{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":130,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":130,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"b571de4cc273","filters":{"venue":"Molecular Systems Biology"}},"results":[{"id":"W2128036243","doi":"10.1038/msb4100134","title":"Large‐scale mapping of human protein–protein interactions by mass spectrometry","year":2007,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1001,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; PROTO Manufacturing (Canada); University of Ottawa; MaRS","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Mass spectrometry; Computational biology; Scale (ratio); Proteomics; Biochemistry; Chromatography; Gene; Cartography","authors":[{"name":"Rob M. Ewing","is_ca":true},{"name":"Peter C. Chu","is_ca":false},{"name":"Fred Elisma","is_ca":true},{"name":"Hongyan Li","is_ca":false},{"name":"Paul Taylor","is_ca":false},{"name":"Shane Climie","is_ca":false},{"name":"Linda DB McBroom-Cerajewski","is_ca":false},{"name":"Mark D. Robinson","is_ca":false},{"name":"Liam O’Connor","is_ca":false},{"name":"Michael Li","is_ca":false},{"name":"Rod S. Taylor","is_ca":false},{"name":"Moyez Dharsee","is_ca":true},{"name":"Yuen Ho","is_ca":false},{"name":"Adrian Heilbut","is_ca":false},{"name":"Lynda Moore","is_ca":false},{"name":"Shudong Zhang","is_ca":false},{"name":"Olga Ornatsky","is_ca":false},{"name":"Yury V. Bukhman","is_ca":false},{"name":"Martin Ethier","is_ca":true},{"name":"Yinglun Sheng","is_ca":true},{"name":"Julian Vasilescu","is_ca":true},{"name":"Mohamed Abu‐Farha","is_ca":true},{"name":"Jean‐Philippe Lambert","is_ca":true},{"name":"Henry S. Duewel","is_ca":false},{"name":"Ian I. Stewart","is_ca":true},{"name":"Bonnie Kuehl","is_ca":false},{"name":"Kelly Hogue","is_ca":false},{"name":"Karen Colwill","is_ca":false},{"name":"Katharine Gladwish","is_ca":false},{"name":"Brenda Muskat","is_ca":false},{"name":"Robert Kinach","is_ca":false},{"name":"Sally‐Lin Adams","is_ca":false},{"name":"Michael F. Moran","is_ca":false},{"name":"Gregg B. Morin","is_ca":false},{"name":"Thodoros Topaloglou","is_ca":true},{"name":"Daniel Figeys","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006306790476073409,"gpt":0.2410506937210171,"spread":0.2347439032449437,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004637378,0.0004444259,0.0005327482,0.001526793,0.0004486208,0.0004055483,0.0003363039,0.0003172467,0.0009012492],"category_scores_gemma":[0.0007084754,0.0001557982,0.0003808957,0.001563753,0.0001716097,0.0002807819,0.0004465794,0.0004561202,0.0007769261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000215515,"about_ca_system_score_gemma":0.0002077369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006766146,"about_ca_topic_score_gemma":0.001124896,"domain_scores_codex":[0.9995896,0.00007707164,0.00002735221,0.0001196735,0.0001556348,0.00003062177],"domain_scores_gemma":[0.9996432,0.0001596913,0.00008293585,0.00004393334,0.0000361813,0.00003404431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003380632,0.0001179708,0.01837242,0.0002144377,0.0002180904,0.0005248706,0.0001014472,0.0008254339,0.9537185,0.0003857274,0.001182158,0.02400094],"study_design_scores_gemma":[0.000072,0.0004372574,0.2722639,0.00004445294,0.000336693,0.005387817,0.0002572493,0.02106464,0.6691507,0.002992979,0.02792835,0.00006379632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8976943,0.009477811,0.07976894,0.0004087121,0.00004399278,0.0001316023,0.008819047,0.0008333815,0.002822209],"genre_scores_gemma":[0.8937086,0.00368032,0.08641245,0.0001818008,0.0000415682,0.0001510563,0.01474233,0.00008558345,0.0009963702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001526793,"threshold_uncertainty_score":0.003014982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111354165","doi":"10.15252/msb.20145379","title":"Emergence of robust growth laws from optimal regulation of ribosome synthesis","year":2014,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":493,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"National Institute of General Medical Sciences; Center for Theoretical Biological Physics; National Institutes of Health","keywords":"Biology; Ribosome; Synthetic biology; Protein biosynthesis; Ribosomal protein; Computational biology; Biochemical engineering; Cell