{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":235,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":235,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"a86d5312dc5a","filters":{"venue":"Microbiome"}},"results":[{"id":"W2592244930","doi":"10.1186/s40168-017-0237-y","title":"Normalization and microbial differential abundance strategies depend upon data characteristics","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; National Center for Advancing Translational Sciences; National Human Genome Research Institute; National Institutes of Health; Centre Technologique des Résidus Industriels","keywords":"Relative species abundance; Normalization (sociology); Taxon; Biology; Abundance (ecology); Relative abundance distribution; Ecology; Statistics; Mathematics","retraction":null,"screen_n_in":null,"score":{"opus":0.02930268832581862,"gpt":0.2881221604850198,"spread":0.2588194721592011,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001235101,0.0001171327,0.0001101651,0.00002260304,0.0003582836,0.0006450759,0.0004832487,0.0001017079,0.00003753659],"category_scores_gemma":[0.00009671442,0.0001226563,0.0000201137,0.00001540827,0.00009316977,0.00003400956,0.0004907531,0.00004886072,0.0000124154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006009064,"about_ca_system_score_gemma":0.00004148599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006562856,"about_ca_topic_score_gemma":0.0003502832,"domain_scores_codex":[0.9991994,0.00003029031,0.0001874293,0.0003920376,0.00003734443,0.0001535086],"domain_scores_gemma":[0.9987456,0.0000029899,0.0001677072,0.0009780169,0.00006173149,0.00004400034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002745427,0.00002828001,0.002469343,0.00002963016,0.00001323315,9.019104e-7,0.00002754612,1.458138e-7,0.9952282,0.00004590229,0.0003340969,0.001795292],"study_design_scores_gemma":[0.001489382,0.000113973,0.4916717,0.00006966762,0.00007061422,0.0000912226,0.00009402164,0.0005097496,0.4499764,0.00006505377,0.05510056,0.0007477318],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969884,0.00004324447,0.001827185,0.0001071385,0.0004249977,0.0001045146,0.0004064154,0.00001414028,0.00008400415],"genre_scores_gemma":[0.9961454,0.00005904577,0.0004372184,0.00003225801,0.000235926,0.000001926197,0.002764123,0.00001426276,0.0003098005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5452518,"threshold_uncertainty_score":0.6220481,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3040245690","doi":"10.1186/s40168-020-00875-0","title":"Microbiome definition re-visited: old concepts and new challenges","year":2020,"lang":"en","type":"letter","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2160,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Bioinformatics Solutions (Canada); University of Waterloo","funders":"Horizon 2020; Agence Nationale de la Recherche; European Commission","keywords":"Biology; Microbiome; Microbial ecology; Medical microbiology; Computational biology; Evolutionary biology; Ecology; Bioinformatics; Genetics; Immunology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04846057888469046,"gpt":0.2738255376313257,"spread":0.2253649587466352,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001044934,0.00067303,0.0006291487,0.0002026335,0.0001597202,0.0001036494,0.0004207892,0.001570212,0.0001444185],"category_scores_gemma":[0.00002358019,0.0007106956,0.0002225355,0.0001650432,0.000233337,0.000007044453,0.0003472709,0.0009350243,0.0003146253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005809969,"about_ca_system_score_gemma":0.0002535692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009512083,"about_ca_topic_score_gemma":0.00004178679,"domain_scores_codex":[0.9971907,0.000141907,0.0004969608,0.001303223,0.0001119039,0.0007553562],"domain_scores_gemma":[0.99873,0.00002304683,0.0002811375,0.0006503609,0.00008661239,0.0002288123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001939669,0.00001187835,0.000004577276,0.0003007164,0.00006948494,0.00005757183,0.0001071802,2.736391e-8,0.4845414,0.000008020091,0.5143633,0.0005165381],"study_design_scores_gemma":[0.0009133238,0.000338426,0.00008805688,0.0001545559,0.00008197451,0.0002691186,0.00004101393,2.211395e-7,0.03255196,0.00008276883,0.9647214,0.0007571999],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.0150465,0.03838368,0.0001057894,0.9413325,0.000993707,0.0009211218,0.001485729,0.0001393041,0.001591727],"genre_scores_gemma":[0.005532143,0.01275623,0.002473661,0.94806,0.007262861,0.00002343341,0.01468716,0.0002686509,0.008935914],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.4519894,"threshold_uncertainty_score":0.9997259,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156975150","doi":"10.1186/2049-2618-2-15","title":"Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis","year":2014,"lang":"en","type":"article","venue":"Microbiome","topic":"Geochemistry and Geologic Mapping","field":"Computer Science","cited_by":1413,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Ontario Genomics","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Computational biology; RNA-Seq; Metagenomics; Deep sequencing; DNA sequencing; Microbiome; Genetics; Gene; Genome; Transcriptome; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.02728441816851818,"gpt":0.2509414988580768,"spread":0.2236570806895586,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000946195,0.0002525385,0.0005349418,0.0003442357,0.0004049831,0.0001957582,0.001596054,0.00008823948,0.00002539753],"category_scores_gemma":[0.00006729913,0.0002116893,0.0001085089,0.002753328,0.0001726611,0.0006270182,0.001265039,0.0001821337,0.000002760211],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001598616,"about_ca_system_score_gemma":0.00006640729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001285559,"about_ca_topic_score_gemma":0.00002581892,"domain_scores_codex":[0.9977641,0.0002238708,0.0004717614,0.0009164933,0.0002396802,0.0003840587],"domain_scores_gemma":[0.9978307,0.0002086484,0.0003950653,0.0013365,0.0001458312,0.0000832132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00000529576,0.00002372424,0.0006474311,0.00002376185,0.002018163,0.00000466203,0.0006923974,0.0004865362,0.9950407,0.0004330941,0.0004215996,0.0002026767],"study_design_scores_gemma":[0.0003769805,0.00003410057,0.004305223,0.00004107678,0.001668172,0.00004203184,0.0001995258,0.1263996,0.8652273,0.0004309343,0.0008011661,0.0004739441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6593946,0.000286183,0.3367701,0.001203288,0.00008637803,0.0001571481,0.001854104,0.00007957103,0.0001686281],"genre_scores_gemma":[0.9763661,0.0000187328,0.01770724,0.000455706,0.00003815932,0.000006616011,0.005374449,0.000004908093,0.00002808643],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3190628,"threshold_uncertainty_score":0.8632441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2952437732","doi":"10.1186/s40168-019-0704-8","title":"Macronutrient metabolism by the human gut microbiome: major fermentation by-products and their impact on host health","year":2019,"lang":"en","type":"review","venue":"Microbiome","topic":"Diet and metabolism studies","field":"Medicine","cited_by":1356,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Microbiome; Biology; Metabolism; Biochemistry; Microbial metabolism; Human health; Fermentation; Metabolite; Human microbiome; Bacteria; Bioinformatics; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.03589647946984997,"gpt":0.3532896805283702,"spread":0.3173932010585202,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006233778,0.00108392,0.00330482,0.0003825019,0.0004094937,0.0001290735,0.000341531,0.0002630614,0.00007053998],"category_scores_gemma":[0.0000215276,0.0005418709,0.000608157,0.0006798275,0.0002862903,0.00007744958,0.0002311553,0.0005698173,0.0002417775],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003545707,"about_ca_system_score_gemma":0.0003042787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001883499,"about_ca_topic_score_gemma":0.000002549843,"domain_scores_codex":[0.9968293,0.0002675006,0.0008877419,0.0009922691,0.0002002085,0.0008229468],"domain_scores_gemma":[0.998016,0.00006888569,0.0007047838,0.0008932478,0.0001109425,0.0002061395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004442861,0.0004377854,0.000004308884,0.0137672,0.001546445,0.000002873395,0.0009447724,5.3285e-9,0.1225046,0.00004693773,0.6123189,0.2483817],"study_design_scores_gemma":[0.00137592,0.0002815574,0.0002698503,0.003354929,0.001331986,0.0000884027,0.0001124069,2.758314e-8,0.0008528613,0.000003867012,0.9918438,0.0004843685],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004208421,0.9858461,0.000001998799,0.001559055,0.001012595,0.003641406,0.003497038,0.00006759688,0.0001657828],"genre_scores_gemma":[0.0005636904,0.9833036,0.00002908163,0.001140909,0.0004265274,0.0001182335,0.004347093,0.0001495687,0.009921285],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.3795249,"threshold_uncertainty_score":0.9997033,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2609646274","doi":"10.1186/s40168-017-0268-4","title":"A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: implications for research on the pioneer infant microbiome","year":2017,"lang":"en","type":"review","venue":"Microbiome","topic":"Historical Studies on Reproduction, Gender, Health, and Societal Changes","field":"Arts and Humanities","cited_by":1091,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; University of Alberta","funders":"National Institutes of Health; University of Alberta; National Institute of General Medical Sciences; Directorate for Biological Sciences; Nebraska Corn Board; Alberta Innovates; University of Calgary; Crohn's and Colitis Foundation; University of Nebraska-Lincoln; Crohn's and Colitis Foundation of America","keywords":"Biology; Microbiome; Colonization; Medical microbiology; Microbial ecology; In utero; Ecology; Pregnancy; Immunology; Bioinformatics; Genetics; Bacteria; Fetus","retraction":null,"screen_n_in":null,"score":{"opus":0.5314270902287395,"gpt":0.5001719707891518,"spread":0.0312551194395877,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001164004,0.0002315611,0.0007144964,0.0001676824,0.002087487,0.0001959243,0.0005114625,0.0001407914,0.00007594576],"category_scores_gemma":[0.0002571926,0.000128692,0.0002373013,0.0001544998,0.001306389,0.00005331393,0.0002006134,0.0003550492,0.00000886143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004087971,"about_ca_system_score_gemma":0.0002579443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001468182,"about_ca_topic_score_gemma":0.0004078946,"domain_scores_codex":[0.9981875,0.0003207942,0.0005068401,0.0004644553,0.0001379144,0.0003824414],"domain_scores_gemma":[0.997666,0.0009215973,0.0002256116,0.0007600454,0.000379533,0.00004719539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004972885,0.001999057,0.00006017158,0.06102362,0.0008473194,0.000003222525,0.07059151,6.695978e-7,0.0003246191,0.435122,0.3095723,0.1204059],"study_design_scores_gemma":[0.0000767147,0.00007883576,0.00008407391,0.001141042,0.00006151993,0.000006620274,0.0007238876,4.175602e-7,0.00000146956,0.0003306183,0.9973558,0.0001390674],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002502031,0.9808502,0.00001174876,0.009580993,0.001308575,0.003369991,0.001635681,0.00002199172,0.002970601],"genre_scores_gemma":[0.002441465,0.9841015,0.00006091376,0.0002632701,0.0007044946,0.001265046,0.00006565645,0.00005531235,0.01104231],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6877835,"threshold_uncertainty_score":0.9992117,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2794904294","doi":"10.1186/s40168-018-0420-9","title":"Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":771,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Clade; 16S ribosomal RNA; Taxon; Evolutionary biology; Genome; Phylogenetics; Microbiome; Genetics; Metagenomics; Microbial ecology; Ribosomal RNA; Amplicon; Amplicon sequencing; Gene; Computational biology; Ecology; Polymerase chain reaction; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01530621464605028,"gpt":0.2666623164609703,"spread":0.25135610181492,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008175851,0.0002742852,0.0002802076,0.0001111735,0.0001944573,0.00004561901,0.000308104,0.000202258,0.00001495912],"category_scores_gemma":[0.0000323219,0.0002856618,0.0001114677,0.0002277602,0.0001983338,0.000002314794,0.000157906,0.00007233487,0.00001979097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005027677,"about_ca_system_score_gemma":0.00008697955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001919855,"about_ca_topic_score_gemma":0.002203106,"domain_scores_codex":[0.9982266,0.0001375558,0.0003718722,0.0006502,0.00004860018,0.0005651321],"domain_scores_gemma":[0.999151,0.00002263632,0.0001318397,0.0004160934,0.0001894226,0.00008902654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007176441,0.0001009387,0.008330522,0.0000253776,0.0000684609,0.000001493643,0.0003209588,0.000009653219,0.9881045,0.000005528134,0.001559342,0.001401512],"study_design_scores_gemma":[0.001406166,0.000660999,0.008869001,0.00002254388,0.00001999416,0.00005976607,0.0001618483,0.00002126053,0.9592381,0.00006482066,0.02900928,0.0004661828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995773,0.0004333082,0.002092562,0.00007720807,0.0005169078,0.0005742003,0.0002540115,0.00001148157,0.0002673155],"genre_scores_gemma":[0.9849173,0.00004886507,0.01304273,0.0002459121,0.0004582022,0.00005021517,0.0004128622,0.00006016604,0.0007637273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02886632,"threshold_uncertainty_score":0.9999595,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140714996","doi":"10.1186/2049-2618-1-3","title":"Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut","year":2013,"lang":"en","type":"article","venue":"Microbiome","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":721,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Robarts