{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":432,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":432,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"ba30e0f6780d","filters":{"venue":"Molecular Phylogenetics and Evolution"}},"results":[{"id":"W2087076382","doi":"10.1016/s1055-7903(02)00326-3","title":"An index of substitution saturation and its application","year":2002,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1548,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"University of Ottawa","keywords":"Biology; Substitution (logic); Phylogenetics; Index (typography); Entropy (arrow of time); Topological index; Phylogenetic tree; Set (abstract data type); Computational biology; Evolutionary biology; Gene; Computer science; Genetics; Mathematics; Combinatorics; Physics","authors":[{"name":"Xuhua Xia","is_ca":true},{"name":"Zheng Xie","is_ca":false},{"name":"Marco Salemi","is_ca":false},{"name":"Lu Chen","is_ca":false},{"name":"Yong Wang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007005536367243911,"gpt":0.2094808382356199,"spread":0.202475301868376,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008678045,0.000888187,0.001694798,0.007376459,0.001644097,0.002206258,0.001717479,0.001570702,0.005140816],"category_scores_gemma":[0.03754874,0.0005039707,0.001260905,0.007239632,0.003391016,0.005196179,0.003654066,0.002004398,0.001308983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001517421,"about_ca_system_score_gemma":0.001083921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000960734,"about_ca_topic_score_gemma":0.0006032952,"domain_scores_codex":[0.9963698,0.001698204,0.0003271382,0.0006541057,0.0007257061,0.0002250061],"domain_scores_gemma":[0.9699896,0.02229747,0.001768172,0.003174505,0.00191173,0.0008585455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001347816,0.0002558723,0.05659202,0.0007473144,0.0006835185,0.0006965683,0.001728385,0.08689398,0.02941924,0.4602445,0.006511859,0.3548788],"study_design_scores_gemma":[0.00007886394,0.0006251224,0.01909597,0.0001358578,0.0002761259,0.003090432,0.0008305915,0.4242199,0.02135381,0.504456,0.02559878,0.000238418],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1640654,0.003488561,0.8034263,0.000811521,0.0003625026,0.0002423547,0.002225343,0.002372657,0.02300535],"genre_scores_gemma":[0.8072897,0.00117556,0.1840243,0.0002572298,0.0004292025,0.0004527674,0.001289851,0.0006675066,0.004413902],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.008678045,"threshold_uncertainty_score":0.04589444,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1987854012","doi":"10.1016/s1055-7903(02)00027-1","title":"One hundred and seventeen clades of euagarics","year":2002,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":719,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Research Committee, Aristotle University of Thessaloniki","keywords":"Biology; Clade; Monophyly; Agaricales; Agaricomycetes; Phylogenetic tree; Systematics; Taxon; Zoology; Synapomorphy; Evolutionary biology; Phylogenetic nomenclature; Maximum parsimony; Phylogenetics; Taxonomy (biology); Botany; Basidiomycota; Genetics","authors":[{"name":"Jean‐Marc Moncalvo","is_ca":false},{"name":"Rytas Vilgalys","is_ca":false},{"name":"Scott A. Redhead","is_ca":true},{"name":"J.E. Johnson","is_ca":false},{"name":"Timothy Y. James","is_ca":false},{"name":"M. Catherine Aime","is_ca":false},{"name":"Valérie Hofstetter","is_ca":false},{"name":"Sebastiaan J. W. Verduin","is_ca":false},{"name":"Ellen Larsson","is_ca":false},{"name":"Timothy J. Baroni","is_ca":false},{"name":"R. Greg Thorn","is_ca":true},{"name":"Stig Jacobsson","is_ca":false},{"name":"H. Clémençon","is_ca":false},{"name":"Orson K. Miller","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01185185747432077,"gpt":0.1721626841907893,"spread":0.1603108267164686,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003733396,0.0003355243,0.0004538591,0.001234949,0.001592991,0.001196029,0.0004203053,0.0007089471,0.004843139],"category_scores_gemma":[0.0008794856,0.0001656842,0.0002381479,0.001855441,0.0007867103,0.0007551803,0.001184462,0.000540803,0.001177329],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002643369,"about_ca_system_score_gemma":0.0003938079,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008642689,"about_ca_topic_score_gemma":0.002437614,"domain_scores_codex":[0.9996338,0.00004612164,0.00003729755,0.000130482,0.00005520127,0.00009709723],"domain_scores_gemma":[0.9991923,0.000247779,0.0001677753,0.0001601707,0.00008831338,0.0001436169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002948096,0.000323463,0.2771388,0.0007495828,0.0003845404,0.001479028,0.01964822,0.0009387602,0.2729748,0.01331631,0.00320796,0.4068905],"study_design_scores_gemma":[0.0001052873,0.000360959,0.8154584,0.0003338341,0.0002181934,0.003129158,0.008032805,0.001210359,0.01629043,0.002922546,0.1518664,0.00007166102],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841443,0.001039148,0.003638057,0.0001485505,0.00003901465,0.00004436795,0.0005829318,0.00009015439,0.01027346],"genre_scores_gemma":[0.9883913,0.0005581127,0.00433018,0.0003198102,0.00002713059,0.00004935472,0.001684269,0.0000522273,0.00458772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004843139,"threshold_uncertainty_score":0.01620191,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066307121","doi":"10.1016/j.ympev.2008.09.009","title":"Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants","year":2008,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":538,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Nuclear gene; Chloroplast; Mitochondrial DNA; Genome; Gene; Chloroplast DNA; Genetics; Plant evolution; Botany","authors":[{"name":"Guy Drouin","is_ca":true},{"name":"Hanane Daoud","is_ca":true},{"name":"Junnan Xia","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008873722577391933,"gpt":0.2138706432612511,"spread":0.2049969206838591,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000528101,0.0001941572,0.0003110414,0.001147936,0.0004656041,0.0005328905,0.0002744201,0.000514365,0.0008758569],"category_scores_gemma":[0.001249111,0.0002250742,0.0002599692,0.0009300577,0.0005266967,0.0003971906,0.0003053416,0.0005031437,0.0002598604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003695725,"about_ca_system_score_gemma":0.0001733716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008542487,"about_ca_topic_score_gemma":0.002193088,"domain_scores_codex":[0.9997033,0.00008522582,0.00002858663,0.00009548281,0.00005458849,0.00003276374],"domain_scores_gemma":[0.9988546,0.0005797442,0.0001976246,0.00006471577,0.0001485645,0.000154587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002802033,0.00007717888,0.26519,0.0003828611,0.0007098261,0.0004979346,0.001492403,0.003861508,0.7018291,0.002893302,0.0002566158,0.02000731],"study_design_scores_gemma":[0.00005714171,0.0002893597,0.9646921,0.00003228082,0.0002351618,0.00168876,0.0007024541,0.006816302,0.0219036,0.001650725,0.001882633,0.00004958771],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999217,0.0002615918,0.0001758644,0.00001576411,0.000002465575,8.141521e-7,0.0001677144,0.000004434139,0.0001542035],"genre_scores_gemma":[0.9988182,0.0001289806,0.0002769548,0.0000217877,0.000005310748,0.00000281985,0.0005514501,0.000008417546,0.0001859474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001147936,"threshold_uncertainty_score":0.002930045,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135545511","doi":"10.1016/j.ympev.2006.08.024","title":"Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":453,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Science Foundation","keywords":"Biology; Clade; Maximum parsimony; Phylogenetics; Monophyly; Phylogenetic tree; Basidiomycota; Evolutionary biology; Genetics; Botany; Gene","authors":[{"name":"P. Brandon Matheny","is_ca":false},{"name":"Zheng Wang","is_ca":false},{"name":"Manfred Binder","is_ca":false},{"name":"Judd M. Curtis","is_ca":false},{"name":"Young Woon Lim","is_ca":true},{"name":"R. Henrik Nilsson","is_ca":false},{"name":"Karen W. Hughes","is_ca":false},{"name":"Valérie Hofstetter","is_ca":false},{"name":"Joseph F. Ammirati","is_ca":false},{"name":"Conrad L. Schoch","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003117257349189149,"gpt":0.1783137271111591,"spread":0.17519646976197,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004122983,0.0004508901,0.0004649856,0.001103294,0.0007273039,0.001078917,0.0003500539,0.0005543961,0.0009785346],"category_scores_gemma":[0.0006108726,0.000305565,0.0002609506,0.0006725348,0.0005008887,0.0007115965,0.000445851,0.0008206165,0.0004357043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003631716,"about_ca_system_score_gemma":0.0002479188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001374253,"about_ca_topic_score_gemma":0.002042789,"domain_scores_codex":[0.9998134,0.00001971026,0.000009899924,0.00008257813,0.00003205093,0.00004235329],"domain_scores_gemma":[0.9994081,0.0001573273,0.000132905,0.00009079532,0.0001010537,0.0001097472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006970512,0.00002904815,0.01923004,0.0002091557,0.00008048188,0.0003681264,0.0004399609,0.001122217,0.9258693,0.001390816,0.0001462501,0.05041753],"study_design_scores_gemma":[0.00006197549,0.000388003,0.7728356,0.000143747,0.0002377018,0.003573822,0.0008412239,0.00578774,0.1797973,0.002832073,0.03339878,0.0001020082],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9832213,0.007749444,0.004939646,0.0001511012,0.00002316664,0.000008977915,0.0002962579,0.00009068973,0.003519484],"genre_scores_gemma":[0.9926032,0.001524497,0.003301931,0.00009916427,0.0000290408,0.00001187949,0.0008510409,0.00004050554,0.001538824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001374253,"threshold_uncertainty_score":0.003273487,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976284211","doi":"10.1016/j.ympev.2006.05.021","title":"Primate molecular divergence dates","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":347,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Health Sciences Centre","funders":"National Center for Research Resources","keywords":"Biology; Molecular clock; Divergence (linguistics); Primate; Evolutionary biology; Context (archaeology); Macaque; Clade; Phylogenetic tree; Range (aeronautics); Extant taxon; Hominidae; Phylogenetics; Paleontology; Biological evolution; Genetics; Gene","authors":[{"name":"Michael E. Steiper","is_ca":false},{"name":"Nathan M. Young","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005307654496802297,"gpt":0.1959949003690709,"spread":0.1906872458722687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001178986,0.0003200641,0.0003705863,0.003083078,0.0008451326,0.001274083,0.0003620719,0.0003845504,0.01262123],"category_scores_gemma":[0.002678623,0.0002809578,0.0003018556,0.002616425,0.0006017814,0.001009238,0.0006884079,0.0008770148,0.002315906],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001252804,"about_ca_system_score_gemma":0.0003190548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002110476,"about_ca_topic_score_gemma":0.00323722,"domain_scores_codex":[0.9995345,0.000129885,0.0000203303,0.0001752859,0.00009127904,0.00004867412],"domain_scores_gemma":[0.9989949,0.0003545302,0.0001536829,0.0001482985,0.0002321505,0.000116572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.002612572,0.00009050544,0.2628611,0.001559701,0.001552608,0.0008420461,0.009478979,0.009984999,0.1149359,0.1577856,0.01005865,0.4282373],"study_design_scores_gemma":[0.00005762354,0.0001838434,0.7678741,0.0002922402,0.0002652878,0.002478207,0.0008701737,0.003407908,0.01244273,0.02532157,0.1867477,0.00005849331],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8819847,0.01837437,0.00820708,0.0007148215,0.0001296229,0.00002194952,0.006125273,0.0002226652,0.08421946],"genre_scores_gemma":[0.9844418,0.003395951,0.002689825,0.0001672494,0.00009337303,0.00002453378,0.003165898,0.00009991522,0.005921334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01262123,"threshold_uncertainty_score":0.0422222,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165175840","doi":"10.1016/j.ympev.2014.04.003","title":"A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families","year":2014,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":280,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Royal British Columbia Museum","funders":"U.S. National Library of Medicine; Academy of Finland; National Institutes of Health; National Science Foundation","keywords":"Biology; Phylogenetic tree; Taxon; Monophyly; Supermatrix; Evolutionary biology; Phylogenetics; Genetics; Gene; Ecology; Clade","authors":[{"name":"Jolanta Miądlikowska","is_ca":false},{"name":"Frank Kauff","is_ca":false},{"name":"Filip Högnabba","is_ca":false},{"name":"Jeffrey C. Oliver","is_ca":false},{"name":"Katalin Molnár","is_ca":false},{"name":"Emily Fraker","is_ca":false},{"name":"Ester Gaya","is_ca":false},{"name":"Josef Hafellner","is_ca":false},{"name":"Valérie Hofstetter","is_ca":false},{"name":"Cécile Gueidan","is_ca":false},{"name":"Mónica A.G. Otálora","is_ca":false},{"name":"Brendan P. Hodkinson","is_ca":false},{"name":"Martin Kukwa","is_ca":false},{"name":"Robert Lücking","is_ca":false},{"name":"Curtis R. Björk","is_ca":true},{"name":"Harrie J. M. Sipman","is_ca":false},{"name":"Ana Rosa Burgaz","is_ca":false},{"name":"Arne Thell","is_ca":false},{"name":"Alfredo Passo","is_ca":false},{"name":"Leena Myllys","is_ca":false},{"name":"Trevor Goward","is_ca":true},{"name":"Samantha Fernández-Brime","is_ca":false},{"name":"Geir Hestmark","is_ca":false},{"name":"James C. Lendemer","is_ca":false},{"name":"H. Thorsten Lumbsch","is_ca":false},{"name":"Michaela Schmull","is_ca":false},{"name":"Conrad L. Schoch","is_ca":false},{"name":"Emmanuël Sérusiaux","is_ca":false},{"name":"David R. Maddison","is_ca":false},{"name":"A. Elizabeth Arnold","is_ca":false},{"name":"François Lutzoni","is_ca":false},{"name":"Soili Stenroos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007930264425125278,"gpt":0.1871719835142786,"spread":0.1792417190891533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000580327,0.0007997093,0.0009818195,0.006051481,0.002068117,0.001283353,0.000542454,0.000431452,0.01099458],"category_scores_gemma":[0.001756562,0.0004084521,0.0009294208,0.007810215,0.0003798054,0.0009620655,0.00133273,0.00110493,0.003699716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007052184,"about_ca_system_score_gemma":0.001625614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002105244,"about_ca_topic_score_gemma":0.006391769,"domain_scores_codex":[0.9994511,0.00008130703,0.00005455396,0.0002129418,0.0001185724,0.00008153267],"domain_scores_gemma":[0.998507,0.0003531149,0.0002745104,0.0002303733,0.0003927769,0.0002422079],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002323334,0.000240383,0.04098765,0.002833092,0.0004851265,0.0006248672,0.002717437,0.002846904,0.679337,0.004745988,0.005299776,0.2575585],"study_design_scores_gemma":[0.0002254332,0.001468136,0.5855901,0.00170161,0.002933298,0.002336354,0.003980074,0.02097406,0.08092112,0.01009566,0.2895634,0.0002106507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7641291,0.008277043,0.1007257,0.0004265338,0.0002012536,0.0006684504,0.1030483,0.001431973,0.02109171],"genre_scores_gemma":[0.6939581,0.00334677,0.1629917,0.0002472307,0.0001333268,0.001078096,0.1309302,0.0006378507,0.006676673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01099458,"threshold_uncertainty_score":0.03678054,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163313816","doi":"10.1016/j.ympev.2004.04.018","title":"A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution","year":2004,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":272,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"National