{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":77,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":77,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"d306f90100c2","filters":{"venue":"Microbial Cell Factories"}},"results":[{"id":"W2559480110","doi":"10.1186/s12934-016-0603-7","title":"Current knowledge and perspectives of Paenibacillus: a review","year":2016,"lang":"en","type":"review","venue":"Microbial Cell Factories","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":986,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Paenibacillus; Biology; Paenibacillus polymyxa; Bioproducts; Biotechnology; Microbiology; Bacteria; Biofuel","retraction":null,"screen_n_in":null,"score":{"opus":0.07769226924299771,"gpt":0.3287490921294833,"spread":0.2510568228864856,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000202694,0.0003303587,0.001204038,0.0000242641,0.0001116652,0.00003385215,0.0003045858,0.0001664001,0.001323561],"category_scores_gemma":[0.00008736865,0.00009699085,0.0003578425,0.0002832729,0.0002164865,0.00005530151,0.0001905464,0.0002568125,0.00009769035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005275975,"about_ca_system_score_gemma":0.00008573182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003139692,"about_ca_topic_score_gemma":0.00004776098,"domain_scores_codex":[0.9985133,0.0002569606,0.0004133016,0.0003764898,0.0001333523,0.0003065316],"domain_scores_gemma":[0.9989247,0.0005101001,0.0002174594,0.00008195922,0.0001716881,0.00009412259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002854359,0.00005276273,0.000005318687,0.03066687,0.00001717283,8.13011e-7,0.0001485099,7.299349e-11,0.001318703,0.00004602981,0.002704259,0.9650367],"study_design_scores_gemma":[0.0000341173,0.00008978353,0.00001979847,0.03093421,0.0001033085,0.000005704973,0.00002811992,3.216531e-9,0.00006332793,0.00002047084,0.9684622,0.000239],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001846551,0.997645,2.487669e-7,0.00003432432,0.0002054328,0.0005427561,0.0005424646,0.00002047238,0.0008246943],"genre_scores_gemma":[0.0001877333,0.9988213,0.000003633774,0.000003126884,0.00041228,0.00002067267,0.0000912627,0.000002588977,0.0004574634],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9657579,"threshold_uncertainty_score":0.9995894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126901783","doi":"10.1186/1475-2859-10-s1-s20","title":"Bacteriophages of lactic acid bacteria and their impact on milk fermentations","year":2011,"lang":"en","type":"review","venue":"Microbial Cell Factories","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacteria; Lactic acid; Fermentation; Biotechnology; Biology; Bacteriophage; Industrial fermentation; Virulence; Dairy industry; Microbiology; Food science; Biochemistry; Escherichia coli; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02560339639098269,"gpt":0.2787460126683786,"spread":0.2531426162773959,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007679732,0.0007762711,0.001346775,0.0001267566,0.0001948679,0.000124854,0.0003742352,0.0003177398,0.009164138],"category_scores_gemma":[0.00001368474,0.0005223625,0.0005815382,0.0002282612,0.0003455383,0.0003430155,0.00030704,0.0004211122,0.0004870785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002966999,"about_ca_system_score_gemma":0.00006619652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006420002,"about_ca_topic_score_gemma":0.00009861024,"domain_scores_codex":[0.9981036,0.0001649384,0.000655802,0.0005774526,0.00007505913,0.0004231959],"domain_scores_gemma":[0.9986492,0.0001216615,0.0005654041,0.0004848198,0.00001845725,0.0001604662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008533061,0.0004590027,0.00003583583,0.003110854,0.0002962342,0.000007532944,0.002391933,2.104822e-7,0.6593513,0.000007636312,0.004140682,0.3301135],"study_design_scores_gemma":[0.0001835086,0.0002733156,0.001606809,0.0009822462,0.0002996153,0.00005527612,0.00006922271,5.232804e-8,0.03128975,0.000005584764,0.9646888,0.0005458554],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.07138091,0.9198101,0.00001544822,0.00001020226,0.001849317,0.001055715,0.002829988,0.00008014025,0.002968158],"genre_scores_gemma":[0.02688939,0.9705176,0.0001970189,0.00003011775,0.0001440322,0.00003367463,0.0003832138,0.00009771439,0.001707213],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9605481,"threshold_uncertainty_score":0.9997228,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2559740190","doi":"10.1186/s12934-016-0602-8","title":"Rhodococcus aetherivorans BCP1 as cell factory for the production of intracellular tellurium nanorods under aerobic conditions","year":2016,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":190,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Calgary","keywords":"Chemistry; Anaerobic exercise; Nanorod; Nanomaterials; Food science; Materials science; Nanotechnology; Chemical engineering; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.02011704256257516,"gpt":0.2513040920353271,"spread":0.231187049472752,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003036197,0.000359301,0.0004201444,0.00006979101,0.0004022451,0.00005497012,0.0004316262,0.000323991,0.0004881995],"category_scores_gemma":[0.000204635,0.0002025656,0.000253682,0.0002024401,0.000619129,0.0001876126,0.00005480284,0.0001937077,0.0001405149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002062626,"about_ca_system_score_gemma":0.00005851888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002848708,"about_ca_topic_score_gemma":0.0000891227,"domain_scores_codex":[0.9978917,0.0002590345,0.0005770914,0.0005475683,0.0001948896,0.000529714],"domain_scores_gemma":[0.9976648,0.001057607,0.0003546828,0.0005785029,0.0002614903,0.00008289587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002561585,0.0001585668,0.0007004397,0.0001346683,0.00003424154,2.742774e-7,0.001090983,0.00003550135,0.992456,0.00009946687,0.004804636,0.0002290994],"study_design_scores_gemma":[0.0005245644,0.000288135,0.001058216,0.00005633072,0.00008350295,0.000004809172,0.0006447903,0.00000113916,0.9219131,0.0003750808,0.07474721,0.0003030687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841314,0.0008644481,0.003368164,0.00152746,0.007890712,0.001594515,0.0001757252,0.0001658809,0.0002816854],"genre_scores_gemma":[0.9948719,0.00004514485,0.0001978127,0.00009817102,0.0007522366,0.00008189787,0.00004542628,0.00005938659,0.003848013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07054281,"threshold_uncertainty_score":0.8260384,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132780790","doi":"10.1186/1475-2859-10-s1-s8","title":"Contribution of glutamate decarboxylase in Lactobacillus reuteri to acid resistance and persistence in sourdough fermentation","year":2011,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":144,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Lactobacillus reuteri; Glutamate decarboxylase; Fermentation; Biology; Glutamine; Biochemistry; Bacteria; Lactic acid; Glutamate receptor; Microbiology; Amino acid; Lactobacillus; Enzyme; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02246803656500478,"gpt":0.1968161402204003,"spread":0.1743481036553955,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009647659,0.00009678012,0.0001471813,0.00002126367,0.00004199489,0.00002064017,0.00009579368,0.0000697366,0.00003163413],"category_scores_gemma":[0.00002096025,0.00005025516,0.00002442603,0.0002236916,0.00005169988,0.00009607427,0.00005239342,0.00006284351,0.000002454971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005011625,"about_ca_system_score_gemma":0.000006058483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003089137,"about_ca_topic_score_gemma":0.004394044,"domain_scores_codex":[0.9993095,0.0000400661,0.0002093773,0.0001913181,0.00006034213,0.0001894102],"domain_scores_gemma":[0.9997925,0.00001564026,0.00006580538,0.00003641947,0.00004473707,0.00004486092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001998086,0.00005916679,0.01819218,0.00001161938,0.000001788879,0.000002862084,0.001554413,4.219754e-7,0.9795658,0.00007221493,0.00001330353,0.0003264238],"study_design_scores_gemma":[0.0002756411,0.0001627907,0.3593279,0.00004278553,0.000003542499,6.444604e-7,0.0006106038,0.000001217454,0.6387532,0.0001378279,0.0005675257,0.0001163515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991162,0.0001444625,0.000005732771,0.0001193487,0.00007591513,0.0001859412,0.00008043979,0.000009325119,0.0002626291],"genre_scores_gemma":[0.9996396,0.00005705227,0.0001530407,0.00004440952,0.00001331317,0.000004026645,0.0000298106,7.159989e-7,0.00005805614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3411357,"threshold_uncertainty_score":0.245198,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1579490863","doi":"10.1186/s12934-015-0252-2","title":"Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Concordia University","funders":"Canada Research Chairs; Genome Canada","keywords":"Metabolomics; Yeast; Metabolic engineering; Biology; Computational biology; Biotechnology; Bioinformatics; Biochemistry; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.01556885597641706,"gpt":0.2117700821516633,"spread":0.1962012261752462,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001858816,0.0002519557,0.0003254107,0.00009642666,0.00004263129,0.00002814482,0.0001689288,0.0001608213,0.000009006675],"category_scores_gemma":[0.0001436661,0.0002479042,0.0001103986,0.0002275398,0.00005188135,0.00001687729,0.0001053633,0.0001200961,0.000004551875],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002319552,"about_ca_system_score_gemma":0.0001231895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001345655,"about_ca_topic_score_gemma":0.000006623113,"domain_scores_codex":[0.9988851,0.00001844587,0.0003160272,0.0003617347,0.0001163388,0.0003023843],"domain_scores_gemma":[0.9992288,0.000002082006,0.0001281803,0.0003520346,0.0001848464,0.0001040765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006343677,0.00003909677,0.0001697922,0.00004772785,0.00005009684,5.000646e-7,0.000210791,0.005104995,0.9935071,0.00003678713,0.0006458622,0.0001238494],"study_design_scores_gemma":[0.0003989595,0.0000503932,0.0001717652,0.00001166951,0.00005512935,0.00001726786,0.00006798474,0.0001023477,0.9205668,0.000002734211,0.0783033,0.0002516701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891716,0.004696738,0.004287008,0.000008226233,0.001497794,0.0001444488,0.00009843318,0.00003654889,0.00005921996],"genre_scores_gemma":[0.9893896,0.00009923231,0.009076044,0.00001474486,0.0008635662,0.000002433061,0.0001549374,0.00004582065,0.000353616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07765744,"threshold_uncertainty_score":0.9999973,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119364523","doi":"10.1186/s12934-015-0198-4","title":"Serine protease inhibitors protect better than IL-10 and TGF-β anti-inflammatory cytokines against mouse colitis when delivered by recombinant lactococci","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Conseil Régional Midi-Pyrénées; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche","keywords":"Elafin; Lactococcus lactis; Serine protease; SLPI; Colitis; Protease; Proteases; Microbiology; Biology; Inflammation; Immunology; Lactic acid; Enzyme; Biochemistry; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01177646660476505,"gpt":0.1820380392015578,"spread":0.1702615725967927,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001620702,0.000337706,0.0003189844,0.0000201049,0.000247116,0.0002253253,0.0002359452,0.0002112205,0.0001107961],"category_scores_gemma":[0.00003281776,0.0001590442,0.00008456457,0.0001248035,0.0001555696,0.0002437452,0.0002206366,0.0002143661,0.00003089901],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007078092,"about_ca_system_score_gemma":0.00003095626,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004531923,"about_ca_topic_score_gemma":0.0002964408,"domain_scores_codex":[0.998448,0.0001050319,0.0003362473,0.0004541008,0.000179207,0.0004774857],"domain_scores_gemma":[0.9992797,0.00002837698,0.0001588757,0.0001054418,0.0001502316,0.0002773295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001478695,0.0001281189,0.005581439,0.00004377835,0.00001738935,0.00001113312,0.0002855137,4.549962e-7,0.9723827,0.000004794406,0.01951338,0.001883444],"study_design_scores_gemma":[0.0008525974,0.0006433079,0.006174961,0.00004637368,0.00001612268,0.00000599602,0.0002455343,0.000005393988,0.7313116,0.0001085215,0.2600423,0.0005473659],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968404,0.0001378035,0.000002036585,0.0006156951,0.0002689099,0.001154451,0.0006740155,0.0001192246,0.0001874611],"genre_scores_gemma":[0.9970832,0.00006334111,0.00007878262,0.0001555455,0.000251792,0.00005192171,0.0003717079,0.000006562731,0.001937108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2410711,"threshold_uncertainty_score":0.6485634,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768480562","doi":"10.1186/s12934-017-0826-2","title":"Ochrobactrum sp. MPV1 from a dump of roasted pyrites can be exploited as bacterial catalyst for the biogenesis of selenium and tellurium nanoparticles","year":2017,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":109,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Regione del Veneto","keywords":"Selenium; Chalcogen; Chemistry; Nanoparticle; Metalloid; Nanotechnology; Nanomaterials; Shewanella oneidensis; Tellurium; Catalysis; Nuclear chemistry; Bacteria; Materials science; Biochemistry; Inorganic chemistry; Organic