{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":34,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":34,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"0a1957b19dcc","filters":{"venue":"Microbial Physiology"}},"results":[{"id":"W2609912642","doi":"10.1159/000464443","title":"Synthetic, Switchable Enzymes","year":2017,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":639,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Science and Technology Facilities Council; National Institutes of Health","keywords":"Aptamer; Substrate (aquarium); Linker; Combinatorial chemistry; Pairwise comparison; Biology; Enzyme; Biophysics; Biochemistry; Chemistry; Computer science; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03969574473920007,"gpt":0.3476558525852039,"spread":0.3079601078460039,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000149543,0.0005294781,0.001514375,0.00009887611,0.0002307769,0.00004148866,0.0006917102,0.0008472282,0.00001055097],"category_scores_gemma":[0.00009734987,0.0004128027,0.0008475196,0.00005880261,0.000321463,0.000002620722,0.0004136013,0.0002747338,0.00007712541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002634872,"about_ca_system_score_gemma":0.0001649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001568373,"about_ca_topic_score_gemma":0.00001607141,"domain_scores_codex":[0.9979955,0.0001692772,0.0004283358,0.0009094709,0.00005924059,0.0004381916],"domain_scores_gemma":[0.9979389,0.00001884631,0.0005275178,0.001372575,0.00007253738,0.00006958574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002092574,0.00006871521,9.835767e-8,0.001340188,0.0003655386,0.000006410386,0.000001941242,1.823525e-7,0.254794,0.00003836553,0.01472462,0.728639],"study_design_scores_gemma":[0.00007365603,0.0001037752,3.513366e-7,0.0008948316,0.0003310389,0.00006425275,0.000001218664,2.031007e-7,0.03038933,0.00005248614,0.967622,0.0004668773],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004432219,0.998473,0.00005164941,0.00001672196,0.0002626531,0.0002951502,0.0001186354,0.00005323708,0.0006846031],"genre_scores_gemma":[0.0004347023,0.9935193,0.0007331167,0.00009192764,0.0009638381,0.00002841818,0.0009661575,0.00007468584,0.003187853],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9528974,"threshold_uncertainty_score":0.9998324,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089359137","doi":"10.1159/000121324","title":"Anaerobic Biodegradation of Aromatic Hydrocarbons: Pathways and Prospects","year":2008,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":321,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biodegradation; Bioremediation; Anaerobic exercise; Environmental chemistry; Aromatic hydrocarbon; Microbial biodegradation; Chemistry; Biochemical engineering; Hydrocarbon; Organic chemistry; Microorganism; Biology; Bacteria; Ecology; Contamination; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.02216735456294895,"gpt":0.234724634068479,"spread":0.21255727950553,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007205408,0.0003575759,0.001106439,0.00008429084,0.00008129084,0.000008432655,0.0002513022,0.0003359622,0.0001790576],"category_scores_gemma":[0.00002937224,0.0002813031,0.0001975074,0.0003123874,0.0005100543,0.00006638448,0.0002020246,0.0001869261,0.0003863518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000100939,"about_ca_system_score_gemma":0.00005051483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008038205,"about_ca_topic_score_gemma":0.00003298428,"domain_scores_codex":[0.9983649,0.0001551372,0.0005893363,0.0005113549,0.0001004067,0.0002789242],"domain_scores_gemma":[0.9990573,0.00005129951,0.0005233117,0.000292714,0.000002929962,0.00007243366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001287861,0.0002015312,0.00001868483,0.001701939,0.00008112,0.000006344748,0.0001893411,6.200105e-7,0.6952965,0.00001827033,0.006822537,0.2956502],"study_design_scores_gemma":[0.0005692708,0.0002739737,0.0007301027,0.001831428,0.0002322948,0.0001687095,0.000009155548,0.000008810292,0.004812623,0.0003001376,0.9901055,0.0009580029],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04420631,0.9538553,0.000003030212,0.00001403005,0.0003024044,0.001071563,0.0001093001,0.00005461349,0.0003834586],"genre_scores_gemma":[0.00433174,0.9948102,0.0003698581,0.00005611339,0.00005662304,0.000009754895,0.0002688068,0.00002662521,0.00007023125],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.983283,"threshold_uncertainty_score":0.9999639,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026764734","doi":"10.1159/000094053","title":"Archaeal Flagella, Bacterial Flagella and Type IV Pili: A Comparison of Genes and Posttranslational Modifications","year":2006,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Flagellum; Pilus; Biology; Pilin; Flagellin; Caulobacter crescentus; Signal peptidase; Fimbriae Proteins; Archaea; Signal peptide; Microbiology; Gene; Genetics; Cell biology; Peptide sequence; Escherichia coli; Bacterial protein","retraction":null,"screen_n_in":null,"score":{"opus":0.04160953440066361,"gpt":0.3052120614803796,"spread":0.263602527079716,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005824582,0.0002474471,0.000718113,0.00006169912,0.00009771732,0.00001034301,0.0001717,0.0004088486,0.00002216452],"category_scores_gemma":[0.00000982232,0.0002437956,0.0001303939,0.0000662032,0.000357024,0.000002327073,0.0001686067,0.0001284877,0.000007349611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006956442,"about_ca_system_score_gemma":0.0001258482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005845536,"about_ca_topic_score_gemma":0.00004567615,"domain_scores_codex":[0.998857,0.0001623462,0.0003299666,0.000426141,0.0000423802,0.0001822087],"domain_scores_gemma":[0.9994381,0.0000300345,0.0001981692,0.0002177393,0.00006832025,0.0000476186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000119453,0.00009219797,0.00005334693,0.001915573,0.0001579543,6.859219e-7,0.00003928251,0.000006123345,0.9511213,0.00007748586,0.001642981,0.04477361],"study_design_scores_gemma":[0.0004551242,0.0003161698,0.0006828997,0.000206047,0.0003174426,0.00003056756,0.000005356648,0.000006743445,0.007222319,0.0001060091,0.9902546,0.0003967278],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1097736,0.888668,0.0000366117,0.00001044869,0.000204418,0.0004095255,0.0007967917,0.000005792641,0.00009478034],"genre_scores_gemma":[0.03698324,0.956164,0.0005110216,0.00002082027,0.0005326671,0.0000102025,0.005570186,0.00002819971,0.0001796764],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9886116,"threshold_uncertainty_score":0.9941698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971314022","doi":"10.1159/000356189","title":"The State of RT-Quantitative PCR: Firsthand Observations of Implementation of Minimum Information for the Publication of Quantitative Real-Time PCR Experiments (MIQE)","year":2013,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Bio-Rad (Canada)","funders":"","keywords":"Real-time polymerase chain reaction; State (computer science); Computer science; Computational biology; Biology; Programming language; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02424786661962743,"gpt":0.3156367809871266,"spread":0.2913889143674991,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001916532,0.0001001574,0.0001871023,0.00004078368,0.00009066123,0.000005737511,0.0002468809,0.00007633529,0.00001568322],"category_scores_gemma":[0.00008216856,0.00006988019,0.0001034233,0.0001219767,0.0003485102,0.00001959031,0.00008076221,0.00003313714,0.000001840596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000742937,"about_ca_system_score_gemma":0.00006180297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004255855,"about_ca_topic_score_gemma":0.00003554529,"domain_scores_codex":[0.999031,0.00008482503,0.0005696383,0.0001323294,0.00005240802,0.0001298014],"domain_scores_gemma":[0.997978,0.0001340937,0.0007794516,0.0003120267,0.0007816551,0.00001475198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001100856,0.00005674968,0.00004775834,0.00002817916,0.0001128351,1.692111e-9,0.0004029129,0.00003051181,0.992546,0.002645014,0.002998917,0.001021037],"study_design_scores_gemma":[0.0004841276,0.0006219262,0.01204446,0.000007587479,0.000027288,2.771606e-7,0.0004857733,0.0002132339,0.9833595,0.0008911214,0.00179795,0.0000668037],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902127,0.0001037481,0.00776123,0.0003246439,0.000029867,0.001127994,0.0003952374,0.000004275074,0.00004034034],"genre_scores_gemma":[0.9918066,0.0002482996,0.006335719,0.00005862581,0.0000100668,0.0003479004,0.001134205,0.000008375614,0.00005022922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0119967,"threshold_uncertainty_score":0.2849631,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075399624","doi":"10.1159/000323501","title":"Functions of Lipopeptides Bacillomycin D and Fengycin in Antagonism of <i>Bacillus amyloliquefaciens</i> C06 towards <i>Monilinia fructicola</i>","year":2011,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Bacillus