{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":3129,"total_is_capped":false,"direct_labels_cover":13,"predictions_cover":3129,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"28566060d31a","filters":{"venue":"Methods in molecular biology"}},"results":[{"id":"W114564532","doi":"10.1007/978-1-60327-164-6_7","title":"Enumeration of Bacteriophages by Double Agar Overlay Plaque Assay","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1083,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Enumeration; Agar; Virus quantification; Microbiology; Overlay; Biology; Computer science; Bacteria; Mathematics; Virology; Combinatorics; Genetics","authors":[{"name":"Andrew M. Kropinski","is_ca":true},{"name":"Amanda Mazzocco","is_ca":false},{"name":"Erika J. Lingohr","is_ca":true},{"name":"Roger P. Johnson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01007905393934878,"gpt":0.3533976939878204,"spread":0.3433186400484717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007540283,0.001713237,0.001469892,0.001838168,0.0005103623,0.0008270323,0.0009776196,0.0006424696,0.002944282],"category_scores_gemma":[0.0008564905,0.0005019964,0.0006424895,0.001473944,0.0003737632,0.0006901336,0.001269803,0.001737063,0.003722319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001964927,"about_ca_system_score_gemma":0.0003148483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004210801,"about_ca_topic_score_gemma":0.0006658232,"domain_scores_codex":[0.9982728,0.0002393932,0.0001594751,0.0002680905,0.0008625252,0.0001977389],"domain_scores_gemma":[0.9991183,0.0003300646,0.00007470285,0.000128959,0.0002588035,0.00008924976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005272778,0.00007142163,0.0002508231,0.0001824469,0.00001094143,0.00003822093,0.00007318496,0.0000796683,0.9944531,0.0002355614,0.0001905803,0.00436131],"study_design_scores_gemma":[0.000009031043,0.0002652536,0.002041843,0.0000372729,0.00002232401,0.0001730321,0.0000531737,0.001733012,0.9906511,0.0002439211,0.00474314,0.00002695529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5062793,0.01050623,0.4501404,0.0002836534,0.0006942521,0.002538851,0.003922713,0.003057233,0.02257729],"genre_scores_gemma":[0.4883595,0.01272674,0.4416464,0.0001473912,0.0002077584,0.003596718,0.01221799,0.0006514185,0.04044607],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002944282,"threshold_uncertainty_score":0.009849608,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3080427797","doi":"10.1007/978-1-0716-0826-5_3","title":"Siamese Neural Networks: An Overview","year":2020,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Neural Networks and Applications","field":"Computer Science","cited_by":670,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Krembil Foundation","funders":"","keywords":"Artificial neural network; Computer science; Similarity (geometry); Artificial intelligence; Perceptron; Curse of dimensionality; Representation (politics); Pattern recognition (psychology); Rank (graph theory); Feedforward neural network; Cosine similarity; Euclidean distance; Machine learning; Pearson product-moment correlation coefficient; Convolutional neural network; Mathematics; Statistics","authors":[{"name":"Davide Chicco","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1298686972305546,"gpt":0.4926620052493232,"spread":0.3627933080187686,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001152977,0.001682267,0.001817365,0.002741916,0.0002625823,0.001720656,0.001758426,0.001913285,0.004409975],"category_scores_gemma":[0.001788081,0.0007629931,0.0007792049,0.004644195,0.0009444976,0.003130878,0.001179841,0.00269001,0.002973855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00109121,"about_ca_system_score_gemma":0.001809914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002905438,"about_ca_topic_score_gemma":0.003585491,"domain_scores_codex":[0.9996284,0.00006733792,0.00004693678,0.00007440844,0.0001579954,0.00002482535],"domain_scores_gemma":[0.9991291,0.0004822668,0.00005548657,0.00003390403,0.000250972,0.00004825007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005278106,0.0001259144,0.0001953614,0.008507699,0.0001528085,0.00006256129,0.00003971877,0.003342496,0.0007533041,0.02401846,0.05243002,0.9103189],"study_design_scores_gemma":[0.00003846056,0.0001299243,0.0008964703,0.003496584,0.000177831,0.0006476475,0.0000400525,0.006892344,0.001029084,0.03424134,0.9523349,0.00007516996],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001514992,0.9881621,0.007834039,0.0005941681,0.0005462787,0.00001524237,0.00006322595,0.00004839245,0.002585113],"genre_scores_gemma":[0.001688101,0.9889712,0.005856527,0.0003710794,0.00101272,0.00003183844,0.0001182946,0.00002238898,0.001927873],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004409975,"threshold_uncertainty_score":0.01475281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W99972145","doi":"10.1007/978-1-4939-0799-1_4","title":"Yeast Transformation by the LiAc/SS Carrier DNA/PEG Method","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":653,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Notice; PEG ratio; Saccharomyces cerevisiae; Microtiter plate; Transformation efficiency; Biology; Molecular biology; Genetics; Gene; Business; Political science; Agrobacterium","authors":[{"name":"R. Daniel Gietz","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01528362098769542,"gpt":0.3921334445867319,"spread":0.3768498235990365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004815141,0.001373881,0.001481535,0.001153041,0.000687857,0.0007799185,0.001213817,0.0004952344,0.004850212],"category_scores_gemma":[0.0003678134,0.0005014218,0.0008020072,0.001187529,0.0005490443,0.0003596891,0.0008338344,0.00217713,0.006013589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004700533,"about_ca_system_score_gemma":0.0009600135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002100153,"about_ca_topic_score_gemma":0.002016234,"domain_scores_codex":[0.9994779,0.00007619202,0.00006808154,0.0001297705,0.0001604001,0.00008777397],"domain_scores_gemma":[0.9996691,0.00005646293,0.00005726994,0.0001047606,0.0000472393,0.00006519179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002476459,0.00009848956,0.0001920109,0.0001896619,0.00002253699,0.0001225793,0.00009018133,0.0001188156,0.9851589,0.001171262,0.001189507,0.01139841],"study_design_scores_gemma":[0.00004574919,0.0001003343,0.000487179,0.00001413621,0.00003656094,0.000164059,0.00001841755,0.0006127108,0.9754851,0.0001775466,0.02284118,0.0000171479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4233243,0.004009586,0.4947835,0.001413712,0.001066486,0.002657863,0.01444316,0.0220737,0.03622762],"genre_scores_gemma":[0.6483747,0.007001694,0.215344,0.0004375604,0.0001941975,0.001922945,0.04092852,0.004396064,0.0814004],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004850212,"threshold_uncertainty_score":0.01622558,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897766421","doi":"10.1007/978-1-4939-8728-3_8","title":"16S rRNA Gene Analysis with QIIME2","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":629,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Phylogenetic tree; Biology; Taxonomic rank; 16S ribosomal RNA; Metagenomics; Phylogenetic diversity; Computational biology; Phylogenetics; Tree (set theory); Gene; Ecology; Genetics; Mathematics","authors":[{"name":"Michael Hall","is_ca":true},{"name":"Robert G. Beiko","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01462159567818407,"gpt":0.3630929429158632,"spread":0.3484713472376791,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00359781,0.007189658,0.006230769,0.005369183,0.003711893,0.002692576,0.004382915,0.001886421,0.01424239],"category_scores_gemma":[0.005419184,0.001989458,0.004950291,0.005711342,0.001802106,0.001494122,0.002778854,0.00509955,0.01867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006858053,"about_ca_system_score_gemma":0.003749597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002395506,"about_ca_topic_score_gemma":0.00420702,"domain_scores_codex":[0.9937978,0.001006087,0.001166827,0.001993657,0.001256923,0.0007786612],"domain_scores_gemma":[0.9976649,0.0004781092,0.0002825457,0.0005095294,0.0009129422,0.0001519659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001970037,0.000762019,0.003518919,0.003603285,0.0003758181,0.0002632513,0.0008843833,0.001324653,0.9065514,0.003671301,0.009874575,0.06720034],"study_design_scores_gemma":[0.0003852997,0.002141362,0.01518306,0.0005642612,0.0007423565,0.0005073556,0.00054834,0.01772462,0.8432678,0.007061372,0.111251,0.000623242],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1644376,0.001888674,0.6240706,0.0008454128,0.001430052,0.004913498,0.1491529,0.03251662,0.02074457],"genre_scores_gemma":[0.04888352,0.0009686954,0.8247206,0.0008318553,0.0001513604,0.01019153,0.08948566,0.009105499,0.01566137],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01424239,"threshold_uncertainty_score":0.04764551,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2309028480","doi":"10.1007/978-1-62703-059-5_23","title":"Partial Least Squares Methods: Partial Least Squares Correlation and Partial Least Square Regression","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Spectroscopy and Chemometric Analyses","field":"Chemistry","cited_by":440,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Baycrest Hospital","funders":"","keywords":"Partial least squares regression; Latent variable; Mathematics; Statistics; Partial correlation; Covariance; Multivariate statistics; Data set; Set (abstract data type); Correlation; Computer science","authors":[{"name":"Hervé Abdi","is_ca":false},{"name":"Lynne J. Williams","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03617235603248909,"gpt":0.4266500097395352,"spread":0.3904776537070461,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006655513,0.002723224,0.002447329,0.002371726,0.000913391,0.002909493,0.002288654,0.002590732,0.007061766],"category_scores_gemma":[0.02610346,0.001059424,0.002283111,0.006250781,0.002611293,0.003861309,0.003199729,0.004206762,0.005551214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009892866,"about_ca_system_score_gemma":0.002327259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00230695,"about_ca_topic_score_gemma":0.001938293,"domain_scores_codex":[0.9890596,0.005254666,0.0004432754,0.001809596,0.003176134,0.0002566786],"domain_scores_gemma":[0.9884266,0.006096012,0.001235489,0.001843613,0.002209697,0.0001886115],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002012626,0.0001742316,0.002939152,0.001581586,0.0006825146,0.0002303719,0.000353823,0.1286819,0.005781477,0.2051266,0.03204989,0.6221973],"study_design_scores_gemma":[0.00006230873,0.0001534157,0.00275996,0.0003346653,0.0002158315,0.0006255615,0.0001872662,0.5435049,0.00710902,0.3373555,0.1074287,0.0002629151],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.001106992,0.002128485,0.9936004,0.0003811179,0.0001517484,0.00006099127,0.0002153666,0.0006002293,0.001754817],"genre_scores_gemma":[0.06980299,0.005627151,0.9117077,0.0008321979,0.000865978,0.0007049408,0.001351668,0.001144719,0.007962599],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007061766,"threshold_uncertainty_score":0.03519815,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2745112655","doi":"10.1007/978-1-4939-7219-7_1","title":"ErbB Receptors and Cancer","year":2017,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":431,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"ErbB; Receptor tyrosine kinase; ERBB3; ERBB4; Cancer research; Receptor; Epidermal growth factor receptor; Biology; Epidermal growth factor; Signal transduction; Neuregulin; Tyrosine kinase; Growth factor receptor; Cell biology; Biochemistry","authors":[{"name":"Zhixiang Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.3336806821133151,"gpt":0.6622974962907782,"spread":0.3286168141774631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009013785,0.001466212,0.00166635,0.002871705,0.000321227,0.001697016,0.001037977,0.001330195,0.009041411],"category_scores_gemma":[0.001323788,0.0004601703,0.0004790355,0.002481167,0.0008542606,0.002362957,0.001679758,0.002886202,0.004826768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008958879,"about_ca_system_score_gemma":0.001844839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008477321,"about_ca_topic_score_gemma":0.001872742,"domain_scores_codex":[0.999649,0.00006905524,0.00004204344,0.00004619797,0.0001505075,0.00004309958],"domain_scores_gemma":[0.999643,0.0001604374,0.00004675077,0.00002021738,0.00008427603,0.00004544001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007398371,0.0000597454,0.0000849334,0.01105909,0.00007058524,0.0001087463,0.00006159332,0.0002680781,0.00112542,0.007075954,0.09410007,0.8859118],"study_design_scores_gemma":[0.00001781901,0.00003030792,0.0001692366,0.00206243,0.00005850769,0.000328844,0.00002702819,0.00005168527,0.0002102677,0.003218307,0.9938154,0.00001022678],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000043328,0.9967082,0.0001988171,0.0004550056,0.0008827741,0.000007191787,0.00002254128,0.00001238843,0.001669657],"genre_scores_gemma":[0.000484766,0.9958556,0.0002619569,0.0004702287,0.0008214269,0.00001125232,0.00004313409,0.000003028295,0.002048592],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.009041411,"threshold_uncertainty_score":0.0302465,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2475435998","doi":"10.1007/978-1-59745-548-0_15","title":"Assembling