chemistry; Biology; Metal","retraction":null,"screen_n_in":null,"score":{"opus":0.02776596995088317,"gpt":0.2435579425756073,"spread":0.2157919726247242,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001821927,0.0003138134,0.0005998705,0.00005240361,0.000494724,0.000175785,0.000581455,0.0002486801,0.00007041635],"category_scores_gemma":[0.0003489119,0.0002191793,0.0001644242,0.000092562,0.0007030476,0.0001511256,0.0001944196,0.00009636264,0.000003683639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000477452,"about_ca_system_score_gemma":0.00003976813,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0305115,"about_ca_topic_score_gemma":0.002656929,"domain_scores_codex":[0.998287,0.0001207393,0.0005870931,0.0004291879,0.0001630348,0.0004129319],"domain_scores_gemma":[0.9976969,0.0006847234,0.0006389365,0.000689821,0.0001972195,0.00009241052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001055807,0.00008779221,0.02995512,0.0001215774,0.00008804561,3.111357e-7,0.001781168,0.000001014433,0.9663045,0.000009422109,0.000456273,0.000138941],"study_design_scores_gemma":[0.001034008,0.0002905816,0.03196231,0.00005056663,0.0001666877,0.000002047791,0.0008489604,0.000007769738,0.9591552,0.0000368775,0.006193311,0.0002516804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941028,0.0004940835,0.000008462415,0.0007310733,0.00197667,0.0006717997,0.001946637,0.00004843257,0.000020033],"genre_scores_gemma":[0.9989565,0.00003080495,0.0002137851,0.00004053192,0.0004700012,0.00002547195,0.0001738941,0.00003885133,0.00005018634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02785457,"threshold_uncertainty_score":0.9759444,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1620045384","doi":"10.1186/s12934-015-0254-0","title":"Ribosome binding site libraries and pathway modules for shikimic acid synthesis with Corynebacterium glutamicum","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Petroleum Technology Alliance Canada","keywords":"Corynebacterium glutamicum; Metabolic engineering; Ribosomal binding site; Gene; Biochemistry; Biology; Synthetic biology; Fermentation; Metabolic pathway; Chemistry; Ribosome; Genetics; RNA","retraction":null,"screen_n_in":null,"score":{"opus":0.009808982180829859,"gpt":0.1816380243359115,"spread":0.1718290421550816,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009443081,0.0002444337,0.0002218905,0.00005481509,0.0001086451,0.0001181238,0.0001073775,0.0001541155,0.000003903298],"category_scores_gemma":[0.0000722209,0.0002041686,0.00005053395,0.00007608661,0.0001285675,0.00002351467,0.00007567005,0.00007230683,0.000005522932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001629232,"about_ca_system_score_gemma":0.00006829239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002023663,"about_ca_topic_score_gemma":0.00002234016,"domain_scores_codex":[0.9990633,0.00002760059,0.0001609306,0.0003999172,0.0000627374,0.0002855158],"domain_scores_gemma":[0.9994944,0.000008319813,0.00007610558,0.0002255046,0.0000909386,0.0001047639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002501219,0.00002666031,0.0004115675,0.00008574981,0.00003083536,8.071125e-7,0.0002251988,0.00002124354,0.9971774,0.00001785714,0.001387967,0.000364586],"study_design_scores_gemma":[0.0003764117,0.0001995709,0.0002453239,0.00001893664,0.00002976508,0.00001937975,0.0001078784,0.000003525369,0.8852765,0.000006990268,0.1134427,0.0002730465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953393,0.001155684,0.002120433,0.00008303211,0.0005237028,0.0002235222,0.0004652795,0.00004868595,0.0000403596],"genre_scores_gemma":[0.9935716,0.0001123254,0.004482587,0.00003232895,0.0005914072,0.00002403685,0.0003689901,0.00004502974,0.0007716671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1120547,"threshold_uncertainty_score":0.8325753,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2988195872","doi":"10.1186/s12934-019-1239-1","title":"Isolation, identification, and potential probiotic characterization of isolated lactic acid bacteria and in vitro investigation of the cytotoxicity, antioxidant, and antidiabetic activities in fermented sausage","year":2019,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Meat and Animal Product Quality","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"United Arab Emirates University; University of Manitoba","keywords":"Probiotic; Isolation (microbiology); Lactic acid; Fermentation; Bacteria; Antioxidant; Biology; Microbiology; Cytotoxicity; In vitro; Food science; Identification (biology); Chemistry; Biotechnology; Biochemistry; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.00906963952862139,"gpt":0.1863019103508898,"spread":0.1772322708222684,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001806637,0.0001015407,0.0001896593,0.00002743157,0.0000551459,0.00004804807,0.00005983561,0.00007143072,0.00001662304],"category_scores_gemma":[0.00002122103,0.00005078211,0.0000161859,0.0002286541,0.0001422947,0.0002903145,0.0000600815,0.00007428988,3.190069e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001140059,"about_ca_system_score_gemma":0.000009451859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001070244,"about_ca_topic_score_gemma":0.00007655124,"domain_scores_codex":[0.9991552,0.0001543179,0.0003078098,0.0002065544,0.00006948295,0.0001066358],"domain_scores_gemma":[0.9996411,0.00003191547,0.0002181907,0.00004704106,0.00004219866,0.00001952865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008009403,0.00002521171,0.2003421,0.0001126442,0.000002326356,6.082887e-8,0.0004869309,7.256999e-8,0.7988514,0.00000317592,5.00719e-7,0.00009545748],"study_design_scores_gemma":[0.0001011138,0.0000278791,0.501889,0.00002539739,0.000003767015,6.46496e-7,0.00008298603,0.00001163596,0.4977892,0.00002235744,0.00000180003,0.00004424029],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992686,0.00004809583,0.000002517075,0.000165281,0.00009199877,0.000350594,0.00006379855,0.000006561862,0.000002541818],"genre_scores_gemma":[0.999795,0.00004986928,0.00001148906,0.00001299189,0.00002082083,0.000001651292,0.00006594648,0.000001274782,0.00004095031],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3015469,"threshold_uncertainty_score":0.2070834,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2819680764","doi":"10.1186/s12934-018-0953-4","title":"Effects of sodium bicarbonate on cell growth, lipid accumulation, and morphology of Chlorella vulgaris","year":2018,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Algal biology and biofuel production","field":"Energy","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chlorella vulgaris; Sodium bicarbonate; Cell growth; Bicarbonate; Food science; Biochemistry; Sodium; Biology; Chemistry; Botany; Algae","retraction":null,"screen_n_in":null,"score":{"opus":0.00948432300882574,"gpt":0.2180938433836029,"spread":0.2086095203747772,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008459893,0.0001759376,0.0002736993,0.00009050828,0.00008798182,0.000006878761,0.0001134782,0.0002798634,0.00008134898],"category_scores_gemma":[0.00006525782,0.0001480216,0.00005286105,0.0001330774,0.0005677908,0.00005370369,0.00006683035,0.0001311234,0.00003157828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001674741,"about_ca_system_score_gemma":0.00002220786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005654031,"about_ca_topic_score_gemma":0.00003658403,"domain_scores_codex":[0.9990703,0.00009787446,0.0002660733,0.0003002661,0.00006715068,0.000198275],"domain_scores_gemma":[0.9992931,0.0001344008,0.000190452,0.0001722469,0.0001741021,0.00003566205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004279646,0.0001031135,0.003498398,0.0002082583,0.00002150334,0.00000106155,0.0005831527,0.000003119834,0.993961,0.0004484403,0.000561016,0.0001829554],"study_design_scores_gemma":[0.0005771859,0.0006166418,0.007767052,0.00001154462,0.0000353916,0.00000226223,0.00002165147,0.000002721251,0.9846673,0.0005355455,0.005622234,0.0001404679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962869,0.0002012949,0.00002291146,0.00007109414,0.001147773,0.0001365636,0.0000133836,0.00003143769,0.002088682],"genre_scores_gemma":[0.9987744,0.00009970053,0.0001041898,0.00005989307,0.0004528374,0.000002276357,0.00003226337,0.00001547261,0.0004589414],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009293715,"threshold_uncertainty_score":0.6036146,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134921437","doi":"10.1186/1475-2859-11-63","title":"Overexpression of an exotic thermotolerant β-glucosidase in trichoderma reesei and its significant increase in cellulolytic activity and saccharification of barley straw","year":2012,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Trichoderma reesei; Cellulase; Cellobiose; Hydrolysis; Chemistry; Beta-glucosidase; Incubation; Fermentation; Xylanase; Food science; Cellulose; Biochemistry; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.01624400445090324,"gpt":0.2052532871765941,"spread":0.1890092827256908,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001722923,0.0001310428,0.0001956742,0.0001322057,0.00002035523,0.00001107644,0.00005494306,0.000115042,0.00002669278],"category_scores_gemma":[0.0000161471,0.0001195817,0.00001725764,0.0001345978,0.00004634186,0.0003571664,0.00002554388,0.0001395773,7.818152e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003622855,"about_ca_system_score_gemma":0.00001374659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003028477,"about_ca_topic_score_gemma":0.00001895789,"domain_scores_codex":[0.9992902,0.00007681375,0.0002388469,0.0001548359,0.00007473763,0.0001645389],"domain_scores_gemma":[0.9996752,0.00003429718,0.00006881815,0.0001260557,0.0000219966,0.00007362911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001032454,0.0001483537,0.004580379,0.0005412843,0.000002579849,7.164553e-7,0.001399312,0.00002854738,0.9926044,0.000004049158,0.000008125527,0.0005790529],"study_design_scores_gemma":[0.0005104861,0.00003866361,0.07590348,0.00005710433,0.000006950856,0.00000209323,0.0002101082,0.001163439,0.9219467,0.000005473183,0.00003633071,0.0001191782],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989159,0.0006131,0.00003215378,0.000009544805,0.0000929754,0.0002441149,0.00003106273,0.00001911913,0.00004200069],"genre_scores_gemma":[0.9996777,0.0001956828,0.00005628571,0.000002531897,0.00002688529,0.000002680076,0.00001132444,0.00001176392,0.00001517862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0713231,"threshold_uncertainty_score":0.4876398,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114458369","doi":"10.1186/1475-2859-12-97","title":"High-yield production of functional soluble single-domain antibodies in the cytoplasm of Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Escherichia coli; Yield (engineering); Cytoplasm; Antibody; Chemistry; Biology; Microbiology; Biochemistry; Computational biology; Immunology; Gene; Materials science","retraction":null,"screen_n_in":null,"score":{"opus":0.02956871334821113,"gpt":0.240968385396659,"spread":0.2113996720484478,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001802758,0.0001518583,0.0003352464,0.0001041654,0.00008079837,0.00001957435,0.0001221861,0.00008958584,0.0005084101],"category_scores_gemma":[0.00009071232,0.0001002747,0.00009771228,0.0002645788,0.0003402248,0.0001171937,0.00006090293,0.0002447361,0.00003170848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000033069,"about_ca_system_score_gemma":0.0001000454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001991525,"about_ca_topic_score_gemma":0.0002004371,"domain_scores_codex":[0.9987722,0.00007201044,0.0003648677,0.0002006774,0.0003311948,0.0002590178],"domain_scores_gemma":[0.999245,0.0001571143,0.0001179216,0.0002021197,0.0002354887,0.00004229766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003491109,0.0003882291,0.02165495,0.000316753,0.0000311935,0.000003253281,0.001281194,0.00001490903,0.9622312,0.0002332094,0.0133599,0.0001360651],"study_design_scores_gemma":[0.0004209869,0.0004272361,0.09377646,0.00009107863,0.00002159122,0.00001378799,0.001179102,0.000003005989,0.8944589,0.000318638,0.009169193,0.0001199992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955779,0.0002443098,0.00002758273,0.001760824,0.0006203578,0.0004525181,0.00001781027,0.00001167989,0.001287011],"genre_scores_gemma":[0.9943172,0.00006974934,0.00067766,0.00008453726,0.0002523203,0.00001375201,0.00005106331,0.00001230603,0.004521355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07212151,"threshold_uncertainty_score":0.5566734,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2257409067","doi":"10.1186/s12934-016-0417-7","title":"Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain","year":2016,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Ionic liquids properties and applications","field":"Chemical Engineering","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; University of Toronto","funders":"National Human Genome Research Institute; RIKEN; Great Lakes Bioenergy Research Center; National Institute of General Medical Sciences; Canadian Institute for Advanced Research; U.S. Department of Energy; Office of Science; National Institutes of Health; National Science Foundation","keywords":"Biochemistry; Chemistry; Saccharomyces cerevisiae; Fermentation; Xylose; Valinomycin; Efflux; Biology; Yeast; Membrane