{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":12,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":12,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e93e6dbf7550","filters":{"venue":"Mitochondrial DNA Part A"}},"results":[{"id":"W2014108841","doi":"10.3109/19401736.2014.1003924","title":"The human mitochondrial genome may code for more than 13 proteins","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Mitochondrial DNA; Biology; Human mitochondrial genetics; Genetic code; Human genome; Computational biology; Genetics; Repertoire; Genome; DNA; Mitochondrion; Translation (biology); Gene; Evolutionary biology; Messenger RNA","authors":[{"name":"Charlotte Capt","is_ca":true},{"name":"Marco Passamonti","is_ca":false},{"name":"Sophie Breton","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03526516268099253,"gpt":0.2889865381190835,"spread":0.253721375438091,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003253918,0.0004394503,0.000390774,0.00006909463,0.000685162,0.0001550372,0.0006848142,0.0004869807,0.00005329268],"category_scores_gemma":[0.0006523735,0.0003421518,0.0003803344,0.0001553668,0.0003683658,0.00001309263,0.0002152771,0.0002419473,0.0001338397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005029493,"about_ca_system_score_gemma":0.0002736702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004411021,"about_ca_topic_score_gemma":0.001015992,"domain_scores_codex":[0.9970818,0.0002546637,0.0006120223,0.0008862623,0.0003699785,0.0007953406],"domain_scores_gemma":[0.9978719,0.00006086428,0.0002423549,0.001071701,0.0003442945,0.0004089181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001281395,0.00009632125,0.0001615217,0.00001234096,0.00009493002,0.000006044764,0.0002191537,0.00006044035,0.8509321,0.0007811455,0.1461512,0.0002033939],"study_design_scores_gemma":[0.003691491,0.001068264,0.0001030953,0.00001025027,0.00005613158,0.00003432283,0.0001698576,0.00002117404,0.07586293,0.00050584,0.9180354,0.0004412706],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.872551,0.002174376,0.04130322,0.007397598,0.04964704,0.01255119,0.001811359,0.000413778,0.0121505],"genre_scores_gemma":[0.3546348,0.0004215869,0.04261399,0.006617659,0.1939355,0.0169336,0.0124747,0.00123815,0.37113],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7750692,"threshold_uncertainty_score":0.999903,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2770248213","doi":"10.1080/24701394.2017.1404042","title":"The intron landscape of the mtDNA <i>cytb</i> gene among the Ascomycota: introns and intron-encoded open reading frames","year":2017,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Intron; Group I catalytic intron; ORFS; Group II intron; Biology; Genetics; RNA splicing; Gene; Open reading frame; Homing endonuclease; GenBank; RNA; Peptide sequence","authors":[{"name":"Tuhin K. Guha","is_ca":true},{"name":"Alvan Wai","is_ca":true},{"name":"Sahra-Taylor Mullineux","is_ca":true},{"name":"Georg Hausner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01070345966700673,"gpt":0.2456673551620809,"spread":0.2349638954950742,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0005095711,0.0002134601,0.0002504174,0.0000124514,0.001389168,0.0004664669,0.001796636,0.0001832135,0.0000206163],"category_scores_gemma":[0.0006099755,0.0001077176,0.000130853,0.00004023777,0.0004809064,0.00002051971,0.001226245,0.0001839616,0.000005075136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008644007,"about_ca_system_score_gemma":0.00007628126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001406776,"about_ca_topic_score_gemma":0.0003848994,"domain_scores_codex":[0.998537,0.0002624758,0.000304845,0.000371783,0.0001951433,0.0003287669],"domain_scores_gemma":[0.9978591,0.0001033333,0.0003711718,0.001535324,0.00006084468,0.00007020509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000240397,0.00002493941,0.002996302,0.000008336222,0.0001215797,8.462796e-7,0.0001