amyloliquefaciens; Mycelium; Spore germination; Biology; Chemistry; Microbiology; Botany; Spore; Biochemistry; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.01778823675655286,"gpt":0.2055590789814406,"spread":0.1877708422248877,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005020288,0.0006207237,0.001221086,0.000126768,0.0002885953,0.00003389276,0.000715502,0.0006905406,0.0008189173],"category_scores_gemma":[0.0001427291,0.0003069745,0.0003784626,0.0008850677,0.0008754423,0.0002599156,0.000437763,0.0004043127,0.00008546333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008100133,"about_ca_system_score_gemma":0.00007085736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003107951,"about_ca_topic_score_gemma":0.003470568,"domain_scores_codex":[0.9962004,0.0003983685,0.001155351,0.001040249,0.0002777705,0.0009278756],"domain_scores_gemma":[0.9983379,0.0002294561,0.0005324593,0.0003340314,0.0003231321,0.0002430232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000312777,0.0005878263,0.0002002591,0.00006176648,0.00009349443,0.000009121321,0.0008197509,0.00001296081,0.9844681,0.001957763,0.002864715,0.008611435],"study_design_scores_gemma":[0.00181362,0.003183511,0.3981327,0.0001619709,0.0001720058,0.0001239965,0.0002874256,0.00003254097,0.4617395,0.001939303,0.1310963,0.001317191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918508,0.001209098,0.00000608343,0.0002473879,0.0006907666,0.0006892851,0.0006913814,0.00009173668,0.004523447],"genre_scores_gemma":[0.9968212,0.0007294433,0.0005231652,0.0002143899,0.0004737288,0.00005009584,0.0002537849,0.000009481285,0.0009247446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5227286,"threshold_uncertainty_score":0.9999382,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995354591","doi":"10.1159/000096461","title":"A New Piece of an Old Jigsaw: Glucose Kinase Is Activated Posttranslationally in a Glucose Transport-Dependent Manner in <i>Streptomyces coelicolor </i>A3(2)","year":2006,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Jigsaw; Streptomyces coelicolor; Biology; Genetics; Streptomyces; Psychology; Bacteria; Mathematics education","retraction":null,"screen_n_in":null,"score":{"opus":0.008515730049069787,"gpt":0.2302491884074897,"spread":0.22173345835842,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002552189,0.000475795,0.0009987953,0.0004772963,0.00005936051,0.00001333945,0.0003178286,0.0004824757,0.0009222131],"category_scores_gemma":[0.00004079025,0.0004153916,0.0002332384,0.0006775938,0.0001918903,0.0002251616,0.00004778395,0.0004318507,0.00003683719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001470796,"about_ca_system_score_gemma":0.0003079922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002215796,"about_ca_topic_score_gemma":0.005511309,"domain_scores_codex":[0.9969879,0.0001742632,0.0009902534,0.0009429584,0.0002309529,0.0006736873],"domain_scores_gemma":[0.9988027,0.00008312183,0.0002743469,0.0005067794,0.000170772,0.000162284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003771863,0.00141628,0.0002858954,0.0001566572,0.00006550122,0.0001055982,0.0003392309,0.00008857394,0.9859449,0.0001622961,0.002294415,0.005368801],"study_design_scores_gemma":[0.004470774,0.000521042,0.1036399,0.0001995934,0.00008236547,0.00004600611,0.00001198678,0.00002884219,0.8822632,0.0003630632,0.007978074,0.000395112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994917,0.0009859992,0.000005040349,0.002401701,0.0001793935,0.0009774712,0.0003063781,0.00006297799,0.000164066],"genre_scores_gemma":[0.9959685,0.0001312766,0.001051307,0.0009440018,0.0004008402,0.000006059608,0.0006998272,0.00005564633,0.0007424916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1036816,"threshold_uncertainty_score":0.9999911,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005850676","doi":"10.1159/000119547","title":"The <i>Vibrio cholerae</i> Mrp System: Cation/Proton Antiport Properties and Enhancement of Bile Salt Resistance in a Heterologous Host","year":2008,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Antiporter; Operon; Chemistry; Escherichia coli; Sodium–hydrogen antiporter; Sodium; Molecular biology; Nuclear chemistry; Biology; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01308706228090634,"gpt":0.2215017261177306,"spread":0.2084146638368242,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002284094,0.0002030334,0.0003512068,0.00005283051,0.0002587643,0.00001372909,0.0002220429,0.000131347,0.000003417628],"category_scores_gemma":[0.00007662675,0.000148312,0.00006488448,0.0001013502,0.0007644896,0.000007849049,0.000299802,0.00009902209,0.000006190151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004606559,"about_ca_system_score_gemma":0.0001570945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005023559,"about_ca_topic_score_gemma":0.0006349096,"domain_scores_codex":[0.9984133,0.0001979411,0.0004086416,0.0004563767,0.0001016008,0.0004221808],"domain_scores_gemma":[0.9991887,0.00001918144,0.0001680702,0.0004261014,0.00015464,0.00004326244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000650408,0.00007645829,0.0004084357,0.0002079452,0.00006541465,0.000003963263,0.0002337213,0.000004017964,0.997044,0.00003079534,0.001242083,0.00003277609],"study_design_scores_gemma":[0.0008468739,0.0004667116,0.04311359,0.00008762924,0.000008348398,0.00002533549,0.00002928105,0.00000602829,0.9277231,0.000009255605,0.02749927,0.0001845424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936846,0.00491097,0.00001431571,0.0002446954,0.0001377678,0.0008182897,0.00002797105,0.00001101621,0.0001503495],"genre_scores_gemma":[0.9964319,0.00240117,0.000101767,0.00007285554,0.0001346152,0.0002303315,0.00005426742,0.00001972547,0.0005533394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06932084,"threshold_uncertainty_score":0.6047988,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992198095","doi":"10.1159/000341107","title":"Newly Isolated and Characterized Bacteria with Great Application Potential for Decomposition of Lignocellulosic Biomass","year":2012,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"","keywords":"Lignocellulosic biomass; Lignin; Cellulase; Chemistry; Food science; Xylan; Cellulose; Biomass (ecology); Carboxymethyl cellulose; Absorbance; Xylose; Bacteria; Xylanase; Firmicutes; Botany; Fermentation; Biochemistry; Biology; Organic chemistry; Sodium; Agronomy; Chromatography","retraction":null,"screen_n_in":null,"score":{"opus":0.004976538672622405,"gpt":0.1945295081763492,"spread":0.1895529695037268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003396625,0.00009531652,0.0001402358,0.00004460422,0.00003466663,0.000005140882,0.00003664934,0.0000948419,0.00002272601],"category_scores_gemma":[5.8551e-7,0.00008219454,0.00002711645,0.00005376801,0.00004862084,0.0000972654,0.00001309817,0.00003738003,0.000008335721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001339688,"about_ca_system_score_gemma":0.000003201215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009393327,"about_ca_topic_score_gemma":5.110846e-7,"domain_scores_codex":[0.9995849,0.00001460465,0.0001162985,0.0001190515,0.00001702857,0.0001480835],"domain_scores_gemma":[0.9997991,0.000005248901,0.00004538828,0.00008590794,0.00002978784,0.00003461368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003126894,0.0000279328,0.0000355687,0.0001649361,0.00002772245,3.235382e-8,0.00004423221,0.000006476256,0.9982052,0.000006017538,0.0001925504,0.0009766159],"study_design_scores_gemma":[0.0009598039,0.0001405479,0.01053686,0.000009390939,0.00003514997,0.00001742557,0.000006901604,0.001555824,0.9832751,0.00001840348,0.00331133,0.0001333138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990435,0.00005391411,0.008780061,0.00006841937,0.0002915635,0.0002729654,0.00002787635,0.00006315579,0.000007025536],"genre_scores_gemma":[0.9983353,0.00002068264,0.001086659,0.00002743331,0.0002280791,0.0000129576,0.0002628849,0.00001431204,0.00001169857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01493018,"threshold_uncertainty_score":0.3351796,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768802022","doi":"10.1159/000481286","title":"The Membrane Attack Complex/Perforin Superfamily","year":2017,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Pancreatitis Pathology and Treatment","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University","funders":"National Institute of General Medical Sciences","keywords":"Biology; Complement membrane attack complex; Protein family; SUPERFAMILY; Perforin; Cytolysin; Protein domain; Genetics; Computational biology; Gene; Immune system; Complement