biology; Genetics; RNA; Gene","authors":[{"name":"Matthew P. Scott","is_ca":true},{"name":"Stefan Klumpp","is_ca":false},{"name":"Eduard M. Mateescu","is_ca":false},{"name":"Terence Hwa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00942719039213346,"gpt":0.2120757515978154,"spread":0.2026485612056819,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004422088,0.0002752893,0.0004137959,0.0002784116,0.0002175662,0.0009012531,0.0004917209,0.000537269,0.0005067328],"category_scores_gemma":[0.002274637,0.0002904625,0.0004096045,0.0001233567,0.001403947,0.0007962913,0.0005602628,0.0006538532,0.0001076616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007730474,"about_ca_system_score_gemma":0.0004508909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000711709,"about_ca_topic_score_gemma":0.0005246584,"domain_scores_codex":[0.9997571,0.00005194511,0.0000130456,0.00006022705,0.00007747997,0.00004024732],"domain_scores_gemma":[0.9992697,0.0003420043,0.0001832023,0.00009836909,0.0000616571,0.00004510069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001275405,0.00007443655,0.002743793,0.0001213348,0.00005710204,0.0004494243,0.0002277452,0.3570486,0.1769021,0.4493736,0.001077148,0.01179711],"study_design_scores_gemma":[0.00002283423,0.00003731069,0.001355455,0.000007927868,0.0000081502,0.00006220617,0.00003100191,0.8504685,0.009698039,0.1376093,0.000670849,0.00002832782],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6789697,0.0005528513,0.3040392,0.00114776,0.00007835414,0.00003187855,0.0001695331,0.0006448283,0.01436582],"genre_scores_gemma":[0.9916055,0.0001249806,0.007717447,0.00005487603,0.00001365342,0.00002819549,0.00002774031,0.00004172802,0.0003858687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009012531,"threshold_uncertainty_score":0.005608857,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138164217","doi":"10.15252/msb.20145216","title":"Measuring error rates in genomic perturbation screens: gold standards for human functional genomics","year":2014,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":464,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; Princess Margaret Cancer Centre; University Health Network; Ontario Institute for Cancer Research; University of Toronto","funders":"Ontario Institute for Cancer Research; Ontario Ministry of Research and Innovation; Canadian Institute for Advanced Research","keywords":"CRISPR; Biology; Computational biology; Functional genomics; RNA interference; Gene; Genomics; Genetics; Genome; RNA","authors":[{"name":"Traver Hart","is_ca":true},{"name":"Kevin R. Brown","is_ca":true},{"name":"Fabrice Sircoulomb","is_ca":true},{"name":"Robert Rottapel","is_ca":true},{"name":"Jason Moffat","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02152405074075081,"gpt":0.3064075218976376,"spread":0.2848834711568868,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.07458206,0.002203394,0.002497287,0.006038864,0.001330318,0.003019588,0.003156931,0.003783956,0.00083072],"category_scores_gemma":[0.20512,0.0008571922,0.001787922,0.003710158,0.004799133,0.002815622,0.002889192,0.004123812,0.0006039588],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002630527,"about_ca_system_score_gemma":0.002118719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002019489,"about_ca_topic_score_gemma":0.002842314,"domain_scores_codex":[0.9049976,0.04769473,0.007071416,0.01048881,0.02852677,0.001220739],"domain_scores_gemma":[0.7271197,0.1970324,0.02055111,0.03886646,0.01507524,0.001355061],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001509366,0.0007714585,0.1437421,0.003998573,0.002630937,0.0008284083,0.002820744,0.1271751,0.1471517,0.1063834,0.009757564,0.4532307],"study_design_scores_gemma":[0.000154457,0.001465744,0.09829374,0.001454602,0.0008698057,0.002018683,0.000502581,0.3987099,0.2393464,0.2232739,0.03335645,0.0005538804],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.03443749,0.001729674,0.959493,0.0003407404,0.0001039541,0.0002394651,0.0008584171,0.001188371,0.001608897],"genre_scores_gemma":[0.4050427,0.001285234,0.5864834,0.001029525,0.0001346453,0.001355883,0.002599172,0.001039663,0.001029723],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.925418,"threshold_uncertainty_score":0.3944324,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163783674","doi":"10.1038/msb.2008.55","title":"InnateDB: facilitating systems‐level analyses of the mammalian innate immune response","year":2008,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":407,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Sanofi Pasteur; Canada Research Chairs; Genome British Columbia; Michael Smith Health Research BC; Canadian Institutes of Health Research; National Institute for Health and Care Research; Genome Canada; Foundation for the National Institutes of Health","keywords":"Biology; Innate immune system; Immune system; Computational biology; Immunology","authors":[{"name":"David J. Lynn","is_ca":true},{"name":"Geoffrey L. Winsor","is_ca":true},{"name":"Calvin C. Chan","is_ca":true},{"name":"Nicolas Richard","is_ca":true},{"name":"Matthew R. Laird","is_ca":true},{"name":"Aaron Barsky","is_ca":true},{"name":"Jennifer L. Gardy","is_ca":true},{"name":"Fiona Roche","is_ca":true},{"name":"Timothy H.W. Chan","is_ca":true},{"name":"Naisha Shah","is_ca":true},{"name":"Raymond Lo","is_ca":true},{"name":"Misbah Naseer","is_ca":true},{"name":"Jaimmie Que","is_ca":true},{"name":"Melissa Yau","is_ca":true},{"name":"M. Acab","is_ca":true},{"name":"Dan Tulpan","is_ca":true},{"name":"Matthew D. Whiteside","is_ca":true},{"name":"Avinash Chikatamarla","is_ca":true},{"name":"Bernadette Mah","is_ca":true},{"name":"Tamara Munzner","is_ca":true},{"name":"Karsten Hokamp","is_ca":false},{"name":"Robert E. W. Hancock","is_ca":true},{"name":"Fiona S. L. Brinkman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04816190081765136,"gpt":0.2838055398048725,"spread":0.2356436389872211,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004192864,0.002299948,0.002145066,0.002969595,0.001377626,0.004010453,0.003356985,0.001167425,0.0169326],"category_scores_gemma":[0.003889916,0.0013276,0.002547104,0.002240493,0.0006535524,0.002778223,0.003803795,0.003038508,0.009246815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001132872,"about_ca_system_score_gemma":0.002205176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002846222,"about_ca_topic_score_gemma":0.003069999,"domain_scores_codex":[0.9986901,0.0002914387,0.0001693839,0.0003413401,0.0003939471,0.0001137909],"domain_scores_gemma":[0.9985452,0.0006847784,0.0001537977,0.0003236597,0.000152502,0.000140184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004849275,0.001009924,0.01599167,0.01180406,0.002589412,0.001955156,0.002634723,0.03950397,0.1811874,0.07084473,0.441909,0.2257206],"study_design_scores_gemma":[0.00094687,0.0004472117,0.01356425,0.000941797,0.0007630331,0.00112897,0.000632535,0.2441612,0.08642735,0.09942925,0.551102,0.0004554995],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01754608,0.002121629,0.4664501,0.0007772751,0.0003991621,0.0005671025,0.09836177,0.403102,0.01067484],"genre_scores_gemma":[0.09506709,0.00399803,0.6799938,0.0007422564,0.0002491789,0.002369785,0.1860601,0.02711803,0.00440179],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0169326,"threshold_uncertainty_score":0.05664521,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2252575065","doi":"10.15252/msb.20156492","title":"Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation","year":2015,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":397,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Biotechnology and Biological Sciences Research Council; RIKEN; Medical Research Council; Canadian Institutes of Health Research; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Epigenetics; Chromatin; Library science; Biology; Humanities; Genetics; DNA; Computer science; Art; Gene","authors":[{"name":"James A. Fraser","is_ca":true},{"name":"Carmelo Ferrai","is_ca":false},{"name":"Andrea M. Chiariello","is_ca":false},{"name":"Markus Schueler","is_ca":false},{"name":"Tiago Rito","is_ca":false},{"name":"Giovanni Laudanno","is_ca":false},{"name":"Mariano Barbieri","is_ca":false},{"name":"Benjamin L. Moore","is_ca":false},{"name":"Dorothee Kraemer","is_ca":false},{"name":"Stuart Aitken","is_ca":false},{"name":"Sheila Q. Xie","is_ca":false},{"name":"Kelly J Morris","is_ca":false},{"name":"Masayoshi Itoh","is_ca":false},{"name":"Hideya Kawaji","is_ca":false},{"name":"Ines Jaeger","is_ca":false},{"name":"Yoshihide Hayashizaki","is_ca":false},{"name":"Piero Carninci","is_ca":false},{"name":"Alistair