470132,0.000006768921,0.9808409,0.0009283626,0.01020465,0.004479933],"study_design_scores_gemma":[0.0008078752,0.0001553403,0.003250569,0.00005702129,0.00007176055,0.000008164051,0.000177271,0.00005315122,0.8730423,0.001176029,0.1209972,0.0002033467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871042,0.001368675,0.0008481167,0.003798026,0.00226751,0.001490578,0.00004615541,0.00001135125,0.003065363],"genre_scores_gemma":[0.9947761,0.0005251771,0.0006158408,0.0001753324,0.001630515,0.0002118349,0.0000141394,0.00003282432,0.002018281],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1107925,"threshold_uncertainty_score":0.9999109,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2921633038","doi":"10.1080/24701394.2019.1580272","title":"Intron-encoded ribosomal proteins and N-acetyltransferases within the mitochondrial genomes of fungi: here today, gone tomorrow?","year":2019,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetics; Gene; Intron; Mitochondrial DNA; Genome; MT-RNR1; Group II intron; Nuclear gene; Ribosomal protein; Intergenic region; Homing endonuclease; Group I catalytic intron; Ribosomal RNA; RNA; Ribosome; RNA splicing","authors":[{"name":"Alvan Wai","is_ca":true},{"name":"Chen Shen","is_ca":true},{"name":"Andrell Carta","is_ca":true},{"name":"Alexandra Dansen","is_ca":true},{"name":"P.W. Crous","is_ca":false},{"name":"Georg Hausner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007936810751477478,"gpt":0.2163546466412093,"spread":0.2084178358897318,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001062631,0.0003254064,0.0004260282,0.00003965744,0.0001742443,0.00004989452,0.0002932214,0.0002105373,0.0001304794],"category_scores_gemma":[0.00006260462,0.0002223795,0.000183076,0.0001168514,0.0002571761,0.00001130374,0.000203071,0.0001742399,0.0000362208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001216718,"about_ca_system_score_gemma":0.0001089588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006896655,"about_ca_topic_score_gemma":0.0002608876,"domain_scores_codex":[0.9982508,0.000121846,0.000444147,0.0005492964,0.0002577912,0.0003761032],"domain_scores_gemma":[0.9990658,0.00004282282,0.0001513526,0.0005324613,0.0001066719,0.0001009124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007343602,0.000097425,0.002225614,0.00006884097,0.0002086686,0.000002673955,0.0003627621,0.00003226329,0.9925766,0.0002842544,0.002354797,0.001051754],"study_design_scores_gemma":[0.004094528,0.00194932,0.001261544,0.0001289778,0.0001662421,0.00004060477,0.001041002,0.00005514264,0.8819699,0.0001504867,0.1084571,0.0006852418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9873434,0.007353768,0.0002677566,0.0005030168,0.002100129,0.001405664,0.0001592322,0.00002342828,0.0008436028],"genre_scores_gemma":[0.9907473,0.0009859472,0.001955198,0.0001563954,0.002824268,0.0001803048,0.0001110525,0.00005399264,0.002985572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1106067,"threshold_uncertainty_score":0.9068373,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1637602462","doi":"10.3109/19401736.2015.1053075","title":"The complete mitochondrial genome sequence of <i>Eimeria innocua</i> (Eimeriidae, Coccidia, Apicomplexa)","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Coccidia and coccidiosis research","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Eimeriidae; Coccidia; Eimeria; Apicomplexa; Mitochondrial DNA; Genetics; Genome; Gene; Ribosomal RNA; Parasite hosting","authors":[{"name":"Mian Abdul Hafeez","is_ca":true},{"name":"Vladimír Vrba","is_ca":false},{"name":"John