potential","retraction":null,"screen_n_in":null,"score":{"opus":0.008623790007493283,"gpt":0.1963612060054255,"spread":0.1877374159979323,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009482435,0.0001478605,0.0002525189,0.00006354974,0.00003132483,0.00001236152,0.0001243184,0.00008664766,0.0001205316],"category_scores_gemma":[0.00003584396,0.0001147172,0.00005503227,0.0001048737,0.00004838694,0.0001255282,0.00008298149,0.00008700828,0.000001823922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005500437,"about_ca_system_score_gemma":0.00003518059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004430315,"about_ca_topic_score_gemma":0.000006874411,"domain_scores_codex":[0.9990746,0.00001171872,0.000409438,0.0001887591,0.0001009041,0.0002146215],"domain_scores_gemma":[0.9995999,0.0000818532,0.00009354948,0.0001336869,0.00005122778,0.00003977207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001804457,0.00003759674,0.00008131014,0.0001797697,0.00001152151,2.973431e-7,0.000472014,0.0001531079,0.9898493,0.009001742,0.000007886968,0.0001873987],"study_design_scores_gemma":[0.0004528492,0.00003813127,0.0002012706,0.0001658793,0.000008911245,0.000001592178,0.0000731929,0.0007993859,0.9977166,0.0001265346,0.0002690927,0.0001465268],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942586,0.0001622136,0.004993722,0.0001187001,0.00007438147,0.000147639,0.0001167555,0.00002954213,0.00009843376],"genre_scores_gemma":[0.9989643,0.00004913498,0.0007445251,0.000007157542,0.00006660522,0.0000122241,0.000008505243,0.00001803016,0.0001295254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008875208,"threshold_uncertainty_score":0.4678032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2190018413","doi":"10.1186/s12934-015-0370-x","title":"A novel consortium of Lactobacillus rhamnosus and Streptococcus thermophilus for increased access to functional fermented foods","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Yoba for Life Foundation; Newfoundland and Labrador; Western University; Vrije Universiteit Amsterdam; Helsingin Yliopisto","keywords":"Lactobacillus rhamnosus; Streptococcus thermophilus; Probiotic; Lactobacillus; Biology; Microbiology; Food science; Fermentation; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.06059667206085802,"gpt":0.2473908570043835,"spread":0.1867941849435255,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001138461,0.0001786845,0.0002344012,0.00002040138,0.0001127725,0.000131206,0.0001961293,0.0001076254,0.00003944897],"category_scores_gemma":[0.0000602446,0.0000821857,0.00007163565,0.0001847564,0.00009356088,0.0001507636,0.0001644101,0.00006791033,0.000002196988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003881627,"about_ca_system_score_gemma":0.00003941108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003009761,"about_ca_topic_score_gemma":0.0003083225,"domain_scores_codex":[0.9990504,0.00002349453,0.0002481758,0.0002873747,0.0001287508,0.0002617464],"domain_scores_gemma":[0.9993148,0.0001002296,0.0001100772,0.00006152021,0.0002179094,0.0001954595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004067524,0.000381295,0.004492345,0.00001952358,0.00002562903,4.386125e-7,0.0001210366,0.000003364682,0.9922234,0.0001211193,0.001341661,0.0008634603],"study_design_scores_gemma":[0.006066756,0.002707256,0.1703345,0.00004975302,0.00008428343,0.000009471999,0.0008952319,0.000029138,0.7662916,0.0004865245,0.05229447,0.0007510318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969647,0.00007478151,0.0002364339,0.0003401935,0.0003075857,0.0006536196,0.001055074,0.00003409528,0.0003335175],"genre_scores_gemma":[0.9990941,0.000005258077,0.0001535286,0.0001820539,0.0001425819,0.00002613977,0.0002000862,0.000002261919,0.0001939827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2259318,"threshold_uncertainty_score":0.3351436,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2586375435","doi":"10.1186/s12934-017-0633-9","title":"Current lipid extraction methods are significantly enhanced adding a water treatment step in Chlorella protothecoides","year":2017,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Algal biology and biofuel production","field":"Energy","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Rimouski; Polytechnique Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Extraction (chemistry); Biodiesel; Acetone; Chloroform; Chromatography; Chemistry; Solvent; Dichloromethane; Biodiesel production; Methanol; Biochemistry; Organic chemistry; Catalysis","retraction":null,"screen_n_in":null,"score":{"opus":0.03429970587467285,"gpt":0.3200296144812819,"spread":0.285729908606609,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002144165,0.0002841226,0.0003163922,0.0000799662,0.000478823,0.0001276281,0.0001987147,0.00020684,0.0002596416],"category_scores_gemma":[0.00004129213,0.0001920491,0.0001035348,0.00003780766,0.0001522634,0.0003388935,0.00006173099,0.000222864,0.0001047471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002229573,"about_ca_system_score_gemma":0.00002703122,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001154846,"about_ca_topic_score_gemma":0.001495809,"domain_scores_codex":[0.9985376,0.0001987712,0.0003047396,0.0004979622,0.00006411626,0.0003968345],"domain_scores_gemma":[0.9991954,0.00003832777,0.0002348632,0.000421145,0.00006041915,0.00004983832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002497738,0.0001513444,0.001249161,0.00004988908,0.00002155942,0.000002946091,0.0009364951,0.0000137271,0.9315021,0.00002252546,0.00008791171,0.06571256],"study_design_scores_gemma":[0.0004662657,0.0001296954,0.00244811,0.00002766825,0.00001835388,0.000002153434,0.0002692497,0.000002405009,0.8251058,0.00008556737,0.1712216,0.0002231407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943327,0.0003300296,0.0004884458,0.0002262073,0.002923124,0.0007393688,0.00002295763,0.0000862387,0.000850924],"genre_scores_gemma":[0.9969248,0.0002695183,0.0009756043,0.00001569752,0.0008065262,0.000126934,0.00006793497,0.00002422516,0.0007887391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1711336,"threshold_uncertainty_score":0.7831536,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2537889934","doi":"10.1186/s12934-016-0576-6","title":"BcsZ inhibits biofilm phenotypes and promotes virulence by blocking cellulose production in Salmonella enterica serovar Typhimurium","year":2016,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Luonnontieteiden ja Tekniikan Tutkimuksen Toimikunta; China Scholarship Council; Vetenskapsrådet; Karolinska Institutet","keywords":"Salmonella enterica; Biofilm; Virulence; Microbiology; Salmonella; Serotype; Biology; Phenotype; Cellulose; Enterobacteriaceae; Bacteria; Escherichia coli; Gene; Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.00841363393815154,"gpt":0.1728973207107211,"spread":0.1644836867725695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001204145,0.0002143157,0.0001996747,0.00001950306,0.0001195432,0.00008184823,0.0001567432,0.0001200004,0.0001921505],"category_scores_gemma":[0.00003117124,0.00008254228,0.00003838393,0.0001945174,0.00009878435,0.0002062543,0.00009180599,0.0001017517,0.00004264399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003078526,"about_ca_system_score_gemma":0.000009634525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007268395,"about_ca_topic_score_gemma":0.000370339,"domain_scores_codex":[0.998774,0.00006232607,0.0002361107,0.0004521655,0.0001102136,0.0003652067],"domain_scores_gemma":[0.9996153,0.000105181,0.0001037978,0.00005969613,0.00003622867,0.00007983958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004600815,0.00007069908,0.007121688,0.00001909341,0.000003730738,0.000002472606,0.0002200151,1.074843e-7,0.9812711,0.000003792636,0.001293079,0.009948204],"study_design_scores_gemma":[0.0001212332,0.0001172138,0.003765648,0.00006989801,0.000006239855,0.00000619967,0.00005395888,0.000001320548,0.974069,0.00006416386,0.02148131,0.0002438195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978095,0.0006473178,0.000002298015,0.0006791772,0.0003110307,0.000214337,0.0001611784,0.0000561325,0.0001189746],"genre_scores_gemma":[0.9973923,0.0004724525,0.00005388294,0.00005346384,0.0002018714,0.000004952505,0.00003854324,0.000002512644,0.001780003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02018823,"threshold_uncertainty_score":0.3365977,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115502449","doi":"10.1186/1475-2859-12-62","title":"Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Biochemical and biochemical processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Office of Science; U.S. Department of Energy","keywords":"Biochemistry; Escherichia coli; Bioproduction; Metabolic engineering; Biology; Biosynthesis; Anthranilic acid; Yeast; Chemistry; Enzyme; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.005149299190158298,"gpt":0.1935505949398403,"spread":0.188401295749682,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003259441,0.0001757115,0.0001944778,0.00002366371,0.00002940963,0.00002032692,0.0001767193,0.0002257916,0.0001147319],"category_scores_gemma":[0.00007495312,0.000152151,0.00006175069,0.0001404416,0.0001773437,0.00001032077,0.0001005754,0.0001146668,0.00001678759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001223119,"about_ca_system_score_gemma":0.0000407275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005852632,"about_ca_topic_score_gemma":0.00004651392,"domain_scores_codex":[0.9990492,0.00002237059,0.0002708804,0.0003638788,0.00007822255,0.0002154141],"domain_scores_gemma":[0.9995269,0.00001064161,0.00009110267,0.0002056264,0.0001109899,0.00005477409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006559858,0.0001550047,0.002844885,0.00005987042,0.00001174474,2.605446e-7,0.00007647301,0.000002771617,0.9933048,0.000001173716,0.00331151,0.0001658605],"study_design_scores_gemma":[0.0002724488,0.00007821539,0.001924325,0.00001998857,0.000007787587,4.262936e-7,0.00007828372,0.000003090076,0.9931978,0.0001563105,0.004067617,0.0001937102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974998,0.001643774,0.00002564124,0.0001508713,0.0002367378,0.0001932944,0.0000305344,0.00001302739,0.0002063584],"genre_scores_gemma":[0.9984113,0.0002583488,0.0004391913,0.00007960114,0.0002232894,0.0000127156,0.0002442583,0.00001634853,0.0003149349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001385425,"threshold_uncertainty_score":0.620454,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151653800","doi":"10.1186/1475-2859-9-69","title":"Engineering the cell surface display of cohesins for assembly of cellulosome-inspired enzyme complexes on Lactococcus lactis","year":2010,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":72,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Cellulosome; Lactococcus lactis; Enzyme; Chemistry; Biochemistry; Biology; Cellulase; Bacteria; Genetics; Lactic acid","retraction":null,"screen_n_in":null,"score":{"opus":0.009128141013926741,"gpt":0.1965609683333983,"spread":0.1874328273194716,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001074935,0.0002290852,0.0002749393,0.00005725195,0.00007750688,0.0000283615,0.0002386542,0.0001628341,0.00006855329],"category_scores_gemma":[0.00001938548,0.0001788741,0.0001329506,0.0001367593,0.00009179781,0.00009249711,0.00003275667,0.0002708929,0.00001378754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000277326,"about_ca_system_score_gemma":0.00002251575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005620444,"about_ca_topic_score_gemma":0.00002174252,"domain_scores_codex":[0.9991234,0.00001577971,0.0002943143,0.0001938161,0.0001241858,0.0002484827],"domain_scores_gemma":[0.9992837,0.0001641211,0.000100938,0.0003149841,0.00008322082,0.0000530263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004746638,0.00006619579,0.0001642311,0.0006531081,0.00001843591,2.66259e-7,0.0004122685,0.001728331,0.9936744,0.00005795238,0.003145141,0.00003221962],"study_design_scores_gemma":[0.0004034079,0.00008035432,0.0005210388,0.00001481848,0.00002253541,7.43544e-7,0.00008201879,0.0005891481,0.9237319,0.000003210431,0.07436753,0.0001833457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960241,0.00009594348,0.0006585562,0.0000750532,0.001884954,0.0004656378,0.0002895376,0.0001141594,0.0003920094],"genre_scores_gemma":[0.9986323,0.00002570537,0.0007433188,0.00001255553,0.000159085,0.00000534043,0.00003905107,0.00004061441,0.0003420213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07122239,"threshold_uncertainty_score":0.7294275,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164101390","doi":"10.1186/1475-2859-11-13","title":"Exploiting the Campylobacter jejuni protein glycosylation system for glycoengineering vaccines and diagnostic tools directed against brucellosis","year":2012,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Alberta Glycomics Centre; Fondation pour la Recherche Médicale; University of Alberta","keywords":"Glycoprotein; Campylobacter jejuni; Microbiology; Glycosylation; Yersinia enterocolitica; Brucella; Biology; Virulence; Immune system; Brucella melitensis; Brucellosis; Virology; Bacteria; Biochemistry; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.04761822878119744,"gpt":0.2681454600368655,"spread":0.220527231255668,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004189555,0.0004948684,0.0005425062,0.00008869589,0.0004521789,0.00016517,0.0002174625,0.0002387129,0.00002995537],"category_scores_gemma":[0.001185664,0.0003776639,0.0001630911,0.0001692768,0.00006916608,0.0004764524,0.000154564,0.0002134883,0.00004164722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003275735,"about_ca_system_score_gemma":0.00002551508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002975372,"about_ca_topic_score_gemma":0.00005119176,"domain_scores_codex":[0.9977217,0.0002691038,0.0006194305,0.0004554084,0.0001193966,0.0008150027],"domain_scores_gemma":[0.9952572,0.003752737,0.0002878738,0.0004187826,0.0001247989,0.0001585995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004089581,0.0003369248,0.06687914,0.001365571,0.0002711065,0.00001929149,0.003870998,0.0000952331,0.9210759,0.0003307976,0.002456563,0.00288956],"study_design_scores_gemma":[0.004134669,0.001044869,0.1319886,0.001207668,0.0006883528,0.0001578485,0.003291814,0.0005179229,0.7785847,0.00004977172,0.07608583,0.002247925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927237,0.002271684,0.0006140622,0.0002293215,0.001144537,0.002120067,0.0002367857,0.0004675571,0.0001922525],"genre_scores_gemma":[0.9961406,0.0001323606,0.001584378,0.0000698601,0.0008334615,0.0008323254,0.0002067562,0.00009850176,0.0001017586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1424911,"threshold_uncertainty_score":0.9998676,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132898684","doi":"10.1186/s12934-014-0144-x","title":"Genetic, physiological