Clinical Trials; University of Guelph; Kingston General Hospital; Queen's University","funders":"Canadian Institutes of Health Research; Physicians' Services Incorporated Foundation","keywords":"Clostridium difficile; Feces; Metronidazole; Medical microbiology; Microbiology; Antibiotics; Biology; Colonoscopy; Vancomycin; Internal medicine; Clostridium; Gastroenterology; Medicine; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.0326589021984101,"gpt":0.2917876916402142,"spread":0.2591287894418041,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003763043,0.0002166539,0.000302608,0.000123302,0.0003513485,0.0000594838,0.0002522696,0.0001252731,0.0004882843],"category_scores_gemma":[0.00007128478,0.0001168176,0.0002808352,0.0005059373,0.0002824529,0.00007503412,0.00003266752,0.000277605,0.00007986607],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000097818,"about_ca_system_score_gemma":0.0001726471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001034359,"about_ca_topic_score_gemma":0.00003045982,"domain_scores_codex":[0.9984685,0.00005822974,0.000489474,0.0002992093,0.0002874093,0.0003971299],"domain_scores_gemma":[0.9983841,0.0003824405,0.000162967,0.0006612721,0.0003251853,0.0000839873],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002368135,0.000272382,0.001038922,0.00009161358,0.000179903,0.00000161109,0.0003655569,0.00003090902,0.9772961,0.0001040253,0.009034846,0.01134736],"study_design_scores_gemma":[0.002447223,0.0004924375,0.02312286,0.00008775218,0.00014587,0.0001228854,0.0001121989,0.0009511805,0.9210682,0.00003845452,0.0512157,0.0001952424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987413,0.001433305,0.0006594628,0.007038357,0.0002801974,0.002744872,0.00009342131,0.00005838203,0.0002790347],"genre_scores_gemma":[0.9968643,0.0008671317,0.0001170767,0.0002404386,0.0003834128,0.0003917091,0.0001355274,0.00003462491,0.0009657841],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05622787,"threshold_uncertainty_score":0.5346371,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3026313426","doi":"10.1186/s40168-020-00819-8","title":"Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":592,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Agriculture Research System of China; Zhejiang University; National Natural Science Foundation of China","keywords":"Metabolome; Rumen; Biology; Microbiome; Metabolomics; Prevotella; Metagenomics; Methanogenesis; Biochemistry; Dairy cattle; Fatty acid; Metabolism; Food science; Bacteria; Fermentation; Animal science; Bioinformatics","retraction":null,"screen_n_in":null,"score":{"opus":0.03265466331811945,"gpt":0.2272062808040971,"spread":0.1945516174859777,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003921551,0.0003137817,0.0004576293,0.00002409254,0.0005113555,0.0001421272,0.0006059472,0.0001167983,0.0001319931],"category_scores_gemma":[0.00003631931,0.00009233136,0.00009382077,0.0006841167,0.0002587623,0.0001648689,0.0002935264,0.0002103196,0.0001710508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001701455,"about_ca_system_score_gemma":0.00001099595,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002778577,"about_ca_topic_score_gemma":0.00003207284,"domain_scores_codex":[0.9983485,0.0002469021,0.0002467133,0.0005075427,0.0001331382,0.0005171564],"domain_scores_gemma":[0.9991953,0.0002248091,0.0001637266,0.000116083,0.0001135616,0.0001864986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001996767,0.00005691002,0.001531664,0.00001328328,0.00006839116,0.000002510251,0.0005156019,0.000001035181,0.9949815,0.00004972388,0.002074059,0.000505641],"study_design_scores_gemma":[0.001725,0.0006801797,0.3670881,0.00004022013,0.0001147669,0.00006399134,0.0008683935,0.00002272378,0.2119932,0.00001005664,0.4168183,0.0005750147],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9496294,0.00182283,0.000008199286,0.04646462,0.00007069585,0.0008930571,0.0010182,0.00006485376,0.00002818623],"genre_scores_gemma":[0.9863454,0.000328913,0.0002256501,0.01220868,0.0001314981,0.00007077093,0.0001545118,0.000005013132,0.0005296263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7829883,"threshold_uncertainty_score":0.3932985,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2953135971","doi":"10.1186/s40168-019-0699-1","title":"Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":558,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; University of Alberta; Alberta Innovates - Technology Futures; Alberta Agriculture and Forestry","keywords":"Rumen; Biology; Heritability; Host (biology); Microbiome; Genetic variation; Microbial ecology; Genetics; Single-nucleotide polymorphism; Breed; Bacteria; Fermentation; Digestion (alchemy); Animal science; Food science; Genotype; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.005244700857976964,"gpt":0.1889099730353703,"spread":0.1836652721773933,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000153341,0.0001845888,0.0002257876,0.00002390331,0.0001708063,0.0001041608,0.000289851,0.0001157883,0.00008085205],"category_scores_gemma":[0.00000911097,0.00006786231,0.00003904188,0.0004196662,0.0002028523,0.00008347874,0.0001319312,0.0001591231,0.00009318264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004259668,"about_ca_system_score_gemma":0.000014438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004810017,"about_ca_topic_score_gemma":0.0006174074,"domain_scores_codex":[0.9988781,0.00008738715,0.0001731179,0.0003687846,0.00006740556,0.0004251573],"domain_scores_gemma":[0.9996228,0.00009298824,0.00008934763,0.00008759287,0.00005554612,0.00005171391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004958125,0.0001014624,0.02248164,0.00000912961,0.000007578156,0.000001832351,0.0001250305,0.000006660329,0.9763175,0.0000177158,0.0005537667,0.0003280787],"study_design_scores_gemma":[0.0005807982,0.0003513593,0.9212437,0.00005704188,0.000007635927,0.00004386509,0.0002391973,0.000002395981,0.0663767,0.00003675457,0.01080277,0.0002577768],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961537,0.0005693929,1.246065e-7,0.002432193,0.00006542137,0.0003984777,0.0001380863,0.00002511991,0.0002175166],"genre_scores_gemma":[0.9981825,0.00006791981,0.00005562794,0.0006250068,0.00003619519,0.000009157382,0.00005757,0.000002285429,0.0009636876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9099408,"threshold_uncertainty_score":0.2767345,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2225783224","doi":"10.1186/s40168-015-0145-y","title":"Human milk microbiota profiles in relation to birthing method, gestation and infant gender","year":2016,"lang":"en","type":"article","venue":"Microbiome","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":482,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"London Health Sciences Centre; Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Firmicutes; Microbiome; Lactobacillus; Streptococcus; Proteobacteria; Pregnancy; Physiology; Medical microbiology; Microbiology; Bacteria; 16S ribosomal RNA; Bioinformatics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02870565216443638,"gpt":0.3283599331913891,"spread":0.2996542810269527,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000527672,0.0001364347,0.0001758132,0.0005185823,0.000158965,0.00004337963,0.00006963781,0.0001272037,0.00007364866],"category_scores_gemma":[0.00003214229,0.0001124041,0.00002896443,0.0002790976,0.00003385292,0.0001985275,0.00003604,0.0001108387,0.00008612689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001893978,"about_ca_system_score_gemma":0.00001533355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002283919,"about_ca_topic_score_gemma":0.0001162525,"domain_scores_codex":[0.9987887,0.0001568605,0.0003519766,0.000327422,0.00006835737,0.0003066831],"domain_scores_gemma":[0.9995521,0.00006194694,0.0000910566,0.0001601768,0.00005455617,0.00008018794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005624536,0.00003338609,0.003463594,0.00008567012,0.000003621409,0.000002268434,0.002275293,0.000001165062,0.9876059,0.0005268455,0.002541306,0.003404709],"study_design_scores_gemma":[0.004032661,0.0002357582,0.5136504,0.0008009342,0.0000224442,0.0001045664,0.0003435111,0.00004068303,0.4137447,0.001501178,0.06485838,0.0006648035],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908431,0.0001168957,0.001931187,0.005902328,0.0002388841,0.000570289,0.00006259787,0.00008283434,0.0002519048],"genre_scores_gemma":[0.9586281,0.00001453123,0.03872034,0.002070234,0.00009344835,0.00002387328,0.00004706439,0.00003564767,0.0003667193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5738612,"threshold_uncertainty_score":0.4583706,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2777088958","doi":"10.1186/s40168-017-0382-3","title":"Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":472,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver Island University; McGill University; University of Guelph; University of Alberta","funders":"","keywords":"Biology; Gut flora; Biological dispersal; Ecology; Host (biology); Microbiome; Population; Zoology; Microbial ecology; Abundance (ecology); Immunology; Genetics; Bacteria; Demography","retraction":null,"screen_n_in":null,"score":{"opus":0.007778135901659752,"gpt":0.2604870002282346,"spread":0.2527088643265748,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001965708,0.00027639,0.000277306,0.0001229876,0.0002763267,0.0001527119,0.0003857798,0.0002633703,0.00002542229],"category_scores_gemma":[0.00002665001,0.0002687906,0.00007577238,0.00004542038,0.0001728254,0.000009250024,0.0002778878,0.0001556958,0.00007454392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004197528,"about_ca_system_score_gemma":0.00006456255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003848765,"about_ca_topic_score_gemma":0.0002692357,"domain_scores_codex":[0.9985524,0.00006683858,0.0002435528,0.0005849799,0.00006143523,0.0004907969],"domain_scores_gemma":[0.9989724,0.00001143775,0.0001614616,0.0006893729,0.00003479954,0.0001305113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000143349,0.00006936091,0.01504755,0.0001289398,0.00002609276,0.00003157819,0.0000348659,4.076365e-7,0.9749136,0.000009999526,0.005417655,0.004176616],"study_design_scores_gemma":[0.001991363,0.0003533483,0.3019792,0.0002035949,0.00001280588,0.0001348356,0.000005340315,0.000004443463,0.6575062,0.0000253853,0.03743241,0.0003510487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997214,0.0004870591,0.00002915169,0.001142847,0.0003837499,0.000337718,0.0000874894,0.00001430899,0.0003037133],"genre_scores_gemma":[0.9970782,0.0002356166,0.000317329,0.0007068723,0.0002456678,0.00001375299,0.0001306603,0.00004061794,0.001231239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3174074,"threshold_uncertainty_score":0.9999765,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2495055679","doi":"10.1186/s40168-016-0189-7","title":"Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions","year":2016,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":467,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Dairy Farmers of Canada; Michael Smith Health Research BC; Universities Space Research Association; Canadian Diabetes Association","keywords":"Metagenomics; Biology; Cardiorespiratory fitness; Microbial ecology; Ecology; Diversity (politics); Bacteria; Genetics; Physiology","retraction":null,"screen_n_in":null,"score":{"opus":0.01189827477255152,"gpt":0.2240638994494966,"spread":0.2121656246769451,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001537329,0.0001540524,0.0002014343,0.00007346223,0.0002496289,0.000007527947,0.0001614843,0.0001170882,0.00006334284],"category_scores_gemma":[0.00004059285,0.000119323,0.00009965758,0.00007296293,0.0002912713,0.000005304039,0.0006678733,0.00005197655,0.00002941781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003190866,"about_ca_system_score_gemma":0.0001015141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001183688,"about_ca_topic_score_gemma":0.00004870797,"domain_scores_codex":[0.9991158,0.00005757729,0.0002019353,0.0003453609,0.00004455486,0.0002348311],"domain_scores_gemma":[0.9994364,0.00001510886,0.00009672201,0.0002662965,0.00008552834,0.00009991915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001027319,0.00004615441,0.04074552,0.00004266307,0.00006575112,0.000002630749,0.00006483967,1.393367e-7,0.9560102,0.000009078825,0.002253022,0.0006573179],"study_design_scores_gemma":[0.00253641,0.0007892391,0.2925085,0.00009338632,0.0001525263,0.0002569839,0.00006203423,3.749145e-7,0.6295912,0.00002538752,0.07355542,0.0004284756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977298,0.0005131424,0.0007731786,0.00009298349,0.0001904994,0.0001588,0.0004125531,0.00001358441,0.0001154399],"genre_scores_gemma":[0.9983277,0.00003764342,0.000169645,0.0001027182,0.0001275986,0.000003861338,0.00005189114,0.00001555903,0.001163374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3264189,"threshold_uncertainty_score":0.4865852,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2904925223","doi":"10.1186/s40168-018-0603-4","title":"A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":466,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Arthritis Research Centre of Canada; University of Toronto; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Roseburia; Biology; Dysbiosis; Microbiome; Immunology; Actinomyces; Gut flora; Clostridium; Inflammatory bowel disease; Disease; Immune system; Ulcerative colitis; Internal