system","retraction":null,"screen_n_in":null,"score":{"opus":0.04586906105684497,"gpt":0.3146497766815943,"spread":0.2687807156247494,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009625887,0.0001458666,0.000316186,0.00001759937,0.001065072,0.00002243407,0.0002314594,0.0001132488,0.0001574622],"category_scores_gemma":[0.00006165545,0.00009184041,0.0001059897,0.00001709367,0.0006656898,0.0000401355,0.0001133098,0.0001744865,0.0006124088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003343391,"about_ca_system_score_gemma":0.00004814492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000126401,"about_ca_topic_score_gemma":0.00009379222,"domain_scores_codex":[0.9991526,0.0000638673,0.0001531464,0.0002592843,0.00004568406,0.0003254043],"domain_scores_gemma":[0.9989524,0.00007070872,0.00007791158,0.0007937634,0.00004243418,0.0000627757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003520216,0.0001042295,0.005618972,0.00001357476,0.000118805,0.00006520472,0.00005764935,0.000001658529,0.9847513,0.0004891891,0.006719491,0.001707931],"study_design_scores_gemma":[0.002313754,0.0003456414,0.9005138,0.00001927349,0.00009349488,0.0002292958,0.00001857083,0.00001751049,0.04602024,0.000167943,0.05014656,0.0001139504],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875018,0.0001505251,0.000002631618,0.002504448,0.0004587874,0.0002307478,0.0000197582,0.00003557325,0.009095712],"genre_scores_gemma":[0.9956047,0.0002231308,0.0001822774,0.0007297192,0.0003479476,0.00001981161,0.00006382919,0.00001429051,0.002814291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.938731,"threshold_uncertainty_score":0.8191778,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038109524","doi":"10.1159/000077868","title":"Recent Advances in the Structure and Assembly of the Archaeal Flagellum","year":2004,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Flagellum; Flagellin; Pilus; Protein filament; Biology; Signal peptidase; Signal peptide; Cell biology; Bacteria; Peptide sequence; Microbiology; Biochemistry; Genetics; Gene; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.00871056771439226,"gpt":0.2569029831574014,"spread":0.2481924154430091,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009508819,0.0002729664,0.0006187853,0.00004223131,0.0000492766,0.000007569911,0.0006456648,0.0006950668,0.000006880835],"category_scores_gemma":[0.00003093012,0.0001445535,0.0001650966,0.0001581108,0.0004384668,0.000001343308,0.0003941036,0.0003523604,0.000001029889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001401188,"about_ca_system_score_gemma":0.0001704835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009640991,"about_ca_topic_score_gemma":0.0001597514,"domain_scores_codex":[0.9986844,0.0002661563,0.0003434829,0.0004064922,0.00004720825,0.0002522378],"domain_scores_gemma":[0.9991799,0.00001740007,0.000257559,0.0004998392,0.00002890272,0.00001638926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001665817,0.0000298541,6.026232e-7,0.001185144,0.00003154489,7.445751e-7,0.00002488081,0.000002866496,0.6370014,0.00007024695,0.00007884183,0.3615572],"study_design_scores_gemma":[0.0001837417,0.0001559184,0.00004858356,0.0004424419,0.00006011908,0.00005695771,0.000009311498,5.823286e-8,0.02113577,0.0002606039,0.9774845,0.0001619519],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04078123,0.9580994,0.000001244007,0.0001063284,0.0003907003,0.0004585236,0.0001410628,0.000002538186,0.00001899303],"genre_scores_gemma":[0.01057398,0.9888028,0.00004823027,0.0001140829,0.0002439979,0.000008776745,0.0001738809,0.00001970972,0.00001457894],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9774057,"threshold_uncertainty_score":0.5894721,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013853397","doi":"10.1159/000330669","title":"Decolorizing Activity of Malachite Green and Its Mechanisms Involved in Dye Biodegradation by <i>Achromobacter xylosoxidans</i> MG1","year":2011,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Key Research and Development Program of China; Department of Science and Technology, Ministry of Science and Technology, India; McMaster University","keywords":"Biodegradation; Malachite green; Achromobacter xylosoxidans; Extracellular; Microbiology; Chemistry; Bacteria; Biotransformation; Food science; Biochemistry; Biology; Enzyme; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01828260621120808,"gpt":0.1936036439670619,"spread":0.1753210377558538,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002209662,0.0002300114,0.0003620909,0.00004883595,0.00009293473,0.00001231313,0.0002338195,0.0002885682,0.0001475184],"category_scores_gemma":[0.0000385111,0.0001225676,0.00007039222,0.000325045,0.0001037805,0.0002896522,0.0001307121,0.0001643359,0.00002558813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004518048,"about_ca_system_score_gemma":0.00001293668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005069238,"about_ca_topic_score_gemma":0.00512698,"domain_scores_codex":[0.9984781,0.0002565628,0.0003252879,0.0004764898,0.00009904173,0.0003644912],"domain_scores_gemma":[0.9994083,0.0001129901,0.0002464877,0.00008346208,0.00007165845,0.00007707837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001313577,0.000190766,0.0003474001,0.00001733707,0.00001844375,0.000001047492,0.0001308941,4.303192e-7,0.9950265,0.0004854731,0.0001618368,0.003488512],"study_design_scores_gemma":[0.0003903812,0.0003524892,0.2144573,0.00002359159,0.00001974777,0.000001975963,0.00001848633,0.00007773926,0.7830467,0.001023374,0.0003489918,0.0002392673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989204,0.0001172392,0.00001628177,0.0002001114,0.0001515595,0.0003143339,0.0001375433,0.00004506589,0.00009740631],"genre_scores_gemma":[0.9990337,0.00006818101,0.0002117637,0.0001199332,0.00007734008,0.00001884868,0.0003920017,0.000003494954,0.00007468201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2141099,"threshold_uncertainty_score":0.4998162,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990474331","doi":"10.1159/000121328","title":"Fungal Enzymes for Environmental Purposes, a Molecular Biology Challenge","year":2008,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Peroxidase; Biochemical engineering; Hydrogen peroxide; Heterologous; Substrate (aquarium); Enzyme; Biotechnology; Biology; Biochemistry; Engineering; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.02881612317748745,"gpt":0.2664151545019316,"spread":0.2375990313244442,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007886153,0.0005766331,0.00144429,0.00004225719,0.0002012341,0.00001577073,0.0005817664,0.0009358822,0.0002545662],"category_scores_gemma":[0.00003745981,0.0002458085,0.0007798767,0.0001596533,0.000244491,0.00005453994,0.000190469,0.0003586094,0.0002510835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009954502,"about_ca_system_score_gemma":0.0000357828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003032077,"about_ca_topic_score_gemma":0.00003994678,"domain_scores_codex":[0.9974779,0.0003518112,0.0005663775,0.0009002276,0.0000744741,0.0006291319],"domain_scores_gemma":[0.9989612,0.0003713442,0.0003902215,0.0001524416,0.00002075995,0.0001040245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001871368,0.0001669327,4.539736e-7,0.0002980033,0.0001101617,0.000007770265,0.000009244024,1.955646e-7,0.2075581,0.0003195677,0.002987372,0.7885235],"study_design_scores_gemma":[0.0001709704,0.0004636316,0.00001669246,0.0001794395,0.0001130303,0.00007055262,0.000005756043,7.802745e-7,0.0005936095,0.0001996567,0.9976969,0.0004889431],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001798433,0.9941965,0.00000570917,0.0000853809,0.0004872877,0.001328061,0.001913668,0.00008911578,0.00009583674],"genre_scores_gemma":[0.0004622529,0.985261,0.0001266865,0.0001593665,0.001085093,0.0003148012,0.0123833,0.000009594093,0.0001978782],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9947096,"threshold_uncertainty_score":0.9999994,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981557743","doi":"10.1159/000068721","title":"O-Glycosylation of a Recombinant Carbohydrate-Binding Module Mutant Secreted by <i>Pichia pastoris</i>","year":2003,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Pichia pastoris; Glycosylation; Mannose; Glycan; Biochemistry; Carbohydrate-binding module; Chemistry; Recombinant DNA; N-linked glycosylation; Mutant; Fusion protein; Yeast; Oligosaccharide; Glycoprotein; Molecular biology; Biology; Cellulose; Cellulase; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.007343969009796794,"gpt":0.2264479981404897,"spread":0.2191040291306929,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003440324,0.0002609056,0.000356423,0.0001377274,0.0001980054,0.00002096183,0.0002577124,0.0003859688,0.0002087289],"category_scores_gemma":[0.000233729,0.0002673249,0.0001565682,0.0002726283,0.0001902736,0.00001050575,0.000103054,0.0001786829,0.00004421602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007130887,"about_ca_system_score_gemma":0.0002201717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006074381,"about_ca_topic_score_gemma":0.0001424447,"domain_scores_codex":[0.9978106,0.0004372841,0.0004376107,0.0005727842,0.0001690652,0.0005726303],"domain_scores_gemma":[0.9989026,0.00002518436,0.000209292,0.0004825493,0.0002395651,0.0001407628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002245704,0.0001467457,0.0000645654,0.00003054002,0.00006623967,0.000002318146,0.00006667858,0.00008734612,0.9933167,0.0009638893,0.004683412,0.0003469833],"study_design_scores_gemma":[0.001116865,0.0003895388,0.0004547042,0.00001645162,0.00001401947,0.000007294546,0.00001075689,0.00009239184,0.8175393,0.00022183,0.1798787,0.0002580969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963949,0.0004705004,0.0007042114,0.00008012621,0.000588935,0.0004866756,0.00007481204,0.0000227885,0.001177021],"genre_scores_gemma":[0.9966769,0.0001999808,0.000306776,0.00006737682,0.0001298477,0.00003563748,0.0007462372,0.00004396046,0.00179324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1757774,"threshold_uncertainty_score":0.9999779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1537423632","doi":"10.1159/000121326","title":"Diversity