R. Barta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0939161970272209,"gpt":0.2755612898863277,"spread":0.1816450928591068,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000427513,0.0003620865,0.000562471,0.00003156513,0.0005676044,0.0002446851,0.001353485,0.0001838901,0.0004582872],"category_scores_gemma":[0.0004219767,0.0001491274,0.0002999502,0.0009148099,0.0005174936,0.0002123997,0.0004049666,0.0003430139,0.0004129505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007480239,"about_ca_system_score_gemma":0.0001340244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009574142,"about_ca_topic_score_gemma":0.001575267,"domain_scores_codex":[0.9961423,0.0004940957,0.0007724682,0.0006472882,0.001027107,0.0009167813],"domain_scores_gemma":[0.9976768,0.000693248,0.0002921789,0.000384014,0.0004684606,0.0004852256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005047118,0.0001227315,0.0006415799,0.000005224814,0.00006051988,0.000009150262,0.0001363466,0.00000634981,0.9684076,0.0005745031,0.01861665,0.01091467],"study_design_scores_gemma":[0.0009058573,0.0008596871,0.003566296,0.00002401222,0.00003292147,0.00001794006,0.0002793852,0.00007238951,0.01595607,0.0008016042,0.9770648,0.000419059],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9785431,0.001921156,0.00002164197,0.003243946,0.006126133,0.001589679,0.0006870973,0.0001883013,0.00767895],"genre_scores_gemma":[0.9820158,0.000417547,0.0006263087,0.000572946,0.01093073,0.000462879,0.0008447884,0.00001791763,0.004111121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9584481,"threshold_uncertainty_score":0.6081237,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2992042314","doi":"10.1080/24701394.2019.1695788","title":"An A10398G mitochondrial DNA alteration is related to increased risk of breast cancer, and associates with Her2 positive receptor","year":2019,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Mitochondrial DNA; Breast cancer; Biology; Cancer; Malignancy; Cancer research; Lung cancer; Mitochondrion; Genetics; Internal medicine; Medicine; Gene","authors":[{"name":"Mohammad Jahani","is_ca":false},{"name":"Azita Azimi Meibody","is_ca":false},{"name":"Talie Karimi","is_ca":false},{"name":"Mohammad Mehdi Banoei","is_ca":true},{"name":"Massoud Houshmand","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004213962795417351,"gpt":0.2295727718111262,"spread":0.2253588090157089,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001544933,0.0003664537,0.0004908228,0.0001135373,0.0001477178,0.00006368209,0.0002041184,0.0004445809,0.0005610226],"category_scores_gemma":[0.0001060058,0.0003267014,0.0001310423,0.0002488517,0.0001063348,0.0000376422,0.00007593372,0.0002133709,0.00008384805],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004391767,"about_ca_system_score_gemma":0.0001673354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006568096,"about_ca_topic_score_gemma":0.0004349377,"domain_scores_codex":[0.997537,0.000396042,0.0004922828,0.0008909079,0.0002814191,0.0004023705],"domain_scores_gemma":[0.9984132,0.00005451982,0.00034509,0.0005625588,0.0003291602,0.0002954842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003683966,0.0001613944,0.01670558,0.00001564896,0.000229581,0.000002158551,0.0005225257,0.00006245455,0.9693124,0.00005529801,0.008692547,0.0005564228],"study_design_scores_gemma":[0.009896173,0.006021685,0.02336916,0.0002077518,0.0003542295,0.00007739111,0.0003147086,0.0001974754,0.9163512,0.0001013729,0.041908,0.001200881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934662,0.0001118644,0.0003481524,0.0003954246,0.002779565,0.001113124,0.001433607,0.00003506131,0.0003169775],"genre_scores_gemma":[0.9819579,0.0003418372,0.005053834,0.001405031,0.003849238,0.0002989604,0.002101743,0.0001559475,0.004835475],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05296125,"threshold_uncertainty_score":0.9999185,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1829500297","doi":"10.3109/19401736.2015.1060472","title":"Complete mitochondrial genomes for <i>Icelus spatula, Aspidophoroides olrikii</i> and <i>Leptoclinus maculatus</i> : pan-Arctic marine fishes from Canadian waters","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Mitochondrial DNA; Transfer RNA; Gene; Marine species; Arctic; Genome; Zoology; Population; Ribosomal