R. R. Forrest","is_ca":false},{"name":"Colin A. Semple","is_ca":false},{"name":"Josée Dostie","is_ca":true},{"name":"Ana Pombo","is_ca":true},{"name":"Mario Nicodemi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01127553539157907,"gpt":0.2196581492160791,"spread":0.2083826138245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001016317,0.0001291708,0.0001212518,0.0002165044,0.0001549211,0.0003970303,0.0001145073,0.0002051146,0.0006624227],"category_scores_gemma":[0.0002174513,0.0001774649,0.0001485204,0.0002804339,0.0003377098,0.000279457,0.0002638237,0.0002811288,0.00017066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002719865,"about_ca_system_score_gemma":0.0001202759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005111471,"about_ca_topic_score_gemma":0.0007766352,"domain_scores_codex":[0.9999182,0.00001039454,0.000005559236,0.00002481593,0.00002143997,0.00001955993],"domain_scores_gemma":[0.9998431,0.00002935681,0.00006704707,0.00002025369,0.00001767431,0.00002248284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005730572,0.00001143554,0.003479966,0.0000305794,0.000006511277,0.00004271244,0.00005125527,0.001691059,0.9907861,0.0005529433,0.00002722986,0.003262946],"study_design_scores_gemma":[0.000009532877,0.0001907801,0.1498211,0.0000157989,0.00002154634,0.0002291251,0.0001728027,0.01887139,0.8274923,0.001251447,0.001899723,0.0000244976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936094,0.0003883473,0.005128922,0.00002560554,0.000003137927,0.000005794685,0.00006212276,0.00005140805,0.0007252608],"genre_scores_gemma":[0.9978448,0.00021258,0.001479204,0.00001223125,0.000001323842,0.000007014861,0.00006188849,0.0000113465,0.0003696184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006624227,"threshold_uncertainty_score":0.002215981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121806138","doi":"10.1038/msb4100187","title":"Programming gene expression with combinatorial promoters","year":2007,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":381,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Sandia National Laboratories; National Institute of General Medical Sciences; National Institutes of Health; Fondation pour la Recherche Médicale; Alberta Heritage Foundation for Medical Research; National Physical Science Consortium; California Institute of Technology","keywords":"Promoter; Biology; Computational biology; Synthetic biology; Gene; Genetics; Cis-regulatory module; Regulation of gene expression; Transcription factor; Gene expression","authors":[{"name":"Robert Sidney Cox","is_ca":false},{"name":"Michael G. Surette","is_ca":true},{"name":"Michael B. Elowitz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004974958743792781,"gpt":0.2257753253879027,"spread":0.2208003666441099,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000391934,0.0004191284,0.0003764396,0.0004733378,0.0002711722,0.0005650847,0.0005936807,0.0002152544,0.0007527525],"category_scores_gemma":[0.001034802,0.0002689776,0.0004852226,0.0005127129,0.0007503894,0.0005639585,0.0004441934,0.0004628354,0.0002296481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005389528,"about_ca_system_score_gemma":0.0003494296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002429045,"about_ca_topic_score_gemma":0.0004649054,"domain_scores_codex":[0.9996892,0.000075442,0.00002172655,0.0001020783,0.0000719957,0.00003967041],"domain_scores_gemma":[0.9996083,0.0001990561,0.00006983223,0.0000542976,0.00003835902,0.00003012736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002559001,0.0001376667,0.002567706,0.0004382047,0.00006316472,0.0002646229,0.0001824797,0.2025438,0.5997125,0.1113197,0.0005216763,0.08199259],"study_design_scores_gemma":[0.0000632661,0.0003246178,0.001011192,0.0000502228,0.00007746929,0.0003356353,0.00006348205,0.4515456,0.4796276,0.05827177,0.008575053,0.00005417039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2272428,0.0003043731,0.7666289,0.00009397054,0.0000222354,0.0001024609,0.0001452031,0.000970445,0.004489499],"genre_scores_gemma":[0.6954823,0.0004544071,0.3016487,0.00006399619,0.00001174701,0.0003312784,0.0003011484,0.0001773434,0.001528931],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0007527525,"threshold_uncertainty_score":0.003910422,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160845585","doi":"10.1038/msb.2009.83","title":"Strategies