Institute of Neurological Disorders and Stroke","keywords":"Biology; Polyploid; Vicariance; Phylogeography; Biological dispersal; Molecular clock; Evolutionary biology; Phylogenetics; Ecology; Zoology; Ploidy; Genetics","authors":[{"name":"Ben J. Evans","is_ca":true},{"name":"Darcy B. Kelley","is_ca":false},{"name":"R. C. Tinsley","is_ca":false},{"name":"Don J. Melnick","is_ca":false},{"name":"David C. Cannatella","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005413757466313065,"gpt":0.2063982853744377,"spread":0.2009845279081247,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000267519,0.0001481026,0.0002039136,0.001178509,0.000605021,0.000471672,0.000216093,0.0003523281,0.001925149],"category_scores_gemma":[0.0007104425,0.0001520398,0.0001418484,0.0009932918,0.0004579688,0.0005778287,0.0003194803,0.0004124421,0.0001977659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002882885,"about_ca_system_score_gemma":0.0002276089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001762896,"about_ca_topic_score_gemma":0.002963047,"domain_scores_codex":[0.9999381,0.00001281688,0.000004565756,0.00002164292,0.000008040349,0.00001491533],"domain_scores_gemma":[0.9995635,0.0001198094,0.0001532004,0.00002781063,0.00005320227,0.00008245049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001484597,0.0001211025,0.305116,0.0003417644,0.000180698,0.0007542355,0.006012697,0.001849671,0.6056617,0.006864123,0.0002781528,0.07133526],"study_design_scores_gemma":[0.00004491718,0.0002231284,0.9814719,0.00009624387,0.0001180222,0.001573651,0.001472205,0.003411286,0.005246981,0.002208451,0.004110026,0.00002328413],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998833,0.0003207517,0.0003795054,0.00006986916,0.000001209532,0.000001911976,0.00006108177,0.000003609075,0.0003290694],"genre_scores_gemma":[0.9988419,0.000232828,0.0006046919,0.00002093794,0.00000410109,0.000002173673,0.000112651,0.000003134941,0.0001776327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001925149,"threshold_uncertainty_score":0.006440222,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2000579908","doi":"10.1016/j.ympev.2006.12.005","title":"Patterns of evolution of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; DNA barcoding; Mitochondrial DNA; Phylogenetic tree; Evolutionary biology; Divergence (linguistics); Cytochrome c oxidase; Phylogenetics; Genetics; Gene; Mitochondrion","authors":[{"name":"Amanda D. Roe","is_ca":true},{"name":"Felix A. H. Sperling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006636692258285468,"gpt":0.2164858539456227,"spread":0.2098491616873372,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008894535,0.0001877598,0.0003832534,0.002088491,0.000777339,0.001236304,0.0007262224,0.0007278173,0.001780024],"category_scores_gemma":[0.002558452,0.0003422014,0.0002666186,0.002233054,0.001278396,0.001038447,0.0006725624,0.001092952,0.0003625255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00109303,"about_ca_system_score_gemma":0.000425705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003060545,"about_ca_topic_score_gemma":0.005975564,"domain_scores_codex":[0.9992104,0.0001434416,0.00005672516,0.0003375073,0.000123497,0.0001284769],"domain_scores_gemma":[0.9974995,0.0007071791,0.0007299124,0.0001965998,0.0006171789,0.0002497055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001550319,0.000164419,0.5349299,0.0002734345,0.0003287178,0.0002591098,0.004209889,0.002068379,0.3931161,0.009843176,0.0004716943,0.05278478],"study_design_scores_gemma":[0.00002856984,0.00008714693,0.9835512,0.00002978186,0.00005289899,0.0003415458,0.0008926399,0.00269248,0.00683019,0.003755252,0.001703886,0.00003437689],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995066,0.001044224,0.001610152,0.0001943627,0.000008239129,0.000006573431,0.0003083674,0.00001292261,0.001749029],"genre_scores_gemma":[0.9983557,0.00021703,0.0007412921,0.00004515003,0.00001042537,0.000004512805,0.0001782023,0.0000097531,0.0004378385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003060545,"threshold_uncertainty_score":0.007930517,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111642174","doi":"10.1016/j.ympev.2007.03.016","title":"A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding","year":2007,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":234,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of New Brunswick","funders":"","keywords":"Biology; DNA barcoding; Internal transcribed spacer; Genus; Evolutionary biology; Zoology; Ecology; Ribosomal RNA; Genetics; Gene","authors":[{"name":"Christopher E. Lane","is_ca":true},{"name":"Sandra C. Lindstrom","is_ca":true},{"name":"Gary W. Saunders","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01248435194921217,"gpt":0.2117318098264611,"spread":0.199247457877249,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002442924,0.0002063294,0.0001003316,0.001174093,0.0006488094,0.0004095477,0.0001989573,0.0002867794,0.000720871],"category_scores_gemma":[0.0004754156,0.0001133176,0.0001047891,0.0006024259,0.000290652,0.00034939,0.0003482085,0.0002284154,0.000124284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000338888,"about_ca_system_score_gemma":0.000426867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007183415,"about_ca_topic_score_gemma":0.01824263,"domain_scores_codex":[0.9999131,0.00001080936,0.000009822739,0.00003288344,0.00001968283,0.000013781],"domain_scores_gemma":[0.9995052,0.00008899689,0.0001280445,0.00004031462,0.0001746099,0.00006283188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002261463,0.00004854835,0.2107487,0.0001087981,0.00003695894,0.000194148,0.001154396,0.0003496045,0.7512207,0.0003646219,0.00005780641,0.03548956],"study_design_scores_gemma":[0.000005401512,0.0001195806,0.9781945,0.00001513924,0.00003454557,0.0003808711,0.0009069564,0.0009116469,0.01666398,0.0001004411,0.002659794,0.000007085786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983353,0.0001601652,0.0005800894,0.00002134052,0.000001453806,0.000007873427,0.0001145524,0.000005814145,0.0007734986],"genre_scores_gemma":[0.9939062,0.0002532443,0.00425721,0.0000269188,0.0000034685,0.00001613505,0.000386569,0.000002722914,0.00114747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007183415,"threshold_uncertainty_score":0.01428318,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2035886321","doi":"10.1016/j.ympev.2007.06.006","title":"A molecular phylogeny of the genus Gammarus (Crustacea: Amphipoda) based on mitochondrial and nuclear gene sequences","year":2007,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Invertebrate Taxonomy and Ecology","field":"Agricultural and Biological Sciences","cited_by":219,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; Chinese Academy of Sciences","keywords":"Paraphyly; Biology; Monophyly; Gammarus; Phylogenetics; Clade; Phylogenetic tree; Amphipoda; Zoology; Evolutionary biology; Genus; Molecular phylogenetics; Nuclear gene; Mitochondrial DNA; Gene; Crustacean; Genetics","authors":[{"name":"Zhonge Hou","is_ca":true},{"name":"Jinzhong Fu","is_ca":true},{"name":"Shuqiang Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007527627777676097,"gpt":0.1799611430804049,"spread":0.1724335153027288,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001037427,0.0003903876,0.0002148613,0.0008211714,0.0004384441,0.0005443085,0.0002448525,0.0003019598,0.0008964318],"category_scores_gemma":[0.0002756505,0.0001614879,0.000218168,0.0006051689,0.0002692526,0.0003464872,0.0002116669,0.0005978824,0.0004666058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003145558,"about_ca_system_score_gemma":0.0006451255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002501107,"about_ca_topic_score_gemma":0.003432663,"domain_scores_codex":[0.9999626,0.000005763112,0.000003147594,0.00001370995,0.000008306142,0.000006526179],"domain_scores_gemma":[0.999774,0.00004716161,0.00005473369,0.00001812484,0.00005407363,0.00005188737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006569006,0.00008555548,0.03724552,0.000410267,0.0001278375,0.0005815093,0.000676663,0.002447809,0.8589903,0.001241698,0.001165793,0.09637015],"study_design_scores_gemma":[0.00009706168,0.0009212465,0.8850169,0.0007036713,0.0007486065,0.002637017,0.0007423792,0.02094823,0.03849872,0.003371913,0.04622887,0.00008525819],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867687,0.002835418,0.005586835,0.0003258696,0.00004918797,0.00003682083,0.001160163,0.0001652574,0.003071816],"genre_scores_gemma":[0.9709689,0.002690155,0.01868059,0.0001577972,0.00004358946,0.00003219577,0.005437538,0.00004710152,0.001942085],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002501107,"threshold_uncertainty_score":0.004973173,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090297108","doi":"10.1016/s1055-7903(02)00023-4","title":"Phylogeny and biogeography of Triatominae (Hemiptera: Reduviidae): molecular evidence of a New World origin of the Asiatic clade","year":2002,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":214,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Eye Institute; Fundação Nacional de Saúde; University of British Columbia; Akademie Věd České Republiky; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Paraphyly; Triatominae; Biology; Reduviidae; Monophyly; Biogeography; Zoology; Clade; Evolutionary biology; Phylogenetics; Hemiptera; Ecology","authors":[{"name":"Václav Hypša","is_ca":false},{"name":"David F. Tietz","is_ca":false},{"name":"Jan Zrzavý","is_ca":false},{"name":"Ryan O. M. Rego","is_ca":false},{"name":"Cléber Galvão","is_ca":false},{"name":"José Jurberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02273969900343485,"gpt":0.2148921288533824,"spread":0.1921524298499475,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002643006,0.0001682879,0.000180928,0.0008776096,0.0004072494,0.0004770478,0.0002023234,0.0002159044,0.0007760075],"category_scores_gemma":[0.0003628347,0.0001528851,0.0001505734,0.000673348,0.0003456651,0.0004685074,0.0002543702,0.0004089657,0.0001858448],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002766291,"about_ca_system_score_gemma":0.0002065457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002999807,"about_ca_topic_score_gemma":0.004676224,"domain_scores_codex":[0.9998862,0.00002187532,0.00001099135,0.00004827079,0.00001555392,0.00001718534],"domain_scores_gemma":[0.9994711,0.0001017442,0.0001960472,0.00003825608,0.0001103676,0.00008254412],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004029267,0.00008856558,0.6697152,0.0001563764,0.0001233021,0.0003472625,0.004472485,0.0004684454,0.277602,0.0007342874,0.00015949,0.04572959],"study_design_scores_gemma":[0.00000695375,0.00007800129,0.9955058,0.00001791573,0.00003630678,0.0005164381,0.0005371249,0.0005754343,0.001456187,0.0001041264,0.001160394,0.000005356843],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984577,0.0004647186,0.0002790361,0.00002907329,0.000001677513,0.000002393784,0.00004517864,0.000003484257,0.0007168274],"genre_scores_gemma":[0.998728,0.0003737043,0.0004570392,0.00002551359,0.000003329905,0.00000300595,0.0001757049,0.000003507622,0.00023008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002999807,"threshold_uncertainty_score":0.005964696,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131069667","doi":"10.1016/j.ympev.2012.02.025","title":"Evolutionary and biogeographic history of weasel-like carnivorans (Musteloidea)","year":2012,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":211,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Ministerstwo Edukacji i Nauki; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Mustelidae; Biology; Lineage (genetic); Ecology; Zoology; Clade; Evolutionary biology; Ecological niche; Badger; Phylogeography; Phylogenetic tree; Weasel; Marten; Predation; Habitat","authors":[{"name":"Jun J. Sato","is_ca":false},{"name":"Mieczysław Wolsan","is_ca":false},{"name":"Francisco J. Prevosti","is_ca":false},{"name":"Guillermo D’Elía","is_ca":false},{"name":"Colleen Begg","is_ca":false},{"name":"Keith S. Begg","is_ca":false},{"name":"Tetsuji Hosoda","is_ca":false},{"name":"Kevin L. Campbell","is_ca":true},{"name":"Hitoshi Suzuki","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009512123025818544,"gpt":0.1812855841898718,"spread":0.1717734611640532,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001987711,0.0001519687,0.0001819643,0.001412223,0.0009907736,0.0006099758,0.0004292584,0.0003488566,0.00227619],"category_scores_gemma":[0.0003281754,0.0001509544,0.0001152686,0.0008103757,0.0007738287,0.0005222858,0.0005149976,0.0003386314,0.0003097175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007529526,"about_ca_system_score_gemma":0.000304844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0114474,"about_ca_topic_score_gemma":0.04399048,"domain_scores_codex":[0.9999096,0.00001411762,0.000005072107,0.00003721818,0.000009871575,0.00002403051],"domain_scores_gemma":[0.9998273,0.00003751297,0.00005147709,0.00001347097,0.00002811742,0.00004212415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009237067,0.0001490672,0.6928535,0.0001577449,0.0001560245,0.0005588215,0.009942736,0.0009272856,0.2071778,0.003014445,0.0002523973,0.08388649],"study_design_scores_gemma":[0.000008491191,0.00006815213,0.9937218,0.00001843289,0.0000255659,0.0005846205,0.001725801,0.0007141506,0.0009704161,0.0003015789,0.001850487,0.00001051843],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999042,0.0002036512,0.00005510334,0.00001700425,6.084144e-7,0.000001492181,0.00002005119,0.000001691493,0.0006584386],"genre_scores_gemma":[0.9991466,0.0001464947,0.0001923445,0.00001692839,0.000001638344,0.000002398687,0.00008190968,0.000002883996,0.000408785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0114474,"threshold_uncertainty_score":0.02276152,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121701758","doi":"10.1016/j.ympev.2006.11.001","title":"Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Environment Research Council; Canadian Institute for Advanced Research","keywords":"Biology; Phylogenetic tree; Monophyly; Protist; Phylogenetics; Ribosomal DNA; Evolutionary biology; Ribosomal RNA; Clade; Genetics; Gene","authors":[{"name":"David Moreira","is_ca":false},{"name":"Sophie von der Heyden","is_ca":false},{"name":"David Bass","is_ca":false},{"name":"Purificación López‐García","is_ca":false},{"name":"Ema E. Chao","is_ca":false},{"name":"Thomas