DNA Barcodes","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":389,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; DNA barcoding; Identification (biology); Computational biology; Biology; Kingdom; Evolutionary biology; Computer science; Ecology","authors":[{"name":"Jeremy R deWaard","is_ca":true},{"name":"Natalya Ivanova","is_ca":true},{"name":"Mehrdad Hajibabaei","is_ca":true},{"name":"Paul D. N. Hebert","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05846406047343634,"gpt":0.422726206296243,"spread":0.3642621458228067,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002176673,0.0008805852,0.001450823,0.003993386,0.001505505,0.002243812,0.001905986,0.001595859,0.005515548],"category_scores_gemma":[0.009878092,0.001179648,0.0008622346,0.003376273,0.001078881,0.002670335,0.002520269,0.004071642,0.01335215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007739204,"about_ca_system_score_gemma":0.001746652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001954643,"about_ca_topic_score_gemma":0.002520648,"domain_scores_codex":[0.9974291,0.0002526567,0.0002240438,0.0005563711,0.001263138,0.0002748008],"domain_scores_gemma":[0.9950621,0.001022565,0.0004543054,0.000839094,0.002280063,0.0003419682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001851025,0.0001069371,0.002882758,0.001349398,0.00006057136,0.0005517824,0.001565277,0.002618394,0.699646,0.01577116,0.01136158,0.2639011],"study_design_scores_gemma":[0.00001705222,0.0002769777,0.002528153,0.0003859637,0.00006379169,0.0005681681,0.0005456695,0.006010622,0.7272531,0.005213224,0.2570172,0.0001199074],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04026732,0.002264906,0.933706,0.0005788371,0.001002463,0.00195303,0.003470837,0.006969947,0.0097866],"genre_scores_gemma":[0.04297592,0.00361638,0.9260449,0.0004393095,0.0001542923,0.0009741735,0.009958436,0.001439509,0.01439696],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.005515548,"threshold_uncertainty_score":0.01845133,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W65533086","doi":"10.1007/978-1-61779-108-6_2","title":"Cell Viability Analysis Using Trypan Blue: Manual and Automated Methods","year":2011,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Animal testing and alternatives","field":"Veterinary","cited_by":379,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network","funders":"","keywords":"Hemocytometer; Trypan blue; Reproducibility; Instrumentation (computer programming); Viability assay; Computer science; Biomedical engineering; Engineering; Chromatography; Biology; Chemistry; Cell; Biochemistry; Operating system","authors":[{"name":"Kristine S. Louis","is_ca":true},{"name":"Andre Siegel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2311818652455239,"gpt":0.5449882586341825,"spread":0.3138063933886586,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004650689,0.001632804,0.002347696,0.006038849,0.0016368,0.002629012,0.003014004,0.001436681,0.006648598],"category_scores_gemma":[0.003819027,0.0007356851,0.001010636,0.004356442,0.001656285,0.001746706,0.002395941,0.002560303,0.005835605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007520033,"about_ca_system_score_gemma":0.001556992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001459096,"about_ca_topic_score_gemma":0.00308332,"domain_scores_codex":[0.9841669,0.00259764,0.001768427,0.00215207,0.008781914,0.0005331369],"domain_scores_gemma":[0.9954536,0.0007594975,0.0006151336,0.000812369,0.002141073,0.0002182459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007264481,0.0004310672,0.002991897,0.002563584,0.0001131643,0.0004237793,0.0007927848,0.0005126579,0.8265733,0.004989726,0.01034464,0.149537],"study_design_scores_gemma":[0.0001242794,0.001246197,0.01180078,0.000389476,0.0002291,0.002469148,0.0003509222,0.00733681,0.7989864,0.003260957,0.1733996,0.0004063927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08929119,0.04014996,0.803643,0.001219577,0.002366948,0.006447674,0.006844488,0.006761984,0.04327521],"genre_scores_gemma":[0.1343247,0.02878667,0.767042,0.0006860442,0.0007820209,0.009132421,0.01387626,0.001649183,0.04372058],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006648598,"threshold_uncertainty_score":0.02459544,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W41605747","doi":"10.1007/978-1-60327-164-6_13","title":"Phage Classification and Characterization","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":339,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Prokaryote; Virus classification; Biology; Predictive value; Computational biology; Evolutionary biology; Virology; Bacteria; Genome; Genetics; Medicine","authors":[{"name":"Hans-W. Ackermann","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01881916650877489,"gpt":0.3690059815191328,"spread":0.3501868150103579,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001652414,0.0003711513,0.0005755605,0.006264477,0.0009379976,0.002009131,0.0007493322,0.0004910378,0.003229184],"category_scores_gemma":[0.003501137,0.0001768458,0.0005345104,0.003640138,0.000445205,0.0009195243,0.0006701209,0.0007942194,0.003890903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006087027,"about_ca_system_score_gemma":0.001099552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003179839,"about_ca_topic_score_gemma":0.001782087,"domain_scores_codex":[0.9983511,0.0001769316,0.0002514121,0.0002953092,0.0006123653,0.0003130025],"domain_scores_gemma":[0.9968869,0.0003823313,0.0003669789,0.0003725195,0.001639072,0.0003522013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001247019,0.0002902645,0.1769836,0.000872795,0.00005743392,0.0005780855,0.00239151,0.0009159819,0.4318793,0.004333842,0.005432836,0.3750173],"study_design_scores_gemma":[0.00003747651,0.0006540272,0.5061446,0.0005815055,0.0001190484,0.003393515,0.002081403,0.006566553,0.173194,0.003715609,0.3033794,0.0001329542],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8545829,0.00764494,0.06315807,0.0007224106,0.0003780586,0.001351076,0.02231301,0.000983669,0.04886591],"genre_scores_gemma":[0.7709013,0.004917182,0.1367305,0.0003753221,0.0001408801,0.0009553132,0.06224015,0.0004045938,0.02333471],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.006264477,"threshold_uncertainty_score":0.01080263,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4285293142","doi":"10.1007/978-1-0716-2376-3_10","title":"Enzyme-Linked Immunosorbent Assay (ELISA)","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":291,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Enzyme; Chemistry; Molecular biology; Biology; Biochemistry","authors":[{"name":"Mahdis Sadat Tabatabaei","is_ca":true},{"name":"Marya Ahmed","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01804037923571036,"gpt":0.3839660939577909,"spread":0.3659257147220805,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003033028,0.00785616,0.003616931,0.004512594,0.001099069,0.002498877,0.005361035,0.003048567,0.01583453],"category_scores_gemma":[0.002520641,0.001811196,0.002369685,0.003986781,0.0007761606,0.00142001,0.001946399,0.004761062,0.03344289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006523479,"about_ca_system_score_gemma":0.001194914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007274311,"about_ca_topic_score_gemma":0.0009402238,"domain_scores_codex":[0.9893306,0.002663232,0.0009036622,0.002366248,0.003502552,0.001233721],"domain_scores_gemma":[0.9970706,0.0008503661,0.0002210583,0.0005537986,0.001096968,0.0002072243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007800272,0.002031019,0.002072521,0.001966636,0.0003295801,0.0002670378,0.0001282792,0.0005519344,0.9237721,0.002276021,0.01514426,0.0506807],"study_design_scores_gemma":[0.0003700313,0.002178775,0.004104477,0.0003043788,0.000401111,0.001445101,0.00009316643,0.004901103,0.8881963,0.001426619,0.09642651,0.0001525131],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.06205337,0.02192263,0.7846164,0.001653987,0.005726411,0.00651431,0.01393043,0.02748853,0.07609391],"genre_scores_gemma":[0.1339445,0.02269899,0.6715673,0.003184708,0.002589772,0.009486841,0.04701803,0.001607078,0.1079028],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01583453,"threshold_uncertainty_score":0.05297184,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W122755776","doi":"10.1007/978-1-59745-060-7_18","title":"Bone Marrow-Derived Mesenchymal Stem Cells: Isolation, Expansion, Characterization, Viral Transduction, and Production of Conditioned Medium","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Mesenchymal stem cell research","field":"Medicine","cited_by":290,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Mesenchymal stem cell; Cell biology; Clinical uses of mesenchymal stem cells; Paracrine signalling; Bone marrow; Biology; Stem cell transplantation for articular cartilage repair; Cell sorting; Stem cell; Immunology; Adult stem cell; Endothelial stem cell; In vitro; Flow cytometry","authors":[{"name":"Massimiliano Gnecchi","is_ca":false},{"name":"Luis G. Melo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03470971677383803,"gpt":0.3549415168397398,"spread":0.3202318000659018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004368346,0.0009420683,0.0007283755,0.001250523,0.0004146344,0.000676692,0.0005092997,0.0005140557,0.001950947],"category_scores_gemma":[0.0002554464,0.0004521167,0.0005350526,0.001291864,0.0003014007,0.0003403808,0.0004777384,0.001088495,0.004214651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003306119,"about_ca_system_score_gemma":0.0008323808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006491826,"about_ca_topic_score_gemma":0.0010659,"domain_scores_codex":[0.9994331,0.00003747369,0.0000700879,0.00006993467,0.0003405671,0.00004883191],"domain_scores_gemma":[0.9999145,0.00001543307,0.00001690422,0.000009698367,0.00002577311,0.00001763895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000565212,0.00007776099,0.0003059053,0.0005317614,0.00001137963,0.0001471558,0.00005783078,0.0002822133,0.9632929,0.0006847247,0.0008007861,0.03375105],"study_design_scores_gemma":[0.00003478066,0.0003021509,0.002965163,0.0001369275,0.00005812345,0.0008983107,0.00004391415,0.0009422938,0.8865576,0.0005242722,0.1075016,0.00003489305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2103653,0.1180986,0.5954705,0.001187821,0.001263815,0.009340701,0.0228943,0.005273383,0.03610553],"genre_scores_gemma":[0.3181343,0.129085,0.4526588,0.001293924,0.0005652574,0.008531193,0.05150158,0.0009393491,0.03729045],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001950947,"threshold_uncertainty_score":0.006526589,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2567713795","doi":"10.1007/978-1-4939-6737-7_1","title":"Antimicrobial Peptides: An Introduction","year":2016,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":287,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Antimicrobial peptides; Antimicrobial; Antibiotics; Function (biology); Computational biology; Biology; Antibiotic resistance; Microbiology; Genetics","authors":[{"name":"Evan F. Haney","is_ca":true},{"name":"Sarah Mansour","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03368411074606457,"gpt":0.3997311406278723,"spread":0.3660470298818077,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008935678,0.002095271,0.001804927,0.003270947,0.0004397063,0.002029635,0.001039796,0.001647627,0.00704338],"category_scores_gemma":[0.001029699,0.0006409175,0.0005661462,0.002461378,0.001286056,0.004789425,0.00241942,0.004197272,0.005440075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006881321,"about_ca_system_score_gemma":0.001765943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003610998,"about_ca_topic_score_gemma":0.0006406539,"domain_scores_codex":[0.9995977,0.00005620876,0.00005892375,0.00006834636,0.0001665868,0.00005227783],"domain_scores_gemma":[0.999568,0.000174081,0.00006677475,0.00002518372,0.00009525326,0.00007080187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000134452,0.0001105611,0.00009628999,0.01374621,0.00003742514,0.0002107373,0.00007901585,0.0003595195,0.007582629,0.01007197,0.07651261,0.8910586],"study_design_scores_gemma":[0.00001387125,0.00008381101,0.0001530388,0.001837583,0.00002605919,0.0005696599,0.0000271698,0.00007364221,0.001004375,0.00339144,0.9928024,0.00001678319],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001614801,0.9893568,0.001765216,0.0007715257,0.004259123,0.00002496611,0.0000605809,0.00004106077,0.003559115],"genre_scores_gemma":[0.001166873,0.9850633,0.001734517,0.001407883,0.003854167,0.00005876821,0.0001191069,0.00001356329,0.006581888],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00704338,"threshold_uncertainty_score":0.02356249,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3123255347","doi":"10.1007/978-1-60327-164-6","title":"Bacteriophages","year":2009,"lang":"en","type":"book","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":267,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Geography","authors":[{"name":"Martha R. J. Clokie","is_ca":false},{"name":"Andrew