RNA; Ecology; Genetics; RNA","authors":[{"name":"Taylor Swanburg","is_ca":true},{"name":"John B. Horne","is_ca":true},{"name":"Shauna M. Baillie","is_ca":true},{"name":"Stanley D. King","is_ca":true},{"name":"Meghan C. McBride","is_ca":true},{"name":"Michael P. Mackley","is_ca":true},{"name":"Ian G. Paterson","is_ca":true},{"name":"Ian Bradbury","is_ca":true},{"name":"Paul Bentzen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0209805754732192,"gpt":0.2234246747806876,"spread":0.2024440993074684,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001302907,0.0004754474,0.0005312552,0.0000826492,0.0002786512,0.0001436861,0.0003401588,0.0002908708,0.00002297627],"category_scores_gemma":[0.0001706503,0.0004592272,0.0002634258,0.00008649878,0.0002121777,0.000005153137,0.0003150734,0.0001320476,0.00002520569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000774558,"about_ca_system_score_gemma":0.0002989313,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.02661032,"about_ca_topic_score_gemma":0.06288391,"domain_scores_codex":[0.9975163,0.00009375721,0.0004874282,0.0008988544,0.0002083662,0.0007952972],"domain_scores_gemma":[0.9983649,0.00007068224,0.0001405542,0.0005711096,0.0002253472,0.0006273639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001404916,0.00009595853,0.02558511,0.0000560681,0.0008705852,0.00002553983,0.000594628,0.0001074961,0.8871893,0.00006524594,0.07939107,0.004614039],"study_design_scores_gemma":[0.004297952,0.0007119864,0.004626284,0.00002273076,0.0002278108,0.00001806604,0.0001951828,0.000056471,0.01848988,0.001261242,0.9692783,0.0008140857],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858114,0.003689149,0.0001312933,0.0008977626,0.005262916,0.001417467,0.001772758,0.00001803569,0.0009992797],"genre_scores_gemma":[0.973538,0.0006355129,0.01070049,0.001925337,0.008603199,0.0004706356,0.002498756,0.000141576,0.001486513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8898872,"threshold_uncertainty_score":0.999786,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1593066244","doi":"10.3109/19401736.2015.1028032","title":"The complete mitochondrial genome of <i>Nyctalus noctula</i> (Chiroptera: Vespertilionidae)","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Biology; Mitochondrial DNA; Stop codon; Genetics; Transfer RNA; Start codon; Gene; Genome; RNA; Nucleotide","authors":[{"name":"Kenan Qian","is_ca":false},{"name":"Dan‐Na Yu","is_ca":false},{"name":"Hongyi Cheng","is_ca":false},{"name":"Kenneth B. Storey","is_ca":true},{"name":"Jia‐Yong Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04056477312992597,"gpt":0.2249861395343679,"spread":0.184421366404442,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002198916,0.0002448578,0.0004077572,0.00001237288,0.0006346575,0.00004541174,0.0005390272,0.0002183887,0.0001364533],"category_scores_gemma":[0.000249112,0.00008379074,0.0001983756,0.0002429377,0.0006115473,0.00008738018,0.0002436433,0.0002057,0.0002812832],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003182011,"about_ca_system_score_gemma":0.00002543001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001385681,"about_ca_topic_score_gemma":0.001870967,"domain_scores_codex":[0.9981037,0.0002361025,0.0004890272,0.0004016258,0.0002331274,0.000536371],"domain_scores_gemma":[0.9988922,0.0004311553,0.0001905309,0.0001629095,0.0001554983,0.0001677008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001586529,0.0002305047,0.005188477,0.000006005918,0.0002080179,0.0000137571,0.0005097252,0.00001112353,0.9368045,0.0007369036,0.0477474,0.006956996],"study_design_scores_gemma":[0.00105068,0.0009834949,0.03543454,0.00001116856,0.00005067102,0.00001697977,0.0004308616,0.00001929104,0.003810776,0.001010317,0.9568602,0.0003209783],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9857958,0.001165477,0.000004285446,0.003495043,0.005090846,0.0004643045,0.0001072143,0.00007115053,0.003805862],"genre_scores_gemma":[0.9917549,0.0001605529,0.0002715249,0.0006487666,0.004840733,0.0001246953,0.0001433927,0.000003727707,0.002051654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9329938,"threshold_uncertainty_score":0.4881337,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024885060","doi":"10.3109/19401736.2014.958730","title":"Association