Cavalier‐Smith","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004672444689653664,"gpt":0.1890892030932813,"spread":0.1844167584036277,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006108211,0.0006298312,0.0007363064,0.001126302,0.000915339,0.001408677,0.0003659314,0.0005958328,0.002679528],"category_scores_gemma":[0.001234617,0.0003149666,0.0004418523,0.0009683075,0.00067152,0.0009763416,0.0008411715,0.0006676087,0.0008101639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003528578,"about_ca_system_score_gemma":0.000385062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001141113,"about_ca_topic_score_gemma":0.003507706,"domain_scores_codex":[0.999775,0.00004384603,0.0000125662,0.00008948523,0.00003685719,0.00004239753],"domain_scores_gemma":[0.9988623,0.0004172899,0.0002106514,0.0001390194,0.0001304378,0.0002404464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001562477,0.00007239129,0.1707459,0.0005389352,0.0006101195,0.0003172499,0.001997687,0.002378587,0.7755448,0.001491391,0.0005839233,0.04415661],"study_design_scores_gemma":[0.0001114044,0.0003834215,0.967653,0.00007765882,0.0007847834,0.0008018701,0.001369275,0.006775729,0.01367355,0.002547697,0.005757242,0.00006439813],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881826,0.001156957,0.005100057,0.0001693806,0.00001408465,0.00001479797,0.0009500267,0.0002087092,0.004203231],"genre_scores_gemma":[0.9957224,0.0002732347,0.002172551,0.00007326432,0.00001336785,0.000009274971,0.001361308,0.00004815411,0.0003263926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002679528,"threshold_uncertainty_score":0.008963883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2112441964","doi":"10.1016/j.ympev.2013.08.011","title":"Molecular phylogenetic reconstructions identify East Asia as the cradle for the evolution of the cosmopolitan genus Myotis (Mammalia, Chiroptera)","year":2013,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":194,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Biology; Clade; Lineage (genetic); Genus; Taxon; Zoology; Monophyly; Phylogenetic tree; Molecular phylogenetics; Sister group; Old World; Ecology; Molecular clock; Evolutionary biology","authors":[{"name":"Manuel Rüedi","is_ca":false},{"name":"Benoît Stadelmann","is_ca":false},{"name":"Yann Gager","is_ca":false},{"name":"Emmanuel Douzery","is_ca":false},{"name":"Charles M. Francis","is_ca":true},{"name":"Liang‐Kong Lin","is_ca":false},{"name":"Antonio Guillén-Servent","is_ca":false},{"name":"Alice Cibois","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009380628062407135,"gpt":0.2050765016423989,"spread":0.1956958735799918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004201668,0.0003552337,0.000229351,0.001028391,0.0008182118,0.0007641157,0.000235337,0.0003567351,0.003030005],"category_scores_gemma":[0.0004834533,0.0001756911,0.0002398448,0.001125741,0.0005175265,0.0007530606,0.0006692478,0.0006682608,0.0006562659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004535842,"about_ca_system_score_gemma":0.0003255295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002808817,"about_ca_topic_score_gemma":0.005813614,"domain_scores_codex":[0.9999145,0.00001773058,0.000007881085,0.00002543766,0.00001397104,0.00002052228],"domain_scores_gemma":[0.9995319,0.00008607648,0.0001821911,0.00004742428,0.00007731417,0.00007517912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008467964,0.0001426807,0.5621355,0.0003408855,0.0005355318,0.001430751,0.004621134,0.002458187,0.3127635,0.007473252,0.0007951863,0.1064565],"study_design_scores_gemma":[0.00001762548,0.0001166059,0.9820539,0.0001211665,0.0001820181,0.0008607235,0.001784479,0.002521906,0.00302378,0.001826789,0.007470426,0.00002053181],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901037,0.001611067,0.002099145,0.0002314281,0.00001287472,0.000006687263,0.0001500939,0.00002908504,0.00575583],"genre_scores_gemma":[0.9972072,0.0007227268,0.001164315,0.00009937713,0.00001245866,0.000003593913,0.0002168345,0.00001333217,0.0005601184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003030005,"threshold_uncertainty_score":0.01013637,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979353217","doi":"10.1016/j.ympev.2010.02.020","title":"Multilocus phylogeny and rapid radiations in Neotropical cichlid fishes (Perciformes: Cichlidae: Cichlinae)","year":2010,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":179,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"","keywords":"Biology; Monophyly; Cichlid; Zoology; Clade; Sister group; Tribe; Phylogenetics; Taxon; Ecology; Fish <Actinopterygii>; Fishery","authors":[{"name":"Hernán López‐Fernández","is_ca":true},{"name":"Kirk O. Winemiller","is_ca":false},{"name":"Rodney L. Honeycutt","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005924647719936724,"gpt":0.2145165014381566,"spread":0.2085918537182199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005342702,0.0001848621,0.0002136332,0.001449231,0.0006545279,0.0005632655,0.000369169,0.0003657455,0.001419893],"category_scores_gemma":[0.001164436,0.0002911479,0.0002104079,0.0008684033,0.000757386,0.0003754674,0.0008104738,0.0005953857,0.0001277907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005321456,"about_ca_system_score_gemma":0.0002566546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007134611,"about_ca_topic_score_gemma":0.01964321,"domain_scores_codex":[0.999773,0.00004818626,0.00001296222,0.00008977071,0.00003431983,0.00004171558],"domain_scores_gemma":[0.9989373,0.000248237,0.0003907941,0.00009024232,0.0002043353,0.000129027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006762178,0.00004825777,0.8696173,0.00007458019,0.0003996929,0.0002214633,0.004534385,0.0004811871,0.1018728,0.0007956373,0.000231471,0.02104701],"study_design_scores_gemma":[0.000006958236,0.00001314723,0.9991089,0.000004440667,0.00001875167,0.00007219385,0.0002338091,0.0001483674,0.0001710618,0.00006811243,0.0001506552,0.000003658441],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994704,0.0001588533,0.0000757599,0.00002009669,0.000001216119,0.000001062702,0.00003416949,0.000002120476,0.0002362748],"genre_scores_gemma":[0.9995135,0.00009309134,0.0001511379,0.00002385117,0.000003868259,0.00000325883,0.00007686092,0.000004432503,0.0001300474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007134611,"threshold_uncertainty_score":0.0141862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162719416","doi":"10.1016/j.ympev.2003.08.012","title":"Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Cisco Systems","keywords":"Biology; Salvelinus; Sister group; Phylogenetics; Salmo; Evolutionary biology; Phylogenetic tree; Zoology; Oncorhynchus; Nuclear gene; Mitochondrial DNA; Systematics; Salmonidae; Trout; Genetics; Clade; Fishery; Gene; Taxonomy (biology)","authors":[{"name":"Bernard J. Crespi","is_ca":true},{"name":"Michael J Fulton","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01636725024740228,"gpt":0.2200500278291352,"spread":0.2036827775817329,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001785327,0.0005244576,0.0008814696,0.001997559,0.0009584146,0.001717244,0.0005033807,0.0006223097,0.0009114098],"category_scores_gemma":[0.004364678,0.0007334457,0.0004957552,0.002645891,0.001094974,0.001384801,0.001499071,0.001087642,0.001004701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006750475,"about_ca_system_score_gemma":0.001149569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002369691,"about_ca_topic_score_gemma":0.008732571,"domain_scores_codex":[0.9990191,0.0002719254,0.00009664916,0.0003025919,0.0002547797,0.0000548363],"domain_scores_gemma":[0.9963341,0.001020096,0.0006892422,0.0008743406,0.0008129553,0.0002692632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006039456,0.00006821715,0.1370597,0.0009850551,0.0006489201,0.000232999,0.001653928,0.004988207,0.7234073,0.003313188,0.0006867584,0.1263519],"study_design_scores_gemma":[0.0001263806,0.0005072292,0.8981916,0.000693523,0.001751359,0.00101498,0.001404986,0.01437117,0.03866656,0.01432701,0.02872114,0.0002241759],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9050316,0.006524898,0.07701119,0.0004646846,0.00004913058,0.00005323795,0.00369081,0.0005213423,0.006653251],"genre_scores_gemma":[0.9526122,0.002482342,0.03894738,0.0002801293,0.00005985447,0.00006685443,0.004655019,0.0002464181,0.0006498335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002369691,"threshold_uncertainty_score":0.009441793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090538418","doi":"10.1016/j.ympev.2006.11.012","title":"A nuclear phylogeny of the Florideophyceae (Rhodophyta) inferred from combined EF2, small subunit and large subunit ribosomal DNA: Establishing the new red algal subclass Corallinophycidae","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"","keywords":"Biology; Polyphyly; Maximum parsimony; Monophyly; Ribosomal DNA; Phylogenetic tree; Systematics; Evolutionary biology; Phylogenetics; Subclass; Lineage (genetic); Taxon; Botany; Genetics; Clade; Gene; Taxonomy (biology)","authors":[{"name":"Line Le Gall","is_ca":true},{"name":"Gary W. Saunders","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005665472998508394,"gpt":0.1562039626750788,"spread":0.1505384896765704,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002875364,0.0002950235,0.0002769795,0.0005117323,0.0005000231,0.0007113571,0.0002667644,0.0003429343,0.001156503],"category_scores_gemma":[0.0005303753,0.0001804313,0.0001767814,0.0005513589,0.0003693392,0.0004903575,0.0003472572,0.0006216014,0.0004788319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005247799,"about_ca_system_score_gemma":0.0006097339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006627575,"about_ca_topic_score_gemma":0.01539348,"domain_scores_codex":[0.9999073,0.0000133031,0.000005622002,0.00003112824,0.00002378299,0.00001883732],"domain_scores_gemma":[0.9995887,0.00008419305,0.00005894659,0.00005568325,0.0001113966,0.0001010253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005569517,0.00002956304,0.04183375,0.0001745951,0.00005759765,0.0001866796,0.0007996677,0.0006996187,0.9107475,0.0019351,0.0003184735,0.04266056],"study_design_scores_gemma":[0.000111492,0.0003491173,0.9024217,0.0002393923,0.0002483199,0.001642652,0.001681529,0.007170155,0.03731572,0.003240122,0.04551511,0.00006473538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9865275,0.002147026,0.006245058,0.0002245879,0.00001912897,0.00001007716,0.0005151426,0.00008270997,0.004228816],"genre_scores_gemma":[0.9913443,0.0006570084,0.005005135,0.00009711634,0.00001243499,0.00000723899,0.001206587,0.00003431602,0.001635809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006627575,"threshold_uncertainty_score":0.01317805,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976545708","doi":"10.1016/j.ympev.2008.11.026","title":"The scale of divergence: A phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus","year":2008,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of Waterloo","funders":"","keywords":"Allopatric speciation; Vicariance; Biology; Biological dispersal; Biogeography; Ecology; Genetic algorithm; Phylogeography; Evolutionary biology; Molecular clock; Genus; Phylogenetic tree; Population","authors":[{"name":"Sarah J. Adamowicz","is_ca":true},{"name":"Adam Petrusek","is_ca":false},{"name":"John K. Colbourne","is_ca":false},{"name":"Paul D. N. Hebert","is_ca":true},{"name":"Jonathan Witt","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005727325195897488,"gpt":0.2077892525707627,"spread":0.2020619273748652,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001647451,0.0001928307,0.0003127401,0.002128524,0.0008219143,0.001359537,0.0005456806,0.0003568789,0.001151946],"category_scores_gemma":[0.00193771,0.0001193948,0.0002466615,0.001723667,0.001585181,0.001175511,0.001155557,0.0006363337,0.00009967755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004186913,"about_ca_system_score_gemma":0.0002491356,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001238737,"about_ca_topic_score_gemma":0.002301149,"domain_scores_codex":[0.9998034,0.00007229152,0.00001375617,0.00003633854,0.00004978707,0.0000244596],"domain_scores_gemma":[0.9984269,0.0006452057,0.0003627828,0.0001357057,0.0002942167,0.0001352004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00170376,0.0001064472,0.6482368,0.0008034389,0.0008309458,0.00112056,0.01565952,0.006408266,0.1232593,0.02051338,0.0005917595,0.1807658],"study_design_scores_gemma":[0.00001487631,0.0001769559,0.9902512,0.00004159662,0.0001209104,0.0004856559,0.002297844,0.001737143,0.0005814547,0.002670863,0.001604917,0.00001656859],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912127,0.003161276,0.001784125,0.0001540426,0.000008280133,0.000008304522,0.00003988509,0.0000147386,0.003616726],"genre_scores_gemma":[0.9984529,0.0006534675,0.0006410679,0.00003092838,0.00001583945,0.000004845922,0.00003778447,0.000006123512,0.000157098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002128524,"threshold_uncertainty_score":0.008712709,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051992638","doi":"10.1016/s1055-7903(02)00333-0","title":"Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Ichthyology and Marine Biology","field":"Environmental Science","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Queen's University Belfast","keywords":"Biology; Monophyly; Phylogenetic tree; Sister group; Taxon; Cladistics; Phylogenetics; Zoology; Evolutionary biology; Clade; Ecology; Genetics; Gene","authors":[{"name":"Christophe J. Douady","is_ca":true},{"name":"Miné Dosay","is_ca":false},{"name":"Mahmood S. Shivji","is_ca":false},{"name":"Michael J. Stanhope","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008670472278534364,"gpt":0.2053269558040761,"spread":0.1966564835255418,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001987925,0.0005227766,0.0007428706,0.001176036,0.001228923,0.001852198,0.0009751702,0.001409011,0.002523421],"category_scores_gemma":[0.002242022,0.0003443481,0.0004086578,0.0007729288,0.002689259,0.001297844,0.001017717,0.001714915,0.0009134358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006357706,"about_ca_system_score_gemma":0.0008923864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001655785,"about_ca_topic_score_gemma":0.002139028,"domain_scores_codex":[0.9996108,0.00008290288,0.00004644996,0.0000957393,0.0000761962,0.00008787241],"domain_scores_gemma":[0.9970066,0.001099068,0.0004142667,0.0004390671,0.0006613756,0.0003795148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003783516,0.0002635407,0.219038,0.001145901,0.0007333873,0.005717684,0.007113527,0.004684719,0.5797178,0.0731438,0.0009329484,0.1037252],"study_design_scores_gemma":[0.0005446844,0.001828362,0.8617515,0.0008365702,0.001148341,0.0116805,0.008113545,0.00970661,0.03771786,0.02996089,0.03652484,0.0001863582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992058,0.001120839,0.002078629,0.0005740517,0.0001493703,0.00001231392,0.00007690654,0.00003199107,0.003897966],"genre_scores_gemma":[0.9956738,0.0009727365,0.001743048,0.0004429022,0.0001451581,0.000006906897,0.0001691645,0.00001223611,0.0008339806],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002523421,"threshold_uncertainty_score":0.01051325,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130887463","doi":"10.1016/j.ympev.2006.05.025","title":"Molecular