medicine; Microbiology; Genetics; Lactobacillus; Medicine; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.009106202528948334,"gpt":0.273477523198535,"spread":0.2643713206695867,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001736041,0.0002549886,0.0004060625,0.000125603,0.0001538884,0.00002151197,0.0005328688,0.0001620606,0.00003208494],"category_scores_gemma":[0.00001868458,0.0001764311,0.0001218216,0.0003773838,0.000418143,0.000005693623,0.0004052665,0.000151983,0.00003656407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000532205,"about_ca_system_score_gemma":0.000136014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002699768,"about_ca_topic_score_gemma":0.002479678,"domain_scores_codex":[0.9983118,0.0002590261,0.0005472957,0.0004279058,0.00007927826,0.0003746766],"domain_scores_gemma":[0.9988025,0.00001935145,0.0002470165,0.0007393896,0.0001221661,0.00006962132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001581123,0.0007490616,0.04768171,0.00004467515,0.000075351,0.000002071882,0.001599596,8.1087e-7,0.9477856,0.000003855553,0.001866815,0.00003240124],"study_design_scores_gemma":[0.002242732,0.0006224663,0.6241605,0.00008640465,0.00004133411,0.00001043953,0.001421038,0.000002537429,0.364018,0.000009716756,0.007081728,0.0003031415],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978502,0.0004958356,0.000001378714,0.0001236319,0.0002876809,0.000833053,0.0002607435,0.00001325153,0.000134249],"genre_scores_gemma":[0.9991971,0.00002334387,0.00003267145,0.0002123827,0.00009071701,0.00002452414,0.0001544113,0.00002412614,0.000240721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5837675,"threshold_uncertainty_score":0.7194653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3106677156","doi":"10.1186/s40168-021-01138-2","title":"Disease-induced changes in plant microbiome assembly and functional adaptation","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":463,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Chinese Academy of Sciences; Institute of Microbiology, Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Microbiome; Rhizosphere; Metagenomics; Microbial ecology; Pepper; Botany; Plant disease; Colonization; Host (biology); Ecology; Amplicon sequencing; Bacteria; 16S ribosomal RNA; Biotechnology; Horticulture; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03801876702152276,"gpt":0.2162330519190647,"spread":0.178214284897542,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009483455,0.0001210205,0.0001278751,0.00003970942,0.000144429,0.00008819799,0.00006800847,0.00006573569,0.0003541805],"category_scores_gemma":[0.00001882757,0.00005986638,0.00003890068,0.0003241394,0.00002427175,0.0001263585,0.00007252613,0.0001178154,0.00004853769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004382931,"about_ca_system_score_gemma":0.00001914762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003928552,"about_ca_topic_score_gemma":0.006044891,"domain_scores_codex":[0.9992596,0.00007197707,0.0001460424,0.0002579773,0.00005307138,0.0002113692],"domain_scores_gemma":[0.9996899,0.0000876113,0.00004953804,0.00004925315,0.00005289744,0.00007080788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003443976,0.0001071661,0.0007571728,0.000007106345,0.00000895272,0.00002970048,0.00005023203,0.000001005873,0.9928084,0.00001805088,0.0007732263,0.005404522],"study_design_scores_gemma":[0.000416289,0.00009978766,0.6142758,0.0001284131,0.00001858117,0.0003426727,0.0008205284,0.0001175665,0.3023227,0.00005840937,0.08100976,0.0003894664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966545,0.0003300689,0.000003054557,0.002067611,0.0002329122,0.00008370165,0.0005186102,0.00002907159,0.00008044973],"genre_scores_gemma":[0.9974376,0.00009004169,0.00005272777,0.0003603569,0.00008309049,0.000009234201,0.001426153,0.000001129118,0.0005396996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6904857,"threshold_uncertainty_score":0.3878028,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142942734","doi":"10.1186/s40168-014-0050-9","title":"Microbial shifts in the aging mouse gut","year":2014,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":450,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Microbiome; Ageing; Physiology; Gut flora; Genetics; Zoology; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.006951410424829641,"gpt":0.2408505082223844,"spread":0.2338990977975547,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004487277,0.0001541711,0.0001322557,0.00007596416,0.0001009964,0.00004635712,0.0003755026,0.000133289,0.0000235612],"category_scores_gemma":[0.00001985353,0.0001212855,0.00007425058,0.0001406792,0.00007424172,0.000002956575,0.00009512193,0.0001379692,0.0001041902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001860911,"about_ca_system_score_gemma":0.00004276769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008670433,"about_ca_topic_score_gemma":0.0002781435,"domain_scores_codex":[0.9989067,0.0001390187,0.0002077373,0.0003171975,0.00004611902,0.0003831897],"domain_scores_gemma":[0.9994512,0.000011839,0.00005334038,0.000417507,0.00002391786,0.00004217646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001309674,0.00005311332,0.0004703106,0.00002038338,0.000006246677,0.000001516886,0.000215707,0.000003406251,0.9851832,0.00006595409,0.01341653,0.0005505554],"study_design_scores_gemma":[0.001123762,0.0001513752,0.01200852,0.00002474642,0.000009698719,0.00005566394,0.0001090969,0.000006598498,0.369418,0.00003453708,0.616719,0.0003390388],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971009,0.0002209041,0.0003017949,0.001170722,0.00014801,0.0001845966,0.00002287817,0.00001267695,0.0008375414],"genre_scores_gemma":[0.9943275,0.00003616494,0.000467714,0.003819472,0.0002768344,0.00000776281,0.0001758058,0.00002243283,0.0008662511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6157652,"threshold_uncertainty_score":0.4945879,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2906359965","doi":"10.1186/s40168-018-0615-0","title":"Rhizosphere microorganisms can influence the timing of plant flowering","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":440,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Xingjiang Uighur Autonomous Region Talent Project; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Rhizosphere; Biology; Microbial ecology; Phyllosphere; Botany; Arabidopsis thaliana; Phenology; Microorganism; Plant physiology; Agronomy; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01351165673298706,"gpt":0.2044348701969299,"spread":0.1909232134639428,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001096936,0.00009710677,0.0001069151,0.000007812396,0.0002947689,0.00004504931,0.0003525718,0.000048839,0.0007157972],"category_scores_gemma":[0.00001530979,0.00003258442,0.00004976495,0.0002294143,0.0001478543,0.0000699486,0.0001115249,0.0001040846,0.00009300943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002113495,"about_ca_system_score_gemma":0.000007904147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002027226,"about_ca_topic_score_gemma":0.002205859,"domain_scores_codex":[0.9994162,0.00003113924,0.0001747298,0.0001330264,0.00004710648,0.0001977571],"domain_scores_gemma":[0.9996618,0.00007375131,0.00008222298,0.00008103629,0.00007264715,0.00002852233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001008201,0.0000238262,0.0002245506,0.000002780486,0.00001018152,0.00000107598,0.0002020873,6.033297e-7,0.9952503,0.000006841438,0.001678364,0.002589275],"study_design_scores_gemma":[0.0000524964,0.000102671,0.02269182,0.00005398748,0.00000717839,0.00009297425,0.0003464587,0.000010013,0.9109148,0.00001615205,0.06559803,0.0001134047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998588,0.00005795866,0.000002671747,0.0004075065,0.0001635985,0.00008143164,0.0003240716,0.00002663494,0.0003481306],"genre_scores_gemma":[0.9991904,0.00001173004,0.0001109403,0.0002467534,0.0000904038,0.000001908181,0.00005173715,9.062589e-7,0.0002951959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08433552,"threshold_uncertainty_score":0.7837478,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3010928772","doi":"10.1186/s40168-020-00821-0","title":"Gut microbiota and cardiovascular disease: opportunities and challenges","year":2020,"lang":"en","type":"review","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":380,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Interior Health; University of British Columbia, Okanagan Campus; Kelowna General Hospital; University of British Columbia","funders":"","keywords":"Gut flora; Biology; Microbiome; Disease; Gut microbiome; Coronary artery disease; Immunology; Immune system; Bioinformatics; Medicine; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.1074939274177217,"gpt":0.2892825605918629,"spread":0.1817886331741412,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002098966,0.0006185235,0.001405036,0.0001350207,0.0001370857,0.0000766269,0.0002634723,0.0004661596,0.0000149276],"category_scores_gemma":[0.00001732621,0.0005643836,0.0005343675,0.00008197424,0.0002668943,0.000004372364,0.0005295998,0.000216762,0.00002492231],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000230421,"about_ca_system_score_gemma":0.0003494688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009260392,"about_ca_topic_score_gemma":0.000003718947,"domain_scores_codex":[0.9978241,0.0001921519,0.0004150362,0.001066706,0.00007290792,0.00042914],"domain_scores_gemma":[0.9987056,0.0000133001,0.0001364295,0.0007091715,0.00004328223,0.0003921849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001151028,0.00002898953,5.828648e-7,0.02929859,0.001175576,0.00007992079,0.00004442955,2.893384e-8,0.01056684,0.0000577729,0.004369782,0.954366],"study_design_scores_gemma":[0.0002313619,0.00007501202,0.00001933887,0.001673819,0.0009621351,0.0004214842,0.00004100326,8.775765e-8,0.00001607681,0.00000239139,0.9959691,0.0005882598],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006896353,0.9977269,0.000006420252,0.0004967781,0.0001542706,0.0006127162,0.000777391,0.00002743197,0.000129172],"genre_scores_gemma":[0.000029196,0.9974337,0.0001505112,0.0001818061,0.0003585636,0.00003667116,0.001099452,0.0001069885,0.0006030639],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9915993,"threshold_uncertainty_score":0.9996808,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122131141","doi":"10.1186/2049-2618-1-16","title":"Co-occurrence of anaerobic bacteria in colorectal carcinomas","year":2013,"lang":"en","type":"article","venue":"Microbiome","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":354,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Guelph; Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Genome British Columbia","keywords":"Fusobacterium nucleatum; Biology; Fusobacterium; Microbiology; Colorectal cancer; Campylobacter; Microbiome; Anaerobic bacteria; Bacteria; Cancer; Genetics; Bacteroides","retraction":null,"screen_n_in":null,"score":{"opus":0.01752824044169302,"gpt":0.2257933472547348,"spread":0.2082651068130418,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001410317,0.00010993,0.0002417523,0.00002266354,0.00002798034,0.00001336045,0.0002220494,0.0001007421,0.001494668],"category_scores_gemma":[0.00001924611,0.00004454688,0.00006135611,0.0002831146,0.0001046204,0.00007598469,0.00003391694,0.00007278454,0.0002037014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002127466,"about_ca_system_score_gemma":0.000006099075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001163035,"about_ca_topic_score_gemma":0.0002433752,"domain_scores_codex":[0.9990898,0.00009699575,0.0002739819,0.0002226353,0.00003778046,0.0002787589],"domain_scores_gemma":[0.9996586,0.000122844,0.00008722087,0.00004319921,0.00003396844,0.00005416555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007367991,0.00003823305,0.1473989,0.000003548445,0.000002725374,0.000001210197,0.00004004315,1.386418e-7,0.8485641,0.000009288886,0.001404983,0.002529425],"study_design_scores_gemma":[0.00009952048,0.0001247622,0.8946102,0.000008751915,0.00000183162,0.000009727824,0.0000589011,0.000002925243,0.1024129,0.00005708487,0.002508074,0.0001053281],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990299,0.00007995666,2.538152e-7,0.0002287912,0.0001097251,0.0001739992,0.0001469779,0.00001923948,0.0002111763],"genre_scores_gemma":[0.9994559,0.00001323198,0.00006500389,0.0001091651,0.00003668466,0.00001516898,0.0002627069,4.515367e-7,0.00004168797],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7472113,"threshold_uncertainty_score":0.9994181,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2932683107","doi":"10.1186/s40168-019-0618-5","title":"Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":349,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Alberta Innovates; Biotechnology and Biological Sciences Research Council; Alberta Innovates - Technology Futures","keywords":"Rumen; Metagenomics; Biology; Microbiome; Breed; Host (biology); Beef cattle; Animal science; Genetics; Gene; Food science; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.03413046870272283,"gpt":0.2639350294856185,"spread":0.2298045607828957,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003117693,0.0001653477,0.0003217045,0.00003575005,0.000231298,0.00006267037,0.0001710836,0.00005269619,0.0000515723],"category_scores_gemma":[0.00001035205,0.00004718409,0.00005464731,0.000436025,0.0001530156,0.00006246387,0.00003825297,0.0001284308,0.00006124801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003164319,"about_ca_system_score_gemma":0.000006815006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001859998,"about_ca_topic_score_gemma":0.0002207128,"domain_scores_codex":[0.9989331,0.0003205875,0.0001581743,0.0002953311,0.00005885593,0.0002339826],"domain_scores_gemma":[0.9991567,0.000628755,0.00009009177,0.00005871365,0.00003181226,0.00003390502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006493763,0.00006089734,0.002032245,0.000005336045,0.00004268944,4.652317e-7,0.0002362418,0.000004279366,0.9972502,0.0001018506,0.0001317962,0.00006907662],"study_design_scores_gemma":[0.000701888,0.0009105434,0.7669567,0.00003339249,0.00006181491,0.0000129409,0.0003758566,0.0000261204,0.2299319,0.00004206267,0.000742613,0.0002041763],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956889,0.0006319504,2.465088e-7,0.002684389,0.00003590735,0.0006248112,0.0001694795,0.00001410508,0.0001502326],"genre_scores_gemma":[0.9992375,0.00002292341,0.000005581971,0.000344647,0.00001730134,0.00002136267,0.00006024522,0.000001274142,0.0002892064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7673182,"threshold_uncertainty_score":0.1924111,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2993476941","doi":"10.1186/s40168-019-0767-6","title":"Advancing