for cellular decision‐making","year":2009,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":338,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Ottawa Hospital Research Institute","keywords":"Biology; Probabilistic logic; Context (archaeology); Computational biology; Computer science; Risk analysis (engineering); Artificial intelligence; Business","authors":[{"name":"Theodore J. Perkins","is_ca":true},{"name":"Peter S. Swain","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02266296002253503,"gpt":0.3210741223669942,"spread":0.2984111623444592,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001159775,0.001605817,0.001184523,0.001648301,0.0007103092,0.002897384,0.002432731,0.003045632,0.003612512],"category_scores_gemma":[0.001242642,0.0004371936,0.0007035321,0.001625246,0.005592067,0.003739864,0.001285642,0.00305594,0.002985402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004203519,"about_ca_system_score_gemma":0.001955213,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001754032,"about_ca_topic_score_gemma":0.001196029,"domain_scores_codex":[0.999338,0.0001711291,0.00005330147,0.000155186,0.0002297303,0.00005274604],"domain_scores_gemma":[0.9995048,0.000247418,0.00005182445,0.00005979675,0.00009918986,0.00003706609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002326043,0.00003391021,0.0001473092,0.002433136,0.00005850566,0.0001717586,0.0002348333,0.005215664,0.00176573,0.7035164,0.01403922,0.2723603],"study_design_scores_gemma":[0.00001320855,0.00003168354,0.0002859048,0.0010887,0.00002666261,0.0005044505,0.000124063,0.001876286,0.001343452,0.3272685,0.6673933,0.00004377681],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001085323,0.9107233,0.03595653,0.005647719,0.00117442,0.00004188629,0.00006151727,0.0001096247,0.04519964],"genre_scores_gemma":[0.03691995,0.933645,0.01322372,0.001925195,0.0009907505,0.0001497223,0.00009681124,0.0000276754,0.01302117],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004203519,"threshold_uncertainty_score":0.03049874,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145435867","doi":"10.1038/msb.2011.77","title":"Controlled vocabularies and semantics in systems biology","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":331,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University; Terry Fox Research Institute","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; European Commission","keywords":"Ontology; Terminology; Semantics (computer science); Computer science; Systems biology; Reuse; Open Biomedical Ontologies; Biology; Data science; Semantic Web; Computational biology; Information retrieval; Ontology-based data integration; Programming language; Suggested Upper Merged Ontology","authors":[{"name":"Mélanie Courtot","is_ca":true},{"name":"Nick Juty","is_ca":false},{"name":"Christian Knüpfer","is_ca":false},{"name":"Dagmar Waltemath","is_ca":false},{"name":"Anna Zhukova","is_ca":false},{"name":"Andreas Dräger","is_ca":false},{"name":"Michel Dumontier","is_ca":true},{"name":"Andrew Finney","is_ca":false},{"name":"Martin Golebiewski","is_ca":false},{"name":"Janna Hastings","is_ca":false},{"name":"Stefan Hoops","is_ca":false},{"name":"Sarah Keating","is_ca":false},{"name":"Douglas B. Kell","is_ca":false},{"name":"Samuel Kerrien","is_ca":false},{"name":"James R. Lawson","is_ca":false},{"name":"Allyson Lister","is_ca":false},{"name":"James Lu","is_ca":false},{"name":"Rainer Machné","is_ca":false},{"name":"Pedro Mendes","is_ca":false},{"name":"Matthew Pocock","is_ca":false},{"name":"Nicolás Rodríguez","is_ca":false},{"name":"Alice Villéger","is_ca":false},{"name":"Darren J. Wilkinson","is_ca":false},{"name":"Sarala Wimalaratne","is_ca":false},{"name":"Camille Laibe","is_ca":false},{"name":"Michael Hucka","is_ca":false},{"name":"Nicolas Le