phylogeny of the Arctoidea (Carnivora): Effect of missing data on supertree and supermatrix analyses of multiple gene data sets","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":169,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Supermatrix; Supertree; Biology; Mustelidae; Subfamily; Phylogenetic tree; Phylogenetics; Sister group; Evolutionary biology; Zoology; Clade; Genetics","authors":[{"name":"Tara L. Fulton","is_ca":true},{"name":"Curtis Strobeck","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03072841153015665,"gpt":0.2729384164515287,"spread":0.242210004921372,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02733662,0.0009807766,0.001657896,0.003480076,0.00397339,0.002793305,0.00278243,0.001807096,0.002780795],"category_scores_gemma":[0.0975994,0.001332388,0.002831212,0.003896756,0.003037481,0.00444062,0.001685629,0.00489468,0.0004766197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001537362,"about_ca_system_score_gemma":0.002220413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009973008,"about_ca_topic_score_gemma":0.01775187,"domain_scores_codex":[0.9777784,0.01501718,0.001273172,0.003265204,0.002004098,0.0006618698],"domain_scores_gemma":[0.7832757,0.1895203,0.006804055,0.01048086,0.006681204,0.003237897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.01427978,0.001457021,0.5064191,0.002952144,0.01174143,0.002695698,0.01180444,0.2013776,0.1101392,0.01525168,0.005994538,0.1158873],"study_design_scores_gemma":[0.0006433381,0.001255619,0.3349886,0.0004770167,0.005372507,0.002220674,0.002846279,0.6088905,0.01525271,0.02192641,0.005827169,0.0002991373],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780653,0.0006094234,0.01828265,0.0004623085,0.00003305294,0.00005275174,0.001671608,0.000289735,0.0005333018],"genre_scores_gemma":[0.9637023,0.0002420987,0.03130327,0.0001624111,0.00002362113,0.0000936346,0.003891426,0.000286591,0.0002946623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02733662,"threshold_uncertainty_score":0.1445715,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2133403229","doi":"10.1006/mpev.2001.1058","title":"Mitochondrial Phylogeography of Moose (Alces alces): Late Pleistocene Divergence and Population Expansion","year":2002,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Wildlife Ecology and Conservation","field":"Environmental Science","cited_by":167,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Purdue University; Arctic Institute of North America; National Science Foundation","keywords":"Phylogeography; Biology; Land bridge; Pleistocene; Population; Population bottleneck; Ecology; Interglacial; Demographic history; Coalescent theory; Genetic variation; Phylogenetic tree; Biological dispersal; Paleontology; Demography","authors":[{"name":"Kris J. Hundertmark","is_ca":false},{"name":"Gerald F. Shields","is_ca":false},{"name":"И. Г. Удина","is_ca":false},{"name":"R. Terry Bowyer","is_ca":false},{"name":"Alexei A. Danilkin","is_ca":false},{"name":"Charles C. Schwartz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00593831125479149,"gpt":0.181615394732783,"spread":0.1756770834779915,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004006854,0.0001531508,0.000187132,0.001182903,0.0005560762,0.0005090219,0.000236619,0.0003468075,0.001319806],"category_scores_gemma":[0.0008495087,0.0001477951,0.0001757077,0.0009844543,0.0004964908,0.0003581429,0.0004380322,0.0004394662,0.0001596022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004755865,"about_ca_system_score_gemma":0.0001985714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009276944,"about_ca_topic_score_gemma":0.0250037,"domain_scores_codex":[0.999895,0.0000281765,0.000006784541,0.00003844782,0.00001124595,0.00002044172],"domain_scores_gemma":[0.9995142,0.0001499933,0.0001526665,0.00003005869,0.00008122768,0.00007184038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001137029,0.00008137753,0.9167936,0.00005171132,0.0002690507,0.0002860531,0.006052268,0.001694072,0.05398808,0.001227848,0.0001303336,0.01828864],"study_design_scores_gemma":[0.00000746674,0.00002627428,0.9978887,0.000006870593,0.00002543389,0.0001655835,0.0003714252,0.0007930984,0.0003203416,0.0001122972,0.000277854,0.000004672183],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997784,0.00004197896,0.00003890611,0.000008453228,1.953719e-7,2.616864e-7,0.00002198635,9.722052e-7,0.0001086611],"genre_scores_gemma":[0.9996605,0.00005405285,0.00007868034,0.000006491735,0.000001130627,0.000001008198,0.00008915871,0.000002220872,0.0001068825],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009276944,"threshold_uncertainty_score":0.01844591,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976361312","doi":"10.1016/s1055-7903(03)00061-7","title":"RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Biotechnology and Biological Sciences Research Council; Canada Research Chairs; Research Councils UK","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Mitochondrial DNA; Genetics; Phylogenetics; Computational biology; Phylogenetic network; Clade; Multiple sequence alignment; Genome; Gene; Sequence alignment","authors":[{"name":"Cendrine Hudelot","is_ca":false},{"name":"Vivek Gowri-Shankar","is_ca":false},{"name":"Howsun Jow","is_ca":false},{"name":"Magnus Rattray","is_ca":false},{"name":"Paul G. Higgs","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009026677190647791,"gpt":0.2622081580998835,"spread":0.2531814809092357,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004808416,0.001487747,0.00124269,0.004931652,0.00287461,0.001544551,0.001867876,0.001562878,0.00321262],"category_scores_gemma":[0.01566955,0.001007573,0.001453529,0.006038792,0.001207677,0.00157867,0.001797633,0.003175492,0.002113095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008656486,"about_ca_system_score_gemma":0.001069613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001343798,"about_ca_topic_score_gemma":0.002087965,"domain_scores_codex":[0.9975024,0.00134534,0.0001158436,0.0004757188,0.0004755332,0.0000852337],"domain_scores_gemma":[0.9924732,0.005254668,0.0006042969,0.0006453999,0.0007287551,0.0002935207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000655029,0.0003049862,0.005954187,0.001361913,0.0007861659,0.0004107835,0.001081754,0.05902256,0.08698895,0.036636,0.004723987,0.8020737],"study_design_scores_gemma":[0.0001994146,0.0003394576,0.008369525,0.0003961948,0.0005501042,0.002070575,0.0003847984,0.8198993,0.04162246,0.09676886,0.02919828,0.0002010929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.008412315,0.001254112,0.9878252,0.00009554763,0.0000623728,0.00005228159,0.0001979646,0.00132938,0.0007708134],"genre_scores_gemma":[0.05481657,0.001051034,0.9421905,0.00009725428,0.00006481702,0.0002329498,0.0004839113,0.0005561201,0.0005069126],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004931652,"threshold_uncertainty_score":0.02542961,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011117385","doi":"10.1016/s1055-7903(03)00098-8","title":"RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Charadriiformes; Phylogenetic tree; Passerine; Clade; Evolutionary biology; Zoology; Sister group; Maximum parsimony; Phylogenetics; Genetics; Gene","authors":[{"name":"Tara Paton","is_ca":true},{"name":"Allan J. Baker","is_ca":true},{"name":"Jeff G. Groth","is_ca":false},{"name":"George F. Barrowclough","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01452646250208202,"gpt":0.2190361401008519,"spread":0.2045096775987699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003181421,0.0002467708,0.0003431961,0.001572699,0.0006758425,0.0007674153,0.00037749,0.00052784,0.001651086],"category_scores_gemma":[0.0006287136,0.0002548905,0.0001921542,0.0006981079,0.0004072981,0.0004910558,0.0003855051,0.0007693278,0.0007939477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003798914,"about_ca_system_score_gemma":0.0001641469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00129081,"about_ca_topic_score_gemma":0.00399346,"domain_scores_codex":[0.9998221,0.000027215,0.00000822564,0.00006770884,0.00002236409,0.00005244847],"domain_scores_gemma":[0.9991581,0.0002932144,0.0002355592,0.00008621909,0.00009593187,0.0001309636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00103573,0.00005753371,0.06685663,0.0001045552,0.00007154139,0.0002305445,0.0007985161,0.0005437571,0.9080549,0.0008689441,0.0001397184,0.02123759],"study_design_scores_gemma":[0.00006974514,0.0005765691,0.897186,0.00006716049,0.0002578968,0.002151505,0.001351869,0.00612794,0.07533938,0.001602851,0.01521976,0.00004933795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976541,0.0006477016,0.000612096,0.00002624304,0.000007586114,0.000002721179,0.0001204243,0.00002047165,0.0009086173],"genre_scores_gemma":[0.997348,0.0002101758,0.001229761,0.00004317262,0.00002223949,0.000003605696,0.0004672768,0.00001383918,0.0006618899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001651086,"threshold_uncertainty_score":0.005523384,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972289662","doi":"10.1016/j.ympev.2014.08.020","title":"Multilocus molecular phylogeny of the suckermouth armored catfishes (Siluriformes: Loricariidae) with a focus on subfamily Hypostominae","year":2014,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":156,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"The Scarborough Hospital; Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Clade; Loricariidae; Polyphyly; Subfamily; Paraphyly; Zoology; Genus; Evolutionary biology; Ecology; Phylogenetic tree; Catfish; Fishery","authors":[{"name":"Nathan K. Lujan","is_ca":true},{"name":"Jonathan W. Armbruster","is_ca":false},{"name":"Nathan R. Lovejoy","is_ca":true},{"name":"Hernán López‐Fernández","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004891529789824127,"gpt":0.1837988267858752,"spread":0.1789072969960511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001347614,0.0001668014,0.0001398535,0.0007926332,0.0002637732,0.0002656383,0.0001843657,0.0002214732,0.001664384],"category_scores_gemma":[0.0002640704,0.0001341924,0.0001616971,0.0004339942,0.0001874927,0.0002168246,0.0003268796,0.0002932906,0.0002940536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002463085,"about_ca_system_score_gemma":0.0001946028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002957093,"about_ca_topic_score_gemma":0.007932427,"domain_scores_codex":[0.9999309,0.000009405648,0.000004196129,0.0000284345,0.00001009397,0.00001698575],"domain_scores_gemma":[0.9997494,0.00004733902,0.00008789993,0.00001098889,0.00004393716,0.00006035342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006041605,0.00005617992,0.4284212,0.0001346394,0.000229522,0.0002787289,0.001979655,0.000915795,0.527505,0.0011222,0.0004345395,0.03831829],"study_design_scores_gemma":[0.00000657358,0.00006412843,0.9947413,0.00001323566,0.0000342803,0.0001988146,0.0003064252,0.0008959721,0.002166596,0.00009382142,0.00147285,0.0000060968],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985471,0.0002406433,0.0004262493,0.00003508908,0.000002092776,0.000002042696,0.0001491233,0.000009875315,0.0005876741],"genre_scores_gemma":[0.9981455,0.0001056382,0.0005588682,0.00002199753,0.000002527713,0.000004276304,0.0004373301,0.000005559874,0.0007185008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002957093,"threshold_uncertainty_score":0.00587976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2029326690","doi":"10.1016/j.ympev.2014.04.013","title":"Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae)","year":2014,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Medicinal Plants and Bioactive Compounds","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"China Scholarship Council","keywords":"Biology; Rhodiola; Crassulaceae; Reticulate evolution; Lineage (genetic); Phylogenetics; Plateau (mathematics); Phylogenetic tree; Clade; Evolutionary biology; Internal transcribed spacer; Biological dispersal; Botany; Ecology; Genetics","authors":[{"name":"Jianqiang Zhang","is_ca":false},{"name":"Shi‐Yong Meng","is_ca":false},{"name":"Geraldine A. Allen","is_ca":true},{"name":"Jun Wen","is_ca":false},{"name":"Guang‐Yuan Rao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006147644048688114,"gpt":0.2123724961932165,"spread":0.2062248521445284,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005313921,0.0002401016,0.0002141261,0.000965319,0.0007588146,0.0006690118,0.000363011,0.0003189964,0.001269692],"category_scores_gemma":[0.0003811462,0.0001425987,0.0002431436,0.000767916,0.0005504258,0.0002481222,0.0005831353,0.0003774605,0.0001792432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000693029,"about_ca_system_score_gemma":0.0004362105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01623599,"about_ca_topic_score_gemma":0.02744358,"domain_scores_codex":[0.9998066,0.00004779916,0.000009086197,0.00006694693,0.00002629991,0.00004331431],"domain_scores_gemma":[0.9997358,0.00004008926,0.00009400607,0.00002781959,0.00004996311,0.00005231308],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007716863,0.00006948138,0.6014708,0.000236913,0.0003691824,0.001198769,0.008392393,0.0008513825,0.3420326,0.002261572,0.0002542245,0.04209108],"study_design_scores_gemma":[0.00001675539,0.00006080869,0.9965891,0.00001092024,0.00003184296,0.0003403563,0.0005373905,0.0003083326,0.0005587972,0.00008576365,0.001452331,0.000007588104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985618,0.0004214583,0.0001678189,0.00003512706,0.000001903146,0.000004640376,0.00004211519,0.000005566677,0.0007595384],"genre_scores_gemma":[0.9991805,0.0001723629,0.0001688039,0.0000320517,0.000006082159,0.000004700799,0.0001299456,0.000004031334,0.0003015635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01623599,"threshold_uncertainty_score":0.03228301,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1970159000","doi":"10.1016/j.ympev.2010.10.004","title":"Molecular phylogenetics of porcini mushrooms (Boletus section Boletus)","year":2010,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":149,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"University of Oregon","keywords":"Biology; Monophyly; Molecular phylogenetics; Phylogenetic tree; Systematics; Agaricomycetes; Evolutionary biology; Internal transcribed spacer; Phylogenetics; Boletus; Zoology; Botany; Taxonomy (biology); Clade; Basidiomycota; Mushroom; Genetics; Gene","authors":[{"name":"Bryn T. M. Dentinger","is_ca":true},{"name":"Joseph F. Ammirati","is_ca":false},{"name":"Ernst E. Both","is_ca":false},{"name":"Dennis E. Desjardin","is_ca":false},{"name":"Roy E. Halling","is_ca":false},{"name":"Terry W. Henkel","is_ca":false},{"name":"Pierre‐Arthur Moreau","is_ca":false},{"name":"Eiji Nagasawa","is_ca":false},{"name":"Kasem Soytong","is_ca":false},{"name":"Andy F. S. Taylor","is_ca":false},{"name":"Roy Watling","is_ca":false},{"name":"Jean‐Marc