functional and translational microbiome research using meta-omics approaches","year":2019,"lang":"en","type":"review","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":338,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Ontario Ministry of Economic Development and Innovation; Government of Canada; Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Genome Canada; Ontario Genomics; Ontario Genomics Institute; University of Ottawa","keywords":"Microbiome; Biology; Omics; Microbial ecology; Computational biology; Metagenomics; Medical microbiology; Translational research; Posttranslational modification; Bioinformatics; Proteomics; Data science; Biotechnology; Genetics; Microbiology; Bacteria; Computer science; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.435717386677676,"gpt":0.4214016577859939,"spread":0.01431572889168203,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012123,0.0006077487,0.001493653,0.0005490925,0.0003207079,0.0001029649,0.0003356137,0.0008570871,0.00008736511],"category_scores_gemma":[0.00002092148,0.0005291066,0.0007041004,0.0004552743,0.0002923121,0.00001117324,0.0003015916,0.0006164851,0.0000851717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000976334,"about_ca_system_score_gemma":0.001070385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002359223,"about_ca_topic_score_gemma":0.00001648783,"domain_scores_codex":[0.9967306,0.0004078574,0.0007107328,0.001163914,0.000169974,0.000816925],"domain_scores_gemma":[0.998781,0.00007646997,0.0002529327,0.0005830972,0.0001464083,0.0001600509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006054288,0.0002152367,0.00001047835,0.02581577,0.003741574,0.000007175506,0.0000782369,0.00002590522,0.8710415,0.0001286569,0.006762344,0.0921126],"study_design_scores_gemma":[0.0003168551,0.00006958641,0.000004984095,0.0005503333,0.001524099,0.0005349524,0.00001736743,0.000006203509,0.0009311661,0.00001243039,0.9954935,0.0005384963],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005905182,0.9962723,0.000695268,0.00006196886,0.0003212085,0.001060885,0.0008813645,0.00001492482,0.000101606],"genre_scores_gemma":[0.00008227729,0.9866987,0.006018274,0.00008248823,0.000499184,0.00004909583,0.004671094,0.0001470417,0.001751803],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9887312,"threshold_uncertainty_score":0.999716,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2809784323","doi":"10.1186/s40168-018-0494-4","title":"Probiotic Bifidobacterium strains and galactooligosaccharides improve intestinal barrier function in obese adults but show no synergism when used together as synbiotics","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":336,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"FrieslandCampina; U.S. Department of Agriculture","keywords":"Synbiotics; Probiotic; Biology; Bifidobacterium; Microbiology; Prebiotic; Food science; Bifidobacterium longum; Lactobacillus; Bacteria; Fermentation; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.007182176839980697,"gpt":0.2278485008722064,"spread":0.2206663240322257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002415279,0.0003534555,0.0002812523,0.0001600772,0.0001232791,0.00009553661,0.0002151341,0.0003692223,0.000210156],"category_scores_gemma":[0.00009243127,0.0003323185,0.00007716122,0.0001294184,0.0003337736,0.00001980687,0.0001904666,0.0002224433,0.0001928922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006537502,"about_ca_system_score_gemma":0.000207919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003522215,"about_ca_topic_score_gemma":0.0005026203,"domain_scores_codex":[0.9981166,0.0000813244,0.0003954146,0.0007217567,0.00007932022,0.0006056178],"domain_scores_gemma":[0.9990236,0.00001223751,0.0001372036,0.0004265597,0.0002144598,0.0001859817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003070236,0.0001188109,0.002687346,0.000154959,0.00003965859,0.000007575639,0.0003962782,3.140097e-7,0.9947593,0.00001615714,0.0009096574,0.0006028926],"study_design_scores_gemma":[0.002384253,0.002577843,0.02614832,0.0003203469,0.00005486616,0.0002025108,0.0003390895,0.00006152277,0.9555475,0.00007184321,0.01150394,0.0007880035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979712,0.0002160646,0.00014546,0.0002076165,0.0005499323,0.0004932876,0.0001553639,0.00003281644,0.0002283046],"genre_scores_gemma":[0.9952781,0.0000574637,0.001030449,0.0005922811,0.0004663857,0.00001245907,0.0002320165,0.00005538355,0.002275495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03921187,"threshold_uncertainty_score":0.9999129,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3010746544","doi":"10.1186/s40168-020-00806-z","title":"RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":334,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Government of Canada; Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute","keywords":"Microbiome; Biology; Metaproteomics; Metagenomics; Abundance (ecology); Human microbiome; Antibiotics; Computational biology; Microbiology; Ecology; Bioinformatics; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01580517260319422,"gpt":0.2588320774076178,"spread":0.2430269048044235,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005036634,0.0003054071,0.0004058131,0.0001647832,0.0001046501,0.00005234178,0.0003927736,0.0002577636,0.00005517102],"category_scores_gemma":[0.00008997223,0.0002885531,0.0001477331,0.0003766244,0.0001775009,0.000005882208,0.0002780491,0.0001440878,0.00003807321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001874217,"about_ca_system_score_gemma":0.0002117239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001678128,"about_ca_topic_score_gemma":0.000004478145,"domain_scores_codex":[0.9982073,0.0002031419,0.0004256641,0.0006359648,0.0001037014,0.0004241973],"domain_scores_gemma":[0.9990573,0.00002174675,0.0001587473,0.0003518241,0.0001171558,0.0002932569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005505356,0.00007210219,0.0002246798,0.0001447384,0.00009948624,0.000002734786,0.0009078269,0.000002151397,0.9809026,0.000009035783,0.01598432,0.001099753],"study_design_scores_gemma":[0.001325879,0.0007385539,0.001234987,0.00002935669,0.00004850066,0.00001799694,0.0001370808,0.000002769382,0.8436772,0.000002621415,0.1524763,0.0003088178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922864,0.002056147,0.0009174542,0.002857398,0.00009257265,0.0006436576,0.001014144,0.00002928053,0.0001028777],"genre_scores_gemma":[0.9787866,0.0000913199,0.01214445,0.007825936,0.0001385051,0.00002117598,0.000488469,0.00004989374,0.0004535861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1372255,"threshold_uncertainty_score":0.9999567,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2437211204","doi":"10.1186/s40168-016-0174-1","title":"Host species identity, site and time drive temperate tree phyllosphere bacterial community structure","year":2016,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":331,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université du Québec en Outaouais; Université du Québec à Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Phyllosphere; Biology; Ecology; Host (biology); Temperate rainforest; Temperate forest; Community structure; Temperate climate; Epiphyte; Ecosystem; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01124602085585698,"gpt":0.200224344859921,"spread":0.1889783240040641,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001308546,0.0001705013,0.0001890871,0.00001437785,0.000599923,0.0002228897,0.0002897624,0.0001030552,0.004757192],"category_scores_gemma":[0.00002400937,0.00005849402,0.00006240734,0.0001581356,0.0001648836,0.0004866399,0.0002691426,0.0002082132,0.0003354626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003865036,"about_ca_system_score_gemma":0.000005057369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009411183,"about_ca_topic_score_gemma":0.004725492,"domain_scores_codex":[0.9991394,0.0002261372,0.0001707667,0.000171866,0.00005870665,0.0002330911],"domain_scores_gemma":[0.9995372,0.0001530454,0.00007974651,0.0001024652,0.00006299406,0.00006458282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003135596,0.00004864447,0.001476002,0.000003599688,0.00001949651,0.000001680315,0.00008822525,8.990689e-9,0.9921683,0.00001153792,0.00354217,0.002608958],"study_design_scores_gemma":[0.0003841122,0.0002034137,0.4499777,0.00008215346,0.00001752654,0.0001061158,0.0002079583,5.981386e-7,0.4621505,0.0001248389,0.08642545,0.0003196582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961492,0.00003597488,9.425308e-7,0.0006730397,0.0001978822,0.0001051633,0.002373552,0.00005019674,0.0004140609],"genre_scores_gemma":[0.9945194,0.00003938313,0.00003717213,0.0001034334,0.0001682703,0.000001504046,0.0002913048,0.000001517681,0.004838004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5300178,"threshold_uncertainty_score":0.9961526,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3169670907","doi":"10.1186/s40168-021-01078-x","title":"An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":328,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Fundamental Research Funds for the Central Universities; Novo Nordisk Fonden; Nanjing Agricultural University; Jilin Agricultural University; National Natural Science Foundation of China","keywords":"Metagenomics; Biology; Microbiome; Genome; Microbial ecology; Computational biology; Medical microbiology; Gene; Gut microbiome; Evolutionary biology; Genetics; Microbiology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01675027258245843,"gpt":0.2249411296544035,"spread":0.2081908570719451,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001354527,0.0002130369,0.0003389817,0.00002232531,0.0001740559,0.00006811968,0.0003060704,0.00007396077,0.001349584],"category_scores_gemma":[0.00002466653,0.00008251097,0.00009874512,0.0004572974,0.0002103999,0.0001104154,0.0001340084,0.000102113,0.00004022678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000220175,"about_ca_system_score_gemma":0.00002253245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007707969,"about_ca_topic_score_gemma":0.0005124377,"domain_scores_codex":[0.998669,0.00019033,0.0002991168,0.0004529475,0.00007134606,0.0003172687],"domain_scores_gemma":[0.9992681,0.0002011419,0.0001361279,0.000141986,0.0001526989,0.00009993961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006454108,0.0002126779,0.008869961,0.000004722635,0.00002094942,0.00002369489,0.00005246807,3.363072e-7,0.9873554,0.00001802533,0.0009003826,0.002476878],"study_design_scores_gemma":[0.0003397898,0.0002613659,0.4410657,0.00003955889,0.00003071309,0.0001504076,0.00031268,0.000006858218,0.5419909,0.0001088236,0.01550069,0.0001924858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995602,0.001742904,0.000009240322,0.0004811613,0.00006064484,0.0001332599,0.00190649,0.00003014452,0.00003417431],"genre_scores_gemma":[0.996057,0.0001235136,0.0007829177,0.0002883332,0.00009098354,0.000007039958,0.002361629,0.00000262119,0.0002859332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4453644,"threshold_uncertainty_score":0.9995633,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4221009865","doi":"10.1186/s40168-021-01184-w","title":"Endometrial microbiota composition is associated with reproductive outcome in infertile patients","year":2022,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":311,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Pacific Centre for Reproductive Medicine","funders":"Instituto de Salud Carlos III; Horizon 2020 Framework Programme; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; Ministerio de Economía y Competitividad; Ministerio de Educación, Cultura y Deporte; European Commission; Conselleria d'Educació, Investigació, Cultura i Esport; Ministerio de Ciencia, Innovación y Universidades","keywords":"Biology; Miscarriage; Ureaplasma; Pregnancy; Microbiome; Gardnerella vaginalis; Reproductive medicine; Embryo transfer; Gynecology; Obstetrics; Bacterial vaginosis; Medicine; Bioinformatics; Microbiology; Mycoplasma; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02237919367022269,"gpt":0.2783372508675085,"spread":0.2559580571972858,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008955192,0.0002653548,0.0004540229,0.001151641,0.0005289807,0.00003240213,0.0003525109,0.0001418536,0.002540173],"category_scores_gemma":[0.0002948517,0.0002558934,0.0001123492,0.00206333,0.0002922476,0.0001897499,0.000370391,0.0009484107,0.000430781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009778352,"about_ca_system_score_gemma":0.00009830355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003404003,"about_ca_topic_score_gemma":0.00002048099,"domain_scores_codex":[0.9970506,0.0007767943,0.0005414267,0.0009109426,0.0001050377,0.0006151302],"domain_scores_gemma":[0.9986379,0.0001994379,0.0002363395,0.0006432206,0.0002590952,0.0000239961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007847997,0.001588172,0.1662798,0.000007534838,0.0002329732,0.0000116955,0.0006387435,0.00004059865,0.8264411,0.00001502166,0.003442298,0.0005172695],"study_design_scores_gemma":[0.01388047,0.001879796,0.5228855,0.00003368773,0.00006739051,0.0002135792,0.0002784223,0.000001225177,0.4157054,0.00004588722,0.04424635,0.0007622669],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960728,0.000233011,0.00001151697,0.0004725255,0.0008843908,0.001053345,0.0006788959,0.00009836062,0.0004951434],"genre_scores_gemma":[0.9953998,0.00000329865,0.00003372294,0.0001458405,0.00003639285,0.0001757724,0.001501769,0.00004117867,0.002662229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4107357,"threshold_uncertainty_score":0.9999893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3155099403","doi":"10.1186/s40168-021-01165-z","title":"Intestinal