M. Kropinski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01373914333118821,"gpt":0.358796383308268,"spread":0.3450572399770798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004752428,0.001491228,0.0009352651,0.001387638,0.001275275,0.003321367,0.0007929123,0.001196846,0.01788314],"category_scores_gemma":[0.0008753355,0.0004887244,0.0006768978,0.001359532,0.001467341,0.003176961,0.001428748,0.004009889,0.02381703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001381681,"about_ca_system_score_gemma":0.0008149431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006524244,"about_ca_topic_score_gemma":0.0008797852,"domain_scores_codex":[0.9994559,0.00008101299,0.00002777189,0.0001172861,0.0002751423,0.00004300918],"domain_scores_gemma":[0.9997076,0.00009849915,0.00002829505,0.00003415935,0.000076634,0.00005484897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001310315,0.00007995542,0.0001842341,0.001443095,0.00002921875,0.0002196664,0.0006133991,0.0003768086,0.02374053,0.1644659,0.4876218,0.3210945],"study_design_scores_gemma":[0.000002427657,0.00001013483,0.00004365962,0.00007195371,0.000001902434,0.0001002031,0.00001317288,0.0000231456,0.0008408917,0.004453126,0.9944351,0.000004367175],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"other","genre_scores_codex":[0.003201998,0.5389552,0.02117112,0.01000472,0.03915958,0.0001774688,0.001276409,0.00163846,0.384415],"genre_scores_gemma":[0.01158395,0.1748678,0.0231797,0.007527732,0.003857195,0.0002110514,0.001629796,0.0007247784,0.7764179],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.01788314,"threshold_uncertainty_score":0.059825,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2900730055","doi":"10.1007/978-1-4939-8618-7_10","title":"miRNet—Functional Analysis and Visual Exploration of miRNA–Target Interactions in a Network Context","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":265,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; McGill University","keywords":"Context (archaeology); Computer science; microRNA; Biology; Genetics; Paleontology","authors":[{"name":"Yannan Fan","is_ca":true},{"name":"Jianguo Xia","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02988728186424473,"gpt":0.3986795137081915,"spread":0.3687922318439468,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006382573,0.0009930449,0.0004888079,0.002438137,0.000466996,0.001156585,0.0006722272,0.0005453213,0.01023769],"category_scores_gemma":[0.00162156,0.0003555643,0.0008481495,0.001228848,0.0002745725,0.001250483,0.001058312,0.0006517491,0.001299396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003925444,"about_ca_system_score_gemma":0.0005623791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002026245,"about_ca_topic_score_gemma":0.004080339,"domain_scores_codex":[0.9997361,0.00007100048,0.00001745391,0.00007112166,0.00007173425,0.00003256113],"domain_scores_gemma":[0.9994195,0.0003179521,0.00006752535,0.00007033268,0.00005934642,0.000065459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003882061,0.00047867,0.03430761,0.00451078,0.001074858,0.002703213,0.002146537,0.08734843,0.4218562,0.06224464,0.09205315,0.2873938],"study_design_scores_gemma":[0.0002411903,0.0003223536,0.02753661,0.0002849572,0.0003307302,0.001672472,0.0009046849,0.7339136,0.07684907,0.06483455,0.09294422,0.0001655444],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3313823,0.002145053,0.5172896,0.001269434,0.000390566,0.0002116086,0.04225493,0.08959305,0.01546341],"genre_scores_gemma":[0.6955284,0.001000213,0.2754678,0.0001721743,0.00008353991,0.0003880922,0.01962257,0.003987898,0.003749232],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01023769,"threshold_uncertainty_score":0.03424847,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4235666967","doi":"10.1007/978-1-4939-1363-3_1","title":"Yeast Transformation by the LiAc/SS Carrier DNA/PEG Method","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Protocol (science); Transformation efficiency; DNA; Computational biology; Computer science; Microtiter plate; Biology; Molecular biology; Genetics; Gene; Medicine; Agrobacterium","authors":[{"name":"R. Daniel Gietz","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008353399979741575,"gpt":0.3997997867788791,"spread":0.3914463867991375,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004563574,0.001267583,0.001436453,0.001090211,0.0006794102,0.000777924,0.001186704,0.0005233692,0.00470106],"category_scores_gemma":[0.0003345907,0.000466879,0.0007099251,0.001098172,0.0005783723,0.000323426,0.0008440595,0.001946256,0.005728712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005078739,"about_ca_system_score_gemma":0.001049912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002525073,"about_ca_topic_score_gemma":0.002763494,"domain_scores_codex":[0.9994681,0.00007448391,0.00007239725,0.0001353746,0.0001559825,0.00009355997],"domain_scores_gemma":[0.9996948,0.00004844605,0.00005335646,0.00009597077,0.00004792454,0.00005948661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002162527,0.00009597004,0.0001874088,0.0001799236,0.00002322927,0.000140169,0.00009192123,0.0001209301,0.9859453,0.001252447,0.00118823,0.01055822],"study_design_scores_gemma":[0.00003308718,0.0000703713,0.0003993027,0.00001103194,0.0000276746,0.0001490113,0.00001798332,0.0005734948,0.9786922,0.0001543031,0.01985515,0.00001638114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4201086,0.003730084,0.5003892,0.001562297,0.001105976,0.002642338,0.01292815,0.02141785,0.03611551],"genre_scores_gemma":[0.6668646,0.006155349,0.2014437,0.0004379266,0.0001524956,0.001840295,0.02924026,0.00399248,0.08987296],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00470106,"threshold_uncertainty_score":0.01572657,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897322335","doi":"10.1007/978-1-4939-8728-3_11","title":"Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Genome; Biology; Metagenomics; Computational biology; Gene; Taxon; Microbiome; Evolutionary biology; Phylogenetics; Genetics; Ecology","authors":[{"name":"Gavin M. Douglas","is_ca":true},{"name":"Robert G. Beiko","is_ca":true},{"name":"Morgan G. I. Langille","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02192490922140545,"gpt":0.3218194195309742,"spread":0.2998945103095688,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001288884,0.001393534,0.001370774,0.003315163,0.000693816,0.001631657,0.0005500029,0.0007535003,0.001609365],"category_scores_gemma":[0.003432689,0.0004933618,0.002240287,0.003212234,0.0004838869,0.0009250786,0.001069958,0.0007995459,0.001244224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003969512,"about_ca_system_score_gemma":0.0006440633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001595282,"about_ca_topic_score_gemma":0.001777957,"domain_scores_codex":[0.9994277,0.000138394,0.00004586806,0.0002021178,0.0001136572,0.00007217882],"domain_scores_gemma":[0.9985241,0.000892071,0.0002003078,0.0001188298,0.0001280764,0.0001365857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003476666,0.0005106416,0.3863272,0.001672615,0.001738864,0.001048309,0.000512694,0.0795189,0.3496055,0.003408733,0.003928726,0.1682512],"study_design_scores_gemma":[0.0001483198,0.0009118604,0.2327832,0.0001699898,0.001006167,0.001219365,0.0006167924,0.6868525,0.05528834,0.01205768,0.008769695,0.0001761479],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9046999,0.001405943,0.07635055,0.0001799256,0.00006295586,0.00006560172,0.01374629,0.001899195,0.001589632],"genre_scores_gemma":[0.8868986,0.0005021175,0.09014082,0.00008125832,0.00004198887,0.0001251069,0.0214075,0.0003333228,0.0004693152],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003315163,"threshold_uncertainty_score":0.006816387,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2770467375","doi":"10.1007/978-1-4939-7343-9_3","title":"Practical Advice on the One-Step Growth Curve","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":245,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Advice (programming); Computer science; Two step; Mathematics; Applied mathematics; Programming language","authors":[{"name":"Andrew M. Kropinski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03362087441852599,"gpt":0.3938948119587871,"spread":0.360273937540261,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007134965,0.003806553,0.003292948,0.00580333,0.001556864,0.001959029,0.004848913,0.004702548,0.06060659],"category_scores_gemma":[0.03503586,0.001909163,0.001937636,0.003491742,0.00189271,0.00337561,0.002418039,0.008715685,0.09567936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001037113,"about_ca_system_score_gemma":0.001858712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003057471,"about_ca_topic_score_gemma":0.005206892,"domain_scores_codex":[0.9923581,0.002447759,0.0008004243,0.0006539882,0.003452459,0.0002873082],"domain_scores_gemma":[0.9704634,0.01247472,0.0008819465,0.003721832,0.01146819,0.0009899621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001098102,0.0007184194,0.001632995,0.002286268,0.00007197488,0.001632652,0.0007035132,0.001827115,0.06702421,0.008515612,0.4640432,0.4504458],"study_design_scores_gemma":[0.0002847464,0.0009020978,0.004022761,0.001019059,0.0001208834,0.004972362,0.0006289996,0.004648678,0.06291022,0.02056858,0.8994491,0.0004724661],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.005767017,0.01408777,0.8458648,0.02198055,0.01796045,0.001599438,0.004289374,0.03978709,0.0486635],"genre_scores_gemma":[0.01821021,0.009986402,0.8601149,0.00968928,0.002793044,0.002182944,0.00346438,0.007568602,0.0859902],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.06060659,"threshold_uncertainty_score":0.2027493,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2416577414","doi":"10.1007/978-1-61779-591-6_10","title":"Methods for DNA Barcoding Photosynthetic Protists Emphasizing the Macroalgae and Diatoms","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"Ontario Genomics Institute; Genome Canada","keywords":"DNA barcoding; Biology; Barcode; Cytochrome c oxidase subunit I; Plastid; Mitochondrial DNA; Molecular marker; Red algae; Botany; Algae; Gene; Evolutionary biology; Genetics; Chloroplast","authors":[{"name":"Gary W. Saunders","is_ca":true},{"name":"Daniel C. McDevit","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02736795161060792,"gpt":0.4047124138774846,"spread":0.3773444622668767,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003100543,0.002033978,0.001386993,0.006618847,0.001636453,0.002266165,0.002353262,0.001919865,0.008727112],"category_scores_gemma":[0.003707124,0.001375231,0.001444374,0.004056391,0.001667115,0.00252249,0.00228902,0.003592407,0.01732356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007687986,"about_ca_system_score_gemma":0.001796884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001433647,"about_ca_topic_score_gemma":0.003992551,"domain_scores_codex":[0.9959914,0.0004530196,0.0003392568,0.001214147,0.001849024,0.0001532277],"domain_scores_gemma":[0.9979374,0.0005894915,0.0003616005,0.0003943476,0.0006136337,0.0001035239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009013651,0.0001358764,0.004440643,0.003488417,0.0001715023,0.0003662355,0.001054637,0.001138447,0.4011167,0.01589057,0.0191887,0.552918],"study_design_scores_gemma":[0.00003984726,0.0002934209,0.009023062,0.002324597,0.0002345595,0.003602414,0.0005331037,0.004452519,0.2349983,0.01973145,0.7244698,0.0002968987],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.004663396,0.01885061,0.9546884,0.0008603148,0.001248265,0.0008568385,0.005382799,0.002968638,0.01048082],"genre_scores_gemma":[0.00764631,0.01629911,0.9543985,0.0009839103,0.0003271496,0.001616815,0.008316565,0.0005371927,0.009874514],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.008727112,"threshold_uncertainty_score":0.02919507,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W196395934","doi":"10.1007/978-1-62703-128-8_14","title":"Generation and Characterization of Murine Alternatively Activated Macrophages","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Arginase; Chemokine; Cell biology; Innate immune system; Macrophage; Inflammation; Cytokine; Immune system; Biology; Nitric oxide; Phenotype; Immunology; Chemistry; Arginine; In vitro; Biochemistry; Endocrinology","authors":[{"name":"Shelley B. Weisser","is_ca":true},{"name":"Keith W. McLarren","is_ca":true},{"name":"Etsushi Kuroda","is_ca":true},{"name":"Laura M. Sly","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03107506347354663,"gpt":0.3709163522686537,"spread":0.339841288795107,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001061839,0.000896956,0.0006731363,0.001527449,0.0006096003,0.0007276786,0.00106679,0.001115998,0.004042725],"category_scores_gemma":[0.0007401558,0.0007681351,0.000918646,0.0007904288,0.0004432035,0.0004285897,0.000717368,0.002765799,0.005333857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004673109,"about_ca_system_score_gemma":0.0004289525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005901015,"about_ca_topic_score_gemma":0.0007743664,"domain_scores_codex":[0.9987904,0.000192243,0.0001799522,0.0002058603,0.0003005043,0.0003310084],"domain_scores_gemma":[0.9990439,0.0001260459,0.0001159464,0.0001616129,0.0002404179,0.0003119552],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004270108,0.0003570988,0.0002984745,0.0001484615,0.00001844715,0.0003026958,0.00017245,0.0004231487,0.9907354,0.001428207,0.0005003904,0.005188191],"study_design_scores_gemma":[0.0007475068,0.005414576,0.006815035,0.0001954084,0.0001413094,0.002228757,0.0002896786,0.004348879,0.8747492,0.001270473,0.1037195,0.00007964772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7944568,0.0127962,0.1335699,0.001931898,0.00135198,0.009587886,0.02228998,0.0007550661,0.02326025],"genre_scores_gemma":[0.769811,0.01007135,0.1386211,0.001401938,0.0005050742,0.009220106,0.03691791,0.000587613,0.03286389],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004042725,"threshold_uncertainty_score":0.01352423,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2346708074","doi":"10.1007/978-1-60327-164-6_9","title":"Enumeration