Moncalvo","is_ca":true},{"name":"David J. McLaughlin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00361356252058846,"gpt":0.1798706666022988,"spread":0.1762571040817104,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001560133,0.0002406275,0.0002341823,0.001513185,0.0004641066,0.0007673044,0.0003100729,0.0003102855,0.001097218],"category_scores_gemma":[0.0002600696,0.0001902066,0.0002178508,0.001307924,0.0004554952,0.0004581595,0.0005835134,0.0005298685,0.000492752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005351008,"about_ca_system_score_gemma":0.0001840597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002136543,"about_ca_topic_score_gemma":0.002036724,"domain_scores_codex":[0.999918,0.000009448248,0.000005483036,0.00002745778,0.00001255423,0.00002710227],"domain_scores_gemma":[0.9997221,0.00006454967,0.00009909973,0.00002481606,0.00003781125,0.00005163781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001203854,0.00005799394,0.03383753,0.0002326639,0.00007667008,0.0004886659,0.0006783442,0.000626542,0.92213,0.0008503934,0.0001153081,0.03970211],"study_design_scores_gemma":[0.00003544494,0.0002471959,0.9501649,0.00006966214,0.0001571905,0.001227704,0.0006684836,0.001269014,0.03047868,0.0004348941,0.01522078,0.00002595882],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936659,0.001933874,0.001054442,0.00007004043,0.000008050937,0.00001248297,0.0003878227,0.00003556986,0.002831767],"genre_scores_gemma":[0.9953521,0.0009827187,0.0009994115,0.00005430002,0.00001018052,0.0000116924,0.001284088,0.00001692472,0.001288479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002136543,"threshold_uncertainty_score":0.004248202,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054052545","doi":"10.1016/j.ympev.2005.09.019","title":"Cytochrome b and Bayesian inference of whale phylogeny","year":2005,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine animal studies overview","field":"Environmental Science","cited_by":146,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Killam Trusts","keywords":"Biology; Phylogenetics; Monophyly; Clade; Phylogenetic tree; Evolutionary biology; Taxon; Mitochondrial DNA; Nuclear gene; Supermatrix; Cytochrome b; Zoology; Ecology; Genetics; Gene","authors":[{"name":"Laura J. May‐Collado","is_ca":false},{"name":"Ingi Agnarsson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006073255995362104,"gpt":0.2144823387786274,"spread":0.2084090827832653,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008186086,0.0005864045,0.001021094,0.002311724,0.00109831,0.001680726,0.001568169,0.001498354,0.002742448],"category_scores_gemma":[0.04080188,0.001051455,0.0007850658,0.002039852,0.001030477,0.002592508,0.001311068,0.002418738,0.0006804499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008474701,"about_ca_system_score_gemma":0.0008744727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01173432,"about_ca_topic_score_gemma":0.01325765,"domain_scores_codex":[0.9977261,0.001493028,0.0000971377,0.000401675,0.0002053705,0.00007653931],"domain_scores_gemma":[0.984457,0.01362861,0.0004814695,0.0007697254,0.0004409812,0.0002221137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00105293,0.0001384726,0.05582444,0.001015284,0.002195109,0.0005056484,0.001442539,0.3689176,0.01175087,0.1245288,0.008073446,0.4245549],"study_design_scores_gemma":[0.0001157381,0.00005907793,0.02922859,0.0001651595,0.0002736713,0.0003708359,0.0002060823,0.610664,0.001983023,0.348658,0.008178231,0.0000977399],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1744097,0.01385927,0.8023865,0.002136718,0.0001908722,0.00005200475,0.001141811,0.0005626688,0.005260452],"genre_scores_gemma":[0.786736,0.005493105,0.2019282,0.0005024132,0.0004828922,0.0001099668,0.001704492,0.0002882524,0.002754719],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01173432,"threshold_uncertainty_score":0.0432927,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010259384","doi":"10.1016/j.ympev.2006.01.003","title":"The evolutionary origins of nematodes within the order Strongylida are related to predilection sites within hosts","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Monophyly; Clade; 28S ribosomal RNA; Phylogenetic tree; Taxon; Lineage (genetic); Zoology; Evolutionary biology; Phylogenetics; Paleontology; Genetics; Gene","authors":[{"name":"Neil B. Chilton","is_ca":true},{"name":"Florence Huby‐Chilton","is_ca":false},{"name":"Robin B. Gasser","is_ca":false},{"name":"Ian Beveridge","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005765609369112123,"gpt":0.1924806264819206,"spread":0.1867150171128085,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002419734,0.0002832337,0.000255217,0.001287207,0.0007170328,0.0006323143,0.0002828807,0.0004785332,0.001263707],"category_scores_gemma":[0.0004688279,0.0003428691,0.0001508729,0.0006804613,0.0005266663,0.0006769613,0.0005385813,0.0005451764,0.0003169478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000374502,"about_ca_system_score_gemma":0.0002607109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001491616,"about_ca_topic_score_gemma":0.004682831,"domain_scores_codex":[0.9998369,0.00003003288,0.00001133354,0.00005036738,0.00002788584,0.00004346496],"domain_scores_gemma":[0.9993097,0.0001571631,0.0002746386,0.00004222583,0.0001100348,0.0001062555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005294351,0.0000942932,0.360622,0.0001802011,0.00007647764,0.0004362885,0.001886318,0.0006535181,0.6083634,0.001062287,0.0000923839,0.0260033],"study_design_scores_gemma":[0.0000110067,0.0001401779,0.989754,0.00002329249,0.00003142808,0.0006346154,0.0007057094,0.0006271625,0.006608006,0.0002497372,0.001197047,0.00001795702],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988124,0.0002271382,0.000337213,0.0000171491,0.000001154824,0.000004824565,0.00004332194,0.000004777858,0.0005520018],"genre_scores_gemma":[0.9986482,0.0002330596,0.0005866417,0.00001749204,0.000003539147,0.00000571181,0.0001780357,0.000006062015,0.0003211781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001491616,"threshold_uncertainty_score":0.004227519,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2301907526","doi":"10.1016/j.ympev.2016.02.021","title":"Biogeography and diversification of Brassicales: A 103 million year tale","year":2016,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":138,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Brassicaceae; Disjunct; Vicariance; Biogeography; Biological dispersal; Lineage (genetic); Taxon; Ecology; Disjunct distribution; Evolutionary biology; Phylogenetics; Phylogeography; Phylogenetic tree; Population; Genetics","authors":[{"name":"Warren Cardinal‐McTeague","is_ca":true},{"name":"Kenneth J. Sytsma","is_ca":false},{"name":"Jocelyn C. Hall","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007305871069575504,"gpt":0.1612199005757357,"spread":0.1539140295061602,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003000294,0.0007597064,0.00108317,0.002621084,0.00122532,0.003607423,0.001067583,0.00215313,0.004297335],"category_scores_gemma":[0.004266314,0.0006544751,0.000675491,0.001801061,0.00297751,0.005873727,0.003179925,0.002509021,0.0008674556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001038524,"about_ca_system_score_gemma":0.0007433865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002075862,"about_ca_topic_score_gemma":0.002743202,"domain_scores_codex":[0.9995847,0.00007433887,0.0000369616,0.0001382446,0.00008958672,0.00007610997],"domain_scores_gemma":[0.9979743,0.0008238266,0.0002417989,0.0002762544,0.0002588516,0.0004249907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001228573,0.0002118136,0.08710785,0.002853067,0.002917359,0.002177797,0.01086259,0.02031463,0.03362859,0.07350462,0.04301999,0.7221732],"study_design_scores_gemma":[0.00005505709,0.0005529797,0.3890187,0.001865785,0.001002805,0.001989673,0.006430973,0.008258202,0.002461157,0.1667111,0.4212829,0.0003707764],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5444435,0.3126461,0.03848065,0.07317922,0.003797319,0.00009775068,0.001786509,0.001250688,0.02431827],"genre_scores_gemma":[0.8409009,0.1136318,0.01239189,0.01545137,0.003508573,0.0001166069,0.00137336,0.0003248,0.01230066],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004297335,"threshold_uncertainty_score":0.01586723,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113344888","doi":"10.1016/j.ympev.2011.11.030","title":"Opsin gene duplication and divergence in ray-finned fish","year":2011,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Gene duplication; Biology; Opsin; Evolutionary biology; Gene; Tandem exon duplication; Gene family; Gene conversion; Phylogenetic tree; Genetics; Genome; Most recent common ancestor; Phylogenetics; Rhodopsin","authors":[{"name":"Diana J. Rennison","is_ca":false},{"name":"Gregory L. Owens","is_ca":true},{"name":"John S. Taylor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008467633145257721,"gpt":0.1989166288811825,"spread":0.1904489957359248,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000210398,0.0001307186,0.0003774741,0.001120837,0.0003586687,0.0004248004,0.0003629857,0.0003508978,0.0009660177],"category_scores_gemma":[0.0004030055,0.0002973761,0.0002706244,0.0006344546,0.0006073345,0.0003895719,0.0006024537,0.0004179627,0.0002605516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007221341,"about_ca_system_score_gemma":0.0003144284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002411962,"about_ca_topic_score_gemma":0.004871504,"domain_scores_codex":[0.999867,0.00001171122,0.00001193945,0.00004424008,0.00002926922,0.00003576925],"domain_scores_gemma":[0.9997079,0.00008087236,0.00007581029,0.00003676092,0.00003978747,0.0000588428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007666278,0.000022243,0.05775047,0.00004472142,0.00005189943,0.0006550777,0.000362608,0.0004383813,0.9299987,0.0006064228,0.0000249915,0.009277764],"study_design_scores_gemma":[0.00002834364,0.00015922,0.9661036,0.000008136038,0.00004036285,0.00166056,0.0003328419,0.0006934055,0.02962683,0.0002808328,0.001051321,0.00001457452],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994779,0.00009428418,0.0000983909,0.000006795839,7.110518e-7,9.55334e-7,0.00002880028,0.000002133069,0.0002900116],"genre_scores_gemma":[0.9983591,0.000122653,0.0002770243,0.00002014085,0.000002668307,0.000004266871,0.0001326134,0.000006087334,0.001075466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002411962,"threshold_uncertainty_score":0.005239546,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974807302","doi":"10.1016/j.ympev.2013.03.016","title":"Reconstructing the phylogeny of aphids (Hemiptera: Aphididae) using DNA of the obligate symbiont Buchnera aphidicola","year":2013,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":128,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Buchnera; Biology; Aphididae; Phylogenetics; Aphid; Phylogenetic tree; Evolutionary biology; Hemiptera; Cladogenesis; Acyrthosiphon pisum; Clade; Zoology; Genetics; Botany; Gene; Genome; PEST analysis","authors":[{"name":"Eva Nováková","is_ca":false},{"name":"Václav Hypša","is_ca":false},{"name":"Joanne Klein","is_ca":false},{"name":"Robert G. Foottit","is_ca":true},{"name":"Carol D. von Dohlen","is_ca":false},{"name":"Nancy A. Moran","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00810005772421196,"gpt":0.1738271429170664,"spread":0.1657270851928545,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002341552,0.0002314654,0.0001694434,0.0009829768,0.0004936476,0.0006148879,0.0002127001,0.000491343,0.000648951],"category_scores_gemma":[0.0007726037,0.0003028593,0.0002142466,0.0005983975,0.0002491665,0.0003951007,0.0003117218,0.0007710143,0.0002263597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002536928,"about_ca_system_score_gemma":0.0003134222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001985066,"about_ca_topic_score_gemma":0.005895835,"domain_scores_codex":[0.9999168,0.00001771156,0.000004430825,0.00003419525,0.00001220141,0.00001476467],"domain_scores_gemma":[0.9996511,0.0001712964,0.00005981086,0.00002822437,0.00003311008,0.00005640831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000430274,0.00006525186,0.1380642,0.0001593647,0.0001395643,0.0002202515,0.00130199,0.00284577,0.8199607,0.001078991,0.0001424755,0.0355911],"study_design_scores_gemma":[0.00007766821,0.000357653,0.9280143,0.0001294696,0.0002478226,0.001238336,0.001577413,0.01597742,0.04005883,0.001650862,0.01063231,0.00003794401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997491,0.0002923608,0.001450241,0.00003168627,0.000004257014,0.000005819719,0.0001680562,0.00001100335,0.0005455899],"genre_scores_gemma":[0.9924809,0.0004425496,0.005396246,0.00003760865,0.000006992246,0.000007816209,0.001063138,0.00001415103,0.0005506427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001985066,"threshold_uncertainty_score":0.00394702,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964668335","doi":"10.1016/j.ympev.2005.04.002","title":"Diversity of the protein disulfide isomerase family: Identification of breast tumor induced Hag2 and Hag3 as novel members of the protein family","year":2005,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Endoplasmic reticulum; Unfolded protein response; Protein disulfide-isomerase; Cell; Pathogenesis; Inflammatory bowel disease; Disease; Cell biology; Cancer research; Immunology; Genetics; Pathology","authors":[{"name":"Staffan Persson","is_ca":false},{"name":"Magnus Rosenquist","is_ca":false},{"name":"Barbara Knoblach","is_ca":true},{"name":"Roya Khosravi‐Far","is_ca":false},{"name":"Marianne Sommarin","is_ca":false},{"name":"Marek Michalak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005506805341934114,"gpt":0.2011983583724703,"spread":0.1956915530305362,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001928147,0.0001709248,0.0002243612,0.0004994149,0.0002155497,0.0003782104,0.000186091,0.0002107936,0.0006233563],"category_scores_gemma":[0.0002452635,0.00009849308,0.0002484941,0.0004264161,0.0001516358,0.000267701,0.0002174136,0.0004103479,0.0002756731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002408696,"about_ca_system_score_gemma":0.0001719804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003982757,"about_ca_topic_score_gemma":0.0003890653,"domain_scores_codex":[0.9999276,0.000008888107,0.000005537858,0.00001966246,0.00002109558,0.00001721177],"domain_scores_gemma":[0.999804,0.00003109275,0.00003979995,0.00003082887,0.00004007585,0.00005424011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003064558,0.0000296705,0.006376436,0.00003107278,0.00002374931,0.000408183,0.00009021562,0.0001443702,0.9864276,0.0002926531,0.0001136296,0.005755962],"study_design_scores_gemma":[0.00006271325,0.0007052117,0.4419331,0.00003647414,0.0002130243,0.02486505,0.0008497367,0.008390445,0.4847908,0.002638872,0.03545481,0.00005970767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966772,0.0008295964,0.001453135,0.00008499248,0.000009996589,0.000005543765,0.0002290319,0.00003199253,0.0006785112],"genre_scores_gemma":[0.9926767,0.0008569742,0.003069034,0.00008733795,0.00001898119,0.00001015189,0.001761056,0.00001754793,0.001502139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006233563,"threshold_uncertainty_score":0.002085268,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075657816","doi":"10.1016/j.ympev.2012.02.005","title":"Diversification