microbiota shapes gut physiology and regulates enteric neurons and glia","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":309,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; Hotchkiss Brain Institute; University of Calgary","funders":"National Institute of Neurological Disorders and Stroke; Canadian Institutes of Health Research; University of Calgary","keywords":"Biology; Enteric nervous system; Gut flora; Gut–brain axis; Microbial ecology; Enteric bacteria; Gut bacteria; Enteric virus; Microbiology; Cell biology; Neuroscience; Immunology; Bacteria; Genetics; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.0108516038696016,"gpt":0.2297643177783071,"spread":0.2189127139087055,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004953593,0.0001674108,0.0002646447,0.00007647027,0.00007451326,0.00003077682,0.00004750663,0.00005483687,0.000179086],"category_scores_gemma":[0.0001187372,0.0001569286,0.00004971514,0.0001637246,0.000316029,0.00004614171,0.0001598607,0.0001517222,0.00002421469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001427087,"about_ca_system_score_gemma":0.00004251394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000251657,"about_ca_topic_score_gemma":0.00001361064,"domain_scores_codex":[0.9990819,0.00004326012,0.0001790013,0.0004002352,0.00003537094,0.0002602028],"domain_scores_gemma":[0.9995508,0.00005702203,0.00004185459,0.0001589328,0.00007607367,0.0001153606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007987933,0.000119705,0.01103887,0.0001618813,0.00002026193,0.00008734771,0.00009043285,3.288704e-7,0.9867242,0.00002001088,0.0007834386,0.0008736352],"study_design_scores_gemma":[0.001929453,0.0005436025,0.9275418,0.0003277099,0.0001210728,0.01411723,0.0002701453,0.0001065914,0.0481779,0.000254413,0.006377184,0.0002329044],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961594,0.001056499,0.00003471103,0.002355638,0.00005733117,0.0001124221,0.00001879294,0.0000485326,0.0001567241],"genre_scores_gemma":[0.994477,0.0000574495,0.003478047,0.00100564,0.00003648125,0.000002666656,0.00005591846,0.00001624021,0.0008705999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9385463,"threshold_uncertainty_score":0.6399361,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2795252759","doi":"10.1186/s40168-018-0433-4","title":"High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":291,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Fundação para a Ciência e a Tecnologia; Canadian Institutes of Health Research; McMaster University","keywords":"Colitis; Biology; Gut flora; Lactobacillus; Immunology; Butyrate; Microbiology; Biochemistry; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.01017561672077535,"gpt":0.2437460913388797,"spread":0.2335704746181043,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001952936,0.000167428,0.0001653388,0.00006628919,0.0001169016,0.00003854953,0.00009408792,0.0001637728,0.00002684278],"category_scores_gemma":[0.00003265991,0.0001713361,0.00002477639,0.0001325537,0.0001893697,0.000007973282,0.00008720319,0.00007857942,0.00002713603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004546455,"about_ca_system_score_gemma":0.00006402995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005625249,"about_ca_topic_score_gemma":0.0007024286,"domain_scores_codex":[0.9988574,0.00006702256,0.0002140253,0.0004605846,0.00003709224,0.0003638577],"domain_scores_gemma":[0.9995862,0.000005691661,0.00007207882,0.0001753664,0.00007842057,0.00008219734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001440143,0.00004639164,0.000914347,0.00003809711,0.00001345263,0.000001437874,0.0001057806,1.709098e-7,0.9917203,0.00001075457,0.006322419,0.0006828865],"study_design_scores_gemma":[0.0005526247,0.0003231606,0.01543232,0.00003656378,0.000007876239,0.00006571228,0.00004496463,0.000001279142,0.9478043,0.00003525223,0.03547477,0.0002212243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975142,0.001014984,0.00005895171,0.0006403669,0.0002674147,0.0002198871,0.000204223,0.00001564482,0.00006429687],"genre_scores_gemma":[0.9964468,0.0001971259,0.0009469282,0.0004377645,0.0002363136,0.000007284527,0.000237826,0.00002457545,0.00146534],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04391599,"threshold_uncertainty_score":0.6986885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100564469","doi":"10.1186/2049-2618-1-12","title":"Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis","year":2013,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":290,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics; Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Dysbiosis; Bacterial vaginosis; Microbiome; Lactobacillus; Population; Metagenomics; Genetics; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.03052271623780589,"gpt":0.2892899847977915,"spread":0.2587672685599856,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000222825,0.0002059496,0.0005215728,0.0001976448,0.000169177,0.00002871028,0.0001842742,0.0001382003,0.000451313],"category_scores_gemma":[0.00003430029,0.0001307144,0.00007380022,0.0002812176,0.0007841891,0.0001354318,0.0002449614,0.0003756322,0.0000424687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006554177,"about_ca_system_score_gemma":0.00005942809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001869631,"about_ca_topic_score_gemma":0.00005020133,"domain_scores_codex":[0.9983357,0.0005152641,0.0003619447,0.0004084661,0.00003386408,0.0003447275],"domain_scores_gemma":[0.9992858,0.0001100578,0.000167177,0.0003164428,0.00008235254,0.00003824179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004267838,0.0001824577,0.00339161,0.00005244309,0.0002719614,1.36069e-7,0.0008661752,5.101558e-7,0.9860271,0.00001406852,0.008742874,0.0004079584],"study_design_scores_gemma":[0.001149413,0.0001675992,0.0300715,0.00005093147,0.00004305694,0.00005825367,0.0003499166,0.000001243308,0.9598203,0.00002819833,0.008098777,0.0001608349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908029,0.006747914,0.00002386213,0.001407579,0.0001570298,0.0006357007,0.0001213877,0.00001433802,0.00008924957],"genre_scores_gemma":[0.9981999,0.0001736765,0.00006631771,0.00007553664,0.000006504364,0.00004303132,0.00005055184,0.00001073624,0.001373723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02667989,"threshold_uncertainty_score":0.5330378,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3017156868","doi":"10.1186/s40168-020-00827-8","title":"Disentangling the mechanisms shaping the surface ocean microbiota","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":288,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"H2020 Marie Skłodowska-Curie Actions; Fondo de Financiamiento de Centros de Investigación en Áreas Prioritarias; Comisión Nacional de Investigación Científica y Tecnológica; Horizon 2020 Framework Programme; Barcelona Supercomputing Center; Norges Forskningsråd; Ministerio de Economía y Competitividad; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biological dispersal; Abiotic component; Biology; Ecology; Ecological selection; Subtropics; Microbial ecology; Microbiome; Community; Biogeochemical cycle; Selection (genetic algorithm); Ecosystem; Genetics; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.0241952074861522,"gpt":0.2135276353566233,"spread":0.1893324278704711,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002987951,0.0001677808,0.000150013,0.000007173689,0.0008258311,0.00004383227,0.001064794,0.00008723779,0.004415545],"category_scores_gemma":[0.00002130336,0.0001004175,0.00009464308,0.0003140992,0.0004540393,0.00007120536,0.0008859218,0.0003916522,0.001822111],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005481867,"about_ca_system_score_gemma":0.000009200391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008365177,"about_ca_topic_score_gemma":0.0001381719,"domain_scores_codex":[0.9988572,0.0002830038,0.0001867387,0.0002662898,0.00005403765,0.0003527391],"domain_scores_gemma":[0.9993075,0.0001409574,0.00008087183,0.0004018229,0.000005638243,0.00006326448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001707416,0.00002221549,0.0006095487,0.000004449491,0.00001813707,0.000002782152,0.001773403,0.0004750621,0.9551778,0.0001730778,0.04164784,0.00007860117],"study_design_scores_gemma":[0.00145265,0.0003807713,0.007560164,0.00004212193,0.000163311,0.0001893968,0.003245558,0.003720589,0.3247389,0.004519831,0.6525914,0.001395279],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775122,0.000105512,0.0002539126,0.02035867,0.0002342457,0.0003274101,0.00003628764,0.00006956705,0.001102199],"genre_scores_gemma":[0.9853545,0.00001326718,0.0003564669,0.01389804,0.00005047022,0.000001296155,0.00003390381,0.00001792856,0.0002741218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6304389,"threshold_uncertainty_score":0.9989551,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2605060994","doi":"10.1186/s40168-017-0254-x","title":"Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":287,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McMaster University; Children's Hospital Research Institute of Manitoba; Hospital for Sick Children; University of British Columbia; Public Health Ontario; BC Children's Hospital; University of Toronto; University of Manitoba; Simon Fraser University; University of Alberta Hospital; SickKids Foundation; Child and Family Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates","keywords":"Microbial ecology; Biology; Medical microbiology; Gut flora; Environmental health; Physiology; Ecology; Zoology; Immunology; Bacteria; Medicine; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01399268769268407,"gpt":0.2631137891178207,"spread":0.2491211014251366,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003437907,0.0003220503,0.0003586219,0.0001022883,0.0008223703,0.0001266836,0.001180944,0.0002716023,0.00002574633],"category_scores_gemma":[0.00007891779,0.0002503606,0.0002513017,0.0001114547,0.0002308082,0.0000136916,0.0008771854,0.0001593846,0.00005942494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004916711,"about_ca_system_score_gemma":0.0001679897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005979972,"about_ca_topic_score_gemma":0.0007147366,"domain_scores_codex":[0.9981852,0.00007031699,0.0004463439,0.0005833217,0.0001186129,0.0005961603],"domain_scores_gemma":[0.9978599,0.00001623006,0.0003283661,0.001559273,0.00008203193,0.0001542103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001188801,0.00006731704,0.01489731,0.00005319817,0.0001044545,0.00001148734,0.0003884984,0.00005755362,0.9772125,0.000003385444,0.00662188,0.0004634779],"study_design_scores_gemma":[0.001533772,0.0005341741,0.3183786,0.0001729454,0.00006868861,0.0001181235,0.000108709,0.000002577205,0.5337512,0.000008074445,0.1446874,0.0006357388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962099,0.001372602,0.00001950077,0.0007348458,0.0005393889,0.0005244022,0.0002999142,0.00002108548,0.0002783999],"genre_scores_gemma":[0.9960091,0.0001174253,0.0005071794,0.001029486,0.0001493785,0.00001633642,0.00006630203,0.00004916774,0.002055632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4434614,"threshold_uncertainty_score":0.9999949,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105976727","doi":"10.1186/2049-2618-2-23","title":"Characterization of the vaginal microbiota of healthy Canadian women through the menstrual cycle","year":2014,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":284,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Plant Biotechnology Institute; Lawson Health Research Institute; National Research Council Canada; British Columbia Centre of Excellence for Women's Health; Western University; Women's Health Research Institute; University of British Columbia; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Biology; Menstrual cycle; Medical microbiology; Microbial ecology; Bacterial vaginosis; Vaginal flora; Physiology; Microbiology; Bacteria; Genetics; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.009429078778070251,"gpt":0.2469082116783515,"spread":0.2374791329002812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005407258,0.0001334756,0.0002309782,0.0001356992,0.0003131082,0.00001115512,0.0004724984,0.0001414533,0.0004417054],"category_scores_gemma":[0.00007648411,0.00008394477,0.00007722569,0.0004993878,0.0007612177,0.00008484144,0.0001002391,0.0002928873,0.0001435321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002306191,"about_ca_system_score_gemma":0.0003506019,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02036952,"about_ca_topic_score_gemma":0.001812686,"domain_scores_codex":[0.9984834,0.0004386467,0.0003319011,0.0002551576,0.00003749027,0.0004534727],"domain_scores_gemma":[0.9988425,0.00007496099,0.0001971776,0.0006803001,0.0001811564,0.00002395258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004047891,0.00006542598,0.001018181,0.00002938761,0.00008243735,9.289606e-8,0.001553186,0.000008161443,0.9954483,0.0005932532,0.0004607221,0.0007004034],"study_design_scores_gemma":[0.0005564398,0.0001860021,0.03938873,0.00002288028,0.00001419191,0.00008800999,0.0002189577,0.000001829609,0.8065671,0.0001192352,0.1527234,0.0001132453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958229,0.00008385489,0.00006067761,0.001848439,0.0006677358,0.0003862613,0.0002068896,0.00001324416,0.0009099789],"genre_scores_gemma":[0.9983817,0.00001433662,0.00002306544,0.0002415226,0.00003668739,0.00001979412,0.00006930199,0.00001561044,0.001198003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1888812,"threshold_uncertainty_score":0.9861539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3089698117","doi":"10.1186/s40168-020-00914-w","title":"Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":272,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Medical