and biochemical characterization of Bacillussp. strain RMB7 exhibiting plant growth promoting and broad spectrum antifungal activities","year":2014,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"Surfactin; Biology; 16S ribosomal RNA; Rhizobacteria; Rhizosphere; Biofertilizer; Microbiology; Bacteria; Bacillus amyloliquefaciens; Strain (injury); Lipopeptide; Bacillus (shape); Population; Inoculation; Food science; Botany; Bacillus subtilis; Fermentation; Horticulture","retraction":null,"screen_n_in":null,"score":{"opus":0.00974629266380105,"gpt":0.1764163997366115,"spread":0.1666701070728105,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008659008,0.0001630193,0.0002274865,0.0000145823,0.0002150944,0.00009346607,0.00008967999,0.0001038104,0.00007409467],"category_scores_gemma":[0.00004102533,0.00007776563,0.00003952771,0.00007338859,0.0001602666,0.0001511951,0.0001087191,0.0001576558,0.000001330128],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001064195,"about_ca_system_score_gemma":0.000004931077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001770389,"about_ca_topic_score_gemma":0.00003663647,"domain_scores_codex":[0.9991523,0.00009434037,0.0002205979,0.0002440174,0.000065204,0.0002235349],"domain_scores_gemma":[0.999611,0.0001270621,0.0001440924,0.00003670466,0.0000283097,0.00005279039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002887376,0.00005542581,0.004181863,0.00003858067,0.000006231419,6.453347e-7,0.0002201014,4.919468e-8,0.9938025,0.00001852657,0.00002776354,0.001619438],"study_design_scores_gemma":[0.00009076732,0.0001673338,0.2434856,0.00003471845,0.000007086523,0.00002127453,0.0001660847,0.00002519247,0.7552553,0.00003021576,0.0005748724,0.000141513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989403,0.00004170838,0.00001492523,0.00007702208,0.00008877752,0.0001062218,0.0006379074,0.0000308943,0.00006217432],"genre_scores_gemma":[0.9992739,0.0001045312,0.00008410295,0.00002590698,0.0001753065,0.000001765026,0.0003011265,0.000001587915,0.0000317754],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2393038,"threshold_uncertainty_score":0.317119,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2936789044","doi":"10.1186/s12934-019-1111-3","title":"Engineering metabolite-responsive transcriptional factors to sense small molecules in eukaryotes: current state and perspectives","year":2019,"lang":"en","type":"review","venue":"Microbial Cell Factories","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of Agriculture","funders":"Chinese Academy of Agricultural Sciences; Agricultural Science and Technology Innovation Program; Directorate for Engineering; National Science Foundation","keywords":"Synthetic biology; Biomanufacturing; Computational biology; Biology; Biochemical engineering; Biotechnology; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.03568521291902533,"gpt":0.2794112523010129,"spread":0.2437260393819876,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006441358,0.0005864599,0.0008389619,0.000236167,0.00006433106,0.00009865711,0.0001555705,0.0002161913,0.00002957378],"category_scores_gemma":[0.00007182705,0.0005122363,0.0003810429,0.0001665606,0.00005465557,0.000008148296,0.0001583787,0.0002939012,0.0000156976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006602115,"about_ca_system_score_gemma":0.0002445085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003181435,"about_ca_topic_score_gemma":0.0000301483,"domain_scores_codex":[0.9981997,0.0001486835,0.0004065222,0.0007531577,0.0001054665,0.0003864878],"domain_scores_gemma":[0.9992655,0.00005276674,0.0001241939,0.0002935568,0.00009051058,0.0001734848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007471748,0.001084148,0.000531727,0.0381506,0.001140638,0.00007273932,0.01041907,0.001844288,0.8010958,0.0004093657,0.003450134,0.1410543],"study_design_scores_gemma":[0.0002664991,0.0001470843,0.0003054581,0.0005675129,0.0001559531,0.000008804131,0.0001205996,0.000001402369,0.007808712,0.000006861243,0.9899218,0.0006892972],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.07086188,0.9261552,0.0002907219,0.000007043336,0.0007567514,0.0006559937,0.001236192,0.00001532399,0.00002085491],"genre_scores_gemma":[0.01026304,0.9883015,0.0001619141,0.00001973934,0.0001891766,0.00005116952,0.0005292972,0.00008143878,0.0004027751],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9864717,"threshold_uncertainty_score":0.9997329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136243424","doi":"10.1186/1475-2859-10-33","title":"Molecular and process design for rotavirus-like particle production in Saccharomyces cerevisiae","year":2011,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; National Institutes of Health; Fondation Chalmers; Knut och Alice Wallenbergs Stiftelse","keywords":"Saccharomyces cerevisiae; Virus-like particle; Plasmid; Recombinant DNA; Rotavirus; Yeast; Biology; Gene; Protein biosynthesis; Microbiology; Virus; Chemistry; Biochemistry; Virology","retraction":null,"screen_n_in":null,"score":{"opus":0.05845468705020602,"gpt":0.2988226053819376,"spread":0.2403679183317315,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002056952,0.0001198307,0.0002537349,0.00004807395,0.00005156255,0.00001415329,0.00005603566,0.00006191363,0.00003935979],"category_scores_gemma":[0.000187318,0.0001037651,0.00003795047,0.00008692178,0.0001132708,0.0001202791,0.00002500962,0.0001140626,0.000006175822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002897046,"about_ca_system_score_gemma":0.00004277629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009124313,"about_ca_topic_score_gemma":0.00003472102,"domain_scores_codex":[0.9989986,0.00008255804,0.0002133523,0.0002801375,0.0000621845,0.0003631499],"domain_scores_gemma":[0.9996472,0.00001330328,0.00004329825,0.0001180666,0.00007429878,0.0001038178],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001363831,0.0001471879,0.05003828,0.0003357663,0.00001658721,0.00002128393,0.001237624,0.000005953126,0.9446841,0.00001322283,0.0008486549,0.001287542],"study_design_scores_gemma":[0.001273786,0.001107062,0.0156324,0.00007875402,0.00002458204,0.00003662664,0.0003408465,0.00003670354,0.9796309,0.0002912804,0.001417381,0.0001296686],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971679,0.0004808278,0.001073292,0.0002822321,0.0001165344,0.0007957769,0.000009250001,0.00002694218,0.00004724647],"genre_scores_gemma":[0.9969832,0.000110367,0.002489971,0.0001196025,0.00006577828,0.00007597281,0.00001226507,0.00001662717,0.0001262478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03494684,"threshold_uncertainty_score":0.4231419,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068491029","doi":"10.1186/1475-2859-9-45","title":"MARINE-EXPRESS: taking advantage of high throughput cloning and expression strategies for the post-genomic analysis of marine organisms","year":2010,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Réseau Provincial de Recherche en Adaptation-Réadaptation; Agence Nationale de la Recherche","keywords":"Cloning (programming); Biology; Computational biology; Gene; Genome; Function (biology); Genetics; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.005850369997514702,"gpt":0.2266113289668051,"spread":0.2207609589692904,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008743701,0.0001314865,0.0002026063,0.00004305251,0.0001085532,0.00002948039,0.0001412958,0.0001147163,0.00005448959],"category_scores_gemma":[0.00003135285,0.00009454739,0.00009556568,0.0000844942,0.0001623666,0.000007159362,0.0002641038,0.00007974613,1.345042e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003177504,"about_ca_system_score_gemma":0.00004465015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002973741,"about_ca_topic_score_gemma":0.0002962025,"domain_scores_codex":[0.9992977,0.00001554434,0.0002193469,0.0002781456,0.00005722995,0.0001319842],"domain_scores_gemma":[0.9992732,0.00002526954,0.0002369089,0.0002911072,0.0001522429,0.00002121646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001471551,0.00002918256,0.006916517,0.00004911817,0.0001349728,1.323932e-7,0.0003487267,0.0001614774,0.9917148,0.0001254962,0.0000267971,0.0003456663],"study_design_scores_gemma":[0.0002078636,0.0001852841,0.03302519,0.000003074944,0.0002219317,0.000001521751,0.0007671603,0.00001321721,0.9627276,0.00005982603,0.002677746,0.0001095673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996351,0.0002147319,0.0028214,0.00002218647,0.0002523164,0.000165799,0.00007606335,0.000004690361,0.00009182582],"genre_scores_gemma":[0.9951325,0.0002253185,0.004051464,0.00001169763,0.0001672278,0.000004389313,0.0002089482,0.00001754761,0.0001808844],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02898714,"threshold_uncertainty_score":0.3855531,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166723676","doi":"10.1186/1475-2859-11-87","title":"Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13 C metabolic flux analysis","year":2012,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Glyoxylate cycle; Glucose-6-phosphate isomerase; Escherichia coli; Pentose phosphate pathway; Biology; Metabolic flux analysis; Gene expression; Flux (metallurgy); Biochemistry; Metabolism; Metabolic pathway; Gene; Gene expression profiling; Metabolic engineering; Chemistry; Glycolysis; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.006929948590389149,"gpt":0.2091717638958238,"spread":0.2022418153054347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001311295,0.0001834957,0.0002633685,0.0001137939,0.00008071578,0.00002221741,0.00009968483,0.0001099075,0.000002795204],"category_scores_gemma":[0.0001875743,0.0001402346,0.00007611527,0.0004125961,0.00005996624,0.00000876337,0.00007708769,0.0001100841,3.117878e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001561,"about_ca_system_score_gemma":0.00002920818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005659249,"about_ca_topic_score_gemma":0.00004679028,"domain_scores_codex":[0.9990491,0.0001118028,0.0002152859,0.0002455463,0.00008216018,0.0002960762],"domain_scores_gemma":[0.9995116,0.00001594584,0.00008669582,0.0002403557,0.00005194074,0.00009347463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001445482,0.00004565634,0.004416975,0.00003388753,0.00006434755,7.991171e-8,0.0013704,0.000849667,0.9931058,0.00001740601,0.00003493796,0.00004633623],"study_design_scores_gemma":[0.0001946955,0.00002798241,0.03051163,0.00001510316,0.0001970551,7.738532e-7,0.00008775076,0.00002949216,0.9662177,0.000002131348,0.002565475,0.0001501807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948103,0.00402248,0.0003078815,0.00002975062,0.0005544985,0.0002266445,0.00001855691,0.000008484965,0.00002135984],"genre_scores_gemma":[0.9974595,0.000109226,0.001739077,0.00006953907,0.0004636225,0.000008188326,0.00003916828,0.00001768931,0.00009398981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02688813,"threshold_uncertainty_score":0.5718602,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2803809638","doi":"10.1186/s12934-018-0916-9","title":"Identification, function, and application of 3-ketosteroid Δ1-dehydrogenase isozymes in Mycobacterium neoaurum DSM 1381 for the production of steroidic synthons","year":2018,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Natural Science Foundation of China","keywords":"Ketosteroid; Synthon; Isozyme; Identification (biology); Mycobacterium; Function (biology); Biology; Computational biology; Microbiology; Chemistry; Biochemistry; Enzyme; Genetics; Stereochemistry; Bacteria; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.004907078831975833,"gpt":0.2115430449907704,"spread":0.2066359661587945,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000135322,0.0001433813,0.0001417673,0.00002395548,0.0000953889,0.00001796274,0.0001510464,0.0001423659,0.000005535558],"category_scores_gemma":[0.00007210935,0.0001218844,0.00005560078,0.0001003073,0.0002934436,0.000009708094,0.00006586411,0.00005193776,8.786798e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001104858,"about_ca_system_score_gemma":0.00004057702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001432674,"about_ca_topic_score_gemma":0.00003797959,"domain_scores_codex":[0.9990853,0.00002205804,0.0003436005,0.0003356753,0.000066407,0.0001469687],"domain_scores_gemma":[0.9991107,0.00002530175,0.0002319325,0.0003840692,0.0002204215,0.00002756958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002642151,0.00006734046,0.003055204,0.0002153395,0.00002583667,2.718126e-8,0.0001590884,0.00000242132,0.995109,0.000003335853,0.0008467551,0.000251464],"study_design_scores_gemma":[0.0002662998,0.0001274013,0.002554572,0.00001787658,0.00003988577,0.000004489183,0.0002687626,0.000006286636,0.9910159,0.00003072645,0.00555112,0.0001167121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961404,0.0008329587,0.002143396,0.0001079139,0.0003242063,0.0003279083,0.00009917864,0.000006760697,0.00001729829],"genre_scores_gemma":[0.998755,0.00009899557,0.00005462751,0.00002163095,0.0003909517,0.00004516828,0.0001620634,0.00001435463,0.0004572451],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004704365,"threshold_uncertainty_score":0.4970302,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148659870","doi":"10.1186/1475-2859-10-76","title":"In silico characterization of microbial electrosynthesis for metabolic engineering of biochemicals","year":2011,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Ontario Ministry of Research and Innovation; U.S. Department of Energy","keywords":"Biochemical engineering; Electrosynthesis; Metabolic engineering; Flux balance analysis; Redox; Context (archaeology); Microbial