rates and chromosome evolution in the most diverse angiosperm genus of the temperate zone (Carex, Cyperaceae)","year":2012,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Botany, Ecology, and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":123,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Carex; Cyperaceae; Biology; Species richness; Ecology; Temperate climate; Evolutionary biology; Botany; Poaceae","authors":[{"name":"Marcial Escudero","is_ca":false},{"name":"Andrew L. Hipp","is_ca":false},{"name":"Marcia J. Waterway","is_ca":true},{"name":"Luís Valente","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0158282027482472,"gpt":0.2025057169583089,"spread":0.1866775142100617,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003260622,0.0002275171,0.0002344524,0.00278882,0.0005179834,0.000651542,0.0002918596,0.0003576725,0.001932241],"category_scores_gemma":[0.0006645375,0.0001246635,0.000217522,0.001323625,0.0004034781,0.0004020699,0.0003811627,0.0002798426,0.0002553142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004796956,"about_ca_system_score_gemma":0.0001186156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001936033,"about_ca_topic_score_gemma":0.004823345,"domain_scores_codex":[0.9998633,0.00002983086,0.000007761899,0.00005906708,0.00001579241,0.00002437544],"domain_scores_gemma":[0.9995463,0.000171829,0.0001201961,0.00003661601,0.00005950591,0.00006548192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006702286,0.00002571648,0.8313352,0.00009480572,0.0002785531,0.0002293398,0.00182672,0.0007332205,0.1397966,0.0006314492,0.0001465769,0.02423164],"study_design_scores_gemma":[0.000004146839,0.00001694121,0.998571,0.000003436664,0.00002095317,0.0001651373,0.0001195577,0.0002900465,0.0005166,0.00005655139,0.0002323831,0.000003195899],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994764,0.0002033098,0.00004538784,0.000005726073,3.725542e-7,8.751847e-7,0.00007597467,0.000002322487,0.0001896788],"genre_scores_gemma":[0.9993085,0.000129686,0.0001006222,0.000008102742,0.000002541733,0.000002154002,0.0002507151,0.000003753524,0.0001940279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00278882,"threshold_uncertainty_score":0.006463945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989211906","doi":"10.1006/mpev.1999.0719","title":"Phylogenetic Analysis of Molluscan Mitochondrial LSU rDNA Sequences and Secondary Structures","year":2000,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":122,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"National Institute of General Medical Sciences; University of Alabama; National Institutes of Health; National Science Foundation","keywords":"Biology; Phylogenetic tree; Monophyly; Evolutionary biology; Ribosomal RNA; Phylogenetics; Phylum; Zoology; Genetics; Gene; Clade","authors":[{"name":"Charles Lydeard","is_ca":false},{"name":"Wallace E. Holznagel","is_ca":false},{"name":"Murray N. Schnare","is_ca":true},{"name":"Robin R. Gutell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004732519974942495,"gpt":0.2489355423181642,"spread":0.2442030223432217,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002426339,0.0002986658,0.0003609393,0.001396105,0.001211501,0.0005369738,0.000239183,0.0003191945,0.001459046],"category_scores_gemma":[0.0005829906,0.00014759,0.0003535865,0.00146009,0.0003253412,0.0002200778,0.0002610178,0.0006485311,0.0004641776],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008323424,"about_ca_system_score_gemma":0.0006435626,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004554034,"about_ca_topic_score_gemma":0.009325727,"domain_scores_codex":[0.999872,0.00001939816,0.000007005468,0.00004234236,0.00002393968,0.00003526643],"domain_scores_gemma":[0.999546,0.000115888,0.0001019757,0.00003109137,0.0001114323,0.00009360502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001966752,0.0001760765,0.04772384,0.000207397,0.0001308274,0.0003362677,0.001058349,0.001808032,0.9066368,0.001285871,0.0005680427,0.03810181],"study_design_scores_gemma":[0.0000792852,0.0009082126,0.8937984,0.00009735826,0.0003896026,0.0009306248,0.0009681878,0.0154168,0.06866832,0.001549643,0.01713302,0.0000604894],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957229,0.0004529496,0.00128278,0.0000689049,0.000006294319,0.00002011472,0.0008108952,0.00004282117,0.001592348],"genre_scores_gemma":[0.9920774,0.0002743788,0.003286001,0.00006068571,0.00001504253,0.0000324573,0.003235644,0.0000306745,0.0009877478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004554034,"threshold_uncertainty_score":0.009055078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064637429","doi":"10.1016/j.ympev.2008.09.027","title":"Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding","year":2008,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Bamfield Marine Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia; University of Hong Kong; Croucher Foundation; Microsoft","keywords":"Biology; Phylogenetic tree; Phylogenetics; Evolutionary biology; Protist; Gene; Ribosomal RNA; Sister group; Botany; Clade; Genetics","authors":[{"name":"Clement K. M. Tsui","is_ca":true},{"name":"Wyth L. Marshall","is_ca":true},{"name":"Rinka Yokoyama","is_ca":false},{"name":"Daiske Honda","is_ca":false},{"name":"J. Casey Lippmeier","is_ca":false},{"name":"Kelly D. Craven","is_ca":false},{"name":"Paul D. Peterson","is_ca":false},{"name":"Mary L. Berbee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01312956155277747,"gpt":0.2228049293052061,"spread":0.2096753677524286,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003968083,0.0002335922,0.0003133923,0.0007516924,0.0009325715,0.001017122,0.0004096762,0.0005948696,0.001664508],"category_scores_gemma":[0.0006588547,0.00016817,0.0001874077,0.0008515741,0.0006648806,0.0008648208,0.0008408268,0.0009315277,0.0002802724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006093868,"about_ca_system_score_gemma":0.0004689099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00119587,"about_ca_topic_score_gemma":0.001201832,"domain_scores_codex":[0.9998417,0.00002668372,0.00001211895,0.00005540776,0.00002432828,0.00003975328],"domain_scores_gemma":[0.9995089,0.0001016306,0.0001523424,0.00007798135,0.00007540997,0.00008365396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000884745,0.00004818863,0.06412416,0.0001794868,0.00006509123,0.0007274105,0.0008073319,0.002672514,0.8761475,0.004628577,0.0001366841,0.04957828],"study_design_scores_gemma":[0.00005756297,0.0003111359,0.9285974,0.0000847434,0.00009473385,0.002733602,0.001332213,0.006983591,0.0469397,0.003978195,0.008834112,0.00005294359],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957964,0.0004895123,0.001669533,0.0002166506,0.000004550181,0.000002896356,0.00008610603,0.00002970145,0.001704657],"genre_scores_gemma":[0.9979379,0.000360227,0.0009654511,0.00004916649,0.000005963082,0.000003941657,0.0001276057,0.00001253863,0.0005371877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001664508,"threshold_uncertainty_score":0.005568385,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037200781","doi":"10.1016/s1055-7903(03)00240-9","title":"Molecular resolution of the family Dreissenidae (Mollusca: Bivalvia) with emphasis on Ponto-Caspian species, including first report of Mytilopsis leucophaeata in the Black Sea basin","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Aquatic Invertebrate Ecology and Behavior","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Windsor","funders":"","keywords":"Biology; Dreissena; Cytochrome c oxidase subunit I; Ecology; Zoology; Intraspecific competition; Molecular phylogenetics; Bivalvia; Phylogenetic tree; Mollusca; Gene","authors":[{"name":"Thomas W. Therriault","is_ca":true},{"name":"Margaret F. Docker","is_ca":true},{"name":"М. И. Орлова","is_ca":false},{"name":"Daniel D. Heath","is_ca":true},{"name":"Hugh J. MacIsaac","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01529449394626439,"gpt":0.2145208327958812,"spread":0.1992263388496168,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002435299,0.0003206815,0.0002213453,0.0005884918,0.000630817,0.0004258408,0.000327411,0.0004236351,0.001509428],"category_scores_gemma":[0.0004174646,0.0001705055,0.0001796549,0.0002357509,0.0003135692,0.0003888686,0.0006549035,0.0008068448,0.0004231728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004598143,"about_ca_system_score_gemma":0.0002683045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003361902,"about_ca_topic_score_gemma":0.01427908,"domain_scores_codex":[0.9998912,0.000009909197,0.000006209545,0.00004605175,0.00002134966,0.00002529997],"domain_scores_gemma":[0.9997217,0.00005397734,0.00005033704,0.00003826691,0.0000684346,0.00006727436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001560428,0.00002824546,0.01462967,0.0001245511,0.00005156624,0.0002230875,0.0004519937,0.0005948271,0.9428192,0.001304032,0.000789978,0.0388267],"study_design_scores_gemma":[0.00006348045,0.0002566785,0.7453408,0.0001827424,0.0001723423,0.003218671,0.0008045693,0.00443392,0.1514915,0.002384125,0.09161035,0.00004082354],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9835035,0.00389639,0.006599344,0.0006811629,0.00008314192,0.0000200979,0.0008047869,0.00009955284,0.004312079],"genre_scores_gemma":[0.9761499,0.002237838,0.01248535,0.0002703278,0.00005566512,0.0000313243,0.003170989,0.00005284819,0.00554585],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003361902,"threshold_uncertainty_score":0.006684661,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061494051","doi":"10.1016/j.ympev.2004.12.010","title":"A phylogenetic framework for the terns (Sternini) inferred from mtDNA sequences: implications for taxonomy and plumage evolution","year":2005,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum","funders":"","keywords":"Plumage; Biology; Phylogenetics; Zoology; Subspecies; Phylogenetic tree; Evolutionary biology; Clade; Character evolution; Feather; Taxonomy (biology); Genetics","authors":[{"name":"Eli S. Bridge","is_ca":false},{"name":"Andrew W. Jones","is_ca":false},{"name":"Allan J. Baker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02333963465660189,"gpt":0.2560729227508444,"spread":0.2327332880942425,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002288858,0.0007603079,0.001064552,0.002194973,0.00305405,0.003108819,0.002091467,0.001592504,0.002911049],"category_scores_gemma":[0.003259937,0.0004121601,0.0007858883,0.001596532,0.003771982,0.003284016,0.001347128,0.002488289,0.001175915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001681388,"about_ca_system_score_gemma":0.001924473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005281239,"about_ca_topic_score_gemma":0.007683535,"domain_scores_codex":[0.999438,0.0002172698,0.00004468948,0.0001951642,0.00004449768,0.00006049878],"domain_scores_gemma":[0.9989115,0.0002662712,0.0002253042,0.0001070505,0.0002406647,0.0002491941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","study_design_scores_codex":[0.0008221989,0.0003749675,0.05438062,0.00238116,0.00064942,0.002053635,0.01469103,0.04739209,0.1185059,0.4719075,0.006313729,0.2805279],"study_design_scores_gemma":[0.000183253,0.001118432,0.1203407,0.001053198,0.000619086,0.002460043,0.00691892,0.1320949,0.003552879,0.6599436,0.07131726,0.0003977013],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2391998,0.009556673,0.7200594,0.006575964,0.0004849956,0.000306764,0.0008913157,0.001060119,0.02186495],"genre_scores_gemma":[0.7899773,0.003205358,0.2018014,0.0008043168,0.0003158697,0.0001990678,0.001218834,0.000225547,0.002252332],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005281239,"threshold_uncertainty_score":0.0121994,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2793219560","doi":"10.1016/j.ympev.2018.02.020","title":"Large-scale phylogenetic analyses provide insights into unrecognized diversity and historical biogeography of Asian leaf-litter frogs, genus Leptolalax (Anura: Megophryidae)","year":2018,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":114,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Thailand Research Fund; National Natural Science Foundation of China; Archer Daniels Midland; Japan Society for the Promotion of Science; Russian Foundation for Basic Research; Russian Science Foundation; Chinese Academy of Sciences; John D. and Catherine T. MacArthur Foundation; Youth Innovation Promotion Association of the Chinese Academy of Sciences; National Science Foundation","keywords":"Biology; Biogeography; Genus; Phylogenetic tree; Ecology; Evolutionary biology; Phylogenetic diversity; Scale (ratio); Phylogenetics; Plant litter; Zoology; Ecosystem; Cartography","authors":[{"name":"Jinmin Chen","is_ca":false},{"name":"Nikolay A. Poyarkov","is_ca":false},{"name":"Chatmongkon Suwannapoom","is_ca":false},{"name":"Amy Lathrop","is_ca":true},{"name":"Yun‐He Wu","is_ca":false},{"name":"Weiwei Zhou","is_ca":false},{"name":"Zhiyong Yuan","is_ca":false},{"name":"Jie‐Qiong Jin","is_ca":false},{"name":"Hong-Man Chen","is_ca":false},{"name":"Hequn Liu","is_ca":false},{"name":"Truong Quang Nguyen","is_ca":false},{"name":"Sang Ngoc Nguyen","is_ca":false},{"name":"Tang Van Duong","is_ca":false},{"name":"Koshiro Eto","is_ca":false},{"name":"Kanto Nishikawa","is_ca":false},{"name":"Masafumi Matsui","is_ca":false},{"name":"Nikolai L. Orlov","is_ca":false},{"name":"Bryan L. Stuart","is_ca":false},{"name":"Rafe M. Brown","is_ca":false},{"name":"Jodi J. L. Rowley","is_ca":false},{"name":"Robert W. Murphy","is_ca":false},{"name":"Ying-Yong Wang","is_ca":false},{"name":"Jing Che","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01226621098590355,"gpt":0.220779906914311,"spread":0.2085136959284075,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006024365,0.0003042853,0.0003357114,0.002236043,0.001025856,0.0007866226,0.000317908,0.0003295367,0.002181374],"category_scores_gemma":[0.0007564476,0.0001987627,0.0003414563,0.002594384,0.0007278548,0.0008338765,0.0007942152,0.0005467552,0.0004770692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003325694,"about_ca_system_score_gemma":0.0002401606,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001566619,"about_ca_topic_score_gemma":0.005664201,"domain_scores_codex":[0.9997837,0.00004441627,0.00001793751,0.00009449371,0.00002382279,0.00003557214],"domain_scores_gemma":[0.999266,0.0001888987,0.0002855777,0.00007838937,0.00007882515,0.0001023761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003766032,0.0001171377,0.735241,0.0003147334,0.0004237587,0.0004966439,0.005929103,0.001182031,0.2021168,0.002778854,0.0003297145,0.05069364],"study_design_scores_gemma":[0.000007059933,0.00005383983,0.9931813,0.00003304511,0.0001083034,0.0003900223,0.001301232,0.001093924,0.0009397508,0.0006247582,0.0022533,0.00001345846],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962549,0.0006146672,0.001436808,0.00004053485,0.000005146994,0.000004347252,0.0003373426,0.00001791075,0.001288336],"genre_scores_gemma":[0.9979408,0.0002634467,0.0009870337,0.00003628184,0.00001057147,0.000005451411,0.0005487784,0.00001062172,0.0001968867],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002236043,"threshold_uncertainty_score":0.007297456,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155223090","doi":"10.1016/j.ympev.2004.06.007","title":"Phylogenetic