of Bacteriophages Using the Small Drop Plaque Assay System","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Enumeration; Virus quantification; Drop (telecommunication); Biology; Computational biology; Computer science; Genetics; Mathematics; Combinatorics; Cell culture","authors":[{"name":"Amanda Mazzocco","is_ca":true},{"name":"Erika J. Lingohr","is_ca":true},{"name":"Roger P. Johnson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0216954695374461,"gpt":0.3560334562563664,"spread":0.3343379867189203,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001300742,0.001649332,0.001371807,0.002107302,0.0007384708,0.001159048,0.001434407,0.0009249419,0.002091606],"category_scores_gemma":[0.001151904,0.0005351002,0.0007223072,0.001213375,0.000589368,0.0007904359,0.001209894,0.002108427,0.00342977],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002945721,"about_ca_system_score_gemma":0.0004661382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005854389,"about_ca_topic_score_gemma":0.0009767625,"domain_scores_codex":[0.9976075,0.0004899608,0.0001918895,0.0003104203,0.001266535,0.0001336913],"domain_scores_gemma":[0.998822,0.0004943665,0.00009545206,0.0001838888,0.0003053624,0.00009873095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003936786,0.00006353235,0.0002148114,0.0001085208,0.000009449692,0.00002088932,0.00003763794,0.00008815801,0.9955983,0.0001851448,0.0002123374,0.003421713],"study_design_scores_gemma":[0.000007546767,0.0002852175,0.0008880617,0.00001453402,0.00001463574,0.0001417615,0.00002549068,0.00219618,0.9935128,0.0001751064,0.002717346,0.00002125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2430949,0.004892037,0.730364,0.0003698208,0.0006030349,0.002343542,0.002403755,0.002889956,0.01303888],"genre_scores_gemma":[0.2842955,0.009880863,0.6697316,0.0002781925,0.0002739117,0.002148475,0.005963514,0.0004986821,0.02692931],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002107302,"threshold_uncertainty_score":0.006997168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2965200254","doi":"10.1007/978-1-4939-9658-2_2","title":"Morphology of Microglia Across Contexts of Health and Disease","year":2019,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":233,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Microglia; Biology; Phenotype; Ultrastructure; Neuroscience; Disease; Pathology; Morphology (biology); Electron microscope; Medicine; Inflammation; Immunology; Zoology; Gene","authors":[{"name":"Julie C. Savage","is_ca":true},{"name":"Micaël Carrier","is_ca":true},{"name":"Marie‐Ève Tremblay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1272426843659102,"gpt":0.4932011583418322,"spread":0.365958473975922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001009425,0.001426949,0.001639144,0.003372379,0.0003111217,0.001886466,0.001496007,0.001773677,0.001996184],"category_scores_gemma":[0.000903458,0.000531145,0.0004334519,0.002782329,0.001747522,0.002057073,0.001225602,0.002379776,0.001953092],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001395793,"about_ca_system_score_gemma":0.001224329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001518648,"about_ca_topic_score_gemma":0.002580744,"domain_scores_codex":[0.9996377,0.00004982717,0.00004662199,0.00007980773,0.000148684,0.00003736826],"domain_scores_gemma":[0.9995297,0.0002161652,0.00006726477,0.00002672435,0.0001216575,0.00003848223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006448264,0.00004296613,0.0002234719,0.009405005,0.00003876557,0.0001837257,0.00008247715,0.000484944,0.005718117,0.008893709,0.02306663,0.9517956],"study_design_scores_gemma":[0.00001422767,0.00007498685,0.002064868,0.0032755,0.00007635274,0.001980984,0.0001177321,0.0002088324,0.002662404,0.01339065,0.9760824,0.0000510461],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009686351,0.9981105,0.0004378481,0.0002668683,0.0002067074,0.000003794389,0.00002185878,0.000007911014,0.0008476946],"genre_scores_gemma":[0.0005875633,0.9977562,0.0004814048,0.0001575481,0.0002872311,0.00000797712,0.00003481656,0.000002810945,0.00068447],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003372379,"threshold_uncertainty_score":0.01012725,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2615742986","doi":"10.1007/978-1-4939-6952-4_20","title":"AutoDock and AutoDockTools for Protein-Ligand Docking: Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1(BACE1) as a Case Study","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Montreal Clinical Research Institute","funders":"","keywords":"AutoDock; Docking (animal); Protein–ligand docking; Computer science; Virtual screening; Computational biology; Drug discovery; Structural bioinformatics; Chemistry; Protein structure; Biochemistry; Biology; Medicine","authors":[{"name":"Nehmé El-Hachem","is_ca":true},{"name":"Benjamin Haibe‐Kains","is_ca":true},{"name":"Athar Khalil","is_ca":false},{"name":"Firas Kobeissy","is_ca":false},{"name":"Georges Nemer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05225687193293021,"gpt":0.4312786929087611,"spread":0.3790218209758309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001960176,0.0008299667,0.0009585156,0.0006943916,0.0006004677,0.001118505,0.001438129,0.001031066,0.003033454],"category_scores_gemma":[0.003570419,0.0003169499,0.0005588298,0.001083452,0.0003704779,0.0008294698,0.000940368,0.001075115,0.0008253102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005713293,"about_ca_system_score_gemma":0.001025426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004673847,"about_ca_topic_score_gemma":0.005230193,"domain_scores_codex":[0.9994716,0.0002471584,0.00003500887,0.00005341445,0.0001387937,0.00005397402],"domain_scores_gemma":[0.9990677,0.0005858176,0.00004515656,0.0001419111,0.000102803,0.00005669587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002853529,0.0006679603,0.006033661,0.001761582,0.000664741,0.002518937,0.000504548,0.4227248,0.0271613,0.03627443,0.06379206,0.4350425],"study_design_scores_gemma":[0.0002759476,0.0001374843,0.001088466,0.00003854709,0.00006961654,0.0006164641,0.00007662467,0.9438328,0.0212871,0.01354385,0.01896369,0.00006945739],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3302017,0.00510349,0.6119308,0.002926908,0.0003083618,0.0001997181,0.003394234,0.03388382,0.012051],"genre_scores_gemma":[0.6451692,0.001692787,0.3417501,0.0002087081,0.00003152142,0.0001814393,0.002703328,0.002935252,0.005327731],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004673847,"threshold_uncertainty_score":0.0103665,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2466240566","doi":"10.1007/978-1-60327-164-6_12","title":"Basic Phage Electron Microscopy","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":211,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Uranyl acetate; Magnification; Electron microscope; Staining; Negative stain; Uranyl; Chemistry; Materials science; Optics; Biology; Physics; Organic chemistry","authors":[{"name":"Hans-W. Ackermann","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01004961981405422,"gpt":0.3908998379691471,"spread":0.3808502181550928,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009424781,0.001004735,0.0007116405,0.001399184,0.0009348352,0.000881261,0.001438912,0.0008864395,0.02830207],"category_scores_gemma":[0.0007889862,0.0005856212,0.0005168297,0.0009269658,0.0005441469,0.001019193,0.0009273599,0.001777117,0.0185989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003598926,"about_ca_system_score_gemma":0.000404113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000493326,"about_ca_topic_score_gemma":0.0008581296,"domain_scores_codex":[0.9994755,0.00007780864,0.00004272199,0.0001359671,0.0001924038,0.00007556244],"domain_scores_gemma":[0.9994192,0.0001219475,0.00003307592,0.0001955816,0.0001689597,0.00006121246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001535709,0.0001008133,0.00089662,0.001394107,0.0000350124,0.0004261944,0.0003150996,0.000552345,0.886794,0.01285909,0.01639795,0.08007528],"study_design_scores_gemma":[0.00005923206,0.0003805954,0.008443906,0.0004633454,0.00006061833,0.005502064,0.000166021,0.003673954,0.3959114,0.01269122,0.5725453,0.0001024122],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.06793685,0.01692346,0.769893,0.001284073,0.001080925,0.002574907,0.01170004,0.01281974,0.115787],"genre_scores_gemma":[0.1058945,0.01664664,0.7664548,0.0008130536,0.0003090152,0.0027765,0.01215388,0.002406724,0.09254493],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02830207,"threshold_uncertainty_score":0.09467989,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2999240762","doi":"10.1007/978-1-0716-0239-3_17","title":"Using MetaboAnalyst 4.0 for Metabolomics Data Analysis, Interpretation, and Integration with Other Omics Data","year":2020,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"National Cancer Institute","keywords":"Metabolomics; Omics; Interpretation (philosophy); Computational biology; Computer science; Data mining; Biology; Bioinformatics","authors":[{"name":"Jasmine Chong","is_ca":true},{"name":"Jianguo Xia","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.138662375836852,"gpt":0.4836544271111078,"spread":0.3449920512742558,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002664542,0.002294151,0.002609999,0.00504512,0.0002597884,0.001970514,0.002236777,0.001315922,0.00714054],"category_scores_gemma":[0.002503106,0.000720881,0.001428022,0.004857129,0.0006473878,0.001531251,0.001524948,0.003718563,0.01039227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008833614,"about_ca_system_score_gemma":0.002257106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001995795,"about_ca_topic_score_gemma":0.00302636,"domain_scores_codex":[0.9990963,0.0001780674,0.0001128954,0.0001150383,0.0004494985,0.00004820571],"domain_scores_gemma":[0.9981042,0.0007924223,0.0002180567,0.0001175614,0.0006641236,0.0001035313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008583211,0.00003862648,0.0001657268,0.01864638,0.0003620445,0.0001682952,0.00004771467,0.0005957898,0.005326656,0.008053848,0.08487362,0.8816355],"study_design_scores_gemma":[0.00001907306,0.00003231598,0.0003986031,0.001663644,0.0001581936,0.0003858551,0.00001634807,0.0002456296,0.002826762,0.002741364,0.9914687,0.00004368338],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"methods","genre_scores_codex":[0.000256128,0.968563,0.01966893,0.00170076,0.001259797,0.0001011634,0.001882891,0.001517061,0.005050322],"genre_scores_gemma":[0.001039703,0.9657443,0.02392557,0.0009636956,0.0006022664,0.000145459,0.004002301,0.0003449652,0.003231873],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.00714054,"threshold_uncertainty_score":0.02388752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2417500499","doi":"10.1007/978-1-61779-337-0_7","title":"Kinase Inhibitor Selectivity Profiling Using Differential Scanning Fluorimetry","year":2011,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":178,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Enzyme; Chemistry; Virtual screening; Drug discovery; Kinase; Combinatorial chemistry; Computational biology; Target protein; Ligand binding assay; Selectivity; Substrate (aquarium); Fluorescence spectroscopy; Biochemistry; Fluorescence; Biophysics; Biology; Receptor","authors":[{"name":"O. Fedorov","is_ca":false},{"name":"F. Niesen","is_ca":false},{"name":"Stefan Knapp","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04390471654794068,"gpt":0.368986993629731,"spread":0.3250822770817903,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008938906,0.0007203007,0.0007075159,0.001006617,0.0003236447,0.0005341364,0.0006082577,0.0004645528,0.001124483],"category_scores_gemma":[0.0007504699,0.0003515872,0.0004981526,0.0008462394,0.0003693344,0.0003759235,0.0003687413,0.00104358,0.0005233375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001101009,"about_ca_system_score_gemma":0.0003353249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008089974,"about_ca_topic_score_gemma":0.001299673,"domain_scores_codex":[0.9991085,0.0001233853,0.00004775982,0.0002004789,0.0004101261,0.0001098305],"domain_scores_gemma":[0.9995362,0.000185178,0.00008039766,0.00004915599,0.0001297015,0.00001929369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007824033,0.00002861447,0.0002888267,0.00008744193,0.00001265988,0.00002078115,0.00003079396,0.0008207085,0.9863115,0.0003018345,0.0003765098,0.01164203],"study_design_scores_gemma":[0.000003983265,0.00005941472,0.0003984499,0.000002569161,0.000008197359,0.00002816213,0.000005167229,0.002858463,0.9954119,0.00005046387,0.001164797,0.000008387879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7288373,0.006772218,0.2487395,0.0004932313,0.000192394,0.0003065435,0.002441606,0.002477414,0.009739882],"genre_scores_gemma":[0.8595081,0.007711416,0.123022,0.0002132429,0.0000475484,0.0004651346,0.001708613,0.0001511281,0.007172919],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001124483,"threshold_uncertainty_score":0.007988393,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2584760282","doi":"10.1007/978-1-4939-6783-4_11","title":"Functional Interaction Network Construction and Analysis for Disease Discovery","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Computer science; Biological network; Visualization; Classifier (UML); Bayesian