Research Council; Directorate for Biological Sciences; Ente Cassa di Risparmio di Firenze; Biotechnology and Biological Sciences Research Council; Università degli Studi di Firenze; Deakin University; Quadram Institute Bioscience; Trent University; Fondazione Cassa di Risparmio di Firenze; University of East Anglia; Università degli Studi di Siena; Nottingham Trent University","keywords":"Hippocampus; Biology; Lachnospiraceae; Gut flora; Hippocampal formation; Synaptic plasticity; Neurotransmission; Transplantation; Cognitive decline; Microglia; Neuroscience; Immunology; Internal medicine; Inflammation; Medicine; Disease; Dementia; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.006673127462991587,"gpt":0.2125654025218214,"spread":0.2058922750588298,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001355406,0.0003368469,0.0003698018,0.0000899986,0.0001947059,0.00005364077,0.0001419535,0.0003352141,0.00002991133],"category_scores_gemma":[0.00004264111,0.0003428666,0.00006456132,0.0001590117,0.0001284663,0.00001118219,0.0001160655,0.0004802021,0.000008928781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002685397,"about_ca_system_score_gemma":0.00005430231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000734781,"about_ca_topic_score_gemma":0.0004758084,"domain_scores_codex":[0.9980204,0.0002380207,0.0003857069,0.0008079491,0.00007218037,0.0004758],"domain_scores_gemma":[0.9994604,0.00004057875,0.0001226843,0.0001104777,0.0000220282,0.0002438091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003511136,0.00005898475,0.01134602,0.0001467237,0.00005905963,0.00003606814,0.001240995,0.00006023096,0.985248,2.90142e-7,0.00002606749,0.001426425],"study_design_scores_gemma":[0.008726037,0.001469141,0.272197,0.0006748574,0.0001597248,0.0004003163,0.0001887622,0.005593379,0.7087799,0.00001292082,0.0004814422,0.001316553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958179,0.0005693623,0.002370695,0.0003006942,0.0001267916,0.0006481193,0.0001145198,0.00003436111,0.00001755591],"genre_scores_gemma":[0.9983032,0.0001155606,0.0008039469,0.0002091661,0.00009362966,0.00001097926,0.0003764837,0.00005097652,0.00003604882],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2764682,"threshold_uncertainty_score":0.9999023,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2948052688","doi":"10.1186/s40168-019-0701-y","title":"Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Natural Science Foundation of China; University of Alberta","keywords":"Biology; Crosstalk; Microbiome; Epithelium; Microbiology; Genetics; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.0141626673448912,"gpt":0.2159896997603841,"spread":0.2018270324154929,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002442197,0.0001779643,0.000227709,0.00002777285,0.0001899449,0.00003270751,0.0005283896,0.00009656808,0.0001954262],"category_scores_gemma":[0.0000108733,0.00005461898,0.0001242561,0.0004808671,0.0002560978,0.00006714643,0.0002326638,0.0001386077,0.000140878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004463624,"about_ca_system_score_gemma":0.00003804114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006742365,"about_ca_topic_score_gemma":0.0002644804,"domain_scores_codex":[0.9988023,0.00007842442,0.0003690231,0.0002926442,0.0001007183,0.0003569036],"domain_scores_gemma":[0.9995304,0.0001120032,0.0001391868,0.0001162924,0.00006651137,0.00003559281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006580116,0.000161473,0.006202603,0.00001580859,0.000007484788,5.228913e-7,0.000330375,0.00003449524,0.9921759,0.00008887899,0.0002261707,0.0006905028],"study_design_scores_gemma":[0.0005457778,0.0001235825,0.4544884,0.0001225762,0.000007795355,0.00001752602,0.0005404432,0.0002693646,0.5340249,0.0003429406,0.00923864,0.0002781093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976274,0.0001277397,0.000003985535,0.001447799,0.0001177986,0.0003637635,0.0001032814,0.00001528711,0.000192967],"genre_scores_gemma":[0.9983796,0.000005247896,0.0001955846,0.0002425359,0.00002771739,0.00001281983,0.00004564159,0.000001756524,0.001089133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.458151,"threshold_uncertainty_score":0.2227297,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3162248102","doi":"10.1186/s40168-021-01059-0","title":"Identifying biases and their potential solutions in human microbiome studies","year":2021,"lang":"en","type":"review","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Faculty of Graduate Studies, Dalhousie University; Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Research Nova Scotia; Nova Scotia Health Research Foundation","keywords":"Biology; Microbiome; Microbial ecology; Medical microbiology; Human microbiome; Computational biology; Evolutionary biology; Ecology; Bioinformatics; Immunology; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.1480301098973867,"gpt":0.4057771703616046,"spread":0.2577470604642179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003495473,0.0006001107,0.001493724,0.0004315333,0.0003282303,0.0001024298,0.0003095482,0.0005507108,0.00003169509],"category_scores_gemma":[0.00003155508,0.0005224908,0.0004569112,0.0004123263,0.0002761999,0.000006462289,0.0008134,0.0003212779,0.0000195731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000111974,"about_ca_system_score_gemma":0.0002747816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004324492,"about_ca_topic_score_gemma":0.0001349635,"domain_scores_codex":[0.9973187,0.0002751891,0.0007572634,0.0009338131,0.00004509654,0.0006698787],"domain_scores_gemma":[0.9989901,0.00002751841,0.0002614129,0.0005303997,0.0000952476,0.00009536331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002775613,0.0001426998,0.000002756241,0.008202941,0.0005140192,0.00006585184,0.0001677788,3.830987e-7,0.9393283,0.00001810836,0.006700475,0.04485393],"study_design_scores_gemma":[0.000395985,0.00007215397,0.00001031506,0.009041567,0.0002259102,0.001188242,0.0002900196,1.270557e-7,0.00288336,0.00001028052,0.9852031,0.0006789101],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00618273,0.992299,0.00003189467,0.00003447379,0.0003979161,0.0005022399,0.0005082748,0.00001790017,0.00002561706],"genre_scores_gemma":[0.001191962,0.9941615,0.0001791008,0.00007332505,0.0002611244,0.00004724987,0.00298667,0.0000804179,0.001018645],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9785026,"threshold_uncertainty_score":0.9997227,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2782447462","doi":"10.1186/s40168-017-0383-2","title":"Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":252,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Environment Research Council; Earth and Life Systems Alliance; Queen's University; University of East Anglia; Queen's University Belfast; Sight Research UK","keywords":"Metagenomics; Biology; Biogeochemical cycle; Cave; Ecology; Ecosystem; Anaerobic oxidation of methane; Microbial population biology; Geomicrobiology; Sediment; Microbial ecology; Archaea; Food web; Nutrient cycle; Bacteria; Environmental biotechnology; Methane; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02685065625100805,"gpt":0.29678619547991,"spread":0.2699355392289019,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002551785,0.0001637848,0.0002628246,0.00009788527,0.0001801328,0.00002205639,0.0003039198,0.0001278602,0.008960774],"category_scores_gemma":[0.00001256409,0.0001551197,0.00004297946,0.0002379013,0.0006691277,0.00009650903,0.0004811341,0.0001712779,0.00131342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001335219,"about_ca_system_score_gemma":0.00001231455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001616525,"about_ca_topic_score_gemma":0.003371606,"domain_scores_codex":[0.9988104,0.0002805883,0.0002278564,0.0003174639,0.00002732292,0.0003364078],"domain_scores_gemma":[0.9995199,0.00003750672,0.0000743141,0.000306292,0.000005492514,0.00005649152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006377185,0.0000488964,0.002038776,0.000004315416,0.00001881822,0.000003476141,0.0004143774,0.00001150009,0.9954049,0.000003700942,0.001641628,0.0003458341],"study_design_scores_gemma":[0.001587887,0.0005475747,0.4770702,0.00001224677,0.00006418127,0.00007784641,0.00008529179,0.00005629245,0.4522362,0.0005740381,0.06703502,0.0006531746],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985736,0.00006005605,0.00001186388,0.00006392894,0.0002050915,0.00027162,0.00001823267,0.00002116566,0.0007744115],"genre_scores_gemma":[0.9977853,0.00001706751,0.001179493,0.0003343145,0.00006548288,0.00001403926,0.00003681464,0.00001441716,0.0005530785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5431687,"threshold_uncertainty_score":0.9994642,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3125841184","doi":"10.1186/s40168-020-00977-9","title":"Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":250,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute on Aging; University of Michigan; Canadian Institute for Advanced Research; Arizona State University; Leakey Foundation; National Institutes of Health; Stony Brook University; National Science Foundation","keywords":"Biology; Microbiome; Gut flora; Zoology; Microbial ecology; Ecology; Primate; Bacteria; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.0121160413258259,"gpt":0.2697764275787639,"spread":0.257660386252938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004734614,0.0002568611,0.000257068,0.0002468774,0.00009663116,0.00007022223,0.0004581446,0.0002371202,0.00006573007],"category_scores_gemma":[0.0001109091,0.0002242612,0.00009614886,0.0007677318,0.00009909873,0.000006100035,0.0002732455,0.0002606155,0.0001636079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000078836,"about_ca_system_score_gemma":0.0003806966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008463062,"about_ca_topic_score_gemma":0.00120848,"domain_scores_codex":[0.9979389,0.0003032799,0.0003838564,0.0006324073,0.0000982344,0.0006433614],"domain_scores_gemma":[0.9991879,0.00007289116,0.00007064544,0.0005073028,0.0000509184,0.0001103496],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000366416,0.0002148867,0.005269261,0.00004355637,0.00001876543,0.0001188189,0.0005326447,0.000007151763,0.9844208,0.00002244348,0.008780137,0.000205147],"study_design_scores_gemma":[0.002395201,0.0006262487,0.5219095,0.0002249385,0.00002479563,0.0004145512,0.0005632864,0.000004049778,0.1920394,0.00005072121,0.2809565,0.0007907565],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947976,0.001020431,0.00004495731,0.003214956,0.0002225466,0.0002962007,0.0002550511,0.0000102841,0.000137946],"genre_scores_gemma":[0.9945204,0.0001004892,0.0005154139,0.003418085,0.0001213886,0.00003245557,0.0004683566,0.00003230564,0.0007910971],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7923813,"threshold_uncertainty_score":0.9145105,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2946966924","doi":"10.1186/s40168-019-0694-6","title":"The skin microbiome of vertebrates","year":2019,"lang":"en","type":"review","venue":"Microbiome","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":248,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of Waterloo","funders":"","keywords":"Microbiome; Biology; Threatened species; Vertebrate; Captivity; Evolutionary biology; Endangered species; Metagenomics; Ecology; Zoology; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0313766388878652,"gpt":0.3296507140403189,"spread":0.2982740751524537,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001654888,0.0003900448,0.001914503,0.0002544608,0.00009171641,0.00002337991,0.0004204551,0.0004241634,0.0002100795],"category_scores_gemma":[0.00004633706,0.0002249824,0.0008933483,0.0004352604,0.0003837889,0.00003067225,0.0001363695,0.000294248,0.001932141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005788567,"about_ca_system_score_gemma":0.0004716906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005282765,"about_ca_topic_score_gemma":0.000001364526,"domain_scores_codex":[0.998353,0.0001315853,0.0007061174,0.000351322,0.00009092237,0.0003670432],"domain_scores_gemma":[0.9983439,0.0002892452,0.0003653337,0.0008361767,0.00008278449,0.00008256085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005900939,0.0003395506,0.00004356204,0.07723191,0.001788588,0.0001167854,0.00005121304,1.534382e-8,0.001471225,0.00008761948,0.3786004,0.5402101],"study_design_scores_gemma":[0.0003609211,0.0000343716,0.00001622923,0.007845647,0.001702433,0.001019159,0.000008920731,2.137972e-7,0.0003006277,0.000009517652,0.9884917,0.0002103104],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004238302,0.9969319,0.000001460444,0.00009440691,0.0005808676,0.0008661717,0.0002561715,0.00003584917,0.001190774],"genre_scores_gemma":[0.00004797653,0.9911963,0.00004120262,0.0001151612,0.00007645866,0.00002970817,0.0005508997,0.00005808266,0.007884251],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6098912,"threshold_uncertainty_score":0.998845,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2752251608","doi":"10.1186/s40168-017-0334-y","title":"Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":248,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Winnipeg; Ministère des Ressources naturelles et des Forêts; Université de Montréal; Université du Québec à Montréal","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Myotis lucifugus; Commensalism; Microbiome; Microbial