of the C-Terminal Portion of the Biphenyl Dioxygenase Large Subunit","year":2008,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylogenetic tree; Biphenyl; Bacteria; Enzyme; Context (archaeology); Stereospecificity; Stereochemistry; Chemistry; Dioxygenase; Biology; Biochemistry; Catalysis; Genetics; Gene; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01097868716413607,"gpt":0.1864594190385701,"spread":0.175480731874434,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008670246,0.00008058989,0.0001285789,0.00001042378,0.0003591114,7.797553e-7,0.0003905,0.00006760668,0.001079204],"category_scores_gemma":[0.00002007451,0.00004646393,0.0001204339,0.0001868879,0.0005249582,0.00004125264,0.001121088,0.00008655174,0.00004948709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003378231,"about_ca_system_score_gemma":0.00001613334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003527337,"about_ca_topic_score_gemma":0.00023556,"domain_scores_codex":[0.9993005,0.0001040128,0.0001817138,0.0001444001,0.0001096669,0.0001597455],"domain_scores_gemma":[0.9994997,0.00001209748,0.0002007013,0.0002502063,0.00001387066,0.00002341505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000300272,0.0000944759,0.04885019,0.000004463675,0.000004896329,6.218052e-7,0.0004111466,0.00001250918,0.9475245,0.000006900581,0.003006363,0.00005383906],"study_design_scores_gemma":[0.0002131125,0.00001841495,0.6210431,0.00000354267,0.000006008809,0.000008233442,0.0000124193,0.000004047281,0.3768106,0.00002346453,0.001812277,0.00004474753],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991993,0.000004192097,0.000004721078,0.0001140669,0.0002506132,0.0001320333,0.00007246701,0.000005340687,0.0002173064],"genre_scores_gemma":[0.9992862,0.00001054568,0.00001532202,0.0003235007,0.0000260748,3.000627e-7,0.00000581597,0.000003323369,0.0003289462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.572193,"threshold_uncertainty_score":0.9998339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967297927","doi":"10.1159/000092819","title":"Mass Spectrometric Identification of Proteins in Complex Post-Genomic Projects","year":2006,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institute for Theoretical Astrophysics","keywords":"Computational biology; Identification (biology); Proteomics; Mass spectrometry; Computer science; Bioinformatics; Chemistry; Biology; Biochemistry; Chromatography","retraction":null,"screen_n_in":null,"score":{"opus":0.0122067548884329,"gpt":0.2490962521535889,"spread":0.236889497265156,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005328649,0.0001104678,0.0002020219,0.0001516666,0.000037701,0.000006214486,0.0002161222,0.00009889641,0.0001303838],"category_scores_gemma":[0.00001250082,0.0001193674,0.00005510067,0.0003147831,0.00008567452,0.00003664129,0.00004789648,0.0001320039,0.00002009571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009651861,"about_ca_system_score_gemma":0.00003207543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003680877,"about_ca_topic_score_gemma":0.00003478204,"domain_scores_codex":[0.9990848,0.00001443533,0.0003844956,0.0002768177,0.00003875606,0.0002007292],"domain_scores_gemma":[0.9993853,0.00001776033,0.0002296066,0.0002957592,0.00005829824,0.00001329246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000307695,0.0001298305,0.000155035,0.00005730422,0.00000359986,3.887817e-7,0.00001506866,0.00008465999,0.997087,0.002154991,0.0001073182,0.0001740047],"study_design_scores_gemma":[0.0002573997,0.00002263051,0.01085407,0.000006988507,0.00000401876,0.000002743947,0.00001299739,0.00006379593,0.9759082,0.01220549,0.0005454951,0.0001161991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956917,0.00002540519,0.002436309,0.00008582643,0.00001018444,0.0003753873,0.0001035816,0.00005873189,0.001212911],"genre_scores_gemma":[0.9868429,0.000008698676,0.01232441,0.00002061986,0.00008524561,0.0001267931,0.000355406,0.00001784007,0.0002181371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02117886,"threshold_uncertainty_score":0.4867662,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054003354","doi":"10.1159/000324505","title":"Evolution of Patchily Distributed Proteins Shared between Eukaryotes and Prokaryotes: Dictyostelium as a Case Study","year":2011,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Dalhousie University; Vetenskapsrådet; Joint Genome Institute","keywords":"Biology; Prokaryote; Phylogenetic tree; Evolutionary biology; Polyphyly; Horizontal gene transfer; Dictyostelium discoideum; Phylogenetics; Gene; Genome; Dictyostelium; Ecology; Genetics; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.01712195099330805,"gpt":0.2233298501840427,"spread":0.2062078991907346,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009477732,0.0001717321,0.0002513094,0.00004108941,0.0001218086,0.00000590953,0.0001731467,0.000173849,0.00002771577],"category_scores_gemma":[0.00004204957,0.0001680225,0.00006758875,0.0000850902,0.0002020364,0.00000712898,0.0003242688,0.0001022289,0.000008388971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001408607,"about_ca_system_score_gemma":0.0000685308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002344917,"about_ca_topic_score_gemma":0.0001647597,"domain_scores_codex":[0.9989615,0.0001534059,0.0002127468,0.0003979128,0.00004745026,0.0002270035],"domain_scores_gemma":[0.9994276,0.00001067434,0.000123669,0.0002757008,0.00009199074,0.0000703917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003150498,0.0003620317,0.1334534,0.00004405576,0.0001361995,0.00005754537,0.0007155853,0.000001061502,0.864558,0.00001939196,0.0001713092,0.0001663897],"study_design_scores_gemma":[0.001738936,0.003700274,0.7334321,0.00002046039,0.0001184361,0.0002889852,0.001012229,0.000002435273,0.2584512,0.0007583986,0.0001298516,0.0003466805],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980282,0.0001416524,0.0002534398,0.00001166377,0.0000548788,0.000833905,0.0006155923,0.00001380767,0.00004690422],"genre_scores_gemma":[0.9992448,0.000006119062,0.0002055318,0.0000295885,0.0001264592,0.00002393113,0.0003290863,0.00001228055,0.00002219378],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6061068,"threshold_uncertainty_score":0.6851758,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970767092","doi":"10.1159/000082075","title":"Salt in the Wound: A Possible Role of Na<sup>+</sup> Gradient in Chlamydial Infection","year":2004,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"","keywords":"Molecular biology; Biology; Intracellular; Chemistry; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02184639606474763,"gpt":0.3032987099997016,"spread":0.281452313934954,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.001297553,0.0007958464,0.002528181,0.001509662,0.0002405456,0.00003319981,0.0009451526,0.001556891,0.0003822449],"category_scores_gemma":[0.0003637103,0.0006097023,0.0007896291,0.001722191,0.001019739,0.0001771622,0.0003643536,0.002589855,0.001071191],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008324196,"about_ca_system_score_gemma":0.0009977644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002829094,"about_ca_topic_score_gemma":0.0009876579,"domain_scores_codex":[0.9929681,0.002912071,0.001488853,0.001326389,0.000101602,0.001202958],"domain_scores_gemma":[0.997362,0.0005567851,0.0006134905,0.001243543,0.0001876917,0.00003647661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006104877,0.004298941,0.0002164652,0.00682068,0.0009698818,0.00003336768,0.002439023,0.0005560556,0.7726653,0.002439861,0.001702182,0.2072478],"study_design_scores_gemma":[0.002215627,0.0009999038,0.004552281,0.00297495,0.0002668939,0.0007788134,0.00005903644,0.000001392907,0.003816322,0.001389664,0.9820825,0.0008626424],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.215013,0.7799727,0.000005246428,0.00006059577,0.00112107,0.002884956,0.0001573815,0.00006810059,0.0007170214],"genre_scores_gemma":[0.1204517,0.8766739,0.00002414406,0.00005604197,0.0004018766,0.0006572406,0.001178854,0.0001163131,0.000439868],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9803803,"threshold_uncertainty_score":0.9997393,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058727950","doi":"10.1159/000366281","title":"Psychobiotics and Their Involvement in Mental Health","year":2014,"lang":"en","type":"editorial","venue":"Microbial Physiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Microbiome; Gut bacteria; Bacteria; Probiotic; Biology; Chemistry; Bioinformatics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.005716595457004235,"gpt":0.2584143035358956,"spread":0.2526977080788914,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003175774,0.0004321991,0.0006631081,0.0001028658,0.0001176898,0.00002010522,0.0002912986,0.0009990019,0.00001427221],"category_scores_gemma":[0.00003212721,0.0003954635,0.000107134,0.00006284859,0.0001884801,0.000001871091,0.0002969453,0.0005464912,0.00001802139],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000942494,"about_ca_system_score_gemma":0.000441283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003233095,"about_ca_topic_score_gemma":0.001671067,"domain_scores_codex":[0.9977537,0.0002486198,0.0004736977,0.000846298,0.00006401273,0.0006136107],"domain_scores_gemma":[0.9990938,0.00002859455,0.0002502925,0.0004463596,0.00005656069,0.0001243584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007844575,0.00006018794,0.000006416269,0.0001250264,0.00002166504,1.357453e-7,0.0001074835,8.606735e-7,0.4656832,0.000003526698,0.5336288,0.0002843234],"study_design_scores_gemma":[0.001239703,0.0007113284,0.0002711295,0.00009107447,0.000003996558,0.000003292071,0.00004265434,0.000001934715,0.004599522,0.00005038712,0.9926398,0.0003451387],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"editorial","genre_scores_codex":[0.2126852,0.004246645,0.00004556039,0.001300868,0.7791309,0.001061855,0.001390255,0.00002822555,0.0001104738],"genre_scores_gemma":[0.06226486,0.01394408,0.0004641908,0.005298381,0.8940486,0.00003411839,0.02268771,0.0001942888,0.001063746],"genre_candidate":"editorial","genre_consensus":"editorial","teacher_disagreement_score":0.4610836,"threshold_uncertainty_score":0.9998497,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037990409","doi":"10.1159/000103597","title":"Identification of a Ribosomal L10-Like Protein from <i>Flavobacterium psychrophilum</i> as a Recombinant Vaccine Candidate for Rainbow Trout Fry Syndrome","year":2007,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Escherichia coli; Recombinant DNA; Fusion protein; Microbiology; Virulence; Molecular biology; Gene; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.005306731545546887,"gpt":0.2236595197708174,"spread":0.2183527882252705,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004530942,0.0005572179,0.0009701984,0.0002794649,0.0003131369,0.00002731354,0.0006857321,0.0006222872,0.0006304737],"category_scores_gemma":[0.00007047501,0.0005197472,0.0004489949,0.0002880878,0.0003376708,0.0001672892,0.0002539376,0.0002833585,0.0006775371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001139859,"about_ca_system_score_gemma":0.0000921126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002254224,"about_ca_topic_score_gemma":0.0002724153,"domain_scores_codex":[0.9965317,0.0002512669,0.001160438,0.001035416,0.00005323978,0.0009679975],"domain_scores_gemma":[0.9980442,0.0001029756,0.000772874,0.0007688999,0.0002351122,0.00007593733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003060572,0.0006421456,0.00003537387,0.0001173467,0.0006713757,0.00001592369,0.0002784796,0.000001559238,0.9706114,0.001054325,0.02297829,0.0005332485],"study_design_scores_gemma":[0.008390811,0.00102119,0.040581,0.000165773,0.0004672685,0.00008369158,0.00007833861,0.000003072156,0.8063766,0.001671847,0.1402612,0.0008991872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992356,0.001130985,0.000452513,0.0004248795,0.002161537,0.002161137,0.001086717,0.0001303146,0.00009593314],"genre_scores_gemma":[0.9870418,0.00005098578,0.0001705257,0.0003658891,0.0001797395,0.0001239386,0.005729147,0.00007125329,0.00626671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1642348,"threshold_uncertainty_score":0.9997254,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052353221","doi":"10.1159/000077249","title":"Lipopolysaccharide O-Antigen Antibody-Based Detection of the Fish Pathogen <i>Flavobacterium psychrophilum</i>","year":2003,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences; University of Victoria","funders":"","keywords":"Polyclonal antibodies; Microbiology; Antibody; Antigen; Biology; Keyhole limpet hemocyanin; Flavobacterium; Direct agglutination test; Bovine serum albumin; Pathogen; Agglutination (biology); Bacteria; Immunology; Serology","retraction":null,"screen_n_in":null,"score":{"opus":0.00625487515063883,"gpt":0.2120298297623161,"spread":0.2057749546116773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002325292,0.000464826,0.000612117,0.0001490882,0.0004152465,0.00002048084,0.0006667556,0.0005061876,0.0008037951],"category_scores_gemma":[0.00007796379,0.0003613834,0.0005267435,0.0003259386,0.0007022239,0.00009298845,0.0001846813,0.0003296615,0.0004251379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005995229,"about_ca_system_score_gemma":0.0001094652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003353666,"about_ca_topic_score_gemma":0.0001180773,"domain_scores_codex":[0.9973489,0.0005678928,0.0005914439,0.0007121611,0.00005313143,0.0007264417],"domain_scores_gemma":[0.9984485,0.00005526732,0.0004374451,0.0008551443,0.0001606111,0.00004301863],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002557463,0.0003105768,0.0001541723,0.00005984733,0.0002646849,0.000002357473,0.00007954703,0.00001504911,0.9883776,0.001230962,0.008915205,0.0003342219],"study_design_scores_gemma":[0.001319408,0.0001181814,0.01068969,0.0000349016,0.0001374072,0.00001680647,0.00001638844,0.000001225687,0.7454755,0.0001223117,0.2417399,0.0003283248],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994022,0.0007862775,0.0003594977,0.0002380345,0.002504124,0.000717165,0.0003761674,0.0001095085,0.0008872012],"genre_scores_gemma":[0.9968026,0.00007335319,0.00005758253,0.001123576,0.0001213233,0.00002394986,0.0005533252,0.0000502667,0.00119399],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2429022,"threshold_uncertainty_score":0.9998838,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4309878746","doi":"10.1159/000528257","title":"Optimization of Cultural Conditions for Pectinase Production by <b><i>Streptomyces</i></b> sp. and Characterization of Partially Purified Enzymes","year":2022,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pectinase; Yeast extract; Chemistry; Fermentation; Pectin; Streptomyces; Enzyme; Food science; Polyacrylamide gel electrophoresis; Crystal violet; Chromatography; Biochemistry; Bacteria; Biology; Microbiology","retraction":null,"screen_n_in":null,"score":{"opus":0.01059300041941834,"gpt":0.2118408163058139,"spread":0.2012478158863956,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002647002,0.0002758366,0.0004518012,0.0000626421,0.0005114833,0.00003421592,0.0002457099,0.0001845606,0.0004162611],"category_scores_gemma":[0.0001575684,0.0001693748,0.0001410102,0.000524288,0.0002764619,0.0003612177,0.0001289468,0.0001367273,0.000004482547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006743677,"about_ca_system_score_gemma":0.0000372407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002337685,"about_ca_topic_score_gemma":0.0001448889,"domain_scores_codex":[0.9978208,0.0003236424,0.0006372645,0.0006468243,0.0002017791,0.0003696785],"domain_scores_gemma":[0.9985927,0.0001298577,0.0006987386,0.0001375788,0.0003612342,0.00007989431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002649681,0.000329185,0.00005882544,0.00004027094,0.00004467057,4.340966e-7,0.0002415109,0.001618081,0.9890981,0.0006414556,0.006955536,0.0007069947],"study_design_scores_gemma":[0.0010994,0.001263829,0.0351554,0.00003448987,0.0001333194,0.00002332279,0.0001598139,0.001259378,0.9361275,0.0002422668,0.02396294,0.0005383518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952559,0.0001897115,0.00007299707,0.001022659,0.0005987757,0.0009751891,0.001759995,0.00008897037,0.00003580515],"genre_scores_gemma":[0.9809013,0.0001792153,0.0002080542,0.0001031192,0.0004316626,0.0001932101,0.01758087,0.000007319134,0.0003952306],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05297059,"threshold_uncertainty_score":0.6906903,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1504962413","doi":"10.1159/000121330","title":"Use of<i> Mycobacterium austroafricanum</i> IFP 2012 in a MTBE-Degrading Bioreactor","year":2008,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Chemistry; Biofilter; Biodegradation; Effluent; Biomass (ecology); Environmental chemistry; Methyl tert-butyl ether; Chromatography; Pulp and paper industry; Environmental engineering; Ether; Environmental science; Organic