network; Interaction network; Machine learning; Data mining; Artificial intelligence; Naive Bayes classifier; Network analysis; Computational biology; Support vector machine; Engineering; Gene; Biology","authors":[{"name":"Guanming Wu","is_ca":true},{"name":"Robin Haw","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01992820384485012,"gpt":0.3562708740009987,"spread":0.3363426701561485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003154276,0.001410627,0.0009314412,0.005331386,0.001187354,0.001550781,0.001496984,0.000646776,0.00744875],"category_scores_gemma":[0.01103097,0.0006119643,0.002416067,0.003313678,0.000599745,0.001252974,0.001538914,0.001636543,0.002170206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009283982,"about_ca_system_score_gemma":0.002244955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002146215,"about_ca_topic_score_gemma":0.003451091,"domain_scores_codex":[0.998013,0.0008178216,0.0001578945,0.0004497204,0.0004138479,0.0001476534],"domain_scores_gemma":[0.9953163,0.002840584,0.0002882878,0.0009153236,0.0004650906,0.0001743825],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001785484,0.0009469259,0.03834366,0.002721514,0.002588002,0.001405681,0.0008403327,0.1107686,0.138594,0.1330453,0.0395267,0.5294338],"study_design_scores_gemma":[0.0001483339,0.0003153517,0.01744938,0.0001838231,0.001012072,0.001247223,0.0002494999,0.664032,0.05428287,0.2056158,0.05535436,0.0001092046],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02186183,0.0002889131,0.9586807,0.000386482,0.0000642204,0.000344281,0.01099784,0.005489545,0.001886145],"genre_scores_gemma":[0.195762,0.0005518213,0.7725649,0.0001346842,0.00006295041,0.001268741,0.02683695,0.0007811369,0.002036768],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00744875,"threshold_uncertainty_score":0.02491862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W128683111","doi":"10.1007/978-1-61779-204-5_3","title":"The Proprotein Convertases, 20 Years Later","year":2011,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Proprotein Convertases; Computational biology; Biology; Endocrinology","authors":[{"name":"Nabil G. Seidah","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03009515244197118,"gpt":0.3979223719370876,"spread":0.3678272194951164,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003629606,0.001748195,0.001433314,0.002916148,0.001770009,0.007666553,0.001119069,0.00431786,0.01438095],"category_scores_gemma":[0.006373464,0.0005833079,0.001303078,0.002857621,0.006327411,0.006528815,0.003332441,0.0105176,0.01243254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004922707,"about_ca_system_score_gemma":0.00453952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005554403,"about_ca_topic_score_gemma":0.00343569,"domain_scores_codex":[0.9968818,0.0004332853,0.0003359618,0.001155336,0.0007986116,0.0003949984],"domain_scores_gemma":[0.9967163,0.0006930191,0.0003524178,0.0003905043,0.00141785,0.0004298881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008971323,0.0002910828,0.004947205,0.002839271,0.000183378,0.001786465,0.001866402,0.0007654128,0.007160108,0.2791808,0.1764267,0.5236562],"study_design_scores_gemma":[0.00001807374,0.00009055383,0.0008848944,0.0004454158,0.00002346868,0.001229989,0.0001652558,0.00007563956,0.001002251,0.01173799,0.9842913,0.00003525048],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009599848,0.7369208,0.0193824,0.05058038,0.04624886,0.0003461005,0.001944792,0.0005507158,0.1344261],"genre_scores_gemma":[0.09150956,0.5275044,0.02426199,0.06048927,0.02995057,0.0005762349,0.003807059,0.0005070355,0.261394],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01438095,"threshold_uncertainty_score":0.04810911,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W90217597","doi":"10.1007/978-1-62703-017-5_8","title":"Force Fields for Classical Molecular Dynamics","year":2012,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Force field (fiction); Pairwise comparison; Molecular dynamics; Field (mathematics); Molecular mechanics; Statistical physics; Classical mechanics; Computer science; Physics; Mathematics; Artificial intelligence; Quantum mechanics","authors":[{"name":"Luca Monticelli","is_ca":false},{"name":"D. Peter Tieleman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03227412135959856,"gpt":0.4276037533609041,"spread":0.3953296320013055,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001418673,0.001630716,0.001656574,0.002687786,0.0009766849,0.001148198,0.002748074,0.002477338,0.01299293],"category_scores_gemma":[0.002244061,0.0006707017,0.001005359,0.002606499,0.001763526,0.002265706,0.002009213,0.003779969,0.01078324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001466717,"about_ca_system_score_gemma":0.001550606,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001640335,"about_ca_topic_score_gemma":0.001027138,"domain_scores_codex":[0.9991872,0.0001843741,0.00005539573,0.0001086915,0.0004152672,0.00004909489],"domain_scores_gemma":[0.9994851,0.0002378391,0.00003874985,0.00006949929,0.0001416098,0.00002712945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005199984,0.00007915375,0.0001734171,0.004325885,0.00009083474,0.0001462163,0.000122541,0.01050953,0.004300707,0.4267311,0.05092935,0.5025393],"study_design_scores_gemma":[0.00003389122,0.00004013372,0.0001407056,0.001212334,0.00002572657,0.0003952384,0.00001905672,0.007839836,0.002378207,0.09600062,0.8918461,0.00006820656],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001918981,0.5021436,0.4127415,0.003999552,0.003611758,0.0003983378,0.001494662,0.001968564,0.07172317],"genre_scores_gemma":[0.02813077,0.5062894,0.412034,0.003779348,0.002801662,0.00208256,0.003036223,0.001151452,0.04069458],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01299293,"threshold_uncertainty_score":0.04346561,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4253005829","doi":"10.1007/978-1-4939-9597-4_1","title":"Introduction to the Immune System","year":2019,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada","funders":"","keywords":"Multicellular organism; Immune system; Organism; Biology; Acquired immune system; Innate immune system; Immunity; Mechanism (biology); Autoimmunity; Immunology; Cell; Genetics; Philosophy","authors":[{"name":"Scott McComb","is_ca":true},{"name":"Aude Thiriot","is_ca":false},{"name":"Bassel Akache","is_ca":true},{"name":"Lakshmi Krishnan","is_ca":true},{"name":"Felicity C. Stark","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02499319325832197,"gpt":0.4248316836432698,"spread":0.3998384903849478,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001215228,0.001311407,0.0007739526,0.001673544,0.0009178043,0.002638982,0.00137468,0.002035437,0.02857005],"category_scores_gemma":[0.001327853,0.0005072895,0.0009619013,0.000727386,0.003282395,0.002495026,0.002152023,0.006021169,0.01620511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001190463,"about_ca_system_score_gemma":0.001176536,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006253964,"about_ca_topic_score_gemma":0.0007212005,"domain_scores_codex":[0.9993217,0.0002201771,0.00003944303,0.0001710031,0.0001749482,0.00007268582],"domain_scores_gemma":[0.9991419,0.0004194974,0.00004037698,0.0001099595,0.0001622019,0.0001259514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008435452,0.0001049039,0.0003586905,0.001205022,0.00002969663,0.0002087062,0.0004062923,0.0004320408,0.00432824,0.4790516,0.2942367,0.2195536],"study_design_scores_gemma":[0.000005138244,0.00002593966,0.0001310057,0.0001687149,0.000004223091,0.000152272,0.00002615745,0.00007715424,0.0003204385,0.04910916,0.9499716,0.000008227587],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002524091,0.5094022,0.1386156,0.05963883,0.06595786,0.0002341567,0.001448187,0.001072221,0.2211069],"genre_scores_gemma":[0.04378364,0.321619,0.09176821,0.06244274,0.07252461,0.0008724591,0.001455183,0.0007071577,0.404827],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02857005,"threshold_uncertainty_score":0.09557635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W178437326","doi":"10.1007/978-1-59745-257-1_11","title":"Specialized Techniques for Site-Directed Mutagenesis in Cyanobacteria","year":2007,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":163,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Saint Paul University","funders":"National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences","keywords":"Insertional mutagenesis; Mutagenesis; Biology; Genetics; Gene; Transformation (genetics); Chromosome; Homologous recombination; Cyanobacteria; Genome; Mutation; Bacteria","authors":[{"name":"Eugenia M. Clérico","is_ca":false},{"name":"Jayna L. Ditty","is_ca":true},{"name":"Susan S. Golden","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01603430489753038,"gpt":0.3813462581284322,"spread":0.3653119532309018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00116469,0.001074054,0.000890111,0.0008674081,0.0006248277,0.0004054762,0.001093364,0.0007725378,0.002497759],"category_scores_gemma":[0.0008165712,0.0007251747,0.000848398,0.0007699493,0.0003875066,0.000400282,0.000828426,0.002309665,0.002130162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004424972,"about_ca_system_score_gemma":0.0006892689,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007499902,"about_ca_topic_score_gemma":0.001733277,"domain_scores_codex":[0.9990337,0.0002255696,0.0001276831,0.0001902332,0.000321243,0.0001016592],"domain_scores_gemma":[0.9994691,0.0001481948,0.00007649707,0.0002103584,0.00004948277,0.00004637123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003966059,0.00003159748,0.00005812247,0.0002349464,0.00001346161,0.00008806212,0.00005621981,0.0001686521,0.9888543,0.0008706029,0.0004600985,0.009124432],"study_design_scores_gemma":[0.0000611861,0.0001895178,0.001247938,0.00006188219,0.00006169692,0.001162534,0.00002971177,0.001471965,0.9575568,0.0007833253,0.03733735,0.00003621586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08763661,0.004435578,0.8938735,0.0004632251,0.0005095678,0.002569592,0.002085085,0.003373993,0.005052755],"genre_scores_gemma":[0.1468869,0.01163229,0.8173699,0.0005591632,0.0001186832,0.005698044,0.006271108,0.001274896,0.01018899],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002497759,"threshold_uncertainty_score":0.008355856,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W130819592","doi":"10.1007/978-1-61779-591-6_3","title":"DNA Barcodes for Insects","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; DNA barcoding; Biology; Mitochondrial DNA; Identification (biology); Cytochrome c oxidase subunit I; Computational biology; Evolutionary biology; Gene; Computer science; Genetics; Ecology","authors":[{"name":"John‐James Wilson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03250248370586483,"gpt":0.3754804760468378,"spread":0.3429779923409729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007701262,0.001247673,0.001038602,0.002482692,0.00109721,0.001948993,0.001964733,0.001442055,0.05759746],"category_scores_gemma":[0.00315644,0.0005857752,0.0005478773,0.003131556,0.0008037539,0.002100776,0.001548967,0.003083623,0.07628559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008082761,"about_ca_system_score_gemma":0.000854208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009296958,"about_ca_topic_score_gemma":0.001269134,"domain_scores_codex":[0.9987553,0.000190465,0.00009071577,0.0002912194,0.0005865578,0.00008568916],"domain_scores_gemma":[0.9989612,0.0002615248,0.0001617295,0.0002280953,0.0003040084,0.00008347746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000185792,0.00007010085,0.0005473997,0.002735869,0.00004614122,0.0002897156,0.0003734279,0.000837861,0.07938742,0.04661205,0.3374012,0.531513],"study_design_scores_gemma":[0.000009123824,0.00002658013,0.0002870269,0.0002374658,0.000008472858,0.0002510062,0.0000253105,0.0002436298,0.00989453,0.004715944,0.9842811,0.00001980028],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.007069614,0.1020392,0.5818908,0.004225074,0.01185826,0.001381444,0.06102358,0.03619526,0.1943168],"genre_scores_gemma":[0.02427948,0.05344701,0.6189716,0.004523218,0.001893922,0.00196969,0.06566478,0.007584709,0.2216656],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.05759746,"threshold_uncertainty_score":0.1926827,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W177663743","doi":"10.1007/978-1-61779-591-6_11","title":"DNA Barcoding Methods for Land Plants","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"DNA barcoding; Biology; Barcode; Clade; Evolutionary biology; DNA extraction; Environmental DNA; Internal transcribed spacer; DNA sequencing; Computational biology; DNA; Polymerase chain reaction; Ecology; Genetics; Gene; Phylogenetics; Biodiversity; Computer science; Phylogenetic tree","authors":[{"name":"Aron J. Fazekas","is_ca":true},{"name":"Maria Kuzmina","is_ca":true},{"name":"Steven G. Newmaster","is_ca":true},{"name":"Peter