ecology; Zoology; Ecology; Microbiology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01562855592191787,"gpt":0.2113838794552338,"spread":0.195755323533316,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002928887,0.0001139391,0.0002511723,0.00001637271,0.0003133774,0.00001763891,0.0004876797,0.0001052708,0.0001167257],"category_scores_gemma":[0.00002155746,0.00003674834,0.00005919703,0.0001027029,0.0003778524,0.0000477576,0.0001390287,0.00008441332,0.000006981518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000117499,"about_ca_system_score_gemma":0.000005485458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003723637,"about_ca_topic_score_gemma":0.002330673,"domain_scores_codex":[0.9992793,0.00006035791,0.0002060227,0.0001944443,0.00003907073,0.0002208505],"domain_scores_gemma":[0.999524,0.00008652789,0.0002268428,0.0001121034,0.00003678387,0.00001374558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005259339,0.000138492,0.1435115,0.00001464387,0.00003548383,0.000009028939,0.0004832839,7.555453e-7,0.8547223,0.00002062438,0.0001842607,0.0008270322],"study_design_scores_gemma":[0.0001948667,0.0003630475,0.9896421,0.00003540904,0.00001677804,0.00004810108,0.0007205549,5.279419e-7,0.007977978,0.00001101369,0.0008945432,0.00009505353],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977653,0.0001001285,1.124549e-7,0.001463797,0.00008846483,0.0001446093,0.00008100203,0.000004772275,0.0003518398],"genre_scores_gemma":[0.9996873,0.00001474121,0.00007856289,0.00006664876,0.00003284876,0.00000583153,0.00002561263,5.777952e-7,0.00008793829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8467443,"threshold_uncertainty_score":0.2410277,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2991480638","doi":"10.1186/s40168-019-0761-z","title":"Ochratoxin A induces liver inflammation: involvement of intestinal microbiota","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":245,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Special Fund for Agro-scientific Research in the Public Interest; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Ochratoxin A; Biology; Inflammation; Medical microbiology; Microbial ecology; Microbiology; Ochratoxin; Immunology; Mycotoxin; Bacteria; Food science; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01375340745680787,"gpt":0.1933039116673146,"spread":0.1795505042105067,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001443774,0.0001488012,0.0001966583,0.00002243913,0.00005267307,0.00003496697,0.0003044328,0.0001062565,0.001673308],"category_scores_gemma":[0.000009169003,0.00005448081,0.00009502587,0.0004190738,0.00004809683,0.0001056922,0.0001238583,0.0001023707,0.000432381],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002525455,"about_ca_system_score_gemma":0.000008013223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001106073,"about_ca_topic_score_gemma":0.0001453258,"domain_scores_codex":[0.9991096,0.00003845769,0.0002838106,0.0002496144,0.000108195,0.0002103083],"domain_scores_gemma":[0.9995715,0.00005671155,0.00014872,0.00007796676,0.0000970022,0.00004812088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001287404,0.00006553965,0.001312141,0.00002897434,0.0000160209,0.000001824171,0.0001365371,4.789878e-7,0.9897712,0.0001688414,0.001565089,0.006920467],"study_design_scores_gemma":[0.0001858012,0.0003032924,0.03135386,0.00009688033,0.0000110715,0.00002880278,0.0002177617,0.000002966604,0.9165334,0.00004412546,0.05101009,0.0002119893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974343,0.0002908148,0.000001219489,0.0002886837,0.0001436383,0.0002911381,0.00004637802,0.00003800109,0.001465805],"genre_scores_gemma":[0.9983945,0.00002360087,0.0003366521,0.0001409338,0.0001654481,0.000007156038,0.0001326761,8.881279e-7,0.00079809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07323786,"threshold_uncertainty_score":0.9992393,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4226323283","doi":"10.1186/s40168-022-01234-x","title":"The phyllosphere microbiome shifts toward combating melanose pathogen","year":2022,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":238,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"National Key Research and Development Program of China; Earmarked Fund for China Agriculture Research System; Zhejiang University","keywords":"Phyllosphere; Biology; Microbiome; Microbial ecology; Methylobacterium; Microbiology; Metagenomics; Sphingomonas; Human pathogen; Bacteria; Pseudomonas; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01621986440806735,"gpt":0.2071094417975165,"spread":0.1908895773894491,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003893433,0.0001827802,0.0001660605,0.00001445756,0.002165993,0.0001924844,0.0007569317,0.00005062018,0.001841984],"category_scores_gemma":[0.00001820898,0.00006960565,0.0001584829,0.000511017,0.00008439378,0.0001009109,0.0005398231,0.000363084,0.0001828282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001050474,"about_ca_system_score_gemma":0.00001451576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006393507,"about_ca_topic_score_gemma":0.0003127891,"domain_scores_codex":[0.9986383,0.0002316421,0.000289431,0.0002796426,0.0001211012,0.0004398924],"domain_scores_gemma":[0.9993869,0.0002298215,0.000147262,0.0001270282,0.00004794086,0.00006101544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000267535,0.0001027066,0.0002182267,0.000002965262,0.00002434402,0.000009046173,0.0001670899,0.000002647814,0.9706069,0.00003453342,0.01259944,0.01620537],"study_design_scores_gemma":[0.0001756563,0.0001975816,0.008181538,0.00001181767,0.00001267371,0.0001761387,0.002012325,0.00001439281,0.02948432,0.00008975796,0.9593546,0.0002892495],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940799,0.0007572366,0.000001517428,0.002320942,0.0005836756,0.0002223467,0.001122427,0.00008839669,0.000823505],"genre_scores_gemma":[0.9962838,0.00004223697,0.0000668564,0.0005543589,0.000107248,0.00004102654,0.0005660615,0.000002565313,0.002335793],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9467551,"threshold_uncertainty_score":0.9991331,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2947879944","doi":"10.1186/s40168-018-0604-3","title":"Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":234,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Institute of Nutrition, Metabolism and Diabetes; Alberta Innovates; Crohn's and Colitis Canada; University of Alberta; Women and Children's Health Research Institute; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; Alberta Innovates - Health Solutions","keywords":"Inflammatory bowel disease; Pathogenesis; Immunology; Biology; Ulcerative colitis; Immunoglobulin G; Antibody; Microbiology; Disease; Medicine; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.003202999221478423,"gpt":0.2160739504578891,"spread":0.2128709512364106,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001447418,0.0002103097,0.0001929238,0.0001790534,0.00006336185,0.00004186769,0.0002511845,0.0001911119,0.00007527733],"category_scores_gemma":[0.00001907046,0.0002164026,0.0001010651,0.0002268693,0.00004509935,0.00001019931,0.0001596901,0.0001267588,0.0004814453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000795762,"about_ca_system_score_gemma":0.0002417566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004963533,"about_ca_topic_score_gemma":0.00007974548,"domain_scores_codex":[0.9986561,0.00007421782,0.000308041,0.000470793,0.00006718934,0.0004236547],"domain_scores_gemma":[0.9993869,0.000008875616,0.0001051688,0.0003514242,0.00006961819,0.00007801119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006094925,0.00006884598,0.1887592,0.0001024781,0.00001193826,0.000005863716,0.00006506411,0.000004108294,0.8085577,0.000004862989,0.002311807,0.00004719261],"study_design_scores_gemma":[0.001070923,0.0001250002,0.9014367,0.00002645161,0.00001614426,0.0000214292,0.00005876987,0.000002034894,0.08798746,0.00001181466,0.008908651,0.0003346006],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955766,0.003279906,0.00001216578,0.0000560776,0.0003639511,0.0003817899,0.0001205466,0.00002220959,0.0001868107],"genre_scores_gemma":[0.9967443,0.0005857962,0.00007198232,0.0002205484,0.0001677398,0.00001504043,0.0002724926,0.00003179166,0.001890347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7205702,"threshold_uncertainty_score":0.8824643,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2461711360","doi":"10.1186/s40168-016-0176-z","title":"MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota","year":2016,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":231,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Government of Canada; Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute","keywords":"Metaproteomics; Biology; Metagenomics; Gut flora; Computational biology; Lipidome; Microbiology; Bioinformatics; Genetics; Gene; Immunology; Lipidomics","retraction":null,"screen_n_in":null,"score":{"opus":0.01698193715608017,"gpt":0.2470030957009087,"spread":0.2300211585448285,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002796619,0.0003178167,0.000323561,0.0001949285,0.0002364498,0.00005586696,0.0003422551,0.0002042507,0.00002883658],"category_scores_gemma":[0.00001525801,0.0002439089,0.0001102668,0.0001757724,0.0001544299,0.00001021877,0.0004034212,0.00009535161,0.00007521087],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008117359,"about_ca_system_score_gemma":0.0000868288,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008511353,"about_ca_topic_score_gemma":0.00003892478,"domain_scores_codex":[0.9981847,0.00009667416,0.0002945887,0.0008016224,0.00006478962,0.0005575658],"domain_scores_gemma":[0.9990613,0.000006852347,0.00009445721,0.0005462588,0.00007452187,0.0002165787],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005240203,0.0001264746,0.0002901381,0.00004256018,0.0001111953,0.000001863879,0.0001437083,5.17485e-7,0.9930442,0.0001011477,0.005627423,0.0004583977],"study_design_scores_gemma":[0.001969195,0.0003531897,0.00290166,0.00002958145,0.0000668943,0.0000921732,0.000161631,5.610278e-7,0.9093826,0.00001017882,0.08444855,0.0005838015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956912,0.000361568,0.002018694,0.0004432382,0.00007674631,0.0006913217,0.0001629984,0.00003906709,0.0005151269],"genre_scores_gemma":[0.9826472,0.00005067097,0.007031533,0.0007194522,0.0001271821,0.00002654025,0.0001014175,0.00006221449,0.009233772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08366159,"threshold_uncertainty_score":0.9946318,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2908338457","doi":"10.1186/s40168-018-0608-z","title":"Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Stichting Astma Bestrijding; University of Toronto; Government of Jiangxi Province; Chinese Diabetes Society; ZonMw; Joint Programming Initiative A healthy diet for a healthy life; European Foundation for the Study of Diabetes; Eli Lilly and Company","keywords":"Biology; Phenotype; Gut flora; Medical microbiology; Microbial ecology; Genetics; Immunology; Bacteria; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.004589699741539946,"gpt":0.2430240265864828,"spread":0.2384343268449429,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001926582,0.0001832326,0.0002321691,0.00009867927,0.00004630877,0.00002405986,0.0001641867,0.0001377308,0.00003872925],"category_scores_gemma":[0.00001570654,0.0001300782,0.00007285558,0.0001245334,0.00008087604,0.000005653105,0.0001357173,0.0001336759,0.00003397655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000152382,"about_ca_system_score_gemma":0.00006696518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009833811,"about_ca_topic_score_gemma":0.0001383669,"domain_scores_codex":[0.9990699,0.00007726325,0.0002063991,0.0003292269,0.0000396185,0.0002776187],"domain_scores_gemma":[0.9994802,0.00001146047,0.00008701493,0.0003258475,0.0000254012,0.00007011688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004717894,0.00004085561,0.3593163,0.00001058436,0.00004542687,2.937694e-7,0.00006654995,7.283562e-7,0.6401788,0.00001361379,0.0002162308,0.0000634406],"study_design_scores_gemma":[0.0007694564,0.0002909863,0.9698833,0.00003636018,0.00001282014,0.00003292059,0.00001007485,4.79844e-7,0.0285164,0.00001053786,0.0002924898,0.0001442355],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976735,0.00155465,0.000001200357,0.00008899838,0.00005307807,0.0003859588,0.0001173949,0.000004340289,0.0001208658],"genre_scores_gemma":[0.9988697,0.000345071,0.00007013468,0.0001387347,0.00004352556,0.000003214781,0.00007436508,0.00002167615,0.000433559],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6116624,"threshold_uncertainty_score":0.5304437,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2797126254","doi":"10.1186/s40168-018-0410-y","title":"A human gut phage catalog correlates the gut phageome with type 2 diabetes","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Chinese Academy of Sciences; Major Research Plan; National Natural Science Foundation of China; National Key Research and Development Program of China; York University","keywords":"Biology; Gut flora; Metagenomics; Type 2 diabetes; Feces; Genetics; Microbiology; Gene; Computational biology; Diabetes mellitus; Immunology; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.00662579383566522,"gpt":0.2219785833669539,"spread":0.2153527895312887,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001045507,0.0001840118,0.0001369721,0.00003636019,0.000490428,0.0001019711,0.0003698929,0.00006339901,0.00766526],"category_scores_gemma":[0.000005618624,0.0001169252,0.00005139302,0.0003583175,0.000608574,0.0002341694,0.0002200129,0.0001628416,0.007098572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009093798,"about_ca_system_score_gemma":0.000007650665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000401768,"about_ca_topic_score_gemma":0.0006076889,"domain_scores_codex":[0.9990385,0.00003273292,0.0001651024,0.0003107016,0.00007065026,0.0003823324],"domain_scores_gemma":[0.999426,0.00001741247,0.00008453716,0.0003884936,0.00001965416,0.00006391161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007019319,0.00006116783,0.001164362,0.00000305383,0.00002653766,0.000004901907,0.0003785007,0.000002516621,0.9711692,0.000005448496,0.02665599,0.0005212843],"study_design_scores_gemma":[0.0009776974,0.0009725119,0.2302431,0.00008651969,0.0001435053,0.0002040353,0.0002466687,0.00004524158,0.2920728,0.00008719955,0.4741048,0.0008159988],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942322,0.00006107687,0.00001603985,0.0003358991,0.0003741533,0.0002014829,0.00004121682,0.00006665137,0.004671278],"genre_scores_gemma":[0.9874039,0.00000374456,0.0001667477,0.0007228228,0.0001278265,0.00001018947,0.00005838768,0.00002732585,0.011479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6790964,"threshold_uncertainty_score":0.9936745,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2810934340","doi":"10.1186/s40168-018-0502-8","title":"Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":212,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"B.C. Women's