chemistry; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.04207841450784138,"gpt":0.2650878910194092,"spread":0.2230094765115678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000161544,0.00035032,0.0009608968,0.0004706149,0.00008564127,0.00001499191,0.0002408739,0.000305006,0.000836811],"category_scores_gemma":[0.0003952464,0.0003122989,0.0002613231,0.0005519955,0.0004838823,0.0002908942,0.0001932721,0.0004027699,0.0002400423],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001755003,"about_ca_system_score_gemma":0.0002858385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003419505,"about_ca_topic_score_gemma":0.0001021678,"domain_scores_codex":[0.9974028,0.0002176387,0.0006054897,0.0005832458,0.0002158487,0.0009749833],"domain_scores_gemma":[0.9983341,0.0003396739,0.0001904063,0.000598103,0.0001821339,0.0003555897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009824116,0.0005730324,0.009520853,0.0001100027,0.00007706291,0.0001315114,0.0002305145,0.000002528959,0.9467108,0.00009349763,0.04124295,0.0003248667],"study_design_scores_gemma":[0.002519894,0.0008521398,0.7019012,0.0001890942,0.00005947948,0.0002053577,0.00001192153,0.00002074197,0.1730845,0.00003174306,0.1207327,0.0003912966],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997756,0.0003155811,0.000009007445,0.000425071,0.0003487605,0.0005147114,0.0001920524,0.00006608852,0.0003727031],"genre_scores_gemma":[0.9964067,0.0007228086,0.0007262929,0.000350277,0.0005124437,0.0000463755,0.0002491602,0.00005207362,0.0009338249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7736263,"threshold_uncertainty_score":0.9999329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994065931","doi":"10.1159/000078654","title":"Expression and Purification of Heterologous Proteins in Plant Tissue Using a Geminivirus Vector System","year":2004,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Toronto","keywords":"Biology; Arabidopsis; Insert (composites); Plant virus; Heterologous expression; Heterologous; Expression vector; Arabidopsis thaliana; RNA; Computational biology; Genetics; Gene; Virus; Cell biology; Recombinant DNA","retraction":null,"screen_n_in":null,"score":{"opus":0.03060143720070252,"gpt":0.2484541633435549,"spread":0.2178527261428524,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009195619,0.00008891812,0.0002137549,0.00001965191,0.00007537018,0.000006701788,0.0001086018,0.0000843587,0.000006051959],"category_scores_gemma":[0.00002277406,0.00003719778,0.00001922751,0.0001024116,0.0001033287,0.00004348822,0.00009670749,0.00008183003,0.000004848766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004226277,"about_ca_system_score_gemma":0.000007747139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001256348,"about_ca_topic_score_gemma":0.0004804719,"domain_scores_codex":[0.9992552,0.00009058476,0.000169181,0.0002208708,0.00005543799,0.0002087181],"domain_scores_gemma":[0.99978,0.00005428213,0.00007780653,0.00003861216,0.00002075614,0.00002852095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001059278,0.0000502447,0.00005623778,0.00003515301,0.000003976087,0.000004822716,0.00009953328,0.00002739072,0.9991432,0.00002648453,0.00001676723,0.0004302344],"study_design_scores_gemma":[0.0002413677,0.0002292074,0.03803213,0.0001005166,0.00000240828,0.00001950572,0.00008197063,0.00002015798,0.9609154,0.0000499188,0.0002248145,0.00008264967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991701,0.0001401367,0.000002802891,0.00007411459,0.00003724963,0.0003043991,0.0002422317,0.00001824725,0.00001075794],"genre_scores_gemma":[0.9996542,0.00003186628,0.000159864,0.000015656,0.00006733937,0.00001549023,0.0000514968,6.660538e-7,0.000003412929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03822787,"threshold_uncertainty_score":0.1899231,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2226779795","doi":"10.1159/000439170","title":"Newly Isolated <b><i>Penicillium ramulosum</i></b> N1 Is Excellent for Producing Protease-Resistant Acidophilic Xylanase","year":2015,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"Natural Science Foundation of Zhejiang Province","keywords":"Xylanase; Cellulase; Food science; Carboxymethyl cellulose; Protease; Cellulose; Chemistry; Penicillium; Straw; Enzyme; Microorganism; Strain (injury); Biochemistry; Biology; Bacteria; Sodium; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01633766759366524,"gpt":0.214847707846115,"spread":0.1985100402524498,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005603795,0.0008338941,0.000947182,0.0003228537,0.0003491926,0.00008694654,0.0006545244,0.0006669469,0.0003388072],"category_scores_gemma":[0.0001368171,0.0007994939,0.0004161143,0.0005320986,0.0002813984,0.000289268,0.0002805143,0.0004791098,0.0006956719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004428543,"about_ca_system_score_gemma":0.0002077539,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004135657,"about_ca_topic_score_gemma":0.00006309288,"domain_scores_codex":[0.9957731,0.0002104557,0.0009386135,0.001473051,0.0002935857,0.001311217],"domain_scores_gemma":[0.997606,0.00005392468,0.000271975,0.001194668,0.0004258354,0.0004476053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009688786,0.0002139873,0.000002206034,0.0005500624,0.0001641953,0.00001009411,0.0005616957,0.001156845,0.8227718,0.00005678174,0.172707,0.0008364347],"study_design_scores_gemma":[0.003425585,0.0007348594,0.0002077895,0.0001042032,0.0001303998,0.00003571383,0.00003558715,0.004314397,0.400286,0.0002912284,0.5893651,0.001069106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9827077,0.003275725,0.0007831295,0.002764151,0.004858693,0.003665725,0.0003834962,0.0009995942,0.0005617703],"genre_scores_gemma":[0.9918805,0.0002581839,0.001156358,0.0007069581,0.002313606,0.0001891682,0.0004974123,0.0001938775,0.002803883],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4224858,"threshold_uncertainty_score":0.9994456,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2750727004","doi":"10.1159/000478859","title":"Overexpression of a Laccase with Dye Decolorization Activity from <b><i>Bacillus</i></b> sp. Induced in <b><i>Escherichia coli</i></b>","year":2017,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Laccase; ABTS; Escherichia coli; Chemistry; Enzyme; Substrate (aquarium); Multicopper oxidase; Bacteria; Biochemistry; Nuclear chemistry; Molecular biology; Biology; Antioxidant; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01654221096424003,"gpt":0.2262949075685371,"spread":0.2097526966042971,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.001424374,0.002248138,0.003089148,0.0004350767,0.001989422,0.0005257483,0.003102061,0.002798,0.001364693],"category_scores_gemma":[0.001425488,0.001435147,0.0008406293,0.002026305,0.001506401,0.002198653,0.001687624,0.001521686,0.0005225897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008954873,"about_ca_system_score_gemma":0.0005379117,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007270116,"about_ca_topic_score_gemma":0.02251871,"domain_scores_codex":[0.9874546,0.002032596,0.002438815,0.003708205,0.001448235,0.002917546],"domain_scores_gemma":[0.9913282,0.001415841,0.003373312,0.001862472,0.001059867,0.0009603406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002725572,0.001942004,0.0006118856,0.0001287673,0.0003036995,0.00008292842,0.0005998967,0.0003177267,0.9746557,0.0009365726,0.01228477,0.005410471],"study_design_scores_gemma":[0.008024629,0.003220274,0.4257251,0.0009371611,0.0004742923,0.00005456066,0.0000847242,0.001470026,0.4751536,0.001179115,0.07987516,0.003801414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888616,0.0007144492,0.00008080682,0.001292318,0.002108142,0.002914586,0.001927037,0.0005140374,0.001586973],"genre_scores_gemma":[0.9899568,0.0008029223,0.0007983837,0.0006765562,0.002247798,0.0003640126,0.004007621,0.0001070715,0.001038819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4995022,"threshold_uncertainty_score":0.9995482,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2608236811","doi":"10.1159/000452952","title":"Expression and Characterization of Serotype 2 <b><i>Streptococcus suis </i></b>Arginine Deiminase","year":2017,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Thailand Graduate Institute of Science and Technology; National Research Council of Thailand; Thammasat University; Thailand Research Fund","keywords":"Chemistry; Recombinant DNA; Molecular biology; Arginine; Enzyme; Biology; Biochemistry; Amino acid; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01548621972567164,"gpt":0.2681736755773889,"spread":0.2526874558517173,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001298831,0.0004852992,0.0009263035,0.0002146041,0.0005278818,0.00005186728,0.0002419428,0.0004188481,0.0007037481],"category_scores_gemma":[0.0001450272,0.0004168591,0.0002263144,0.0001552623,0.0005064808,0.0002614108,0.0003067868,0.0002206663,0.0001470915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009286354,"about_ca_system_score_gemma":0.0001235496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004162459,"about_ca_topic_score_gemma":0.00005602958,"domain_scores_codex":[0.9977202,0.0001332321,0.0006138533,0.0008013184,0.0001565044,0.0005749132],"domain_scores_gemma":[0.9976693,0.00008016626,0.0006156429,0.001101296,0.0002838386,0.0002497313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006524225,0.0007406381,0.00739983,0.0001403576,0.0001861766,0.00003484812,0.0001533625,0.000002978199,0.9846359,0.0001719137,0.0024483,0.003433205],"study_design_scores_gemma":[0.004192714,0.0009492125,0.5264296,0.0002881521,0.0002323456,0.00004728442,0.000004821185,0.00005289445,0.4379138,0.00008836414,0.02947507,0.0003256876],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99607,0.0001726832,0.00005080949,0.0003202517,0.0006940986,0.001290675,0.0002295962,0.00009810498,0.00107384],"genre_scores_gemma":[0.9955001,0.0002845747,0.0002483554,0.0001315878,0.0005928928,0.000152115,0.0009288154,0.00006642444,0.002095116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5467221,"threshold_uncertainty_score":0.9998283,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059271401","doi":"10.1159/000142896","title":"Rapid