M. Hollingsworth","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04289385290436788,"gpt":0.418568937045219,"spread":0.3756750841408511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002720956,0.001299166,0.001083213,0.004694715,0.001924471,0.001661445,0.002714845,0.001526411,0.02165575],"category_scores_gemma":[0.008405316,0.001089792,0.001420162,0.003623816,0.001030989,0.00189791,0.001840333,0.003926458,0.02962367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008602946,"about_ca_system_score_gemma":0.001794526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001148358,"about_ca_topic_score_gemma":0.002446977,"domain_scores_codex":[0.9967592,0.0007437684,0.0003578214,0.0008309784,0.001136783,0.0001714772],"domain_scores_gemma":[0.9961755,0.001036776,0.0005346295,0.001017879,0.001104469,0.0001306875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002190233,0.0001503857,0.001176908,0.003594692,0.0001303949,0.0005951722,0.0008993349,0.001344048,0.4004581,0.02528313,0.04235655,0.5237924],"study_design_scores_gemma":[0.00005741481,0.000238456,0.003051348,0.001064418,0.0001133767,0.001557245,0.00024453,0.007762418,0.3356815,0.02373948,0.6263256,0.0001641629],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.003169941,0.002852879,0.9739112,0.0004739802,0.0007654999,0.0007080814,0.005917737,0.003695654,0.008505072],"genre_scores_gemma":[0.008092212,0.002587612,0.9684484,0.0003742906,0.0001465658,0.001594101,0.006978545,0.0008795636,0.01089879],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02165575,"threshold_uncertainty_score":0.07244569,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2407344160","doi":"10.1007/978-1-60327-164-6_15","title":"Measurement of the Rate of Attachment of Bacteriophage to Cells","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Public Health Agency of Canada","funders":"","keywords":"Bacteriophage; Materials science; Environmental science; Chemistry; Biochemistry","authors":[{"name":"Andrew M. Kropinski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01916098790587909,"gpt":0.3538266140090989,"spread":0.3346656261032198,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001039248,0.0006792299,0.0007053031,0.0008529421,0.0003729295,0.0007361942,0.001007243,0.001115712,0.001368886],"category_scores_gemma":[0.002048603,0.0003981442,0.0003338489,0.0007214487,0.0004493549,0.0007485578,0.0004518018,0.002011983,0.001237732],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004754608,"about_ca_system_score_gemma":0.0002622448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001013111,"about_ca_topic_score_gemma":0.0005955881,"domain_scores_codex":[0.9986726,0.0002052131,0.00006101212,0.0003101017,0.000614315,0.0001368566],"domain_scores_gemma":[0.9979514,0.0009403686,0.000217977,0.0002936148,0.0004383597,0.0001583205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006689173,0.00003011279,0.0006366834,0.00008285952,0.00001416034,0.00001344577,0.00003956372,0.00005317766,0.9945723,0.000172415,0.0001081108,0.004210235],"study_design_scores_gemma":[0.000006795599,0.0002899572,0.006879468,0.00001466699,0.00001704137,0.0001663262,0.00004296601,0.002311791,0.9877451,0.000136072,0.002366926,0.00002274913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.775848,0.01163821,0.1955788,0.0003330074,0.0004001436,0.0006122761,0.00243954,0.001431612,0.01171843],"genre_scores_gemma":[0.8592789,0.008165522,0.1088973,0.0001946728,0.00009956882,0.0008956913,0.002444634,0.0002698018,0.01975391],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001368886,"threshold_uncertainty_score":0.005496144,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W196210671","doi":"10.1007/978-1-60761-863-8_15","title":"The Guideline of the Design and Validation of MiRNA Mimics","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Canadian Institutes of Health Research","keywords":"microRNA; Gene silencing; Biology; Gene; Computational biology; Gene expression; RNA; RNA silencing; Messenger RNA; RNA interference; Endogeny; Untranslated region; Genetics; Biochemistry","authors":[{"name":"Zhiguo Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02093197367913341,"gpt":0.3739376272057808,"spread":0.3530056535266474,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004707028,0.001881657,0.001506697,0.001814039,0.00129046,0.001702908,0.002322371,0.002179097,0.004861706],"category_scores_gemma":[0.003280612,0.001467661,0.001411192,0.001331629,0.001137406,0.0009947404,0.0009841828,0.002128955,0.01189794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00103994,"about_ca_system_score_gemma":0.003668729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00167087,"about_ca_topic_score_gemma":0.002411123,"domain_scores_codex":[0.9955639,0.00104073,0.0006227378,0.0005441633,0.001982147,0.0002463936],"domain_scores_gemma":[0.9972108,0.0002920226,0.0002406081,0.000807319,0.001348424,0.0001008065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001574655,0.0001837745,0.0005193038,0.002042519,0.000058728,0.0004741467,0.0002075552,0.001374493,0.8730776,0.01064563,0.01315195,0.09810689],"study_design_scores_gemma":[0.00004070918,0.0003842211,0.0007734583,0.0002259412,0.00008674692,0.001028774,0.00006830828,0.001281326,0.6560761,0.001603651,0.3383739,0.00005685894],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02439074,0.01626612,0.8746908,0.00245537,0.002353825,0.008742654,0.006447554,0.002634033,0.06201884],"genre_scores_gemma":[0.05135355,0.01881182,0.8710905,0.001458497,0.0002380739,0.007304761,0.01346502,0.0006369214,0.03564086],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004861706,"threshold_uncertainty_score":0.0248934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2760997929","doi":"10.1007/978-1-4939-7401-6_8","title":"In Vitro Tumorigenic Assay: Colony Forming Assay for Cancer Stem Cells","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":151,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"China Scholarship Council; Cancerfonden","keywords":"Clonogenic assay; In vitro; Cancer stem cell; Stem cell; Biology; Cancer cell; Agarose; Cancer; Population; Molecular biology; Cancer research; Cell biology; Medicine; Biochemistry; Genetics","authors":[{"name":"Vijayalakshmi Rajendran","is_ca":true},{"name":"Mayur Vilas Jain","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05024480712806854,"gpt":0.4413849971207511,"spread":0.3911401899926826,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001730231,0.00268763,0.001325625,0.003329628,0.000925537,0.0006687909,0.001442399,0.001228757,0.006069971],"category_scores_gemma":[0.0008249257,0.0008447596,0.001426477,0.002033849,0.0006645863,0.0007262176,0.0009056674,0.002920673,0.003154664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004118508,"about_ca_system_score_gemma":0.0007893607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0015177,"about_ca_topic_score_gemma":0.002737388,"domain_scores_codex":[0.9970048,0.001122537,0.0004244226,0.0003702778,0.0008579403,0.000219949],"domain_scores_gemma":[0.998061,0.0006761463,0.0001792872,0.0004288353,0.0004557546,0.0001989012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000238105,0.0006677206,0.001287598,0.0003422185,0.00005262184,0.0001955797,0.0003133869,0.0001679463,0.9847477,0.001381313,0.001694101,0.008911738],"study_design_scores_gemma":[0.00004294467,0.0008633127,0.002616947,0.00002635965,0.0001023888,0.0006610127,0.00004673088,0.002771317,0.9838951,0.0003702593,0.008578113,0.0000254717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3452522,0.009335282,0.5725613,0.001114066,0.001113674,0.002786263,0.009529224,0.008646918,0.04966101],"genre_scores_gemma":[0.4588013,0.008546441,0.4551159,0.0006660952,0.0003971584,0.0031526,0.02329016,0.001089036,0.04894132],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006069971,"threshold_uncertainty_score":0.02030605,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2415803807","doi":"10.1007/978-1-61737-992-5_17","title":"MRI Phenotyping of Genetically Altered Mice","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Toronto Centre for Phenogenomics; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Phenotype; Computational biology; Biology; Genetic similarity; Genetically modified organism; Similarity (geometry); Set (abstract data type); Genetically engineered; Genetics; Computer science; Image (mathematics); Artificial intelligence; Gene; Medicine","authors":[{"name":"Jason P. Lerch","is_ca":true},{"name":"John G. Sled","is_ca":true},{"name":"R. Mark Henkelman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01715358076366364,"gpt":0.3857013743178055,"spread":0.3685477935541419,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008542984,0.0007219652,0.0007285553,0.001867244,0.0004200523,0.0004903002,0.0006235949,0.0005333732,0.002483207],"category_scores_gemma":[0.0007091329,0.0004034575,0.0004961625,0.0008124831,0.0004112194,0.0003086654,0.0005892692,0.001116419,0.00109935],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003196202,"about_ca_system_score_gemma":0.0002778018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005838781,"about_ca_topic_score_gemma":0.001417575,"domain_scores_codex":[0.9994227,0.00009576036,0.00005759158,0.0001560038,0.00020122,0.00006684577],"domain_scores_gemma":[0.9991836,0.0002040158,0.0001982841,0.0001392357,0.0001738712,0.0001009638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001035639,0.00003221222,0.0007601203,0.00009780913,0.00002018417,0.0002017013,0.00005360838,0.0006445993,0.9820779,0.001078836,0.0006136282,0.01431579],"study_design_scores_gemma":[0.00003370161,0.0003340188,0.01406003,0.00007688434,0.0001310339,0.002487957,0.00007806441,0.007467387,0.9508539,0.001435595,0.02299701,0.00004439356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3350861,0.003227263,0.6373705,0.000546028,0.0002479115,0.0007490478,0.009361121,0.005437496,0.007974569],"genre_scores_gemma":[0.3647297,0.008316602,0.6006273,0.0004542177,0.00009887155,0.001993645,0.008921105,0.002109906,0.01274871],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002483207,"threshold_uncertainty_score":0.008307219,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W13404829","doi":"10.1007/978-1-62703-727-3_22","title":"A Prognostic Test to Predict the Risk of Metastasis in Uveal Melanoma Based on a 15-Gene Expression Profile","year":2013,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Ocular Oncology and Treatments","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Cancer Institute","keywords":"Medicine; Melanoma; Oncology; Internal medicine; Metastasis; Disease; Clinical trial; Adjuvant; Adjuvant therapy; Pathology; Cancer; Cancer research","authors":[{"name":"J. William Harbour","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01871194983739567,"gpt":0.3667767048026157,"spread":0.34806475496522,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001020219,0.0003786509,0.0003937578,0.001039407,0.0001749332,0.0004420843,0.0002335864,0.0004195973,0.0006651677],"category_scores_gemma":[0.001920498,0.0001618196,0.0002890019,0.0006575835,0.0002751776,0.0002466043,0.0002298547,0.0005460355,0.0003019106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002737702,"about_ca_system_score_gemma":0.0002579339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008473231,"about_ca_topic_score_gemma":0.001032366,"domain_scores_codex":[0.9995058,0.0001448851,0.00003755907,0.0001264774,0.0001262888,0.0000589971],"domain_scores_gemma":[0.9991714,0.0003402723,0.0001775683,0.00006448796,0.0001675769,0.00007865174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008820826,0.0002442049,0.7064267,0.00006972835,0.0001257634,0.0003234163,0.00009181138,0.002142896,0.2429111,0.0001539497,0.0008954425,0.04573276],"study_design_scores_gemma":[0.00005842816,0.00191435,0.8100794,0.00002464441,0.0002418521,0.001822488,0.0001340023,0.04114152,0.1407408,0.0004704694,0.003307199,0.00006482074],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9714007,0.0008785372,0.02376939,0.0003771509,0.00006336318,0.0001578635,0.001795002,0.000207565,0.001350466],"genre_scores_gemma":[0.9769496,0.0002439156,0.02064174,0.0001830525,0.00003151248,0.0001037054,0.001236386,0.00002042245,0.0005896655],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001039407,"threshold_uncertainty_score":0.005395532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4396219636","doi":"10.1007/978-1-0716-3581-0_26","title":"BOLD v4: A Centralized Bioinformatics Platform for DNA-Based Biodiversity Data","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":147,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; Data science; Biodiversity; Identification (biology); Data management; Resource (disambiguation); Biological data; DNA barcoding; Geography; Computer science; Biology; Evolutionary biology; Ecology; Data mining; Bioinformatics","authors":[{"name":"Sujeevan Ratnasingham","is_ca":true},{"name":"Catherine Wei","is_ca":true},{"name":"D. Susan Willis Chan","is_ca":true},{"name":"Jireh Agda","is_ca":true},{"name":"Josh Agda","is_ca":true},{"name":"Liliana Ballesteros‐Mejia","is_ca":true},{"name":"Hamza Ait Boutou","is_ca":true},{"name":"Zak Mohammad El Bastami","is_ca":true},{"name":"Eddie Ma","is_ca":true},{"name":"Ramya Manjunath","is_ca":true},{"name":"Chris Ho","is_ca":true},{"name":"Angela C Telfer","is_ca":true},{"name":"Jaclyn McKeowan","is_ca":true},{"name":"Miduna Rahulan","is_ca":true},{"name":"Claudia Steinke","is_ca":true},{"name":"Justin Dorsheimer","is_ca":true},{"name":"Megan Milton","is_ca":true},{"name":"Paul