Novère","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02141404991475278,"gpt":0.2575830418387564,"spread":0.2361689919240036,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01027147,0.001040728,0.001413518,0.007703903,0.003587874,0.009879626,0.002831889,0.003224836,0.004287957],"category_scores_gemma":[0.01817053,0.001074373,0.002105504,0.01043371,0.01170833,0.01846866,0.004103233,0.003850674,0.001249944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004559919,"about_ca_system_score_gemma":0.006105242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01456822,"about_ca_topic_score_gemma":0.006438496,"domain_scores_codex":[0.9924326,0.003245504,0.001603085,0.001050711,0.001349701,0.0003184239],"domain_scores_gemma":[0.9839343,0.01067019,0.00143001,0.002167828,0.001370616,0.0004270245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000008133205,0.000006970499,0.0001394702,0.0001636863,0.0000148966,0.0001066252,0.0006536306,0.001374103,0.0001934848,0.9854635,0.002593711,0.009281829],"study_design_scores_gemma":[0.00001375813,0.000008751141,0.0001584282,0.0002573942,0.00001753952,0.0001277672,0.0003899078,0.003448258,0.0002169981,0.9266778,0.06865722,0.00002615839],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01491417,0.02904873,0.8503628,0.02512681,0.00118899,0.0007503576,0.006524012,0.002199785,0.06988426],"genre_scores_gemma":[0.2876273,0.02446587,0.6540158,0.0057467,0.00158304,0.002532135,0.01260597,0.0008310148,0.01059206],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01456822,"threshold_uncertainty_score":0.05432135,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155626151","doi":"10.1038/msb.2011.71","title":"Systematic exploration of synergistic drug pairs","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":327,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto","funders":"National Human Genome Research Institute; National Institute of General Medical Sciences; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu; National Institute of Mental Health; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health","keywords":"Drug; Biology; Computational biology; Antifungal drug; Antifungal drugs; Pharmacology; Promiscuity; Bioavailability; Drug discovery; Drug development; Genetics; Bioinformatics; Candida albicans","authors":[{"name":"Murat Cokol","is_ca":false},{"name":"Hon Nian Chua","is_ca":true},{"name":"Murat Taşan","is_ca":true},{"name":"Beste Mutlu","is_ca":false},{"name":"Zohar Weinstein","is_ca":false},{"name":"Yo Suzuki","is_ca":false},{"name":"Mehmet Ercan Nergiz","is_ca":false},{"name":"Michael Costanzo","is_ca":true},{"name":"Anastasia Baryshnikova","is_ca":true},{"name":"Guri Giaever","is_ca":true},{"name":"Corey Nislow","is_ca":true},{"name":"Chad L. Myers","is_ca":false},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Frederick P. Roth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04421310378962579,"gpt":0.2785228367357592,"spread":0.2343097329461334,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001856533,0.0009757111,0.001760428,0.003989901,0.0006993605,0.001233847,0.0007439407,0.0005869701,0.004133902],"category_scores_gemma":[0.005973287,0.000675857,0.00223601,0.002211787,0.0006357282,0.001442928,0.001382058,0.000616242,0.0003782398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006640786,"about_ca_system_score_gemma":0.001805658,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005473645,"about_ca_topic_score_gemma":0.001042684,"domain_scores_codex":[0.9987547,0.0004468081,0.00009372414,0.0002738016,0.0003214575,0.0001095361],"domain_scores_gemma":[0.9964259,0.002418248,0.0004223738,0.0003593345,0.0002511925,0.0001228225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002928687,0.001191977,0.07846285,0.006110094,0.003830106,0.002904982,0.0004052551,0.3822918,0.05009495,0.08566915,0.009985661,0.3761245],"study_design_scores_gemma":[0.0004481574,0.002316629,0.01991391,0.0002985964,0.003183659,0.002544868,0.0003957639,0.770873,0.0317336,0.143085,0.02504855,0.0001582748],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8380083,0.01082438,0.1189999,0.0007161325,0.00008515393,0.0005904353,0.003885706,0.001210787,0.02567928],"genre_scores_gemma":[0.9314102,0.002086246,0.06076607,0.0002101947,0.00003437469,0.0003736649,0.003569704,0.00008683749,0.00146259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004133902,"threshold_uncertainty_score":0.01382929,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3080133182","doi":"10.15252/msb.20199110","title":"SBML Level 3: an extensible format for the exchange and reuse of biological models","year":2020,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":306,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute; University of Toronto","funders":"Los Alamos National Laboratory; Biological and Environmental