Hospital & Health Centre; University of Toronto; Women's Health Research Institute; University of British Columbia; Lunenfeld-Tanenbaum Research Institute; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Genome British Columbia; University of Saskatchewan","keywords":"Gardnerella vaginalis; Lactobacillus crispatus; Lactobacillus gasseri; Biology; Lactobacillus; Bacterial vaginosis; Pyrosequencing; Mollicutes; Microbiome; Vaginal flora; Physiology; Microbiology; Bioinformatics; Mycoplasma; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01070258879160962,"gpt":0.2369795937683533,"spread":0.2262770049767436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002759892,0.0001361684,0.0001899343,0.0001458121,0.000539769,0.00001654873,0.0002429366,0.0001324583,0.0002179436],"category_scores_gemma":[0.00006639109,0.00009968525,0.00004165624,0.0002583004,0.001862548,0.00006958498,0.0008282796,0.0002062273,0.00006328242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003800043,"about_ca_system_score_gemma":0.00004138696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005220135,"about_ca_topic_score_gemma":0.00005294853,"domain_scores_codex":[0.99902,0.0002015268,0.0001497404,0.000346694,0.00002606352,0.0002559976],"domain_scores_gemma":[0.999272,0.00008300334,0.0000803557,0.0003956631,0.0001481567,0.00002078648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001602375,0.0000796064,0.05467938,0.00003663075,0.00009173379,0.000007759757,0.0004612848,3.283295e-8,0.9430619,0.0000322283,0.0004587877,0.0009304154],"study_design_scores_gemma":[0.0009619705,0.0002463683,0.3740751,0.00003246559,0.00004260605,0.004445654,0.0000777388,4.199975e-7,0.6029661,0.00005500136,0.01693934,0.0001572674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980817,0.0006923248,0.000009579441,0.0001532511,0.0002872448,0.0002876311,0.0001144782,0.00002612356,0.0003476465],"genre_scores_gemma":[0.998014,0.0000316162,0.00005201616,0.00003967376,0.00002613222,0.000002666397,0.000009395553,0.000009609051,0.001814868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3400958,"threshold_uncertainty_score":0.6862637,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2937916685","doi":"10.1186/s40168-019-0652-3","title":"Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":206,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Program on Global Change and Air-Sea Interaction; Fundamental Research Funds for the Central Universities; Natural Environment Research Council; Chinese Academy of Sciences; Sight Research UK; University of British Columbia; National Natural Science Foundation of China; University of Essex","keywords":"Biology; Trench; Microbial ecology; Hydrocarbon; Ecology; Bacteria; Paleontology; Nanotechnology; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.004343848499000115,"gpt":0.1791665570082579,"spread":0.1748227085092578,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002419393,0.0001007561,0.0001381816,0.00002322896,0.00008232405,0.000008833943,0.0003004425,0.00006622379,0.001629622],"category_scores_gemma":[0.000004418261,0.00005127376,0.00008768019,0.0003206129,0.000191261,0.00004852476,0.0002264017,0.0001050839,0.000213014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007411149,"about_ca_system_score_gemma":0.000008983845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002493327,"about_ca_topic_score_gemma":0.00005557866,"domain_scores_codex":[0.9992374,0.0000636517,0.0002391959,0.000175478,0.0001222748,0.0001619932],"domain_scores_gemma":[0.9994131,0.00003060428,0.0001686522,0.0003617303,0.000005047022,0.00002082628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008051269,0.0000268734,0.04077013,0.00001364453,0.00001732726,1.183647e-7,0.000504133,0.0002998358,0.9572513,0.00003863217,0.0008618157,0.0002081247],"study_design_scores_gemma":[0.0004489643,0.00006201721,0.02868196,0.00004991122,0.00004057882,0.00001445398,0.00006835149,0.0006158301,0.9598657,0.0002835653,0.009715071,0.000153574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920104,0.0002192058,0.000004810035,0.0003739265,0.0001905902,0.0003157712,0.00001129015,0.000005822401,0.006868239],"genre_scores_gemma":[0.9904572,0.00001471178,0.0001181131,0.00008490548,0.00001134429,0.00000339766,0.00000727443,0.000009448334,0.009293598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01208817,"threshold_uncertainty_score":0.999283,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124017296","doi":"10.1186/2049-2618-2-7","title":"Bacterial communities on classroom surfaces vary with human contact","year":2014,"lang":"en","type":"article","venue":"Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":202,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"Alfred P. Sloan Foundation","keywords":"Microbiome; Biology; Microbial ecology; Ecology; Microbial population biology; Taxon; Community structure; Human microbiome; Bacteria; Bioinformatics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01121502576707716,"gpt":0.211955985106089,"spread":0.2007409593390119,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002226746,0.0001670925,0.0002126321,0.00003572832,0.0004449545,0.00002653042,0.0004478742,0.0001143505,0.01441254],"category_scores_gemma":[0.000003291944,0.0001372054,0.00003639089,0.00008674568,0.0004026487,0.00009045245,0.0002348828,0.0002790762,0.001481706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006306,"about_ca_system_score_gemma":0.000005542989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001454089,"about_ca_topic_score_gemma":0.008058884,"domain_scores_codex":[0.9989495,0.0004399907,0.0001396991,0.0001470509,0.00004524999,0.0002785276],"domain_scores_gemma":[0.9992814,0.0001477906,0.00007102811,0.000446415,0.000005621222,0.0000477114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001237291,0.0001469492,0.005917635,0.000006188362,0.00001998621,0.00000138132,0.0005899081,0.00007116655,0.9799536,0.0002829274,0.0127603,0.000126154],"study_design_scores_gemma":[0.003194877,0.004410758,0.2921128,0.00008192992,0.00004882341,0.00006323713,0.0004918363,0.00004678414,0.06109031,0.001266081,0.636111,0.001081574],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817703,0.00000274524,0.00001267299,0.000142446,0.0001325029,0.0001134464,0.00002531379,0.00004924092,0.01775133],"genre_scores_gemma":[0.9978608,0.000002277663,0.0001498803,0.0008804189,0.00003779182,0.000003640702,0.0002878247,0.00001551537,0.0007618394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9188634,"threshold_uncertainty_score":0.9992958,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3058215844","doi":"10.1186/s40168-020-00887-w","title":"Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":195,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Joint Programming Initiative A healthy diet for a healthy life","keywords":"Arabinoxylan; Biology; Microbiome; Gut flora; Food science; Propionate; Firmicutes; Lactobacillus; Fermentation; Biochemistry; Polysaccharide; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.008137295883840179,"gpt":0.2293805746745949,"spread":0.2212432787907547,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001768316,0.0003181009,0.0003471304,0.0001748944,0.00007324206,0.00005223268,0.0001893103,0.0002461717,0.00002067922],"category_scores_gemma":[0.00001244209,0.0002701544,0.00002876287,0.0004808861,0.0001029324,0.00002000571,0.0001328157,0.0002088093,0.000009682351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005980813,"about_ca_system_score_gemma":0.0002125493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009269715,"about_ca_topic_score_gemma":0.004731217,"domain_scores_codex":[0.9981742,0.0001374307,0.000342781,0.000817538,0.00009127108,0.0004367933],"domain_scores_gemma":[0.9992219,0.000005867815,0.000112815,0.0002912328,0.00007952351,0.0002886969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001891294,0.0002171419,0.2127651,0.0001585408,0.00001998892,0.00003149699,0.001397235,0.00001977562,0.7829623,0.000004022024,0.0002214245,0.0003116218],"study_design_scores_gemma":[0.007015263,0.001786376,0.9674423,0.000236608,0.00001587519,0.00009212743,0.0001155286,0.0001642168,0.021228,0.000006312218,0.00129852,0.0005988512],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972293,0.0001065758,0.0001975649,0.00115452,0.00002163106,0.001014115,0.0002326456,0.00002123384,0.00002242433],"genre_scores_gemma":[0.9939287,0.00002035438,0.002240413,0.002349661,0.00006638643,0.00001969479,0.001270319,0.00004214953,0.00006232103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7617344,"threshold_uncertainty_score":0.9999751,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129657560","doi":"10.1186/s40168-015-0079-4","title":"Xylo-oligosaccharides and virginiamycin differentially modulate gut microbial composition in chickens","year":2015,"lang":"en","type":"article","venue":"Microbiome","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":194,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; McGill University; Ste. Anne's Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Virginiamycin; Prebiotic; Biology; Cecum; Gut flora; Lactobacillus; Propionate; Microbiology; Lactobacillus reuteri; Bacteroides; Food science; Antibiotics; Bacteria; Biochemistry; Ecology; Genetics; Fermentation","retraction":null,"screen_n_in":null,"score":{"opus":0.02197149676008498,"gpt":0.2120264127206276,"spread":0.1900549159605426,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009076688,0.000122657,0.0001761743,0.0000262112,0.00006620192,0.00004287896,0.0001082826,0.0001010665,0.0001256196],"category_scores_gemma":[0.000004148512,0.00005629353,0.00003927789,0.0001607984,0.00008478192,0.00007564687,0.0000749838,0.00009489886,0.00005667123],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000224558,"about_ca_system_score_gemma":0.00000445883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003092117,"about_ca_topic_score_gemma":0.000460813,"domain_scores_codex":[0.9992386,0.00006689846,0.0001890974,0.0002422965,0.00004594866,0.0002171377],"domain_scores_gemma":[0.9997669,0.00002542353,0.00004921185,0.00003212195,0.0000321801,0.00009415506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008027049,0.00009650753,0.002119481,0.000002911904,0.000003981208,0.00000411631,0.00008452219,0.000001074748,0.9952354,0.00008091737,0.001269955,0.001020888],"study_design_scores_gemma":[0.002203982,0.0008030082,0.918067,0.00009436491,0.00001765742,0.0001285447,0.0002275975,0.0001765778,0.05071485,0.003587058,0.02326012,0.0007192903],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979322,0.000114285,0.000003667507,0.001492214,0.0001056699,0.0001255512,0.00008104589,0.00003682573,0.0001085387],"genre_scores_gemma":[0.9988844,0.00002802508,0.00009143425,0.000541251,0.0001163983,0.000004104745,0.0002522049,0.000001010615,0.00008121545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9445205,"threshold_uncertainty_score":0.2295584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2773610445","doi":"10.1186/s40168-017-0375-2","title":"MetaLab: an automated pipeline for metaproteomic data analysis","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":187,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Ontario Genomics; Genome Canada","keywords":"Metaproteomics; Metagenomics; Profiling (computer programming); Biology; Computational biology; Identification (biology); Pipeline (software); Computer science; Software; Bioinformatics; Data mining; Ecology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05355176978710362,"gpt":0.383271716526838,"spread":0.3297199467397344,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002229147,0.0001721631,0.0003102713,0.00009188989,0.0004895476,0.000179469,0.001787171,0.0001135075,0.0002566546],"category_scores_gemma":[0.00004827494,0.0001654487,0.0001319822,0.000132161,0.00009832679,0.0003523923,0.0004003173,0.00009120165,0.00002230017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000423675,"about_ca_system_score_gemma":0.00003068738,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001249312,"about_ca_topic_score_gemma":0.00005728247,"domain_scores_codex":[0.9988202,0.000005979369,0.0002737064,0.0005981263,0.00005428334,0.0002476589],"domain_scores_gemma":[0.995717,0.00001719543,0.0002991833,0.003811669,0.00007887912,0.00007600208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001273489,0.00006805761,0.00006308239,0.00002409142,0.0002428513,6.865507e-7,0.000007733365,0.00001294444,0.995407,0.0002024281,0.00213565,0.001822697],"study_design_scores_gemma":[0.0003865897,0.000007330918,0.00004066733,0.000006023866,0.0008319791,0.000004057441,0.000007937745,0.08536246,0.8439925,0.0009161913,0.06816407,0.0002801559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2067269,0.0001792001,0.7760613,0.001253317,0.00005507622,0.0009045774,0.01089846,0.002146174,0.001775005],"genre_scores_gemma":[0.4919289,0.000021041,0.497146,0.00008033936,0.0001224086,0.0002746284,0.006664949,0.00005099983,0.003710757],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.285202,"threshold_uncertainty_score":0.6746804,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}