of genetic variations in the mitochondrial D-loop with β-thalassemia","year":2014,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Hemoglobinopathies and Related Disorders","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Mitochondrial DNA; Genotype; Biology; Thalassemia; Genetics; Single-nucleotide polymorphism; Mitochondrion; Oxidative stress; Phenotype; Mitochondrial disease; Disease; Allele; Haplotype; Beta thalassemia; Gene; Internal medicine; Endocrinology; Medicine","authors":[{"name":"Leila Jamali","is_ca":false},{"name":"Mohammad Mehdi Banoei","is_ca":true},{"name":"Elham Khalili","is_ca":false},{"name":"Sepideh Dadgar","is_ca":false},{"name":"Massoud Houshmand","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00695977279564942,"gpt":0.2249869797583079,"spread":0.2180272069626585,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000224419,0.000172121,0.0003556217,0.0001165101,0.00008649129,0.00002726005,0.0001492918,0.0002525348,0.0001059958],"category_scores_gemma":[0.0005172883,0.0001102832,0.000112291,0.0004927292,0.00005668738,0.00006237461,0.00001899908,0.0003234218,0.00004919538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009191068,"about_ca_system_score_gemma":0.0001444837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001126526,"about_ca_topic_score_gemma":0.0002144524,"domain_scores_codex":[0.9981902,0.0002319397,0.0004620816,0.0002654367,0.0005272227,0.0003231037],"domain_scores_gemma":[0.9989123,0.0002671772,0.0002251306,0.0003928152,0.0001253973,0.00007719274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004541514,0.004551246,0.4888877,0.0005423466,0.001561097,0.0001491414,0.01564187,0.001816328,0.2192883,0.005892823,0.242079,0.01504862],"study_design_scores_gemma":[0.04850787,0.005368993,0.4113938,0.001221354,0.002817768,0.0002129887,0.002344332,0.005808913,0.007586437,0.002234372,0.5110304,0.001472806],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788611,0.0001263724,0.002985166,0.005721193,0.001958798,0.001468417,0.00001627755,0.00006042745,0.00880228],"genre_scores_gemma":[0.9856587,0.00009633577,0.006406883,0.0008802242,0.002459208,0.000221653,0.00009988061,0.00006095204,0.004116182],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2689514,"threshold_uncertainty_score":0.4497217,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006210376","doi":"10.3109/19401736.2015.1015003","title":"Mitogenome metadata: current trends and proposed standards","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Metadata; Current (fluid); Biology; Evolutionary biology; Computational biology; Information retrieval; Ecology; Computer science; Bioinformatics; World Wide Web; Oceanography; Geology","authors":[{"name":"Jeff H. T. Strohm","is_ca":true},{"name":"Rodger Gwiazdowski","is_ca":true},{"name":"Robert Hanner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04531240202277172,"gpt":0.3164125111192881,"spread":0.2711001090965164,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002414777,0.0001449019,0.0001435145,0.0000758918,0.00009060889,0.0001382526,0.0001602535,0.00008719441,0.00003339632],"category_scores_gemma":[0.0001902266,0.0001340749,0.0000627962,0.0001404951,0.00010773,0.00001434436,0.00007877183,0.00006982726,0.00003039819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000217709,"about_ca_system_score_gemma":0.0001531402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004709499,"about_ca_topic_score_gemma":0.00002371904,"domain_scores_codex":[0.9987597,0.00008420803,0.0002617376,0.000413356,0.0002928853,0.0001880925],"domain_scores_gemma":[0.9990097,0.000005167897,0.00