relationships of cyphelloid homobasidiomycetes","year":2004,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"National Science Foundation","keywords":"Biology; Phylogenetic tree; Polyphyly; Maximum parsimony; Clade; Ribosomal DNA; Internal transcribed spacer; Taxon; Phylogenetics; Botany; Evolutionary biology; Genetics; Gene","authors":[{"name":"Philomena Bodensteiner","is_ca":false},{"name":"Manfred Binder","is_ca":false},{"name":"Jean‐Marc Moncalvo","is_ca":true},{"name":"Reinhard Agerer","is_ca":false},{"name":"David S. Hibbett","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009174244163359687,"gpt":0.1808921077689294,"spread":0.1717178636055697,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001917861,0.0001566123,0.0002056757,0.001216038,0.0006922398,0.0008313602,0.0001510997,0.0003009014,0.001647176],"category_scores_gemma":[0.0004153463,0.0001442833,0.0001329406,0.001084774,0.0003109853,0.0003359466,0.0003345885,0.0003570768,0.0004685705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003014027,"about_ca_system_score_gemma":0.0002672465,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001494418,"about_ca_topic_score_gemma":0.002213997,"domain_scores_codex":[0.9998915,0.00001846212,0.000007952643,0.00003340909,0.00001566888,0.0000329682],"domain_scores_gemma":[0.9996469,0.00009140151,0.00007653112,0.00004027407,0.00005937415,0.00008556517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001812119,0.00008920677,0.2243334,0.000208561,0.0001074498,0.0006125104,0.002496176,0.001718031,0.6498597,0.004225849,0.0004336979,0.1141035],"study_design_scores_gemma":[0.00003442465,0.0001459397,0.9743803,0.00004263878,0.00005503258,0.001076116,0.0009080896,0.002350351,0.01148364,0.0009412918,0.008562619,0.00001961663],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964724,0.0007025518,0.0006187856,0.00003515436,0.000004433842,0.000005957108,0.0001393023,0.00001710559,0.002004445],"genre_scores_gemma":[0.9969224,0.0005228643,0.000957442,0.00002235604,0.000006554504,0.000006012812,0.0004392023,0.00000642687,0.001116786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001647176,"threshold_uncertainty_score":0.00551033,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050185232","doi":"10.1016/j.ympev.2006.06.022","title":"Phylogeny, historical biogeography, and taxonomic ranking of Parnassiinae (Lepidoptera, Papilionidae) based on morphology and seven genes","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Monophyly; Phylogenetic tree; Evolutionary biology; Subfamily; Vicariance; Biological dispersal; Biogeography; Erebidae; Molecular phylogenetics; Zoology; Phylogenetics; Clade; Ecology; Genetics; Gene; Genus; Population; Demography","authors":[{"name":"Vazrick Nazari","is_ca":true},{"name":"Evgueni V. Zakharov","is_ca":true},{"name":"Felix A. H. Sperling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005856549437129172,"gpt":0.1892180917659851,"spread":0.183361542328856,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003427652,0.0002017463,0.0001750308,0.001748267,0.000526522,0.0004142442,0.0003000897,0.0001659286,0.001161802],"category_scores_gemma":[0.0005115501,0.0001527013,0.0001521675,0.001016017,0.00063451,0.0006002102,0.0003744808,0.0003215864,0.0003254544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003282827,"about_ca_system_score_gemma":0.000200812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002509097,"about_ca_topic_score_gemma":0.006707395,"domain_scores_codex":[0.999816,0.00003935727,0.00001227483,0.00008539978,0.00001945029,0.0000275514],"domain_scores_gemma":[0.9994862,0.00009213713,0.0001589443,0.00004224517,0.0001344772,0.00008592582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000579479,0.00006221763,0.7298035,0.0002579634,0.0002068404,0.0004591295,0.005067453,0.0007334536,0.141885,0.001993638,0.0003573865,0.1185939],"study_design_scores_gemma":[0.00000668419,0.00007988939,0.9945868,0.00001209252,0.00005060578,0.0006918711,0.0004980278,0.000719342,0.0007842668,0.000309355,0.002253395,0.00000760352],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959683,0.001218329,0.0005909902,0.00003642817,0.000003351958,0.000006158596,0.0001219965,0.00001402722,0.00204051],"genre_scores_gemma":[0.998326,0.0004305684,0.000650219,0.0000138908,0.000004990848,0.000005549082,0.0002322178,0.00000587972,0.0003305706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002509097,"threshold_uncertainty_score":0.004989028,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2519425068","doi":"10.1016/j.ympev.2016.09.004","title":"A novel multilocus phylogenetic estimation reveals unrecognized diversity in Asian horned toads, genus Megophrys sensu lato (Anura: Megophryidae)","year":2016,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum","funders":"Youth Innovation Promotion Association; John D. and Catherine T. MacArthur Foundation; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Rome Foundation; Youth Innovation Promotion Association of the Chinese Academy of Sciences; Institute of Southeast Asian Studies; Russian Foundation for Basic Research; Robert Schalkenbach Foundation; Russian Science Foundation; Chinese Academy of Sciences; National Science Foundation","keywords":"Paraphyly; Biology; Sensu; Zoology; Genus; Clade; Ecology; Evolutionary biology; Phylogenetic tree","authors":[{"name":"Jinmin Chen","is_ca":false},{"name":"Weiwei Zhou","is_ca":false},{"name":"Nikolay A. Poyarkov","is_ca":false},{"name":"Bryan L. Stuart","is_ca":false},{"name":"Rafe M. Brown","is_ca":false},{"name":"Amy Lathrop","is_ca":true},{"name":"Ying-Yong Wang","is_ca":false},{"name":"Zhiyong Yuan","is_ca":false},{"name":"Ke Jiang","is_ca":false},{"name":"Mian Hou","is_ca":false},{"name":"Hong-Man Chen","is_ca":false},{"name":"Chatmongkon Suwannapoom","is_ca":false},{"name":"Sang Ngoc Nguyen","is_ca":false},{"name":"Tang Van Duong","is_ca":false},{"name":"Theodore J. Papenfuss","is_ca":false},{"name":"Robert W. Murphy","is_ca":true},{"name":"Ya‐Ping Zhang","is_ca":false},{"name":"Jing Che","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0101668494950193,"gpt":0.2086145207287456,"spread":0.1984476712337263,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002585065,0.0002651947,0.0002390392,0.001739393,0.0006992855,0.0006625901,0.0003643526,0.000339902,0.001119241],"category_scores_gemma":[0.0005407675,0.0001914468,0.0002997172,0.001160183,0.0004748009,0.0004313292,0.000613595,0.0003769051,0.0003010408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000224447,"about_ca_system_score_gemma":0.000171852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002306941,"about_ca_topic_score_gemma":0.00595627,"domain_scores_codex":[0.9997906,0.00002849805,0.00001398064,0.00009690745,0.00002949445,0.0000405676],"domain_scores_gemma":[0.9995651,0.00008964221,0.0001757337,0.00003559581,0.00005993801,0.00007394661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003336565,0.0000605776,0.8324967,0.0000702354,0.0001580598,0.0002941094,0.00152105,0.0003300743,0.1452055,0.0002931885,0.0001959415,0.01904098],"study_design_scores_gemma":[0.000007509168,0.00006603907,0.993395,0.00001291096,0.00009207609,0.0006471135,0.0007619285,0.001691842,0.002314865,0.0001252302,0.0008739278,0.00001150989],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983591,0.0001092608,0.0008540394,0.00001174752,0.000003828389,0.000002956756,0.0001434585,0.00001336611,0.0005022825],"genre_scores_gemma":[0.9989523,0.0000225547,0.0007169462,0.00001311809,0.000002994326,0.000003337142,0.0002003106,0.00000491317,0.00008344957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002306941,"threshold_uncertainty_score":0.004586995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999185155","doi":"10.1016/s1055-7903(03)00140-4","title":"Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine Biology and Ecology Research","field":"Earth and Planetary Sciences","cited_by":112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Phylogenetics; Phylogenetic relationship; Genetics; Gene","authors":[{"name":"Ed Remigio","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04550969052646441,"gpt":0.2500974165923709,"spread":0.2045877260659065,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01023764,0.0006739714,0.0003776599,0.001543014,0.0007910708,0.000876212,0.001013366,0.001225406,0.001641545],"category_scores_gemma":[0.04965744,0.0004312379,0.0006870771,0.00187279,0.001164457,0.00143415,0.0008398748,0.001229993,0.0005634444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003992475,"about_ca_system_score_gemma":0.0005797554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002369731,"about_ca_topic_score_gemma":0.003160847,"domain_scores_codex":[0.9937223,0.0043112,0.0003855163,0.0008359345,0.000487974,0.0002571871],"domain_scores_gemma":[0.9052214,0.08280574,0.002786923,0.00389751,0.003903212,0.001385248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.01161591,0.001312658,0.5405209,0.0005830203,0.002182205,0.0004776505,0.002350533,0.01748898,0.3193862,0.002575438,0.0003995108,0.1011069],"study_design_scores_gemma":[0.0008994153,0.01281787,0.6198484,0.0001503303,0.002500741,0.003037513,0.003248946,0.1741679,0.1715655,0.006494669,0.005107686,0.000161084],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908627,0.0002252419,0.007244301,0.0001111495,0.00001448449,0.00002524843,0.000449949,0.00002343147,0.001043484],"genre_scores_gemma":[0.9874664,0.0000895043,0.01118286,0.0000440164,0.00001616514,0.00002421344,0.0009818461,0.00002441215,0.0001707206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01023764,"threshold_uncertainty_score":0.05414253,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2940048539","doi":"10.1016/j.ympev.2019.04.012","title":"A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem","year":2019,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Tula Foundation; Bamfield Marine Sciences Centre; University of British Columbia","funders":"Killam Trusts; Natural Sciences and Engineering Research Council of Canada; Phycological Society of America","keywords":"Biology; Kelp; Phylogenetics; Ecosystem; Ecology; Evolutionary biology","authors":[{"name":"Samuel Starko","is_ca":true},{"name":"Marybel Soto Gomez","is_ca":true},{"name":"Hayley Darby","is_ca":true},{"name":"Kyle Demes","is_ca":true},{"name":"Hiroshi Kawai","is_ca":false},{"name":"Norishige Yotsukura","is_ca":false},{"name":"Sandra C. Lindstrom","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true},{"name":"Sean W. Graham","is_ca":true},{"name":"Patrick T. Martone","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005853773117518664,"gpt":0.1765309078367979,"spread":0.1706771347192792,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000496713,0.0002373432,0.0003808721,0.001260917,0.0008204561,0.0008248475,0.0003591656,0.0003850871,0.001951522],"category_scores_gemma":[0.0007104087,0.0002552115,0.0002180181,0.001608238,0.0007360213,0.001572307,0.00129898,0.0009160915,0.000459717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003098628,"about_ca_system_score_gemma":0.00071205,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001428976,"about_ca_topic_score_gemma":0.005685187,"domain_scores_codex":[0.9998592,0.00001900408,0.000009777386,0.00005626541,0.00002850133,0.00002718244],"domain_scores_gemma":[0.9993522,0.0001670477,0.00012902,0.0001531926,0.0001049805,0.0000936499],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002794657,0.00007250378,0.1621277,0.0008377536,0.0004791135,0.001078772,0.00272336,0.01259095,0.4577364,0.02038508,0.002238862,0.33945],"study_design_scores_gemma":[0.00001409874,0.0002397237,0.8660314,0.0003330597,0.0004392369,0.002445278,0.001317823,0.009649729,0.01364357,0.02120337,0.08454782,0.000134938],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9354255,0.005802131,0.04467819,0.0008908529,0.00005339957,0.00001528103,0.001528366,0.0003466164,0.01125968],"genre_scores_gemma":[0.979629,0.00307229,0.01455332,0.0002207564,0.00002366523,0.000008336276,0.00120416,0.00006547321,0.001222931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001951522,"threshold_uncertainty_score":0.006528497,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2905725537","doi":"10.1016/j.ympev.2018.12.002","title":"Molecular phylogeny and evolution of world Tachinidae (Diptera)","year":2018,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Diptera species taxonomy and behavior","field":"Agricultural and Biological Sciences","cited_by":112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Division of Environmental Biology; Sapienza Università di Roma; National Science Foundation of Sri Lanka; University of Arizona","keywords":"Tachinidae; Biology; Clade; Phylogenetics; Evolutionary biology; Sister group; Phylogenetic tree; Zoology; Parasitoid; Host (biology); Ecology; Genetics","authors":[{"name":"John O. Stireman","is_ca":false},{"name":"Pierfilippo Cerretti","is_ca":false},{"name":"James E. O’Hara","is_ca":true},{"name":"Jeremy D. Blaschke","is_ca":false},{"name":"John K. Moulton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009119670191453525,"gpt":0.2017880035257307,"spread":0.1926683333342772,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000267492,0.0002736176,0.000180443,0.001548852,0.0006924882,0.0007621573,0.0002993965,0.0005402819,0.001206317],"category_scores_gemma":[0.0004890756,0.0002093674,0.0001792054,0.001235683,0.0004436738,0.0007778347,0.000345701,0.0006587822,0.0002806594],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004307788,"about_ca_system_score_gemma":0.000210113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002194375,"about_ca_topic_score_gemma":0.004023734,"domain_scores_codex":[0.999872,0.00001915005,0.00001010822,0.00005296305,0.00002542851,0.0000203436],"domain_scores_gemma":[0.9994615,0.0001389116,0.0002119948,0.000034888,0.00008185848,0.0000709755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006674893,0.0001164998,0.1387243,0.0003058586,0.0001821059,0.0004412912,0.00164892,0.001432334,0.7448999,0.00442686,0.0005686244,0.1065857],"study_design_scores_gemma":[0.00001701333,0.000126284,0.9776354,0.00008869438,0.0001097758,0.0008098448,0.000422925,0.002414186,0.007199619,0.0009776012,0.01017352,0.00002522533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889998,0.004952646,0.001863527,0.0001612993,0.00002665113,0.00001138066,0.0003265957,0.00003208558,0.003626109],"genre_scores_gemma":[0.9942114,0.001781452,0.00210165,0.0001136735,0.00002843821,0.00001178863,0.0007488696,0.00001500748,0.0009877963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002194375,"threshold_uncertainty_score":0.00436312,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078455727","doi":"10.1016/j.ympev.2005.07.007","title":"A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites","year":2005,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Molecular