854959,"threshold_uncertainty_score":0.9997837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W112811424","doi":"10.1007/978-1-61779-027-0_1","title":"Omics Technologies, Data and Bioinformatics Principles","year":2011,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ontario Institute for Cancer Research","keywords":"Omics; Proteomics; Genomics; Data science; Computer science; Bioinformatics; Computational biology; Biology; Genome; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.1420693310681263,"gpt":0.454607042046265,"spread":0.3125377109781386,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002894368,0.0006195225,0.001423479,0.0004966901,0.00006458734,0.00004607634,0.002385787,0.001998036,0.000008410875],"category_scores_gemma":[0.002990336,0.0004856187,0.0002002228,0.0003670671,0.0009910514,0.00000621937,0.005128967,0.0007620493,0.00001751097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003783973,"about_ca_system_score_gemma":0.0004573784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001451091,"about_ca_topic_score_gemma":0.00001670177,"domain_scores_codex":[0.9960855,0.0007596642,0.001313695,0.000909009,0.0001399337,0.0007921579],"domain_scores_gemma":[0.996736,0.0001492435,0.0004532484,0.002426928,0.00007795769,0.0001566593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007971607,0.00004045382,0.00001735805,0.003020404,0.0001441229,0.000007185239,0.00001943653,9.150163e-8,0.0005666396,0.0004492133,0.0001233313,0.9956038],"study_design_scores_gemma":[0.0002343454,0.0002706892,0.000001050595,0.0005065529,0.0001310926,0.0000869802,0.00006979313,0.0002759776,0.0009964658,0.000681424,0.9961953,0.0005502923],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000003189718,0.7449695,0.2529846,0.00002276462,0.0002128356,0.0006394007,0.0002529322,0.00003326783,0.0008815383],"genre_scores_gemma":[2.128724e-7,0.5538735,0.4445558,0.00004608067,0.00003754143,0.00004361387,0.001328874,0.00003552257,0.00007882857],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.996072,"threshold_uncertainty_score":0.9997596,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1882164115","doi":"10.1007/978-1-59745-583-1_18","title":"Fluorescent In Situ Hybridization Protocols in Drosophila Embryos and Tissues","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"In situ hybridization; RNA; Biology; In situ; Molecular biology; Cell biology; Computational biology; Messenger RNA; Gene; Chemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0311731637588023,"gpt":0.4109291857998849,"spread":0.3797560220410826,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009051714,0.0001532034,0.0002549278,0.0002256117,0.00002991673,0.000008697872,0.0001671757,0.0002169347,0.000003963748],"category_scores_gemma":[0.0005387871,0.0001505095,0.00003491617,0.0002444782,0.0001547874,0.000003775036,0.0001662236,0.0001972913,0.0000014656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002998477,"about_ca_system_score_gemma":0.00006654782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001049916,"about_ca_topic_score_gemma":0.0001528375,"domain_scores_codex":[0.9978004,0.0009645935,0.0003185008,0.0004665648,0.00007011108,0.0003798034],"domain_scores_gemma":[0.9995534,0.00003314492,0.00004904115,0.0002670868,0.0000320049,0.00006535846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000083942,0.00006632963,0.05167906,0.00001939782,0.000005353954,0.0001062182,0.00004637385,0.0000510061,0.9422516,0.0002010957,0.00001227737,0.005477389],"study_design_scores_gemma":[0.001187088,0.0003216933,0.02328546,0.00004033509,0.000001202882,0.00005085227,0.00002178922,0.000328776,0.9721431,0.0008298168,0.001591474,0.0001984757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9331327,0.0008286734,0.06313605,0.0001433755,0.00002568382,0.002457219,0.000002041805,0.000006256828,0.000268014],"genre_scores_gemma":[0.7109904,0.0006708691,0.2851977,0.0003430982,0.00006838213,0.002409411,0.00008020135,0.00003997687,0.0002000181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2221423,"threshold_uncertainty_score":0.6137599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3013546250","doi":"10.1007/978-1-0716-0520-2_6","title":"Stereolithography 3D Bioprinting","year":2020,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":120,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Okanagan University College; Kelowna General Hospital; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Stereolithography; 3D bioprinting; Nanotechnology; Computer science; Materials science; Tissue engineering; Systems engineering; Biomedical