metabolism; Fermentation; Bioelectrochemistry; Microbial fuel cell; Bioprocess; Biochemistry; Biotechnology; Chemistry; Biology; Enzyme; Bacteria; Electrochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.007972117799013197,"gpt":0.1731289449747867,"spread":0.1651568271757735,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001140753,0.0001506404,0.0002768668,0.00006997651,0.00002042807,0.000006539567,0.0001734957,0.0001150327,0.000603218],"category_scores_gemma":[0.00003376013,0.000147063,0.00009173548,0.0002312679,0.00007892891,0.0001559793,0.00005708681,0.00005739734,0.00001034817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004225033,"about_ca_system_score_gemma":0.0000137141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002887892,"about_ca_topic_score_gemma":0.0000414068,"domain_scores_codex":[0.9990534,0.00001873826,0.0003962215,0.0002163944,0.00007838632,0.0002369182],"domain_scores_gemma":[0.999588,0.0000307316,0.000190623,0.0001346518,0.00002164117,0.00003436087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007049334,0.0001206112,0.003364089,0.0000821705,0.00000584367,1.585705e-7,0.0008905792,0.00000419985,0.9952199,0.00001694262,0.0001120515,0.000112975],"study_design_scores_gemma":[0.0002512607,0.00004808335,0.008599885,0.00001132284,0.00001804643,4.569673e-7,0.00001011692,0.00001317987,0.9863433,0.00001317412,0.004546577,0.0001445592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998716,0.00003731368,0.0004948188,0.00001111685,0.0001959123,0.0003002952,0.000130975,0.00001115444,0.0001024408],"genre_scores_gemma":[0.9978863,0.0000746697,0.001800645,0.00002069936,0.00005125587,0.000007999106,0.00005978935,0.00001789131,0.00008076604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008876548,"threshold_uncertainty_score":0.6604815,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3126026012","doi":"10.1186/s12934-021-01509-2","title":"Engineering Escherichia coli for the utilization of ethylene glycol","year":2021,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bioreactor; Petrochemical; Biochemical engineering; Metabolic engineering; Raw material; Pulp and paper industry; Ethylene glycol; Microbial consortium; Fermentation; Commodity chemicals; Assimilation (phonology); Biotechnology; Chemistry; Environmental science; Food science; Organic chemistry; Biology; Bacteria; Microorganism; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.01264731284187696,"gpt":0.2214546216697385,"spread":0.2088073088278615,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007228986,0.0001051176,0.0001088098,0.00001380241,0.00005636538,0.00001762188,0.0000869593,0.00009534982,0.00001536282],"category_scores_gemma":[0.0001170717,0.00008804636,0.00007691229,0.0001083058,0.00002805219,0.000002846982,0.00004029162,0.00005101772,0.000001139746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000706934,"about_ca_system_score_gemma":0.00005511726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001212056,"about_ca_topic_score_gemma":0.000009940125,"domain_scores_codex":[0.9994821,0.00001337759,0.0001464189,0.0001834484,0.0000422058,0.0001324595],"domain_scores_gemma":[0.9995565,0.00001023315,0.00004836119,0.0002101188,0.0001544772,0.00002027874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002888861,0.00002506021,0.00003085834,0.0000845915,0.00002690041,1.258404e-7,0.00006939415,0.000951053,0.9968618,0.00004015623,0.001608692,0.0002725328],"study_design_scores_gemma":[0.0001634674,0.00002869581,0.0002200368,0.000005391924,0.000019648,0.000001635919,0.00003459781,0.0000323038,0.7401496,0.00000140523,0.2592675,0.00007577595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9579167,0.00292352,0.03752123,0.00009236374,0.001202384,0.0002170489,0.00007163313,0.00001686379,0.00003829961],"genre_scores_gemma":[0.9956825,0.0004195844,0.002061019,0.00003404736,0.0004930533,0.00001309814,0.0001505522,0.00002016191,0.001126018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2576588,"threshold_uncertainty_score":0.3590426,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119490944","doi":"10.1186/1475-2859-5-22","title":"Surface display of proteins by gram-negative bacterial autotransporters.","year":2006,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacterial outer membrane; Periplasmic space; Biology; Signal peptide; Cell biology; Chromosomal translocation; Biochemistry; Escherichia coli; Peptide sequence; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.003851415982309198,"gpt":0.1857573040811602,"spread":0.181905888098851,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004594375,0.0002392567,0.0002537457,0.00001644158,0.0001450534,0.0000575765,0.0002149026,0.0001157219,0.004748065],"category_scores_gemma":[0.000004411476,0.0002222348,0.0001248961,0.0001493805,0.0003306956,0.0003401392,0.00007292381,0.0001559676,0.0001712762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001219578,"about_ca_system_score_gemma":0.00001698605,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01149972,"about_ca_topic_score_gemma":0.001341516,"domain_scores_codex":[0.9988169,0.00004144069,0.0003610568,0.0003281563,0.0001231997,0.0003292595],"domain_scores_gemma":[0.9994999,0.00003091534,0.0001828738,0.000207725,0.00001767164,0.0000609654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006306449,0.000203808,0.001293033,0.00001730049,0.000008645619,0.000002351492,0.0004167224,0.00004903361,0.9795404,0.000008939321,0.01833676,0.00005992599],"study_design_scores_gemma":[0.0003704252,0.00007774699,0.02076086,0.0000117456,0.00002048323,0.000002874668,0.00004477151,0.000002240588,0.8792803,0.00002076087,0.09917777,0.0002300073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949632,0.00001771806,0.0005161088,0.00009090695,0.0005762628,0.0003390411,0.0008597433,0.0000500592,0.002586977],"genre_scores_gemma":[0.9931664,0.000008528447,0.001313829,0.0000250151,0.00007699308,0.000005547372,0.0002325245,0.00002646036,0.005144684],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1002601,"threshold_uncertainty_score":0.9961618,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2143226881","doi":"10.1186/1475-2859-9-81","title":"Two-stage, self-cycling process for the production of bacteriophages","year":2010,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Multiplicity of infection; Infectivity; Cycling; Biology; Bacteria; Microbiology; Multiplicity (mathematics); Cell cycle; Fermentation; Chemistry; Food science; Cell; Biochemistry; Mathematics; Virology; Genetics; Virus","retraction":null,"screen_n_in":null,"score":{"opus":0.0103155440770105,"gpt":0.2579077613423639,"spread":0.2475922172653534,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001275505,0.000163963,0.0001516292,0.00002200407,0.0003310583,0.00006509099,0.0002715612,0.00007022603,0.001253121],"category_scores_gemma":[0.00005956055,0.0001202049,0.0001013204,0.0001364862,0.0002056445,0.0003309762,0.0000853136,0.0002313213,0.00004750453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003495541,"about_ca_system_score_gemma":0.00002162686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003491302,"about_ca_topic_score_gemma":0.000891856,"domain_scores_codex":[0.9991172,0.00001689958,0.0002525235,0.0002843309,0.00008401496,0.0002450127],"domain_scores_gemma":[0.999364,0.00009616887,0.0001770782,0.0002786785,0.00004228504,0.00004174305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003389173,0.00009580175,0.000822023,0.0000464669,0.00001235628,2.245098e-7,0.001363917,0.0000751839,0.9962866,0.00001017969,0.0007474326,0.0005059802],"study_design_scores_gemma":[0.0001670471,0.00003732395,0.007283285,0.00000755779,0.00003497846,0.000006208777,0.000295114,0.00001259642,0.9031287,0.00001170985,0.08887558,0.0001398869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954659,0.00001884644,0.0001440888,0.0001950551,0.002813863,0.0005066803,0.00005958161,0.00005768221,0.0007382462],"genre_scores_gemma":[0.9943932,0.00001938496,0.001339868,0.00004364547,0.0002872605,0.00003216842,0.0000145308,0.00002371168,0.003846232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09315784,"threshold_uncertainty_score":0.9996599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970252762","doi":"10.1186/1475-2859-13-s1-s1","title":"Progress in lactic acid bacterial phage research","year":2014,"lang":"en","type":"review","venue":"Microbial Cell Factories","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Science Foundation Ireland; Université Laval","keywords":"Bacteriophage; Lactic acid; Host (biology); Computational biology; Synthetic biology; Biology; Phage therapy; Computer science; Data science; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05304682286258593,"gpt":0.359702785109019,"spread":0.306655962246433,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005295619,0.0006067657,0.001378241,0.0002364062,0.0002848334,0.0003855529,0.0008352739,0.0005688928,0.00886668],"category_scores_gemma":[0.00004790771,0.0005268641,0.000391905,0.0007018448,0.0006003531,0.0003759094,0.0007785137,0.001432537,0.005277338],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000921038,"about_ca_system_score_gemma":0.0001196409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004584286,"about_ca_topic_score_gemma":0.001119605,"domain_scores_codex":[0.9963374,0.0007093119,0.0008057841,0.000895051,0.0002837997,0.000968711],"domain_scores_gemma":[0.99867,0.0001956586,0.000303232,0.0006366606,0.00002722631,0.0001671618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007012065,0.0006396059,0.00007485079,0.008065639,0.00006005589,0.0001038108,0.001014789,1.628196e-7,0.03510588,0.00001084409,0.04081182,0.9140424],"study_design_scores_gemma":[0.0002167724,0.00006936431,0.0000684035,0.00127926,0.000073438,0.00003107594,0.00002128097,1.048174e-7,0.001826139,0.00000334837,0.9959157,0.0004950957],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00210091,0.9888512,0.000005732442,0.00003048263,0.003431114,0.001150297,0.0002044415,0.00007713775,0.004148646],"genre_scores_gemma":[0.003723074,0.9894345,0.0002267188,0.00002161625,0.001041626,0.000150727,0.0003933065,0.00013981,0.004868613],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9551039,"threshold_uncertainty_score":0.9997183,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113770629","doi":"10.1186/1475-2859-10-69","title":"A cell factory of Bacillus subtilis engineered for the simple bioconversion of myo-inositol to scyllo-inositol, a potential therapeutic agent for Alzheimer's disease","year":2011,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Phytase and its Applications","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Advanced Low Carbon Technology Research and Development Program; Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Inositol; Bioconversion; Bacillus subtilis; Biology; Biochemistry; Chemistry; Receptor; Bacteria; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.03683859139050081,"gpt":0.217901916789693,"spread":0.1810633253991922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006032268,0.0001742254,0.000208105,0.00001766099,0.0002173783,0.00002041435,0.0003493097,0.0000711665,0.0001385133],"category_scores_gemma":[0.000008239122,0.0000731874,0.0002460559,0.0001514334,0.00008114835,0.00007508425,0.00006643905,0.00004583828,0.000005011045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001463231,"about_ca_system_score_gemma":0.00002521017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003849375,"about_ca_topic_score_gemma":0.00004783356,"domain_scores_codex":[0.9991105,0.00002401693,0.0002558239,0.0002484352,0.000105756,0.0002554487],"domain_scores_gemma":[0.9993116,0.0001723659,0.0001294776,0.0001300689,0.00015285,0.0001035832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002778105,0.0002103505,0.0003500367,0.00004464712,0.00003885486,1.640973e-7,0.0005794898,0.000005149721,0.991551,0.0000328149,0.004914316,0.001995357],"study_design_scores_gemma":[0.0002662418,0.0003346687,0.01213773,0.00000717858,0.0001873881,1.435786e-7,0.0004696342,0.00003431797,0.929862,0.00008884601,0.05644044,0.000171434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992678,0.001101738,0.001054813,0.0002565829,0.0002571537,0.001589614,0.003010185,0.00002855713,0.00002337735],"genre_scores_gemma":[0.9991848,0.00004050554,0.0001807595,0.0001039492,0.0001246215,0.00009539451,0.0002140255,0.000003289533,0.00005269235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06168903,"threshold_uncertainty_score":0.2984495,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1557017823","doi":"10.1186/1475-2859-5-27","title":"Identifying conditions for inducible protein production in E. coli: combining a fed-batch and multiple induction approach","year":2006,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute; Polytechnique Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Bioreactor; Green fluorescent protein; Yield (engineering); Recombinant DNA; Biology; Substrate (aquarium); Protein biosynthesis; Production (economics); Cell growth; Biological system; Chemistry; Food science; Biochemistry; Cell biology; Gene; Materials science; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.01629272805645134,"gpt":0.2468833502879883,"spread":0.2305906222315369,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007718889,0.000141201,0.0001219913,0.00006702577,0.0002565153,0.00008026253,0.00005362275,0.0001474115,0.000004255464],"category_scores_gemma":[0.00004929103,0.0001484688,0.00004899587,0.0001083684,0.00007330271,0.00001967277,0.00005042917,0.00009050361,0.00000100965],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002666328,"about_ca_system_score_gemma":0.00004632505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003886575,"about_ca_topic_score_gemma":0.0001623024,"domain_scores_codex":[0.9991168,0.00004312217,0.0001971584,0.000383632,0.00005551873,0.0002037288],"domain_scores_gemma":[0.9996552,0.00000574341,0.00008837889,0.0001420875,0.00007395122,0.00003467224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009203074,0.0001759443,0.004328948,0.0001036953,0.000007613789,2.462509e-7,0.0001210822,0.0001937608,0.9910603,0.00003322964,0.003846261,0.00003685294],"study_design_scores_gemma":[0.0007890878,0.000148456,0.003245083,0.00002840517,0.00001023889,0.000004706854,0.0003117028,0.00001923428,0.9914743,0.0004049618,0.003368684,0.0001951719],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975833,0.0002641524,0.0007175725,0.00002761389,0.0004013374,0.0007470388,0.00006042484,0.00002206749,0.00017646],"genre_scores_gemma":[0.9974962,0.00001429501,0.0006270648,0.00001776542,0.0003529633,0.000161944,0.0005745555,0.00002137086,0.0007337744],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001083866,"threshold_uncertainty_score":0.6054381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2258606127","doi":"10.1186/s12934-016-0420-z","title":"Adaptive evolution and metabolic engineering of a cellobiose- and xylose- negative Corynebacterium glutamicum that co-utilizes cellobiose and xylose","year":2016,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of British Columbia","funders":"Korea Carbon Capture and Sequestration R and D Center; National Research Council of Science and Technology; National Research Foundation of Korea; Korea Institute of Science and Technology; Ministry of Science, ICT and Future Planning; National Research Foundation","keywords":"Cellobiose; Xylose; Corynebacterium glutamicum; Biochemistry; Metabolic engineering; Fermentation; Lignocellulosic biomass; Pentose; Chemistry; Ruminococcus; Cellulose; Biology; Enzyme; Gene; Cellulase","retraction":null,"screen_n_in":null,"score":{"opus":0.006170699312228372,"gpt":0.1856940407685517,"spread":0.1795233414563233,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000117309,0.0003321271,0.0003584968,0.00009302395,0.00008164886,0.00003517824,0.0000883413,0.0002136632,0.000007707505],"category_scores_gemma":[0.00005933844,0.0002622441,0.00006017787,0.00008732967,0.000312933,0.0000286055,0.0001261287,0.00009717252,0.000001594158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002002045,"about_ca_system_score_gemma":0.00003416821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008697337,"about_ca_topic_score_gemma":0.00001749194,"domain_scores_codex":[0.9988052,0.00005279309,0.0002462572,0.0005117639,0.00007967621,0.000304321],"domain_scores_gemma":[0.9994144,0.00002228869,0.0001360935,0.0002248746,0.00009389079,0.0001084677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001601347,0.00003218048,0.001124533,0.0000999281,0.00005973994,8.205433e-7,0.0002335783,0.000003514424,0.997486,0.00006831531,0.000140125,0.0005911413],"study_design_scores_gemma":[0.0007988173,0.0002005157,0.008606049,0.00005040103,0.00006403941,0.00002592109,0.0002412343,0.000005988677,0.9797407,0.00001152157,0.009926434,0.0003284236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932301,0.004661092,0.00111274,0.00004218767,0.0002865912,0.0002542263,0.0003327562,0.00003145124,0.00004882291],"genre_scores_gemma":[0.9963284,0.002109556,0.0007834831,0.00001256477,0.0002308877,0.000006792477,0.00003003004,0.00003452634,0.0004637786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01774533,"threshold_uncertainty_score":0.999983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2894990867","doi":"10.1186/s12934-018-1006-8","title":"Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC","year":2018,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Office of Science; Joint Genome Institute; Petroleum Technology Research Centre; U.S. Department of Energy","keywords":"Escherichia coli; Mutant; Biochemistry; Bioproducts; Chemistry; Mutation; Metabolic engineering; Biology; Gene; Biomass (ecology); Food science; Biofuel; Biotechnology","retraction":null,"screen_n_in":null,"score":{"opus":0.006682086270709154,"gpt":0.2147551381207094,"spread":0.2080730518500002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001785977,0.0001369105,0.0001246761,0.00003965203,0.00008632642,0.00003167854,0.00008919603,0.0001261003,0.000007579919],"category_scores_gemma":[0.00004595434,0.0001162978,0.00002745805,0.0001753051,0.000136334,0.00001571293,0.00002617254,0.00007512868,0.00000122351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001794136,"about_ca_system_score_gemma":0.00006331394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002803179,"about_ca_topic_score_gemma":0.0001683142,"domain_scores_codex":[0.9991671,0.00008411634,0.0002116926,0.0002984782,0.00009342165,0.000145225],"domain_scores_gemma":[0.999522,0.000003367436,0.000107291,0.0001785339,0.0001682487,0.00002051568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001943437,0.00006973373,0.0001053586,0.00005283365,0.00001115757,1.409559e-7,0.0006886167,0.00004647416,0.9975957,0.000004064051,0.001191793,0.00003977983],"study_design_scores_gemma":[0.0003298003,0.0002193477,0.001459002,0.00001423283,0.0000151375,0.000004459567,0.0001420452,0.000006437686,0.9944373,0.00001085224,0.003231271,0.0001301089],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977723,0.0006656722,0.000637277,0.0001398355,0.0004108314,0.0002366054,0.0001124335,0.00000918164,0.000015851],"genre_scores_gemma":[0.9986169,0.0001149793,0.0002225783,0.00007872494,0.0006325087,0.000008705389,0.0001756371,0.00001289028,0.0001371215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0031584,"threshold_uncertainty_score":0.4742486,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2993109130","doi":"10.1186/s12934-019-1260-4","title":"Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)","year":2019,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Science Foundation Ireland; Society of the Friendly Sons of St. Patrick for the Relief of Emigrants from Ireland","keywords":"Biology; Pichia pastoris; Genetic diversity; Yarrowia; Meiosis; Genetics; Homologous recombination; Ploidy; Yeast; Recombination; Genome; Saccharomyces cerevisiae; Pichia; Biotechnology; Gene; Population; Recombinant DNA","retraction":null,"screen_n_in":null,"score":{"opus":0.006039790823771228,"gpt":0.1891180639116422,"spread":0.183078273087871,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007741372,0.0001186264,0.0001171623,0.00002822476,0.0002035777,0.00002076968,0.0002474947,0.000132606,0.00003339443],"category_scores_gemma":[0.00001466102,0.0000939099,0.00006321939,0.00007670865,0.0001441972,0.000005103102,0.0009730567,0.0001096237,0.00001129322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001769313,"about_ca_system_score_gemma":0.00003571447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001309203,"about_ca_topic_score_gemma":0.00005910377,"domain_scores_codex":[0.9993221,0.00005404967,0.0001199035,0.0002390345,0.00009079117,0.0001741533],"domain_scores_gemma":[0.9995525,0.000009262302,0.00007115735,0.0002487387,0.00007508924,0.00004325398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003245174,0.00002783139,0.1774088,0.00004390724,0.00001631084,1.155571e-7,0.000229669,0.00001135721,0.8218144,0.000005405167,0.000315303,0.00009455543],"study_design_scores_gemma":[0.0003485552,0.0001192725,0.1147963,0.000009123769,0.00001177613,0.000001399965,0.00007770718,0.00001403349,0.8810017,0.00001908911,0.003489533,0.0001115755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985749,0.0004073619,0.00001801638,0.00004079488,0.0004179177,0.0001997871,0.00004707398,0.000004953937,0.0002892222],"genre_scores_gemma":[0.9975166,0.0001618007,0.00004058702,0.00001470302,0.00006497919,8.00471e-7,0.00002609174,0.00001214276,0.002162254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06261246,"threshold_uncertainty_score":0.3829535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993373169","doi":"10.1186/1475-2859-9-70","title":"Production of functionalized polyhydroxyalkanoates by genetically modified Methylobacterium extorquens strains","year":2010,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke; Institute for Research in Immunology and Cancer; National Research Council Canada; BioPhage Pharma (Canada); Université de Montréal; Biotechnology Research Institute","funders":"Fundação Oswaldo Cruz; Université de Montréal; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Polyhydroxyalkanoates; Metabolic engineering; Methanol; Zymomonas mobilis; Bacteria; Biochemistry; Synthetic biology; Chemistry; Protein engineering; Recombinant DNA; Methanol dehydrogenase; Substrate (aquarium); Organic chemistry; Biology; Fermentation; Gene; Enzyme; Ethanol fuel; Computational biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01486250430095818,"gpt":0.2099139830991593,"spread":0.1950514787982011,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002166745,0.0002384505,0.0003124989,0.00005138308,0.0001933064,0.000106977,0.0002663545,0.0001737825,0.002884779],"category_scores_gemma":[0.00007280202,0.0001882319,0.00009547169,0.0001019181,0.0004150689,0.0001933259,0.00006321553,0.0001714268,0.00004786051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001764456,"about_ca_system_score_gemma":0.00009772407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005082921,"about_ca_topic_score_gemma":0.00009274318,"domain_scores_codex":[0.998557,0.00009614106,0.0003981414,0.0003935142,0.0002207676,0.000334434],"domain_scores_gemma":[0.9991995,0.00004400375,0.0001702714,0.0003470949,0.0001484561,0.00009067441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009281738,0.0001119863,0.0001163007,0.00005081851,0.00001151834,2.756984e-7,0.0003813129,0.000001063082,0.9956691,0.00008772399,0.002375715,0.001101347],"study_design_scores_gemma":[0.000174375,0.00006583313,0.0004260263,0.000007770558,0.00002881016,0.000003895901,0.00005990528,0.000002947088,0.9736421,0.00007203852,0.02529022,0.0002260407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992945,0.001904314,0.0002170376,0.0002937866,0.00336857,0.0001523692,0.0002687141,0.00008283091,0.0007674285],"genre_scores_gemma":[0.9945748,0.00004624251,0.001632426,0.00004493116,0.0002570917,0.00001259768,0.00004108184,0.00002630803,0.003364563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0229145,"threshold_uncertainty_score":0.9980267,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4298005012","doi":"10.1186/s12934-022-01924-z","title":"Development of an industrial yeast strain for efficient production of 2,3-butanediol","year":2022,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Novelis (Canada)","funders":"China Scholarship Council; Agentschap voor Innovatie door Wetenschap en Technologie; Agentschap Innoveren en Ondernemen","keywords":"2,3-Butanediol; Strain (injury); Yeast; 1,4-Butanediol; Production (economics); Biology; Biotechnology; Food science; Microbiology; Chemistry; Biochemistry; Fermentation; Economics","retraction":null,"screen_n_in":null,"score":{"opus":0.01518499104513893,"gpt":0.2169137381363877,"spread":0.2017287470912488,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002094949,0.0001031544,0.0001398752,0.00004633503,0.0001006238,0.000004540131,0.000111622,0.00006218267,0.00001538954],"category_scores_gemma":[0.00003767722,0.0001067681,0.00005205497,0.00009214914,0.0000401644,0.000002339918,0.00006210178,0.00006646932,2.067232e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002139027,"about_ca_system_score_gemma":0.0001282911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007249697,"about_ca_topic_score_gemma":0.000005742851,"domain_scores_codex":[0.9992545,0.00003035537,0.0002552732,0.0002395189,0.00008816867,0.0001322454],"domain_scores_gemma":[0.9996042,0.000001283647,0.0001245376,0.0001662599,0.00007793142,0.00002581238],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002032643,0.0001598389,0.00001396583,0.00005110986,0.00001856082,6.054465e-8,0.0005152075,0.002479868,0.9937392,0.000007326192,0.0003481946,0.002463385],"study_design_scores_gemma":[0.0003099396,0.0002021477,0.00005572055,0.000003573081,0.00001104333,0.000004191843,0.0003496025,0.000004361705,0.8979936,8.673339e-7,0.1009615,0.0001035097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970976,0.00007708315,0.0006939575,0.00001095449,0.001507446,0.0002976393,0.0002963778,0.000008906839,0.00001006756],"genre_scores_gemma":[0.995118,0.000002679803,0.003608698,0.000003152309,0.0004756177,0.00001997836,0.000487394,0.00001462431,0.0002698397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1006133,"threshold_uncertainty_score":0.4353875,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3195987580","doi":"10.1186/s12934-021-01653-9","title":"Efficient conversion of phytosterols into 4-androstene-3,17-dione and its C1,2-dehydrogenized and 9α-hydroxylated derivatives by engineered Mycobacteria","year":2021,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Hubei Technological Innovation Special Fund; Department of Science and Technology, Hubei Provincial People's Government; University of Toronto","keywords":"Mutant; Strain (injury); Ketosteroid; Mycobacterium; Gene; Gene knockout; Phytosterol; Biology; Yield (engineering); Chemistry; Enzyme; Microbiology; Biochemistry; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.003653654122888632,"gpt":0.1873235498235666,"spread":0.183669895700678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00004522498,0.0002528581,0.0002779314,0.00001522453,0.00008511738,0.00003296555,0.0000971824,0.0002558067,0.00004018153],"category_scores_gemma":[0.00003798104,0.0002525428,0.00006358577,0.00008437542,0.0001151902,0.000004921359,0.0002197686,0.0000890962,9.701437e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001270209,"about_ca_system_score_gemma":0.00004725241,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003567947,"about_ca_topic_score_gemma":8.23647e-7,"domain_scores_codex":[0.9989675,0.0000354939,0.0002552252,0.0004397075,0.00008706855,0.0002150027],"domain_scores_gemma":[0.9994251,0.00001876338,0.0001135852,0.0002051488,0.0001321057,0.0001053604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001709752,0.00007177109,0.0004030538,0.0003152306,0.00006685174,0.000004216737,0.00024679,0.000006924781,0.9981552,2.192785e-7,0.0005427145,0.00001600853],"study_design_scores_gemma":[0.001379075,0.0000958333,0.000156973,0.00003839041,0.00003504983,0.00003211249,0.000158073,0.00002174456,0.9950792,0.000001378772,0.002737267,0.0002649633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939758,0.005437073,0.00003965912,0.00003352154,0.0001363215,0.0001029182,0.0002118271,0.00001359827,0.00004923527],"genre_scores_gemma":[0.9980079,0.000390539,0.0001041124,0.00004568886,0.00007681149,0.000003876573,0.0007019165,0.00002004216,0.000649099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005046534,"threshold_uncertainty_score":0.9999927,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3185621099","doi":"10.1186/s12934-021-01640-0","title":"Engineering of Saccharomyces cerevisiae for the accumulation of high amounts of triacylglycerol","year":2021,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Austrian Science Fund; Javna Agencija za Raziskovalno Dejavnost RS; Alberta Water Research Institute","keywords":"Saccharomyces cerevisiae; Yeast; Biochemistry; Metabolic engineering; Fatty acid; Chemistry; Gene; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.0177943114678312,"gpt":0.2489849313039536,"spread":0.2311906198361224,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009546603,0.0001001246,0.0002036122,0.00002526111,0.00002241249,0.000006352741,0.0001028621,0.00008549711,0.0000154679],"category_scores_gemma":[0.000132308,0.00008103644,0.0001105331,0.00009879064,0.00003581831,0.000004358515,0.00003884604,0.00003738445,2.537354e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004878848,"about_ca_system_score_gemma":0.00004123458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005371693,"about_ca_topic_score_gemma":0.000006941007,"domain_scores_codex":[0.9994053,0.0000157147,0.0002708339,0.0001545611,0.00005473215,0.0000988701],"domain_scores_gemma":[0.9993797,0.00002169666,0.0001467404,0.0002306547,0.0002077827,0.00001344876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007929601,0.0000315186,0.000130274,0.0002580394,0.00005165144,4.118341e-8,0.00007984265,0.001822302,0.9968306,0.00005386573,0.0002492925,0.0004132414],"study_design_scores_gemma":[0.0004044221,0.00006086319,0.001207851,0.00001988708,0.00004672254,0.000001516085,0.00003819799,0.00001756199,0.9833471,0.000004803785,0.01477598,0.00007516325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907358,0.001609303,0.006754138,0.0000302781,0.0005506946,0.0001607115,0.0001473467,0.000004667205,0.000007043845],"genre_scores_gemma":[0.9974497,0.000265946,0.001730193,0.000004008902,0.000253539,0.000003990659,0.0001122191,0.0000130267,0.0001673934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01452669,"threshold_uncertainty_score":0.330457,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977710432","doi":"10.1186/1475-2859-11-154","title":"Construction and Characterization of an in-vivo Linear Covalently Closed DNA Vector Production System","year":2012,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Canadian Institutes of Health Research","keywords":"DNA; Biochemical engineering; Computational biology; In vivo; Production (economics); Characterization (materials science); Biology; Biotechnology; Chemistry; Biological system; Biochemistry; Nanotechnology; Engineering; Materials science","retraction":null,"screen_n_in":null,"score":{"opus":0.008228221486104265,"gpt":0.2318369024707981,"spread":0.2236086809846938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005070338,0.00008022883,0.00009251541,0.00003511616,0.00003664064,0.00001025732,0.00003119104,0.00006652589,0.000008938222],"category_scores_gemma":[0.000008258047,0.00007750115,0.00001842632,0.00005343662,0.00006286908,0.00001833037,0.00002219115,0.0000317149,0.000001368876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003077446,"about_ca_system_score_gemma":0.00003934148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001037431,"about_ca_topic_score_gemma":0.00006560772,"domain_scores_codex":[0.9994915,0.00004374151,0.0001175841,0.0001483462,0.00005572682,0.000143106],"domain_scores_gemma":[0.9997308,0.000001743303,0.00006033291,0.0001094979,0.00004817264,0.00004949797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001609573,0.00007137096,0.01949286,0.0001092352,0.00001192697,3.290326e-7,0.0001553067,3.997357e-7,0.9795564,0.000008556974,0.00001523418,0.0004174525],"study_design_scores_gemma":[0.000385793,0.0001343697,0.01450446,0.00001288635,0.000008036593,0.00001010008,0.00009562896,0.000001066923,0.9816033,3.857876e-7,0.003176275,0.00006764712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991152,0.0001328062,0.00003430631,0.000007396965,0.00036238,0.000194001,0.0001088382,0.000007113302,0.00003790906],"genre_scores_gemma":[0.9991121,0.00008642944,0.0001268136,0.00000273252,0.0002914002,0.000007676925,0.000278481,0.000009510479,0.00008485687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004988402,"threshold_uncertainty_score":0.3160405,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135811479","doi":"10.1186/s12934-015-0356-8","title":"High-level secretion of native recombinant human calreticulin in yeast","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"European Social Fund; Canadian Institutes of Health Research; Villum Fonden","keywords":"Calreticulin; Recombinant DNA; Secretion; Yeast; Biology; Microbiology; Virology; Computational biology; Cell biology; Biochemistry; Endoplasmic reticulum; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02111763825676305,"gpt":0.2472545915044139,"spread":0.2261369532476508,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007399985,0.000138958,0.0001745738,0.00004155174,0.00003047868,0.00001372872,0.000117902,0.000118191,0.00002455],"category_scores_gemma":[0.00006144792,0.0001286365,0.00005945305,0.0000717449,0.0001171251,0.000004956046,0.00007978098,0.00007444459,0.000005682669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003109789,"about_ca_system_score_gemma":0.00009883585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004999325,"about_ca_topic_score_gemma":0.0002791567,"domain_scores_codex":[0.9991977,0.00006176386,0.0002331062,0.0002330111,0.00009775101,0.0001766198],"domain_scores_gemma":[0.9995044,0.000004569255,0.00009789733,0.0001765747,0.0001221331,0.00009436484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001211842,0.0001495113,0.00538281,0.0000371828,0.000009975546,0.000005329354,0.0003764483,0.00005731324,0.9905897,0.0002723321,0.002941458,0.00005674589],"study_design_scores_gemma":[0.001367969,0.0002601642,0.004837074,0.00002580491,0.00001181279,0.000001946783,0.0004407862,0.000003382018,0.9878526,0.0002102548,0.004799327,0.0001888469],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981557,0.0002064414,0.0001506135,0.0000315522,0.0003455748,0.0001255976,0.0001552013,0.00000594111,0.000823405],"genre_scores_gemma":[0.998377,0.00003214298,0.0002190373,0.0000198936,0.00007996883,0.00000710845,0.0004302727,0.00001419926,0.000820399],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002737078,"threshold_uncertainty_score":0.5245643,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4241522103","doi":"10.1186/preaccept-6657919731258908","title":"Genetic, physiological and biochemical characterization of Bacillus sp . strain RMB7 exhibiting plant growth promoting and broad spectrum antifungal activities","year":2014,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Surfactin; Biology; Rhizobacteria; 16S ribosomal RNA; Rhizosphere; Microbiology; Bacteria; Bacillus amyloliquefaciens; Bacillus (shape); Lipopeptide; Biofertilizer; Strain (injury); Population; Inoculation; Food science; Bacillus subtilis; Botany; Fermentation; Horticulture","retraction":null,"screen_n_in":null,"score":{"opus":0.01023321988364897,"gpt":0.1781511902108186,"spread":0.1679179703271697,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008455084,0.0001663813,0.0002324147,0.00001483374,0.0002140437,0.00009474112,0.00009112681,0.0001053731,0.00007274826],"category_scores_gemma":[0.00004033329,0.00008014963,0.00004046904,0.00007329653,0.0001612298,0.0001461828,0.0001093696,0.0001596025,0.000001384635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001140666,"about_ca_system_score_gemma":0.000005115592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001897135,"about_ca_topic_score_gemma":0.00004062306,"domain_scores_codex":[0.9991425,0.00009164777,0.0002229554,0.0002474237,0.00006614914,0.0002292693],"domain_scores_gemma":[0.9996134,0.0001227161,0.0001438857,0.0000373353,0.00002865345,0.000053997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003015662,0.00005577896,0.003635868,0.00003944206,0.00000632319,7.631157e-7,0.0002209407,5.625578e-8,0.9940084,0.00001579262,0.0000275842,0.001958944],"study_design_scores_gemma":[0.00009547421,0.00017912,0.2329483,0.00003605455,0.000007244077,0.00002352671,0.0001697434,0.00002527712,0.7657122,0.00002921324,0.0006280467,0.0001457606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989086,0.00004122142,0.00001438185,0.00006914781,0.00009704714,0.0001089063,0.0006669185,0.0000310115,0.00006277343],"genre_scores_gemma":[0.9992673,0.0001003863,0.00008116693,0.00002719591,0.0001856872,0.000001699814,0.0003042037,0.000001631408,0.00003072788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2293125,"threshold_uncertainty_score":0.3268407,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098990266","doi":"10.1186/1475-2859-10-51","title":"Overexpression and purification of U24 from human herpesvirus type-6 in E. coli: unconventional use of oxidizing environments with a maltose binding protein-hexahistine dual tag to enhance membrane protein yield","year":2011,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Protein purification and stability","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC","keywords":"Periplasmic space; Maltose-binding protein; Biochemistry; Fusion protein; Cytoplasm; Biology; Membrane protein; Chemistry; Biophysics; Cell biology; Membrane; Recombinant DNA; Escherichia coli; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02767388157176044,"gpt":0.2356222946132232,"spread":0.2079484130414627,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009629373,0.0001337839,0.0001630145,0.00004338702,0.00004849798,0.0000112348,0.0000860441,0.0001143517,0.00009620011],"category_scores_gemma":[0.00006356402,0.0001261091,0.00002437427,0.00007819474,0.0001176577,0.00001774814,0.00007019555,0.00007749959,0.000002142145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002301657,"about_ca_system_score_gemma":0.00004177081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004406608,"about_ca_topic_score_gemma":0.0001334979,"domain_scores_codex":[0.9990655,0.00006688464,0.0003061877,0.00032481,0.0001081439,0.0001284589],"domain_scores_gemma":[0.9994442,0.000008759046,0.000202635,0.0002482114,0.00004616303,0.00005004884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005918558,0.0002031922,0.002408486,0.00007386161,0.00001182484,5.692157e-7,0.000388401,0.000001408482,0.9961992,0.00003555647,0.000007342267,0.00007828436],"study_design_scores_gemma":[0.0002807853,0.0002497603,0.007478349,0.0001260158,0.000006031856,3.308909e-7,0.00005453195,4.612341e-7,0.989255,0.00001890657,0.00239685,0.0001329746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986991,0.00007690256,0.0002918881,0.000009407067,0.00002145243,0.0007218944,0.0001356865,0.000004283042,0.00003940086],"genre_scores_gemma":[0.9942895,0.00000963479,0.004916071,0.000007107576,0.00001730675,0.00004515263,0.0001283536,0.00001308559,0.0005737523],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006944215,"threshold_uncertainty_score":0.5142581,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100082084","doi":"10.1186/1475-2859-11-160","title":"Effects of synthetic cohesin-containing scaffold protein architecture on binding dockerin-enzyme fusions on the surface of Lactococcus lactis","year":2012,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Cellulosome; Cohesin; Clostridium thermocellum; Lactococcus lactis; Biochemistry; Protein engineering; Chemistry; Fusion protein; Enzyme; Escherichia coli; Recombinant DNA; Biology; Cell biology; Cellulase; Bacteria; Chromatin; DNA; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.006573882260424019,"gpt":0.1985842083557566,"spread":0.1920103260953326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007041316,0.0001971322,0.0001976848,0.00002500325,0.00009283978,0.00001404497,0.000166997,0.0001689174,0.00002569106],"category_scores_gemma":[0.00008129877,0.0001300966,0.00008863433,0.00008994956,0.0001103792,0.000005396137,0.0000814438,0.0001447969,0.000003913032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001562847,"about_ca_system_score_gemma":0.00002278414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001625447,"about_ca_topic_score_gemma":0.000002614939,"domain_scores_codex":[0.9991507,0.00009427026,0.0001966638,0.0001935684,0.0001128506,0.0002519444],"domain_scores_gemma":[0.9994163,0.00009103178,0.0001697728,0.0002203654,0.00004481869,0.0000576974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002628456,0.00006664959,0.0004959792,0.0001342511,0.00002230124,3.322081e-7,0.0002573117,0.00000859332,0.9984301,0.00007407691,0.00007503347,0.0001725666],"study_design_scores_gemma":[0.0002058135,0.000364958,0.001973387,0.00009321912,0.00001770347,0.000001397119,0.00004053558,5.075728e-7,0.995347,0.00001207569,0.001794026,0.000149359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988495,0.000111712,0.00005151722,0.0001006186,0.0002122325,0.0004543472,0.00007251542,0.00001025514,0.0001372665],"genre_scores_gemma":[0.9994351,0.00001256001,0.00007565463,0.00004992109,0.0001393679,0.000009611564,0.0000702659,0.00002030878,0.0001872572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003083041,"threshold_uncertainty_score":0.5305184,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313396085","doi":"10.1186/s12934-022-02007-9","title":"Development