clock; Phylogenetic tree; Mitochondrial DNA; Molecular evolution; Galliformes; Evolutionary biology; Phylogenetics; Pseudogene; Rate of evolution; Genetics; Gene; Paleontology; Genome","authors":[{"name":"Sérgio L. Pereira","is_ca":true},{"name":"Allan J. Baker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01091821898721713,"gpt":0.2707568471646882,"spread":0.2598386281774711,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004670409,0.0004902539,0.0007155028,0.0009188591,0.000815345,0.002082025,0.001021748,0.001458926,0.002038386],"category_scores_gemma":[0.02493202,0.000848168,0.0006744479,0.0007505167,0.001189093,0.004220242,0.001361034,0.002159462,0.0002943515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00117463,"about_ca_system_score_gemma":0.0006605982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002577913,"about_ca_topic_score_gemma":0.001842665,"domain_scores_codex":[0.9993663,0.0001832515,0.00004508381,0.0002608625,0.00006624017,0.0000782307],"domain_scores_gemma":[0.9904846,0.005954817,0.001542412,0.001020875,0.0004888949,0.0005083227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009132969,0.00007182482,0.3594444,0.0009690767,0.001017417,0.001005289,0.002781732,0.2254486,0.1082001,0.1948044,0.001976277,0.1033676],"study_design_scores_gemma":[0.0000665347,0.0002051075,0.3314207,0.0001475595,0.0004459197,0.001372305,0.0006481095,0.5125845,0.007372911,0.1401418,0.005385478,0.0002090765],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.863534,0.002478132,0.1291327,0.001631667,0.0001674127,0.00003209003,0.0003912406,0.0002276055,0.002405209],"genre_scores_gemma":[0.9865456,0.0003177475,0.01235884,0.00007810359,0.00007661412,0.00002413574,0.0001507219,0.00008309003,0.0003651539],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004670409,"threshold_uncertainty_score":0.02469981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034680164","doi":"10.1016/j.ympev.2008.09.002","title":"Divergent evolution of the thiolase superfamily and chalcone synthase family","year":2008,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Pharmacological Effects of Natural Compounds","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":110,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Regina","funders":"Fundación Universitaria de Navarra; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Chalcone synthase; Thiolase; SUPERFAMILY; Genetics; Evolutionary biology; Chalcone; Computational biology; Gene; Biosynthesis; Stereochemistry","authors":[{"name":"Chuan Jiang","is_ca":true},{"name":"Sang‐Wook Kim","is_ca":true},{"name":"Dae‐Yeon Suh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05505036089792135,"gpt":0.3357455639542972,"spread":0.2806952030563759,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006340403,0.0002334479,0.0003150519,0.0008926207,0.0003687329,0.0005446668,0.0004160465,0.0006752895,0.001311663],"category_scores_gemma":[0.0005639647,0.000222692,0.0002307534,0.000633056,0.0005773811,0.0005021524,0.0004690031,0.000735522,0.0004694142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006201825,"about_ca_system_score_gemma":0.0003834705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001204033,"about_ca_topic_score_gemma":0.001310416,"domain_scores_codex":[0.9998047,0.00004238674,0.000009842677,0.00006107044,0.00004552119,0.00003643391],"domain_scores_gemma":[0.9995968,0.00009043314,0.0000747335,0.00005337113,0.0001193691,0.00006529209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009512306,0.000109385,0.01557167,0.000176601,0.00008657697,0.0004402968,0.0007264371,0.001596953,0.8969939,0.005786637,0.0002270146,0.07733316],"study_design_scores_gemma":[0.0002681993,0.001497656,0.699222,0.0001679042,0.0002509045,0.006961797,0.001430255,0.0178649,0.1714417,0.008759641,0.09195611,0.00017899],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893552,0.003237539,0.002837921,0.0003248376,0.00001508122,0.00001421495,0.0001198661,0.00004736694,0.004048001],"genre_scores_gemma":[0.990944,0.002230894,0.002434913,0.0001796718,0.00002535242,0.00001192089,0.000311973,0.00002151684,0.003839821],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001311663,"threshold_uncertainty_score":0.004499793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1986236977","doi":"10.1016/j.ympev.2007.10.002","title":"Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life","year":2007,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Ascomycota; Clade; Taxon; Phylogenetic tree; Phylogenetics; Decomposer; Evolutionary biology; Lineage (genetic); Taxonomic rank; Ecology; Ecosystem; Genetics; Gene","authors":[{"name":"Teresita M. Porter","is_ca":true},{"name":"Christopher W. Schadt","is_ca":false},{"name":"L. Rizvi","is_ca":true},{"name":"A. P. Martin","is_ca":false},{"name":"Steven K. Schmidt","is_ca":false},{"name":"L. Scott-Denton","is_ca":false},{"name":"Rytas Vilgalys","is_ca":false},{"name":"Jean‐Marc Moncalvo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007442786522770427,"gpt":0.2162714559879831,"spread":0.2088286694652127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000482484,0.0002040412,0.0005546947,0.001939959,0.0010419,0.00119247,0.0003762068,0.0007034933,0.002542393],"category_scores_gemma":[0.001277176,0.0001559838,0.0002399301,0.00161227,0.0009072574,0.0007565953,0.0009778995,0.0007904111,0.0008822659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002721788,"about_ca_system_score_gemma":0.0005095092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009071222,"about_ca_topic_score_gemma":0.00147175,"domain_scores_codex":[0.9995911,0.00003511532,0.00002813513,0.0001815041,0.0000833652,0.00008077782],"domain_scores_gemma":[0.9976672,0.0005188173,0.0004587391,0.0005088669,0.0003804468,0.0004659303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005825949,0.0001499093,0.2385791,0.0002617379,0.0001046347,0.0008066106,0.002849907,0.0004214573,0.6456804,0.00372586,0.0002991693,0.1065386],"study_design_scores_gemma":[0.00002370937,0.0005226668,0.9582657,0.00004824853,0.0000857723,0.0047281,0.00128671,0.0009759688,0.01620025,0.002212613,0.01560844,0.00004166056],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852254,0.0007601408,0.008557385,0.0001272742,0.00003079554,0.00003225736,0.0004277036,0.0001103046,0.004728668],"genre_scores_gemma":[0.992681,0.0003739766,0.004759057,0.0001298578,0.00004076285,0.00001789466,0.0007929629,0.00003048359,0.001174168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002542393,"threshold_uncertainty_score":0.008505225,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3004672995","doi":"10.1016/j.ympev.2020.106755","title":"Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution","year":2020,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Aquatic Invertebrate Ecology and Behavior","field":"Environmental Science","cited_by":106,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"European Regional Development Fund; Japan Science and Technology Agency; Fundação para a Ciência e a Tecnologia; Nakdonggang National Institute of Biological Resources; Programa Operacional Temático Factores de Competitividade; Russian Science Foundation; Providence Health Care; Russian Foundation for Basic Research; European Commission; Ministry of Science and Higher Education of the Russian Federation; Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation","keywords":"Unionidae; Biology; Bivalvia; Systematics; Zoology; Phylogenetics; Ecology; Mollusca; Taxonomy (biology)","authors":[{"name":"Manuel Lopes‐Lima","is_ca":false},{"name":"Akimasa Hattori","is_ca":false},{"name":"Takaki Kondo","is_ca":false},{"name":"Jin Hee Lee","is_ca":false},{"name":"Sang Ki Kim","is_ca":false},{"name":"Akihisa Shirai","is_ca":false},{"name":"Hironori Hayashi","is_ca":false},{"name":"Taira Usui","is_ca":false},{"name":"Kanta Sakuma","is_ca":false},{"name":"Taishi Toriya","is_ca":false},{"name":"Youhei Sunamura","is_ca":false},{"name":"Haruki Ishikawa","is_ca":false},{"name":"Naoki Hoshino","is_ca":false},{"name":"Yushi Kusano","is_ca":false},{"name":"Hinata Kumaki","is_ca":false},{"name":"Yuya Utsugi","is_ca":false},{"name":"Shinnosuke Yabe","is_ca":false},{"name":"Yuma Yoshinari","is_ca":false},{"name":"Hazuki Hiruma","is_ca":false},{"name":"Akiko Tanaka","is_ca":false},{"name":"Kentaro Sao","is_ca":false},{"name":"Takuya Ueda","is_ca":false},{"name":"Isao Sano","is_ca":false},{"name":"Jun‐ichi Miyazaki","is_ca":false},{"name":"Duarte V. Gonçãlves","is_ca":false},{"name":"Olga K. Klishko","is_ca":false},{"name":"Ekaterina S. Konopleva","is_ca":false},{"name":"Ilya V. Vikhrev","is_ca":false},{"name":"Alexander V. Kondakov","is_ca":false},{"name":"Mikhail Y. Gofarov","is_ca":false},{"name":"Ivan N. Bolotov","is_ca":false},{"name":"Elena M. Sayenko","is_ca":false},{"name":"Мarianna Soroкa","is_ca":false},{"name":"Alexandra Zieritz","is_ca":false},{"name":"Arthur E. Bogan","is_ca":false},{"name":"Elsa Froufe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01042737973861455,"gpt":0.1916433220493265,"spread":0.181215942310712,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001941652,0.0003466461,0.0002469914,0.001462764,0.001057649,0.0005921554,0.0002888313,0.0002727638,0.001262872],"category_scores_gemma":[0.0002254516,0.0002000875,0.0001984701,0.001251851,0.0007956852,0.000458046,0.000629562,0.0003700481,0.0002536908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004301091,"about_ca_system_score_gemma":0.000388001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00997178,"about_ca_topic_score_gemma":0.02562113,"domain_scores_codex":[0.9998863,0.0000107734,0.00001291667,0.00004469559,0.00002139092,0.0000240899],"domain_scores_gemma":[0.9997221,0.00003420216,0.0000965674,0.00002232673,0.00005939775,0.00006553085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003536991,0.00005792957,0.8677638,0.0001612518,0.0001200589,0.0004738725,0.008766492,0.0003598804,0.0648436,0.0003156941,0.0001981117,0.05658565],"study_design_scores_gemma":[0.000004122167,0.00004895691,0.9963894,0.00002664372,0.00002436388,0.0004971263,0.001111108,0.0001458417,0.0004188018,0.00005199725,0.001274403,0.000007158591],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987432,0.0004251936,0.0001483277,0.0000145464,0.00000232366,0.00000229301,0.00006625223,0.000005989927,0.0005918448],"genre_scores_gemma":[0.9986305,0.0004041823,0.0002299689,0.00002453813,0.000003230675,0.00000307493,0.0002079134,0.000004005278,0.0004925622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00997178,"threshold_uncertainty_score":0.01982743,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099220281","doi":"10.1016/s1055-7903(02)00260-9","title":"Cryptic lineages in a small frog: the post-glacial history of the spring peeper, Pseudacris crucifer (Anura: Hylidae)","year":2002,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Hylidae; Biology; Crucifer; Spring (device); Zoology; Botany; Physics","authors":[{"name":"James D. Austin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01104171073201754,"gpt":0.1829312880213669,"spread":0.1718895772893493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003028241,0.0002119371,0.0002954795,0.001238243,0.001072391,0.0006412452,0.0004864453,0.0004580124,0.001193619],"category_scores_gemma":[0.0007093722,0.0002011355,0.0001460417,0.00082907,0.001117108,0.0004428067,0.0006365912,0.0003485172,0.0001556236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005649967,"about_ca_system_score_gemma":0.0003034822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008505004,"about_ca_topic_score_gemma":0.02699355,"domain_scores_codex":[0.9998608,0.00002740143,0.00001174121,0.00005229727,0.00001694592,0.00003082333],"domain_scores_gemma":[0.9995919,0.00008043765,0.0001578703,0.00003373366,0.00005144986,0.00008463933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001420226,0.0001425177,0.7405347,0.0001698767,0.0001734837,0.001438564,0.007200351,0.0009886057,0.2176739,0.002215108,0.0001333597,0.02790928],"study_design_scores_gemma":[0.00002258804,0.0001572338,0.995757,0.00001393865,0.00003525969,0.0009854097,0.0009715813,0.0005699134,0.0006292536,0.0002574529,0.0005857418,0.00001467161],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997062,0.00007089747,0.00005258729,0.00001035866,6.468568e-7,0.000001775222,0.0000178619,0.00000186224,0.0001378856],"genre_scores_gemma":[0.9996431,0.0000509175,0.0001146222,0.00001052167,0.000002257151,0.000003022561,0.00005757149,0.000001836033,0.0001162198],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008505004,"threshold_uncertainty_score":0.01691103,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120128308","doi":"10.1006/mpev.2000.0828","title":"The Granule-Bound Starch Synthase (GBSSI) Gene in the Rosaceae: Multiple Loci and Phylogenetic Utility","year":2000,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Horticultural and Viticultural Research","field":"Agricultural and Biological Sciences","cited_by":106,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Phylogenetic tree; Intron; Genetics; Locus (genetics); Phylogenetics; Gene","authors":[{"name":"Rodger C. Evans","is_ca":true},{"name":"Lawrence A. Alice","is_ca":false},{"name":"Christopher S. Campbell","is_ca":false},{"name":"Elizabeth A. Kellogg","is_ca":false},{"name":"Timothy A. Dickinson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01675142380770745,"gpt":0.2366336863970746,"spread":0.2198822625893672,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003292936,0.0002333814,0.0003367853,0.0007543708,0.0002481622,0.0004338984,0.0002412011,0.0003099045,0.0004046078],"category_scores_gemma":[0.0004274429,0.0001538529,0.0002351412,0.000562973,0.0002626617,0.0003460101,0.0003947321,0.0006213748,0.0001825684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002653803,"about_ca_system_score_gemma":0.0001617653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006572956,"about_ca_topic_score_gemma":0.0009442735,"domain_scores_codex":[0.9998975,0.00001330708,0.000006923005,0.00004760937,0.00001984853,0.00001480045],"domain_scores_gemma":[0.9996363,0.0001183519,0.00008494544,0.00004287859,0.00004373976,0.00007377627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003607264,0.00003296355,0.01571534,0.00006323472,0.00002587551,0.0001595571,0.0002821439,0.0006030863,0.959421,0.0006086457,0.00003027607,0.02269728],"study_design_scores_gemma":[0.0001054573,0.0005334463,0.7684981,0.0002077554,0.0002566227,0.002514014,0.0007156726,0.008733126,0.2031116,0.004450054,0.01077676,0.00009740254],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952615,0.0009116715,0.00306297,0.00006938336,0.000005683191,0.000004602239,0.0001691287,0.00002625098,0.0004887345],"genre_scores_gemma":[0.9944107,0.0004125738,0.004145761,0.00002719609,0.00001258957,0.000006433547,0.0005624778,0.00001652956,0.0004056162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007543708,"threshold_uncertainty_score":0.001925409,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}