Access to Genes of Biotechnologically Useful Enzymes by Partial Genome Sequencing: The Thermoalkaliphile <i>Anaerobranca gottschalkii</i>","year":2008,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Genome Alberta; Genome Canada; Deutsche Bundesstiftung Umwelt","keywords":"Gene; Pullulanase; Genome; Contig; Biology; DNA sequencing; Whole genome sequencing; Sequence assembly; Computational biology; Shotgun sequencing; Enzyme; Genetics; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.01966606491771329,"gpt":0.2242346346461233,"spread":0.20456856972841,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001278123,0.0002582748,0.0003090202,0.00006438939,0.000216766,0.00001858847,0.0006687664,0.0003462855,0.0001481828],"category_scores_gemma":[0.00005660926,0.0001988446,0.0001393202,0.0002380933,0.0003968056,0.00001396224,0.000336339,0.0001292211,0.00003406496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002218006,"about_ca_system_score_gemma":0.00008376421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008116759,"about_ca_topic_score_gemma":0.00001106651,"domain_scores_codex":[0.9983962,0.0001560249,0.0003758939,0.0006032441,0.00009679968,0.0003718077],"domain_scores_gemma":[0.9989685,0.00001039841,0.0002057203,0.0006022253,0.0001425513,0.00007053708],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001568142,0.00008650895,0.00002812897,0.00001251262,0.00006019278,0.000001217838,0.00006632124,0.0000946115,0.9870837,0.0001539553,0.01169587,0.000560107],"study_design_scores_gemma":[0.0002350674,0.0002357535,0.002752528,0.000003485,0.00001126922,0.00002350765,0.000006066586,0.000003760324,0.7204031,0.00001480147,0.2761329,0.0001777707],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947336,0.001954709,0.0006215349,0.001750701,0.0002964819,0.0003730094,0.0001138928,0.00005023064,0.0001058109],"genre_scores_gemma":[0.9948713,0.001651509,0.0001498139,0.001703446,0.0005782162,0.00004652003,0.0004483058,0.00003385603,0.000516991],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2666806,"threshold_uncertainty_score":0.8108646,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4380870296","doi":"10.1159/000531468","title":"Sequence Similarity among Structural Repeats in the Piezo Family of Mechanosensitive Ion Channels","year":2023,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Erythrocyte Function and Pathophysiology","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University","funders":"National Institute of General Medical Sciences; University of California, San Diego; National Institutes of Health","keywords":"Genetics; Structural similarity; Biology; Direct repeat; Similarity (geometry); Sequence (biology); Computational biology; Repeated sequence; Sequence alignment; Peptide sequence; Genome; Gene; Biochemistry; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.0407184670359137,"gpt":0.2909483499033252,"spread":0.2502298828674115,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002336123,0.0001620271,0.0004319035,0.0001552239,0.00007175353,0.000003597454,0.0001242526,0.0001993919,0.00004131303],"category_scores_gemma":[0.0000976469,0.0001150123,0.0001219378,0.0004986041,0.0003034417,0.00004664668,0.00007817368,0.0003406841,0.00005402831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000350889,"about_ca_system_score_gemma":0.00005642094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002995734,"about_ca_topic_score_gemma":0.00005154424,"domain_scores_codex":[0.9986328,0.000312784,0.0002916409,0.0003476787,0.00009352555,0.0003215347],"domain_scores_gemma":[0.9992737,0.0001535066,0.0001167491,0.0003168499,0.0001012601,0.00003792711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003768651,0.00002993037,0.0002853156,0.00004840887,0.00002157551,0.0000543638,0.001030207,0.000132384,0.9957279,0.0001837482,0.001822186,0.0002871206],"study_design_scores_gemma":[0.002052176,0.001042383,0.8201337,0.0001223502,0.00005206756,0.0001166758,0.001467085,0.001261643,0.1686944,0.004254744,0.0005287508,0.0002740603],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978781,0.00001803578,0.000009936923,0.0005314955,0.0008937736,0.0003608079,0.00003314069,0.00005865456,0.0002160084],"genre_scores_gemma":[0.9972849,0.00004374586,0.00003988941,0.001877096,0.0003623099,0.0000117809,0.0002372314,0.00001328714,0.0001297237],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8270335,"threshold_uncertainty_score":0.4690064,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404839367","doi":"10.1159/000542892","title":"Hub Metabolites Promote the Bioflocculant Production in a Biomass-Degrading Bacterium Pseudomonas boreopolis GO2","year":2024,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Coagulation and Flocculation Studies","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lakehead University","funders":"National Natural Science Foundation of China","keywords":"Fermentation; Biomass (ecology); Metabolome; Food science; Bacteria; Pseudomonas; Chemistry; Biochemistry; Tryptophan; Metabolism; Yield (engineering); Biotechnology; Biology; Amino acid; Metabolite; Agronomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01369923349379897,"gpt":0.245935846694805,"spread":0.232236613201006,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002021779,0.0001530064,0.0001780033,0.00007966297,0.0001487791,0.00004479215,0.0001385413,0.00005886699,0.000473798],"category_scores_gemma":[0.00003041561,0.000102818,0.00008031054,0.0005721981,0.0002758226,0.0001524336,0.0001827783,0.000128654,0.0003653245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000884918,"about_ca_system_score_gemma":0.00001065409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006145099,"about_ca_topic_score_gemma":0.000401188,"domain_scores_codex":[0.9989039,0.00009771017,0.000235782,0.0004190545,0.00007777526,0.0002657781],"domain_scores_gemma":[0.9996808,0.00003158016,0.00004209776,0.0002089,0.000008636547,0.00002799865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001660723,0.00003152905,0.001837874,0.00001658222,0.00001649456,0.000001831967,0.0007847691,0.00009557886,0.9916113,0.0001652839,0.002906288,0.002515882],"study_design_scores_gemma":[0.0003180541,0.00004607633,0.6440371,0.0000451661,0.00004634908,0.00004404055,0.0001740215,0.002521659,0.1320937,0.002321566,0.217929,0.0004232231],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956784,0.0002950528,0.00004114155,0.002334188,0.0007694134,0.0003109661,0.00001458997,0.00008753929,0.000468732],"genre_scores_gemma":[0.998787,0.00003290189,0.0002118696,0.0001729759,0.0002428602,0.00002955352,0.00002933979,0.00001346371,0.0004799895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8595176,"threshold_uncertainty_score":0.5187756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4328050829","doi":"10.1159/000530228","title":"Characterization of Potential Virulence, Resistance to Antibiotics and Heavy Metals, and Biofilm-Forming Capabilities of Soil Lignocellulolytic Bacteria","year":2023,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Lakehead University","funders":"","keywords":"Biofilm; Microbiology; Virulence; Bacteria; Biology; Antibiotic resistance; Protease; Ciprofloxacin; Chemistry; Antibiotics; Biochemistry; Gene; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.006448542417834464,"gpt":0.2048435869156218,"spread":0.1983950444977873,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001129051,0.0001385315,0.0002883601,0.00007698811,0.00005639227,0.00001136903,0.00007027712,0.0001442973,0.000005157417],"category_scores_gemma":[0.00003257457,0.0001359463,0.00004571351,0.0001245748,0.0002271189,0.000007930413,0.0001643764,0.0000389072,0.000002008801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003913985,"about_ca_system_score_gemma":0.00002742848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003789845,"about_ca_topic_score_gemma":0.00003017091,"domain_scores_codex":[0.9991101,0.00005357356,0.0002846119,0.0002999371,0.00003837556,0.0002134273],"domain_scores_gemma":[0.9995613,0.00001004926,0.000130932,0.0001782218,0.00007232741,0.00004722585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000309491,0.00001806829,0.00005034032,0.0001571184,0.00002902678,5.979922e-7,0.00009477503,0.000004271297,0.9990219,0.0000376934,0.00005540868,0.0002212872],"study_design_scores_gemma":[0.0002185166,0.0001838596,0.01578202,0.00003933596,0.0000195123,0.000005055962,0.00004878702,0.00001899247,0.9828554,0.0000190101,0.0006755947,0.0001339098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992621,0.00005308165,0.00002651358,0.00009764064,0.0002283483,0.0001376282,0.0001719495,0.000009781889,0.00001299097],"genre_scores_gemma":[0.9987471,0.0002447848,0.0003678662,0.00007056753,0.0001312111,3.902868e-7,0.0002663041,0.00001617819,0.0001556764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01616651,"threshold_uncertainty_score":0.5543728,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2915551285","doi":"10.1159/000495752","title":"Production