engineering; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.03844693241102008,"gpt":0.4035795920334167,"spread":0.3651326596223966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001061438,0.0001353488,0.0002315667,0.0001891427,0.00001880508,0.00001441653,0.0003543728,0.0001806651,0.00009333969],"category_scores_gemma":[0.0009872444,0.0001326963,0.00007102588,0.0007202024,0.000149992,0.00001531799,0.0001969273,0.0004618317,0.00003303038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001877856,"about_ca_system_score_gemma":0.00001117116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008158755,"about_ca_topic_score_gemma":5.397956e-7,"domain_scores_codex":[0.9984016,0.0005161647,0.0002742102,0.0002826689,0.0000897158,0.0004356139],"domain_scores_gemma":[0.9993613,0.0002376088,0.00001858183,0.0002165654,0.00002055787,0.000145415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000003887457,0.000006897694,0.00761261,0.00006239212,0.00002822119,0.00002936584,0.0001025169,0.00023487,0.8285536,0.001392255,0.00001742235,0.161956],"study_design_scores_gemma":[0.0009787214,0.0002114538,0.006125131,0.00006151531,0.00001678833,0.00001512753,0.00009268082,0.1318619,0.7809078,0.009920203,0.06899052,0.0008181226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03612529,0.0004975647,0.9575111,0.0003974612,0.0001694585,0.000117348,0.000001748005,0.0002168734,0.004963147],"genre_scores_gemma":[0.06510404,0.00003569895,0.9343054,0.0004431084,0.00005342119,0.00002053289,0.000003389105,0.0000303127,0.000004070274],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1611379,"threshold_uncertainty_score":0.5411198,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1553962779","doi":"10.1007/978-1-60327-214-8_1","title":"The Development of Germline Stem Cells in Drosophila","year":2008,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":120,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Stem cell; Biology; Cell biology; Germline; Adult stem cell; Stem cell factor; Cell fate determination; Cellular differentiation; Genetics; Progenitor cell; Transcription factor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.05063912849039402,"gpt":0.3861274232861992,"spread":0.3354882947958052,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.003377184,0.0005763781,0.002452528,0.0006169248,0.0001205667,0.000005264336,0.001069586,0.001556781,0.00003440554],"category_scores_gemma":[0.0001873667,0.0003960914,0.0004215884,0.0006250257,0.0004895515,0.00001225267,0.0004733026,0.001146792,0.0001238551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001993923,"about_ca_system_score_gemma":0.0007950062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001414485,"about_ca_topic_score_gemma":0.0000201907,"domain_scores_codex":[0.9851732,0.01136203,0.002042662,0.0006487807,0.0000385715,0.0007347732],"domain_scores_gemma":[0.9967003,0.001703928,0.0006933904,0.0008296956,0.00005452639,0.00001809538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003221116,0.00006774293,9.380545e-7,0.0004515039,0.0001951065,0.00003221383,0.0001453584,6.256759e-7,0.2026879,0.001440939,0.00001365206,0.7949318],"study_design_scores_gemma":[0.0003980207,0.00007443448,8.357832e-7,0.0009594495,0.00004456497,0.0001280776,0.00002386004,0.000001143694,0.2070136,0.0004095762,0.790619,0.0003274171],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007116987,0.9511756,0.04656327,0.00001135726,0.001162598,0.0008553193,0.00001610653,0.000019576,0.0001249444],"genre_scores_gemma":[0.000002618878,0.8744468,0.1246844,0.00002759782,0.000007924368,0.0002371867,0.00006746659,0.00005832775,0.000467651],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7946044,"threshold_uncertainty_score":0.9998491,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W34714686","doi":"10.1007/978-1-60761-863-8_3","title":"The Principles of MiRNA-Masking Antisense Oligonucleotides Technology","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Canadian Institutes of Health Research","keywords":"Masking (illustration); Oligonucleotide; microRNA; Computer science; Computational biology; Biology; Genetics; Art; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01559855754383704,"gpt":0.3636516161898383,"spread":0.3480530586460013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001032965,0.0001704386,0.0002349799,0.0001480475,0.00007400719,0.00001163712,0.000551237,0.0003939766,0.00001256715],"category_scores_gemma":[0.0009817173,0.0001289239,0.0001127574,0.0002233125,0.0005690985,0.000001907251,0.0003167027,0.0003039494,0.000004854433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004854233,"about_ca_system_score_gemma":0.00005886174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002355774,"about_ca_topic_score_gemma":0.0001372269,"domain_scores_codex":[0.9984752,0.0003491