D. N. Hebert","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05916941792184425,"gpt":0.3580988747862043,"spread":0.29892945686436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003940281,0.001874088,0.001977046,0.002313631,0.001061918,0.003116647,0.004183793,0.001254949,0.03804638],"category_scores_gemma":[0.008712191,0.001439756,0.001384903,0.002112167,0.0007949342,0.002390631,0.003353791,0.002852233,0.02813817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00091207,"about_ca_system_score_gemma":0.002480852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003915166,"about_ca_topic_score_gemma":0.003669776,"domain_scores_codex":[0.9979849,0.0003171422,0.0001817847,0.0006006726,0.0006831868,0.0002322684],"domain_scores_gemma":[0.9969855,0.001071929,0.000221941,0.0007904585,0.000431064,0.000499143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.006402451,0.0005238094,0.007901961,0.003146176,0.001115467,0.0009156916,0.001003885,0.01757837,0.1312286,0.02158639,0.6573794,0.1512178],"study_design_scores_gemma":[0.002224588,0.0004821969,0.008699246,0.0003920911,0.0004228428,0.0006834471,0.0003313149,0.2107298,0.1376791,0.06403957,0.5737089,0.0006068591],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01002733,0.0005743271,0.3042317,0.0006480851,0.0005541061,0.0004754225,0.09729198,0.5767612,0.009435876],"genre_scores_gemma":[0.1203637,0.001029107,0.3918403,0.001876604,0.0003104609,0.002214454,0.3810202,0.08639411,0.01495112],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.03804638,"threshold_uncertainty_score":0.1272779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3200530198","doi":"10.1007/978-1-0716-1566-9_3","title":"Fixed- and Random-Effects Models","year":2021,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Meta-analysis and systematic reviews","field":"Decision Sciences","cited_by":142,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Raincoast Conservation Foundation; University of British Columbia","funders":"","keywords":"Random effects model; Statistics; Fixed effects model; Variance (accounting); Mathematics; Estimator; Sample size determination; Meta-analysis; Econometrics; Standard error; Panel data","authors":[{"name":"Steve Kanters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.7734362790399716,"gpt":0.6695250715523596,"spread":0.103911207487612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.08559678,0.007230672,0.01690234,0.005841614,0.0006631605,0.003551503,0.006637754,0.006418681,0.01950222],"category_scores_gemma":[0.1699855,0.003109857,0.03104102,0.005948291,0.001804337,0.005021092,0.002134445,0.006981876,0.002522215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002726053,"about_ca_system_score_gemma":0.003768493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005664556,"about_ca_topic_score_gemma":0.007275606,"domain_scores_codex":[0.8472583,0.1312178,0.01071899,0.006808278,0.003379268,0.0006173011],"domain_scores_gemma":[0.7920449,0.1964227,0.004553854,0.004824311,0.00176277,0.0003914086],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01051514,0.0003390187,0.004137828,0.2344287,0.5034782,0.0003991736,0.0003673717,0.02466432,0.0002696144,0.02830412,0.016694,0.1764025],"study_design_scores_gemma":[0.02754988,0.001645542,0.005299308,0.04647486,0.6353933,0.0005968125,0.0001992067,0.05221574,0.0007008455,0.1915792,0.03783533,0.0005099633],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003666823,0.6969769,0.2732292,0.002832309,0.004363552,0.006286622,0.009504455,0.001101454,0.002038629],"genre_scores_gemma":[0.1993814,0.3552548,0.3843375,0.005838874,0.002677127,0.03678457,0.007989677,0.0006025808,0.007133425],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9144032,"threshold_uncertainty_score":0.4526845,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2903963813","doi":"10.1007/978-1-4939-8994-2_29","title":"Description of Ovariectomy Protocol in Mice","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Estrogen and related hormone effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Menopause; Isoflurane; Estrogen; Surgical Menopause; Medicine; Physiology; Guideline; Protocol (science); Bioinformatics; Gynecology; Endocrinology; Biology; Pathology; Alternative medicine; Anesthesia","authors":[{"name":"Vanessa Rodrigues de Souza","is_ca":false},{"name":"Eduardo Mendes","is_ca":false},{"name":"Mateus B. Casaro","is_ca":false},{"name":"Ana Tada Fonseca Brasil Antiorio","is_ca":false},{"name":"Fernando A. Oliveira","is_ca":true},{"name":"Caroline M. Ferreira","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01779242734869368,"gpt":0.391586534193793,"spread":0.3737941068450993,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001146096,0.00282812,0.001239992,0.00488275,0.002032898,0.0009488369,0.002673869,0.002726202,0.04479112],"category_scores_gemma":[0.0006465655,0.001964156,0.002044125,0.001147173,0.001130802,0.0009908009,0.0008689185,0.005220673,0.02515795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009719534,"about_ca_system_score_gemma":0.001140788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001396845,"about_ca_topic_score_gemma":0.004137604,"domain_scores_codex":[0.9988083,0.0001322154,0.0001716597,0.0004168211,0.0002602235,0.0002107895],"domain_scores_gemma":[0.9988465,0.0001409599,0.0002288162,0.0003596843,0.0001559109,0.0002681153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004668753,0.002628259,0.002243125,0.001130337,0.0001542367,0.0007197236,0.0002627088,0.0007714194,0.9064509,0.006086548,0.03511969,0.03976435],"study_design_scores_gemma":[0.001508459,0.002377011,0.01234805,0.0005655561,0.0005320685,0.001696054,0.0001388143,0.001768085,0.6069048,0.004235981,0.367629,0.0002961591],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1878045,0.01925543,0.3370921,0.008838855,0.005896574,0.03796685,0.3039528,0.03069142,0.06850143],"genre_scores_gemma":[0.1405724,0.01984716,0.4084647,0.008700049,0.001101632,0.08682142,0.1486443,0.005778095,0.1800702],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.04479112,"threshold_uncertainty_score":0.1498412,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2638695","doi":"10.1007/978-1-62703-709-9_23","title":"RNA–Protein Interactions: An Overview","year":2013,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"RNA; Computational biology; RNA-binding protein; Computer science; Nucleic acid structure; Biology; Gene; Genetics","authors":[{"name":"Angela Re","is_ca":false},{"name":"Tejal Joshi","is_ca":false},{"name":"Eleonora Kulberkytė","is_ca":false},{"name":"Quaid Morris","is_ca":true},{"name":"Christopher T. Workman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1369502003285953,"gpt":0.533965066480463,"spread":0.3970148661518678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005837915,0.00163621,0.001814944,0.003356955,0.0005295201,0.001505551,0.001450884,0.001632599,0.004489228],"category_scores_gemma":[0.0005663419,0.00063224,0.0006664364,0.003535537,0.0007527636,0.002363546,0.001095863,0.001939578,0.00572436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009379605,"about_ca_system_score_gemma":0.001009546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001129483,"about_ca_topic_score_gemma":0.001229487,"domain_scores_codex":[0.9996761,0.00004079537,0.00004186421,0.00007345605,0.0001348135,0.00003305187],"domain_scores_gemma":[0.9996819,0.0001569924,0.00003807047,0.00001484905,0.00007966039,0.00002857408],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005369131,0.00007758848,0.0002523186,0.01415773,0.00009806466,0.0002381587,0.00008296433,0.0007114568,0.004857531,0.01153573,0.0305955,0.9373394],"study_design_scores_gemma":[0.000005060486,0.00004477486,0.0003879628,0.001041201,0.00003848448,0.0008645216,0.00003420469,0.0001778317,0.0009196147,0.003111606,0.993356,0.00001879301],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001506202,0.9963161,0.0008323377,0.0002137067,0.0002077348,0.000009459193,0.00004413677,0.00002723701,0.00219858],"genre_scores_gemma":[0.0009532021,0.9960707,0.001033142,0.0001428686,0.0002332044,0.00001826774,0.00009165622,0.000006280949,0.001450647],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004489228,"threshold_uncertainty_score":0.01501793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W112811424","doi":"10.1007/978-1-61779-027-0_1","title":"Omics Technologies, Data and Bioinformatics Principles","year":2011,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ontario Institute for Cancer Research","keywords":"Omics; Proteomics; Genomics; Data science; Computer science; Bioinformatics; Computational biology; Biology; Genome; Genetics","authors":[{"name":"Maria Victoria Schneider","is_ca":false},{"name":"Sandra Orchard","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1420693310681263,"gpt":0.454607042046265,"spread":0.3125377109781386,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004624748,0.002024372,0.002363425,0.007537196,0.0009571507,0.005146567,0.002376176,0.002872131,0.003400322],"category_scores_gemma":[0.003985593,0.0006608776,0.001047463,0.008822227,0.004786373,0.006773555,0.002749035,0.00508712,0.004422697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002691161,"about_ca_system_score_gemma":0.002831151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001638469,"about_ca_topic_score_gemma":0.001263284,"domain_scores_codex":[0.9975008,0.0007248315,0.0003196852,0.0003262084,0.001016843,0.0001116254],"domain_scores_gemma":[0.9971545,0.001829855,0.0001962825,0.000216986,0.0004819723,0.000120413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004266042,0.00006915911,0.0003286361,0.01113152,0.0001062516,0.0004646673,0.0003530796,0.0009875057,0.002027267,0.2672003,0.06559419,0.6516948],"study_design_scores_gemma":[0.000004586152,0.00001509687,0.000235317,0.001808636,0.0000154312,0.0006836489,0.00007907828,0.0001434398,0.0004106475,0.05204734,0.9445353,0.0000214639],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001746277,0.9661745,0.0162416,0.0045871,0.001789938,0.0000566979,0.0002089731,0.0001273399,0.01063925],"genre_scores_gemma":[0.00174715,0.9665468,0.02057511,0.003881985,0.002537338,0.0001742786,0.0003722327,0.00004997115,0.004115198],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.007537196,"threshold_uncertainty_score":0.02445835,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1882164115","doi":"10.1007/978-1-59745-583-1_18","title":"Fluorescent In Situ Hybridization Protocols in Drosophila Embryos and Tissues","year":2008,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"In situ hybridization; RNA; Biology; In situ; Molecular biology; Cell biology; Computational biology; Messenger RNA; Gene; Chemistry; Genetics","authors":[{"name":"Éric Lécuyer","is_ca":true},{"name":"Neela Parthasarathy","is_ca":true},{"name":"Henry M. Krause","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0311731637588023,"gpt":0.4109291857998849,"spread":0.3797560220410826,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002117445,0.001496031,0.001161735,0.001826047,0.001631201,0.0009440292,0.002422671,0.001251513,0.01928871],"category_scores_gemma":[0.0009339245,0.001471471,0.001060037,0.001862573,0.0007920269,0.000808617,0.0008737514,0.003284144,0.01809549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001240556,"about_ca_system_score_gemma":0.001298896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001985481,"about_ca_topic_score_gemma":0.006892031,"domain_scores_codex":[0.9984258,0.0003267365,0.0002076825,0.0002940447,0.0006016392,0.0001440772],"domain_scores_gemma":[0.9994119,0.0001503804,0.00006701873,0.0001763778,0.0001465183,0.00004766115],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008977415,0.0000846864,0.000121567,0.0009226679,0.00002842041,0.0002854778,0.0001635493,0.0007235213,0.9510714,0.004544097,0.01353972,0.02842506],"study_design_scores_gemma":[0.00007248261,0.0002413769,0.001145936,0.0002257711,0.00007363865,0.001096156,0.00008325323,0.002087264,0.661835,0.002120954,0.3309408,0.00007732883],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02075998,0.007417382,0.9091093,0.0007002159,0.001381519,0.006048359,0.01378345,0.009562655,0.03123707],"genre_scores_gemma":[0.01650045,0.01002417,0.9155788,0.0004616223,0.0001642081,0.008515457,0.01775316,0.001632596,0.02936948],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01928871,"threshold_uncertainty_score":0.06452721,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3013546250","doi":"10.1007/978-1-0716-0520-2_6","title":"Stereolithography 3D Bioprinting","year":2020,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":120,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Okanagan University College; Kelowna General Hospital; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Stereolithography; 3D bioprinting; Nanotechnology; Computer science; Materials science; Tissue engineering; Systems engineering; Biomedical engineering; Engineering","authors":[{"name":"Hitendra Kumar","is_ca":true},{"name":"Keekyoung Kim","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03844693241102008,"gpt":0.4035795920334167,"spread":0.3651326596223966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001715089,0.0004815526,0.0003928856,0.0006506286,0.0003419132,0.0007502203,0.0005382585,0.0005830609,0.007692814],"category_scores_gemma":[0.0001992059,0.0006983817,0.0004794188,0.0004769058,0.000428652,0.0004483081,0.0007535216,0.0009314949,0.003048526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000783107,"about_ca_system_score_gemma":0.0005954882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001046465,"about_ca_topic_score_gemma":0.00247588,"domain_scores_codex":[0.9994038,0.00001674844,0.00002866574,0.00008722841,0.000410914,0.00005261803],"domain_scores_gemma":[0.9998066,0.00003504647,0.00004605726,0.00006579754,0.00003586286,0.0000106911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003970811,0.00003253848,0.0001348243,0.0001928754,0.000008826948,0.0000831485,0.00006821168,0.001113037,0.9652215,0.004876355,0.002066107,0.02616286],"study_design_scores_gemma":[0.00002031066,0.00008619267,0.001653832,0.0000220635,0.00001192722,0.0004397141,0.00001987291,0.007973101,0.9500594,0.0008248434,0.03884576,0.00004316875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.369003,0.005186708,0.4579735,0.0007268186,0.001598685,0.0005146202,0.003710221,0.008815981,0.1524706],"genre_scores_gemma":[0.6491752,0.002723872,0.2740165,0.0005781395,0.0001917323,0.0003930481,0.002128844,0.001116897,0.06967578],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007692814,"threshold_uncertainty_score":0.02573502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1553962779","doi":"10.1007/978-1-60327-214-8_1","title":"The