009353846,0.0004392487,0.0002619719,0.0001903565],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002565919,0.000159071,0.0002842695,0.00002050835,0.0000807661,0.000001136078,0.0001635842,0.000003977625,0.584938,0.001934598,0.3997611,0.01239643],"study_design_scores_gemma":[0.0008915429,0.0001174913,0.0002637018,0.000005995065,0.00002887166,0.000006251949,0.00003972019,0.000007498074,0.1021575,0.00005423055,0.8962596,0.0001675289],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9094404,0.01550171,0.020401,0.003977398,0.03257399,0.001649404,0.001773508,0.0002432975,0.0144393],"genre_scores_gemma":[0.9577771,0.0004040966,0.001860086,0.0001857416,0.00365707,0.0001002894,0.002480621,0.00006882382,0.03346617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4964986,"threshold_uncertainty_score":0.5467417,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2336782554","doi":"10.3109/19401736.2015.1115497","title":"The complete mitochondrial genome of the freshwater fish <i>Galaxias platei</i> and a comparison with other species of the genus <i>Galaxias</i> (faraway, so close?)","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Natural Sciences and Engineering Research Council of Canada; Dalhousie University; Ministerio de Educación, Gobierno de Chile; National Geographic Society","keywords":"Mitochondrial DNA; Biology; Phylogenetic tree; Genome; Freshwater fish; Genus; Evolutionary biology; Galaxias; Phylogenetics; Fish <Actinopterygii>; Zoology; Genetics; Gene; Fishery; Physics","authors":[{"name":"Iván Vera‐Escalona","is_ca":true},{"name":"Evelyn Habit","is_ca":false},{"name":"Daniel E. Ruzzante","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02094308231651095,"gpt":0.2195316416319061,"spread":0.1985885593153951,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001594908,0.0003142654,0.0004204526,0.0000193334,0.000372355,0.00007011346,0.0006794903,0.000152258,0.000008286013],"category_scores_gemma":[0.00007617612,0.0001568272,0.0002044659,0.0001329811,0.0011204,0.000002716248,0.0005375447,0.0001698832,0.00000301319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001597057,"about_ca_system_score_gemma":0.0001544299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001664286,"about_ca_topic_score_gemma":0.003586217,"domain_scores_codex":[0.998109,0.0001915761,0.0005166957,0.0004123721,0.0003792895,0.0003910826],"domain_scores_gemma":[0.9983695,0.00005909978,0.0003701011,0.00090926,0.000196065,0.00009594001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008731953,0.00008945543,0.02015035,0.00002138017,0.0003353014,5.803305e-7,0.001160882,0.0001432964,0.9505653,0.0001671417,0.026394,0.00009915321],"study_design_scores_gemma":[0.001853406,0.0004151741,0.01157396,0.00002743086,0.00009429524,0.00001364006,0.0003143262,0.00001636867,0.1521681,0.0001264654,0.8331557,0.0002411697],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936485,0.001652889,0.0000335249,0.0007908132,0.001674124,0.0007815469,0.0004498803,0.000004357824,0.000964364],"genre_scores_gemma":[0.9956843,0.0001393734,0.0004548862,0.0003750317,0.001460508,0.00006657613,0.0000223413,0.00005252471,0.001744426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8067617,"threshold_uncertainty_score":0.6395227,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972739887","doi":"10.3109/19401736.2015.1007356","title":"The complete mitochondrial genome sequence of <i>Diptychus maculatus</i> Steindachner (Cypriniformes: Cyprinidae)","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Northwestern University; University of Calgary; National Science Foundation","keywords":"Biology; Mitochondrial DNA; Cypriniformes; Heavy strand; Phylogenetic tree; Cyprinidae; Gene; Genetics; Genome; Ribosomal RNA; Evolutionary biology; Transfer RNA; RNA; Fishery; Fish <Actinopterygii>","authors":[{"name":"Dekui He","is_ca":false},{"name":"Yangyang Liang","is_ca":false},{"name":"Chunhua Li","is_ca":false},{"name":"Chaojun