567,0.0003914953,0.0003832188,0.00005163574,0.0003493079],"domain_scores_gemma":[0.9989199,0.00008949697,0.0001580153,0.000686251,0.0001098997,0.00003646224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003576252,0.00002642707,0.007304137,0.00000541036,0.0000394058,0.000007603443,0.00001455599,0.00002033935,0.9580454,0.008349573,0.00002297021,0.02612838],"study_design_scores_gemma":[0.0002036982,0.0002020375,0.0009191945,0.000009185241,0.000008639423,0.00003949781,0.00006384201,0.00008540402,0.9559919,0.003049022,0.03928411,0.0001434783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8545158,0.001133848,0.1417064,0.0002809691,0.0004383516,0.0001495706,0.000004845482,0.00001230371,0.001757973],"genre_scores_gemma":[0.674746,0.0002598477,0.3244876,0.0001320227,0.00005947039,0.00002942874,0.00001109038,0.00002210782,0.0002524257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1827812,"threshold_uncertainty_score":0.5257365,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2727952875","doi":"10.1007/978-1-61779-827-6_8","title":"Fourier Transform Infrared Spectroscopy for Molecular Analysis of Microbial Cells","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; The Scarborough Hospital","funders":"","keywords":"Fourier transform infrared spectroscopy; Infrared; Fourier transform; Fourier transform spectroscopy; Infrared spectroscopy; Spectroscopy; Materials science; Analytical Chemistry (journal); Chemistry; Physics; Optics; Environmental chemistry; Organic chemistry; Astronomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01558674512583194,"gpt":0.4241593558317131,"spread":0.4085726107058811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00148278,0.0002509374,0.0005640983,0.0003767187,0.00002927072,0.000007273032,0.0004743518,0.0005553819,0.00008822121],"category_scores_gemma":[0.0004236232,0.0002314901,0.000490004,0.0007919469,0.0003840143,0.000003759656,0.0001564296,0.000220944,9.466599e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000456254,"about_ca_system_score_gemma":0.00006474544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001608475,"about_ca_topic_score_gemma":0.000003261639,"domain_scores_codex":[0.9976968,0.0003861535,0.0005176354,0.0004798688,0.0001401819,0.0007794251],"domain_scores_gemma":[0.9989533,0.0001151095,0.0001129278,0.0005470132,0.00009334285,0.0001782696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002040605,0.0001863894,0.0005924064,0.00003163018,0.0004592941,0.000001584119,0.00002556851,0.000005422539,0.9940003,0.001684633,0.0003741811,0.002434528],"study_design_scores_gemma":[0.0004974671,0.0003963237,0.00004031528,0.000006464644,0.0002013636,0.000002048321,0.00001137479,0.0001535774,0.9569398,0.003901876,0.03761237,0.0002370579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.07822133,0.001061496,0.9174683,0.0001135454,0.0001408812,0.0004302638,0.0000823614,0.00001471254,0.002467126],"genre_scores_gemma":[0.02880226,0.0001587274,0.969803,0.0004098433,0.00008775111,0.0001644776,0.0002986126,0.00003632668,0.000238971],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.05233475,"threshold_uncertainty_score":0.9439891,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1602584517","doi":"10.1007/978-1-60327-136-3_1","title":"Expressed Sequence Tags: An Overview","year":2009,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Expressed sequence tag; Biology; Computational biology; Profiling (computer programming); Sequence (biology); cDNA library; DNA sequencing; Genome; Sequence analysis; Complementary DNA; Genetics; Gene; Bioinformatics; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.1444049863806436,"gpt":0.4880965416950171,"spread":0.3436915553143735,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001206746,0.0006913414,0.001730212,0.0001978968,0.00006060916,0.00002530859,0.0009107163,0.00102191,0.00001453944],"category_scores_gemma":[0.000293063,0.0006119727,0.0005182013,0.0002850251,0.000185069,8.034328e-7,0.0003862325,0.000373907,0.000007808375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004242381,"about_ca_system_score_gemma":0.0002431616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002416317,"about_ca_topic_score_gemma":0.00001385401,"domain_scores_codex":[0.9944582,0.002823795,0.0007914918,0.001241869,0.00007895572,0.0006056797],"domain_scores_gemma":[0.9981309,0.00007900173,0.0003296287,0.00126481,0.00006759318,0.0001280642],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006033694,0.00005538631,0.000004543514,0.0006335825,0.0001186558,0.00001950288,0.00001230561,0.000005102027,0.151422,0.0007894894,0.00003060645,0.8469028],"study_design_scores_gemma":[0.0001895349,0.0004148171,0.000003446778,0.000531818,0.0001705601,0.00004515217,0.000007054518,0.000003876665,0.003894757,0.003222514,0.9908461,0.0006703882],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004245516,0.9627811,0.03572736,0.00001582952,0.0002857733,0.0006067859,0.00008632986,0.000008822422,0.0004455317],"genre_scores_gemma":[0.000002130732,0.7168947,0.2821004,0.0002980162,0.0001437481,0.0001470392,0.0002947254,0.00005981042,0.00005943192],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9908155,"threshold_uncertainty_score":0.9996331,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1526348192","doi":"10.1007/978-1-60327-492-0_15","title":"Mammographic