Research; National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; Fundação para a Ciência e a Tecnologia; Japan Society for the Promotion of Science; University of California, San Diego; National Nuclear Security Administration; National Institutes of Health; Novo Nordisk Foundation Center for Basic Metabolic Research; Novo Nordisk; Ministerstvo Školství, Mládeže a Tělovýchovy; Bundesministerium für Bildung und Forschung; National Institute of Allergy and Infectious Diseases; Leibniz-Institut für Arbeitsforschung an der TU Dortmund; Agence Nationale de la Recherche; Universiteit Maastricht; Ministry of Education, Culture, Sports, Science and Technology; Institut National de la Santé et de la Recherche Médicale; Institut national de recherche en informatique et en automatique (INRIA); Deutsche Forschungsgemeinschaft; Klaus Tschira Stiftung; AstraZeneca; National Science Foundation; UK Research and Innovation; European Molecular Biology Laboratory; University of Connecticut; European Commission; Advanced Scientific Computing Research; U.S. Department of Energy; Alan Turing Institute; Novo Nordisk Fonden; Newcastle University; Russian Foundation for Basic Research; Biotechnology and Biological Sciences Research Council; Cancer Research UK; Siberian Branch, Russian Academy of Sciences","keywords":"Library science; SBML; Computer science; World Wide Web","authors":[{"name":"Sarah Keating","is_ca":false},{"name":"Dagmar Waltemath","is_ca":false},{"name":"Matthias König","is_ca":false},{"name":"Fengkai Zhang","is_ca":false},{"name":"Andreas Dräger","is_ca":false},{"name":"Claudine Chaouiya","is_ca":false},{"name":"Frank Bergmann","is_ca":false},{"name":"Andrew Finney","is_ca":false},{"name":"Colin S. Gillespie","is_ca":false},{"name":"Tomáš Helikar","is_ca":false},{"name":"Stefan Hoops","is_ca":false},{"name":"Rahuman S. Malik‐Sheriff","is_ca":false},{"name":"Stuart Moodie","is_ca":false},{"name":"Ion I. Moraru","is_ca":false},{"name":"Chris J. Myers","is_ca":false},{"name":"Aurélien Naldi","is_ca":false},{"name":"Brett G. Olivier","is_ca":false},{"name":"Sven Sahle","is_ca":false},{"name":"James C. Schaff","is_ca":false},{"name":"Lucian P. Smith","is_ca":false},{"name":"Maciej J. Swat","is_ca":false},{"name":"Denis Thieffry","is_ca":false},{"name":"Leandro Watanabe","is_ca":false},{"name":"Darren J. Wilkinson","is_ca":false},{"name":"Michael L. Blinov","is_ca":false},{"name":"Kimberly Begley","is_ca":false},{"name":"James R. Faeder","is_ca":false},{"name":"Harold Gómez","is_ca":false},{"name":"Thomas M. Hamm","is_ca":false},{"name":"Yuichiro Inagaki","is_ca":false},{"name":"Wolfram Liebermeister","is_ca":false},{"name":"Allyson Lister","is_ca":false},{"name":"Daniel Lucio","is_ca":false},{"name":"Eric Mjolsness","is_ca":false},{"name":"Carole J. Proctor","is_ca":false},{"name":"Karthik Raman","is_ca":false},{"name":"Nicolás Rodríguez","is_ca":false},{"name":"Clifford A. Shaffer","is_ca":false},{"name":"Bruce E. Shapiro","is_ca":false},{"name":"Joerg Stelling","is_ca":false},{"name":"Neil Swainston","is_ca":false},{"name":"Naoki Tanimura","is_ca":false},{"name":"John Wagner","is_ca":false},{"name":"Martin Meier‐Schellersheim","is_ca":false},{"name":"Herbert M. Sauro","is_ca":false},{"name":"Bernhard Ø. Palsson","is_ca":false},{"name":"Hamid Bolouri","is_ca":false},{"name":"Hiroaki Kitano","is_ca":false},{"name":"Akira Funahashi","is_ca":false},{"name":"Henning Hermjakob","is_ca":false},{"name":"John C. Doyle","is_ca":false},{"name":"Michael Hucka","is_ca":false},{"name":"Richard R. Adams","is_ca":false},{"name":"Nicholas Allen","is_ca":false},{"name":"Bastian R. Angermann","is_ca":false},{"name":"Marco Antoniotti","is_ca":true},{"name":"Gary D. Bader","is_ca":false},{"name":"Jan Červený","is_ca":true},{"name":"Mélanie Courtot","is_ca":false},{"name":"Chris D. Cox","is_ca":false},{"name":"Piero Dalle Pezze","is_ca":false},{"name":"Emek Demir","is_ca":false},{"name":"William S. Denney","is_ca":false},{"name":"Harish Dharuri","is_ca":false},{"name":"Julien Dorier","is_ca":false},{"name":"Dirk Drasdo","is_ca":false},{"name":"Ali Ebrahim","is_ca":false},{"name":"Johannes Eichner","is_ca":false},{"name":"Johan Elf","is_ca":false},{"name":"Lukas Endler","is_ca":false},{"name":"Chris T. Evelo","is_ca":false},{"name":"Christoph Flamm","is_ca":false},{"name":"Ronan