Wei","is_ca":false},{"name":"Yifeng Chen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04184629163425406,"gpt":0.2600089492821372,"spread":0.2181626576478831,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002271272,0.0003459962,0.0003869012,0.00003856818,0.0002506344,0.0000689709,0.0006754732,0.0001976779,0.00001221831],"category_scores_gemma":[0.0001998694,0.00026336,0.0002551426,0.0001478566,0.0004114756,0.000003053986,0.0004118765,0.0001504808,0.0000501498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003312193,"about_ca_system_score_gemma":0.0002572854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000628071,"about_ca_topic_score_gemma":0.0001433815,"domain_scores_codex":[0.9977233,0.0001303844,0.0006193774,0.0005646619,0.0003846013,0.0005776886],"domain_scores_gemma":[0.9982505,0.00005239269,0.000269212,0.0008956739,0.0002945054,0.0002377399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004526821,0.00005475629,0.0008260942,0.00001193318,0.0001826121,0.0000040176,0.0001794813,0.0001713985,0.990071,0.0003948594,0.007163078,0.0004880693],"study_design_scores_gemma":[0.002047563,0.0006151804,0.001191367,0.00001352261,0.00006119875,0.00002291019,0.0001996079,0.00003253204,0.04229096,0.000487239,0.9526275,0.000410429],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822143,0.003038605,0.0003806992,0.0003535369,0.006096344,0.000960189,0.000530699,0.00001767559,0.006407998],"genre_scores_gemma":[0.9868979,0.0006869636,0.003297882,0.0003222029,0.004823285,0.0001953802,0.0003033288,0.0000881126,0.003384982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9477801,"threshold_uncertainty_score":0.9999819,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2042884073","doi":"10.3109/19401736.2014.1003863","title":"Intraspecific comparison of two complete mitogenome sequences from the Korean water deer (Cervidae: <i>Hydropotes inermis argyropus</i> )","year":2015,"lang":"en","type":"article","venue":"Mitochondrial DNA Part A","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Department of Environment and Conservation","funders":"","keywords":"Biology; Intraspecific competition; Zoology; Phylogenetic tree; Genetics; Gene","authors":[{"name":"Hye Ri Kim","is_ca":false},{"name":"Yung Chul Park","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0443550696080204,"gpt":0.2981154428656226,"spread":0.2537603732576022,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000138518,0.0002363702,0.0003068094,0.00002497689,0.0001252761,0.00003659003,0.0005774145,0.0001828291,0.00006903712],"category_scores_gemma":[0.00004464901,0.0001508886,0.0001499117,0.00009343563,0.0003663083,0.000004793089,0.0002337776,0.0001485999,0.00005079585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001532589,"about_ca_system_score_gemma":0.00005173233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003870743,"about_ca_topic_score_gemma":0.0003369723,"domain_scores_codex":[0.9984222,0.000164171,0.0004463806,0.0004635642,0.000190157,0.0003134937],"domain_scores_gemma":[0.9988158,0.00003122988,0.0001416378,0.0007425183,0.0001421027,0.0001267032],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006648539,0.00007471176,0.002434221,0.000002701607,0.00006913384,0.000001561774,0.0002029474,0.00004904825,0.9664966,0.0003190635,0.02987088,0.0004125988],"study_design_scores_gemma":[0.0004697463,0.0001711862,0.00007867748,0.00000910812,0.00003691326,0.000005059988,0.00009129297,0.00005342983,0.6989242,0.000953096,0.2990284,0.0001789144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989452,0.0009823225,0.005880031,0.001156305,0.0005532576,0.0005062725,0.0002815746,0.00004227116,0.001145932],"genre_scores_gemma":[0.9924116,0.00005777086,0.003835714,0.0004102706,0.001304915,0.0001072758,0.001696859,0.00003068128,0.0001448971],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2691575,"threshold_uncertainty_score":0.6153058,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}