Density: A Heritable Risk Factor for Breast Cancer","year":2008,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Digital Radiography and Breast Imaging","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Hospital for Sick Children; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"MAMMOGRAPHIC DENSITY; Breast cancer; Medicine; Cancer; Oncology; Internal medicine; Mammography","retraction":null,"screen_n_in":null,"score":{"opus":0.04474322865054482,"gpt":0.4361555219320246,"spread":0.3914122932814798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004913727,0.0005682081,0.002626602,0.0009390591,0.00006596254,0.00002061639,0.0002469205,0.0006159852,0.00004559526],"category_scores_gemma":[0.0002420907,0.0004457454,0.001560107,0.001122661,0.0002795696,0.00003748513,0.00009234341,0.0006793746,0.000003149186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009601466,"about_ca_system_score_gemma":0.0003033429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001190204,"about_ca_topic_score_gemma":0.00001138221,"domain_scores_codex":[0.9968398,0.000936484,0.0006555112,0.0008021505,0.00009855723,0.0006674817],"domain_scores_gemma":[0.9984246,0.0004244224,0.0003308938,0.0005417288,0.0001074353,0.0001708456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000409927,0.00008528412,0.001065393,0.003057573,0.000595436,0.0001139612,0.00001169942,1.410577e-7,0.0001058078,0.0001089904,0.00002407985,0.9947906],"study_design_scores_gemma":[0.000851248,0.0001964911,0.0004822662,0.004804761,0.0012665,0.003854301,0.000006243701,0.00001172006,0.00006913304,0.001192266,0.9866136,0.0006514144],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001890081,0.8149421,0.1821198,0.00004422504,0.0003071577,0.001150033,0.001158543,0.00005495318,0.000204248],"genre_scores_gemma":[0.000004392739,0.7283202,0.270882,0.0001414204,0.0001046296,0.0003496881,0.00006770094,0.00007494807,0.0000550786],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9941393,"threshold_uncertainty_score":0.9997994,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4306910300","doi":"10.1007/978-1-0716-2815-7_14","title":"MicroRNA Regulatory Network Analysis Using miRNet 2.0","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"","keywords":"microRNA; Gene regulatory network; Computational biology; Context (archaeology); Regulation of gene expression; Biology; Gene; Gene expression; Computer science; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02336332203324069,"gpt":0.3943206813803292,"spread":0.3709573593470885,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002791371,0.0002995413,0.0004955862,0.0005182711,0.0002236885,0.00001950256,0.0006799712,0.0003224768,0.000305507],"category_scores_gemma":[0.000187287,0.0003537387,0.0004158443,0.001895565,0.0001680812,0.000002293928,0.001163961,0.0005735741,0.000002666986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001884667,"about_ca_system_score_gemma":0.0002278743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001267545,"about_ca_topic_score_gemma":0.0000483674,"domain_scores_codex":[0.99384,0.003599053,0.0004948383,0.001002948,0.0002314236,0.000831743],"domain_scores_gemma":[0.9985417,0.00004804953,0.0001778653,0.001026552,0.00007674636,0.0001290472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001173824,0.00005447068,0.0005266856,0.000005751904,0.0005574673,0.00004636495,0.00002253326,0.09729157,0.8979,0.0008266922,0.0001811931,0.002469847],"study_design_scores_gemma":[0.001310636,0.0006449971,0.0003959062,0.000006971789,0.0004000451,0.0001276579,0.0001172826,0.01356261,0.9030432,0.004050137,0.07546283,0.0008777552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0871867,0.004552575,0.9069838,0.00007843562,0.0003788454,0.0003609644,0.00002991207,0.0000204671,0.0004082978],"genre_scores_gemma":[0.1443923,0.00009979076,0.8527073,0.001379849,0.0002125285,0.0002293005,0.0004752155,0.0001100067,0.0003936806],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.08372895,"threshold_uncertainty_score":0.9998915,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}