of Polyhydroxyalkanoates Copolymers by Recombinant <b><i>Pseudomonas</i></b> in Plasmid- and Antibiotic-Free Cultures","year":2018,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Polyhydroxyalkanoates; Pseudomonas; Plasmid; Ralstonia; Recombinant DNA; Aeromonas hydrophila; Cupriavidus necator; Chemistry; Biology; Molecular biology; Microbiology; Bacteria; Gene; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.009323917196460287,"gpt":0.212240869421693,"spread":0.2029169522252327,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005680633,0.0005861565,0.001035732,0.0002248204,0.0004285827,0.00009542855,0.0008027972,0.0004517183,0.0003966252],"category_scores_gemma":[0.0002207358,0.0004637723,0.0001511055,0.0003584582,0.002063626,0.0003741639,0.0004477387,0.0002013218,0.0001286686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007854508,"about_ca_system_score_gemma":0.0001231307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004541536,"about_ca_topic_score_gemma":0.0008383856,"domain_scores_codex":[0.9961738,0.0004991016,0.0008845066,0.00120104,0.0002545154,0.0009870599],"domain_scores_gemma":[0.9982275,0.0001220749,0.0004748919,0.0008504606,0.0001719333,0.0001531611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006456475,0.0003456445,0.00005547684,0.0001410988,0.00004979519,0.000002722413,0.0007868037,0.000002216731,0.9392373,0.0003832144,0.05691831,0.001431762],"study_design_scores_gemma":[0.0009842217,0.0006273224,0.001275198,0.0001935393,0.00005764981,0.00004075477,0.00004824256,0.00003489146,0.9728782,0.0003896792,0.02289184,0.0005784245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9809747,0.0137362,0.000005466477,0.001333695,0.002760581,0.0004321744,0.0001913388,0.0001002833,0.0004655385],"genre_scores_gemma":[0.9962364,0.001087338,0.0004757829,0.000256958,0.0004461989,0.00001795793,0.00005938677,0.00006272773,0.001357212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03402647,"threshold_uncertainty_score":0.9997814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020204572","doi":"10.1159/000320268","title":"Determination of <i>Francisella tularensis</i> AcpB Acid Phosphatase Substrate Preferences","year":2010,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Francisella tularensis; Francisella; Thiamine; Biochemistry; Phosphatase; Enzyme; Substrate (aquarium); Biology; Microbiology; Phosphorylation; Pathogen; Intracellular; Chemistry; Virulence; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.009465775425706206,"gpt":0.2382815031838698,"spread":0.2288157277581636,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002495626,0.0002621996,0.0003611469,0.00006982414,0.0001130987,0.0000255125,0.0004440323,0.0004392925,0.0003152755],"category_scores_gemma":[0.0001247985,0.0002416926,0.000164126,0.0001351628,0.0004469557,0.00001068258,0.0001838332,0.0002125111,0.00006279278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008441954,"about_ca_system_score_gemma":0.0001429235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001971145,"about_ca_topic_score_gemma":0.0004153228,"domain_scores_codex":[0.9983235,0.0001156862,0.0003846472,0.0005610111,0.000131334,0.0004838486],"domain_scores_gemma":[0.9988092,0.00002555186,0.000184599,0.0005483803,0.0003045709,0.000127764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004247701,0.0001186716,0.00003935179,0.00004724294,0.00003101194,0.000002437568,0.00003818256,0.000002360414,0.9868414,0.0002067462,0.001092307,0.01115553],"study_design_scores_gemma":[0.0007311376,0.0003479717,0.006704611,0.000009473545,0.00001879059,0.00001104929,0.000003292938,0.00002406654,0.9619305,0.0003045273,0.02966385,0.000250706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973187,0.0005658567,0.0002173775,0.00003873913,0.0007436823,0.0002632147,0.0002732145,0.00001482788,0.0005643409],"genre_scores_gemma":[0.9973021,0.0002579424,0.0008744962,0.0000811766,0.0004801305,0.00002106459,0.0007541396,0.00002974335,0.000199184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02857155,"threshold_uncertainty_score":0.9855936,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2607620934","doi":"10.1159/000467401","title":"Science, Innovation and the Future of Humanity","year":2017,"lang":"en","type":"editorial","venue":"Microbial Physiology","topic":"Innovation, Sustainability, Human-Machine Systems","field":"Social Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"National Institute of General Medical Sciences","keywords":"Humanity; Environmental ethics; Engineering ethics; Sociology; Biology; Political science; Philosophy; Engineering; Law","retraction":null,"screen_n_in":null,"score":{"opus":0.009413531448467976,"gpt":0.3209343465825993,"spread":0.3115208151341314,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.005977984,0.0002320221,0.0006222023,0.0004748611,0.003028152,0.0001862199,0.001379429,0.000680637,0.00003524915],"category_scores_gemma":[0.004305798,0.0001722958,0.00007760666,0.000964693,0.01139814,0.0002876715,0.0003674501,0.0007544523,0.000005036536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002776912,"about_ca_system_score_gemma":0.003510676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006541872,"about_ca_topic_score_gemma":0.003814565,"domain_scores_codex":[0.997201,0.0006755239,0.0005971458,0.0005252301,0.0005670483,0.0004340456],"domain_scores_gemma":[0.9941265,0.0004339679,0.00119025,0.0007071081,0.003515844,0.00002634749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009606229,0.00003228647,0.00001098507,0.0001480747,0.00002154912,2.404833e-7,0.005587455,6.316823e-7,0.008686638,0.3748673,0.6101459,0.0004028919],"study_design_scores_gemma":[0.0007339565,0.00004892229,0.0005889531,0.0000285415,0.0000211481,2.159273e-7,0.001272753,9.562608e-7,0.00006357933,0.03181915,0.965237,0.0001847953],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"editorial","genre_scores_codex":[0.1008797,0.0001741896,0.000005822559,0.0008171354,0.8834467,0.001106108,0.00008169383,0.00004602374,0.01344267],"genre_scores_gemma":[0.3396367,0.0000391363,0.00001469417,0.00004470309,0.6583216,0.00001718659,0.0001342394,0.00001672712,0.001775008],"genre_candidate":"editorial","genre_consensus":"editorial","teacher_disagreement_score":0.3550912,"threshold_uncertainty_score":0.9982698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4417467005","doi":"10.1159/000550112","title":"Comparative Genomics of Viral Genomes and Identification of Three Novel Viroporin-Like Superfamilies","year":2025,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Comparative genomics; Identification (biology); Genomics; Genome; Homology (biology); Sequence homology; DNA sequencing; Sequence alignment","retraction":null,"screen_n_in":null,"score":{"opus":0.01291098557931803,"gpt":0.2464909243232254,"spread":0.2335799387439074,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004766849,0.00009564118,0.000245278,0.00004085922,0.00006215389,0.000006195645,0.0001359997,0.00005582326,0.0001661175],"category_scores_gemma":[0.000003281719,0.00009307891,0.00005003018,0.00008817633,0.0005118797,0.00009000666,0.0001993897,0.00006985404,0.00002279013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004681015,"about_ca_system_score_gemma":0.00001215225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005813222,"about_ca_topic_score_gemma":0.0003297209,"domain_scores_codex":[0.9993369,0.00002064061,0.0002953816,0.0002078782,0.00002377787,0.0001154455],"domain_scores_gemma":[0.9996488,0.00002884318,0.0001280523,0.0001626429,0.00001616774,0.00001545558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005470339,0.000103512,0.000317985,0.0000173496,0.00003209194,5.838685e-8,0.0003730824,0.0001707181,0.9979649,0.0001608249,0.0003342305,0.0004705927],"study_design_scores_gemma":[0.0002377017,0.00004597424,0.3439376,0.000007041717,0.0000229916,0.00000199344,0.0001090227,0.00009159872,0.6515923,0.0002547146,0.003625713,0.0000733541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985334,0.0000785525,0.0004898607,0.00004676348,0.0002502853,0.0001409346,0.00007538629,0.000006683534,0.0003781228],"genre_scores_gemma":[0.9989181,0.00005535939,0.0005067447,0.00006879846,0.00001491066,0.000003687913,0.0000234226,0.000004329229,0.0004046592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3463725,"threshold_uncertainty_score":0.3795648,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}