of a yeast whole-cell biocatalyst for MHET conversion into terephthalic acid and ethylene glycol","year":2022,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microplastics and Plastic Pollution","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Terephthalic acid; Polyethylene terephthalate; Yeast; Ethylene glycol; Fermentation; Saccharomyces cerevisiae; Polylactic acid; Ethylene; Enzyme; Polyester; Chemistry; Biochemistry; Catalysis; Materials science; Organic chemistry; Polymer; Composite material","retraction":null,"screen_n_in":null,"score":{"opus":0.008861292040606284,"gpt":0.1932785543128847,"spread":0.1844172622722784,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001331182,0.0001395579,0.0001519992,0.00003879951,0.0003645257,0.00002063883,0.000144095,0.00004689101,0.0006361595],"category_scores_gemma":[0.00001043013,0.0001394966,0.00003795387,0.0001072729,0.0001225852,0.00006079077,0.00037428,0.00008598862,0.00003967822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001679142,"about_ca_system_score_gemma":0.00004474188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001774756,"about_ca_topic_score_gemma":0.00007957171,"domain_scores_codex":[0.999122,0.00002685911,0.0002373528,0.0002641662,0.0001487409,0.0002009387],"domain_scores_gemma":[0.999646,0.00003317971,0.000128369,0.0001166945,0.000008872355,0.00006687608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008740912,0.00008372124,0.0009184966,0.00007312132,0.000005922785,9.830841e-7,0.003800865,0.00003044732,0.9915472,0.000002490195,0.003092193,0.0003571063],"study_design_scores_gemma":[0.000500888,0.000101373,0.0008912924,0.000004799736,0.00001408884,0.000003928008,0.0004685512,0.00002220157,0.7967523,0.00001164775,0.2010817,0.0001472623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996447,0.00006867074,0.002244245,0.00002971727,0.0003453613,0.0002622104,0.0003910043,0.00001219639,0.0001996115],"genre_scores_gemma":[0.9941794,0.000004341983,0.004962682,0.00003187434,0.00001962521,0.00001907433,0.0001675222,0.00001259715,0.0006028298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1979895,"threshold_uncertainty_score":0.69655,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159267978","doi":"10.1186/1475-2859-10-7","title":"Modification of genetic regulation of a heterologous chitosanase gene in Streptomyces lividans TK24 leads to chitosanase production in the absence of chitosan","year":2011,"lang":"en","type":"review","venue":"Microbial Cell Factories","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chitosanase; Chitosan; Streptomyces; Biochemistry; Enzyme; Heterologous; Streptomycetaceae; Inducer; Prebiotic; Biology; Chemistry; Microbiology; Gene; Bacteria; Actinomycetales; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02809523928252021,"gpt":0.2759136932602727,"spread":0.2478184539777525,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001304751,0.000447517,0.00106235,0.0002715511,0.00005045791,0.00001094245,0.0005413949,0.0003134793,0.00000650924],"category_scores_gemma":[0.0001288393,0.0003546551,0.0003195085,0.0005225105,0.0002571049,0.000008476512,0.0001468478,0.0001915454,7.336909e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001383899,"about_ca_system_score_gemma":0.0001702688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004143974,"about_ca_topic_score_gemma":0.0009919161,"domain_scores_codex":[0.997358,0.0002987362,0.001208349,0.0006419544,0.000186864,0.0003061438],"domain_scores_gemma":[0.9981704,0.00004930994,0.0008770376,0.000803442,0.00005575969,0.00004410455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001825681,0.0006774645,0.004132946,0.006332418,0.00009662431,0.000002940466,0.001810904,0.0002777733,0.9526088,0.00001042174,0.00008901401,0.03377815],"study_design_scores_gemma":[0.0003179396,0.0007050722,0.02222763,0.001499373,0.0001772286,0.00001858923,0.0003736879,9.142449e-7,0.9685354,0.000008463418,0.005679231,0.0004565229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6530926,0.3455828,0.00001857387,0.000007592022,0.0002048807,0.0007968855,0.0002267388,0.000004002905,0.00006598142],"genre_scores_gemma":[0.6312934,0.3679672,0.0002164838,0.000006467732,0.0001532016,0.00005955745,0.0002710024,0.00002647559,0.000006187771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03332163,"threshold_uncertainty_score":0.9998906,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3003941521","doi":"10.1186/s12934-020-1286-7","title":"The effects of external Mn2+ concentration on hyphal morphology and citric acid production are mediated primarily by the NRAMP-family transporter DmtA in Aspergillus niger","year":2020,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"European Social Fund; Nemzeti Kutatási, Fejlesztési és Innovaciós Alap; European Commission; Natural Sciences and Engineering Research Council of Canada; Innovációs és Technológiai Minisztérium; European Regional Development Fund; Debreceni Egyetem","keywords":"Aspergillus niger; Citric acid; Transporter; Chemistry; Food science; Microbiology; Biochemistry; Biology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.00691537838454727,"gpt":0.2039270648730947,"spread":0.1970116864885474,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008459846,0.00013043,0.000130547,0.00001266296,0.00009044342,0.00002659869,0.0001516667,0.0001147443,0.000003294348],"category_scores_gemma":[0.00009938546,0.00008276572,0.00003814396,0.0001018286,0.0002152294,0.000003482366,0.00004032267,0.0001668055,0.000001992806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001228966,"about_ca_system_score_gemma":0.00004926139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002685849,"about_ca_topic_score_gemma":0.0000247262,"domain_scores_codex":[0.9990914,0.0001194704,0.0001797455,0.0002722822,0.0001315516,0.0002055136],"domain_scores_gemma":[0.9996289,0.00004423518,0.00007301535,0.000139722,0.00006400991,0.00005009036],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004185598,0.00004333625,0.005205413,0.00004882774,0.0000139365,0.000003622432,0.000304548,0.000007115646,0.9920512,0.000001674927,0.001400183,0.0005015957],"study_design_scores_gemma":[0.0005212193,0.0003818536,0.01873806,0.000009071655,0.00000887675,0.00000285737,0.0000731594,0.000005391817,0.9758378,0.000003904105,0.004328575,0.00008919134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994847,0.003907877,0.00005162593,0.0005196785,0.0002615919,0.0003152035,0.00005082199,0.000003649228,0.00004253026],"genre_scores_gemma":[0.9982311,0.001146731,0.00001197373,0.0002367336,0.0001523492,0.00001146724,0.00007368575,0.000012243,0.0001237634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01621334,"threshold_uncertainty_score":0.3375088,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2565655949","doi":"10.1186/s12934-016-0614-4","title":"The ACEII recombinant Trichoderma reesei QM9414 strains with enhanced xylanase production and its applications in production of xylitol from tree barks","year":2016,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"","keywords":"Trichoderma reesei; Xylose; Cellulase; Xylanase; Xylitol; Bark (sound); Chemistry; Enzyme; Biochemistry; Biology; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.00709660501799995,"gpt":0.1850509509452893,"spread":0.1779543459272894,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001012162,0.0001607467,0.0001524569,0.00007019033,0.0001217044,0.00002316407,0.00009762798,0.0000904767,0.00001451676],"category_scores_gemma":[0.00005127566,0.00009354939,0.00002491097,0.0002240959,0.0001031085,0.0002138212,0.00002081583,0.0001232556,0.000005424881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007892743,"about_ca_system_score_gemma":0.00002639666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003690777,"about_ca_topic_score_gemma":0.0003267528,"domain_scores_codex":[0.9991357,0.00003955961,0.0002375369,0.0003114394,0.00009426563,0.0001814922],"domain_scores_gemma":[0.9995112,0.0000399255,0.00007389097,0.0002524938,0.00008264984,0.00003977243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000699938,0.00003342475,0.0002867809,0.00008811216,0.00001341708,1.831753e-7,0.0006494806,0.00001990647,0.9926922,0.000009129376,0.001023543,0.00511384],"study_design_scores_gemma":[0.0003569269,0.00004972023,0.002219744,0.00005089336,0.00001461451,0.000001878029,0.0004990816,0.00001119936,0.9820665,0.00004399791,0.01453267,0.0001528089],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964201,0.0006036526,0.0004308033,0.0007505143,0.0009315451,0.0006307734,0.00002986367,0.00008413311,0.0001186329],"genre_scores_gemma":[0.9973986,0.0010065,0.00009846295,0.000002697053,0.0001906824,0.00003502289,0.00002159065,0.00001880517,0.001227653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01350913,"threshold_uncertainty_score":0.3814833,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2953581947","doi":"10.1186/s12934-019-1163-4","title":"A kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition","year":2019,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Algal biology and biofuel production","field":"Energy","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Rimouski; Polytechnique Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Natural Science Foundation of Shandong Province; Fonds Québécois de la Recherche sur la Nature et les Technologies; China Postdoctoral Science Foundation; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Metabolic flux analysis; Flux (metallurgy); Lipid metabolism; Pentose phosphate pathway; Biochemistry; Metabolic pathway; Heterotroph; Biology; Metabolic network; Metabolism; Starch; Chemistry; Glycolysis","retraction":null,"screen_n_in":null,"score":{"opus":0.01183052506803264,"gpt":0.2259443126002294,"spread":0.2141137875321967,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001298856,0.0001934064,0.0003154456,0.0001521776,0.00005401018,0.00001599213,0.0001164488,0.0001467993,0.0003146779],"category_scores_gemma":[0.0000239479,0.0001631831,0.00005230536,0.0002650656,0.00009894143,0.000151106,0.00004054598,0.0001953415,0.000117811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004190431,"about_ca_system_score_gemma":0.00002533889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009225012,"about_ca_topic_score_gemma":0.0005834777,"domain_scores_codex":[0.9987157,0.0001756537,0.0003625782,0.0004197641,0.0001043098,0.0002219682],"domain_scores_gemma":[0.9994221,0.00001659682,0.0001712657,0.0002836979,0.00008416408,0.0000221544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003063388,0.0005629336,0.01931579,0.0000980784,0.00003162741,6.558108e-7,0.001467847,0.001221606,0.9765801,0.0001577802,0.0000362518,0.0002209158],"study_design_scores_gemma":[0.001107375,0.0007818083,0.06906152,0.0000230774,0.00003001833,0.000006175776,0.00084161,0.000003013464,0.9224982,0.0004802729,0.004916345,0.0002506031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966262,0.0001660669,0.00000274709,0.00006141257,0.001326954,0.001421289,0.000005508291,0.00004756751,0.0003422721],"genre_scores_gemma":[0.9985554,0.00003467986,0.00002224135,0.00001992168,0.0003287535,0.000060463,0.00004124178,0.00002016364,0.000917155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05408198,"threshold_uncertainty_score":0.6654414,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313339542","doi":"10.1186/s12934-022-02001-1","title":"Construction of cell factory through combinatorial metabolic engineering for efficient production of itaconic acid","year":2022,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Petro-Canada","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China; National Science Foundation","keywords":"Itaconic acid; Metabolic engineering; Biochemistry; Chemistry; Combinatorial chemistry; Biotechnology; Biology; Enzyme; Organic chemistry; Monomer","retraction":null,"screen_n_in":null,"score":{"opus":0.005451742085825732,"gpt":0.1917365979197764,"spread":0.1862848558339506,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001533598,0.0001853333,0.0002772691,0.00007113546,0.0001104001,0.000007365725,0.0001456282,0.00009131862,0.00001785561],"category_scores_gemma":[0.0000570003,0.0002010502,0.0001554769,0.0001707825,0.00007852026,0.000007033052,0.00009357636,0.0001216946,4.424104e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000276084,"about_ca_system_score_gemma":0.00008177228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000250505,"about_ca_topic_score_gemma":8.792559e-7,"domain_scores_codex":[0.9989488,0.0000398686,0.0003399542,0.0003376932,0.0001227733,0.0002109746],"domain_scores_gemma":[0.9993451,0.000005476173,0.0002137047,0.000264229,0.0001452345,0.00002623685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001490411,0.0001439872,0.00004385079,0.000206427,0.0000372539,6.795481e-8,0.0003109673,0.006756051,0.9916373,0.0002690236,0.0003715821,0.00007438782],"study_design_scores_gemma":[0.000565226,0.0002274732,0.00005578053,0.000004937336,0.00005074065,0.000006720736,0.0001827174,0.00001127667,0.9324001,0.00001153642,0.06630544,0.000178052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987649,0.001701443,0.003054045,0.00001456511,0.00694965,0.0003903112,0.0001898753,0.00002272992,0.00002834576],"genre_scores_gemma":[0.9963877,0.00009529015,0.002580217,0.000004132672,0.0005347339,0.00003065907,0.0001895131,0.00003007845,0.0001476509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06593386,"threshold_uncertainty_score":0.819859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}