Development of Germline Stem Cells in Drosophila","year":2008,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":120,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Stem cell; Biology; Cell biology; Germline; Adult stem cell; Stem cell factor; Cell fate determination; Cellular differentiation; Genetics; Progenitor cell; Transcription factor; Gene","authors":[{"name":"David A. Dansereau","is_ca":true},{"name":"Paul Lasko","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05063912849039402,"gpt":0.3861274232861992,"spread":0.3354882947958052,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007134516,0.0002746358,0.000135025,0.000431606,0.0003505896,0.0003458014,0.0002672618,0.0002650493,0.001114343],"category_scores_gemma":[0.00005273831,0.0002106246,0.0001793177,0.0001525897,0.000319004,0.0002180241,0.0002409978,0.000408459,0.0007236528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006080994,"about_ca_system_score_gemma":0.0002361532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001913585,"about_ca_topic_score_gemma":0.003467756,"domain_scores_codex":[0.9999477,0.000005660152,0.00000497686,0.00001418879,0.0000216842,0.000005722139],"domain_scores_gemma":[0.999966,0.000003630715,0.00001260378,0.000003515448,0.000003817133,0.00001037767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006901792,0.00001689645,0.001081824,0.0002508859,0.000009405643,0.0002885037,0.0001173711,0.0007316762,0.963376,0.01329273,0.0007030016,0.02006269],"study_design_scores_gemma":[0.00008159814,0.0004255938,0.02362174,0.0001557868,0.00005402306,0.001950797,0.0002904097,0.004938705,0.7967989,0.006449929,0.1651984,0.00003413098],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.7995149,0.03918348,0.1048522,0.0009294482,0.0002851705,0.0003873981,0.006208785,0.001550564,0.04708807],"genre_scores_gemma":[0.8984437,0.0144661,0.06130165,0.0002173391,0.00003870873,0.0001801466,0.002948799,0.0001102671,0.02229337],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.001913585,"threshold_uncertainty_score":0.004412115,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W34714686","doi":"10.1007/978-1-60761-863-8_3","title":"The Principles of MiRNA-Masking Antisense Oligonucleotides Technology","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Canadian Institutes of Health Research","keywords":"Masking (illustration); Oligonucleotide; microRNA; Computer science; Computational biology; Biology; Genetics; Art; Gene","authors":[{"name":"Zhiguo Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01559855754383704,"gpt":0.3636516161898383,"spread":0.3480530586460013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001889428,0.001022963,0.001116057,0.001278832,0.0008373532,0.001433314,0.001483088,0.0015843,0.001769757],"category_scores_gemma":[0.001019832,0.001228538,0.001086958,0.0006186515,0.002468495,0.001173746,0.001387696,0.004846242,0.00271611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007904092,"about_ca_system_score_gemma":0.0009539184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000281131,"about_ca_topic_score_gemma":0.0003258767,"domain_scores_codex":[0.9981699,0.000355913,0.0001381319,0.0003878997,0.0008278204,0.0001202548],"domain_scores_gemma":[0.9995115,0.000159942,0.0000772624,0.00008862935,0.000120202,0.00004248478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001803827,0.0002036177,0.0005213698,0.001891136,0.00009555663,0.0006873191,0.0006725367,0.00162929,0.6456394,0.1786478,0.008020634,0.1618109],"study_design_scores_gemma":[0.00008843115,0.0008250453,0.0008505863,0.0002670563,0.00007124486,0.003178756,0.0001340577,0.004384033,0.427892,0.05714964,0.504961,0.0001980716],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.007480931,0.02539882,0.9352757,0.002097216,0.001841878,0.0009587904,0.0002951172,0.001585252,0.02506643],"genre_scores_gemma":[0.0963345,0.04155226,0.8182696,0.003688067,0.001033562,0.004231097,0.0006172085,0.0002809534,0.03399279],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001889428,"threshold_uncertainty_score":0.009992361,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2727952875","doi":"10.1007/978-1-61779-827-6_8","title":"Fourier Transform Infrared Spectroscopy for Molecular Analysis of Microbial Cells","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; The Scarborough Hospital","funders":"","keywords":"Fourier transform infrared spectroscopy; Infrared; Fourier transform; Fourier transform spectroscopy; Infrared spectroscopy; Spectroscopy; Materials science; Analytical Chemistry (journal); Chemistry; Physics; Optics; Environmental chemistry; Organic chemistry; Astronomy","authors":[{"name":"Jesús J. Ojeda","is_ca":false},{"name":"Maria Dittrich","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01558674512583194,"gpt":0.4241593558317131,"spread":0.4085726107058811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001552425,0.001131439,0.001193991,0.002238738,0.0005286071,0.001142014,0.001420721,0.001340376,0.0179246],"category_scores_gemma":[0.002390496,0.0004975347,0.0008714744,0.003210845,0.0005049921,0.001608936,0.001294222,0.002853366,0.01456693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006385518,"about_ca_system_score_gemma":0.0007706151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006321399,"about_ca_topic_score_gemma":0.000874779,"domain_scores_codex":[0.9982467,0.0003010815,0.000111182,0.0003128245,0.0009435439,0.00008479792],"domain_scores_gemma":[0.9990553,0.0003384021,0.000107327,0.0001089134,0.000348125,0.00004198667],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002576915,0.0002194209,0.001203823,0.005667505,0.0002197696,0.0005880963,0.0004026718,0.002363363,0.4877944,0.01503133,0.070742,0.4155099],"study_design_scores_gemma":[0.00004661894,0.0002785958,0.003165184,0.000882933,0.0001094554,0.001544826,0.0002131854,0.01239022,0.2315395,0.008414723,0.7412355,0.0001791763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01841445,0.09182531,0.8149599,0.001982792,0.004664926,0.0008976153,0.009438505,0.01206457,0.04575191],"genre_scores_gemma":[0.06933558,0.07390762,0.7753661,0.001661981,0.0009368843,0.002819878,0.01235425,0.002132261,0.0614855],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0179246,"threshold_uncertainty_score":0.05996376,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1602584517","doi":"10.1007/978-1-60327-136-3_1","title":"Expressed Sequence Tags: An Overview","year":2009,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Expressed sequence tag; Biology; Computational biology; Profiling (computer programming); Sequence (biology); cDNA library; DNA sequencing; Genome; Sequence analysis; Complementary DNA; Genetics; Gene; Bioinformatics; Computer science","authors":[{"name":"John Parkinson","is_ca":true},{"name":"Mark Blaxter","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1444049863806436,"gpt":0.4880965416950171,"spread":0.3436915553143735,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008279454,0.001509575,0.001699043,0.003036446,0.0004297278,0.002284243,0.001781813,0.001796627,0.003844935],"category_scores_gemma":[0.0005148079,0.000878039,0.0006741221,0.004734634,0.0007428777,0.002864785,0.001023087,0.003698688,0.02071813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001067813,"about_ca_system_score_gemma":0.0007639938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007500438,"about_ca_topic_score_gemma":0.000775336,"domain_scores_codex":[0.9994233,0.00006622637,0.00007307348,0.0001047185,0.0002923363,0.00004035971],"domain_scores_gemma":[0.999746,0.000072786,0.00003246034,0.00001886135,0.00009796164,0.00003194392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000892118,0.000146517,0.0001662419,0.007998225,0.00006046905,0.0004186278,0.0001028178,0.0005044061,0.03783883,0.0122502,0.06770311,0.8727214],"study_design_scores_gemma":[0.000004123366,0.00002441668,0.0001646555,0.0003871206,0.00001063828,0.0006539945,0.00001982385,0.00007041961,0.002618697,0.001751384,0.9942831,0.00001166243],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006155798,0.9661728,0.01386964,0.001166212,0.001407813,0.00008918966,0.0006393693,0.0004596793,0.0155798],"genre_scores_gemma":[0.001603838,0.9669666,0.01289809,0.001124533,0.0005467788,0.0001247206,0.001717463,0.00009350866,0.01492449],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003844935,"threshold_uncertainty_score":0.01286262,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1526348192","doi":"10.1007/978-1-60327-492-0_15","title":"Mammographic Density: A Heritable Risk Factor for Breast Cancer","year":2008,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Digital Radiography and Breast Imaging","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Hospital for Sick Children; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"MAMMOGRAPHIC DENSITY; Breast cancer; Medicine; Cancer; Oncology; Internal medicine; Mammography","authors":[{"name":"Norman F. Boyd","is_ca":true},{"name":"Lisa J. Martin","is_ca":true},{"name":"Johanna M. Rommens","is_ca":true},{"name":"Andrew D. Paterson","is_ca":true},{"name":"Salomon Minkin","is_ca":true},{"name":"Martin J. Yaffe","is_ca":true},{"name":"Jennifer Stone","is_ca":false},{"name":"John L. Hopper","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04474322865054482,"gpt":0.4361555219320246,"spread":0.3914122932814798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004580615,0.001031902,0.001653415,0.002165888,0.0002425164,0.0006466318,0.0008006755,0.00109236,0.003576499],"category_scores_gemma":[0.0007748732,0.0002541029,0.0003569038,0.002334926,0.0006792134,0.0008915119,0.0004486985,0.001241554,0.002734075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006102627,"about_ca_system_score_gemma":0.0006540125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002439937,"about_ca_topic_score_gemma":0.002215876,"domain_scores_codex":[0.9998019,0.00003330037,0.00002288328,0.00004981388,0.00007827711,0.0000138296],"domain_scores_gemma":[0.9997578,0.0001082357,0.00003793447,0.000008623477,0.00006477145,0.00002271043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006034838,0.00005774761,0.001045823,0.00494348,0.00009718778,0.0002334613,0.00004212899,0.0002345897,0.0006116702,0.001997551,0.030115,0.9605609],"study_design_scores_gemma":[0.00002462397,0.00009511163,0.008752214,0.003895586,0.0001921062,0.005428945,0.0001055229,0.00015498,0.0005322892,0.003598475,0.9771842,0.00003596566],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000168298,0.9978969,0.0001708204,0.0004200733,0.000129748,0.000003693942,0.00002703962,0.00001042595,0.001173015],"genre_scores_gemma":[0.001117671,0.9976411,0.0001545689,0.000134674,0.0001616031,0.000005270669,0.00004134391,0.000001238962,0.0007425658],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003576499,"threshold_uncertainty_score":0.01196456,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4306910300","doi":"10.1007/978-1-0716-2815-7_14","title":"MicroRNA Regulatory Network Analysis Using miRNet 2.0","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"","keywords":"microRNA; Gene regulatory network; Computational biology; Context (archaeology); Regulation of gene expression; Biology; Gene; Gene expression; Computer science; Genetics","authors":[{"name":"Le Chang","is_ca":true},{"name":"Jianguo Xia","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02336332203324069,"gpt":0.3943206813803292,"spread":0.3709573593470885,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001254347,0.001273794,0.0009352633,0.003541945,0.0007464692,0.001112177,0.0008289911,0.0004098821,0.01280591],"category_scores_gemma":[0.001924086,0.0005178218,0.001483371,0.001672116,0.0003271246,0.0007589867,0.0008086301,0.0008055262,0.002361641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006025402,"about_ca_system_score_gemma":0.001259928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002233972,"about_ca_topic_score_gemma":0.003384383,"domain_scores_codex":[0.9995354,0.0001089365,0.00004477105,0.0001617766,0.0001021124,0.00004697898],"domain_scores_gemma":[0.9994006,0.0003265991,0.0000858752,0.00005755154,0.00008653726,0.00004280425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003923395,0.0009155126,0.03063778,0.00802415,0.002342729,0.00241309,0.001698042,0.2045227,0.2471818,0.08165251,0.09351105,0.3231773],"study_design_scores_gemma":[0.0002100083,0.0005349061,0.01162178,0.0002298946,0.0007898289,0.00085824,0.0003049396,0.7777315,0.05330022,0.03312705,0.1211572,0.000134503],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1518227,0.002610095,0.6389025,0.0007105418,0.0004259256,0.00072688,0.09511042,0.09408313,0.01560783],"genre_scores_gemma":[0.3789852,0.001438005,0.5013942,0.0002576239,0.00009753902,0.002173599,0.10373,0.004496645,0.007427203],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01280591,"threshold_uncertainty_score":0.04284,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}