M. T. Fleming","is_ca":false},{"name":"Martina Fröhlich","is_ca":false},{"name":"Mihai Glont","is_ca":false},{"name":"Emanuel Gonçalves","is_ca":false},{"name":"Martin Golebiewski","is_ca":false},{"name":"Hovakim Grabski","is_ca":false},{"name":"Alex Gutteridge","is_ca":false},{"name":"Leonard A. Harris","is_ca":false},{"name":"Ben Heavner","is_ca":false},{"name":"Ron Henkel","is_ca":false},{"name":"William S. Hlavacek","is_ca":false},{"name":"Bin Hu","is_ca":false},{"name":"Daniel R. Hyduke","is_ca":false},{"name":"Hidde de Jong","is_ca":false},{"name":"Nick Juty","is_ca":false},{"name":"Peter D. Karp","is_ca":false},{"name":"Douglas B. Kell","is_ca":false},{"name":"Roland Keller","is_ca":false},{"name":"Ilya Kiselev","is_ca":false},{"name":"Steffen Klamt","is_ca":false},{"name":"Edda Klipp","is_ca":false},{"name":"Christian Knüpfer","is_ca":false},{"name":"Fedor Kolpakov","is_ca":false},{"name":"Falko Krause","is_ca":false},{"name":"Martina Kutmon","is_ca":false},{"name":"Camille Laibe","is_ca":false},{"name":"Conor Lawless","is_ca":false},{"name":"Lu Li","is_ca":false},{"name":"Leslie M. Loew","is_ca":false},{"name":"Rainer Machné","is_ca":false},{"name":"Yukiko Matsuoka","is_ca":false},{"name":"Pedro Mendes","is_ca":false},{"name":"Huaiyu Mi","is_ca":false},{"name":"Florian Mittag","is_ca":false},{"name":"Pedro T. Monteiro","is_ca":false},{"name":"Kedar Nath Natarajan","is_ca":false},{"name":"Poul MF Nielsen","is_ca":false},{"name":"Tramy Nguyen","is_ca":false},{"name":"Alida Palmisano","is_ca":false},{"name":"Jean‐Baptiste Pettit","is_ca":false},{"name":"Thomas Pfau","is_ca":false},{"name":"Robert D. Phair","is_ca":false},{"name":"Tomas Radivoyevitch","is_ca":false},{"name":"Johann M. Rohwer","is_ca":false},{"name":"Oliver Ruebenacker","is_ca":false},{"name":"Julio Sáez-Rodríguez","is_ca":false},{"name":"Martin Scharm","is_ca":false},{"name":"Henning Schmidt","is_ca":false},{"name":"Falk Schreiber","is_ca":false},{"name":"Michaël Schubert","is_ca":false},{"name":"Roman Schulte","is_ca":false},{"name":"Stuart C. Sealfon","is_ca":false},{"name":"Kieran Smallbone","is_ca":false},{"name":"Sylvain Soliman","is_ca":false},{"name":"Melanie I. Stefan","is_ca":false},{"name":"Devin P. Sullivan","is_ca":false},{"name":"Koichi Takahashi","is_ca":false},{"name":"Bas Teusink","is_ca":false},{"name":"David Tolnay","is_ca":false},{"name":"Ibrahim Vazirabad","is_ca":false},{"name":"Axel von Kamp","is_ca":false},{"name":"Ulrike Wittig","is_ca":false},{"name":"Clemens Wrzodek","is_ca":false},{"name":"Finja Wrzodek","is_ca":false},{"name":"Ioannis Xénarios","is_ca":false},{"name":"Anna Zhukova","is_ca":false},{"name":"Jeremy Zucker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1370302979095098,"gpt":0.3330880094755154,"spread":0.1960577115660056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005394245,0.001439147,0.001509225,0.004489186,0.0003498549,0.002746675,0.004290962,0.002254801,0.00984869],"category_scores_gemma":[0.00705271,0.0008109679,0.001675624,0.003975482,0.001091315,0.00381114,0.002084975,0.004482402,0.008893861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001786313,"about_ca_system_score_gemma":0.00325446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002507218,"about_ca_topic_score_gemma":0.001898194,"domain_scores_codex":[0.9981851,0.0005305359,0.0003152135,0.0001626906,0.0007142035,0.00009224142],"domain_scores_gemma":[0.9962674,0.001988533,0.0002933816,0.0003833906,0.0008519497,0.0002155001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008397669,0.00007053401,0.0001752991,0.01233833,0.0001463168,0.0002813171,0.0002836793,0.003721328,0.003926594,0.0818992,0.137363,0.7597104],"study_design_scores_gemma":[0.000009860462,0.00001755074,0.00006911455,0.001184433,0.00003239331,0.0002470479,0.0000188196,0.0003729679,0.0008281954,0.005802156,0.9913952,0.00002230593],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007620311,0.7661347,0.1737449,0.009637841,0.003856635,0.0004358758,0.003670762,0.006124899,0.03563231],"genre_scores_gemma":[0.006171549,0.8472931,0.1162004,0.005010574,0.00133172,0.0006686088,0.01080352,0.001189868,0.01133069],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00984869,"threshold_uncertainty_score":0.03294712,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2211041313","doi":"10.15252/msb.20156351","title":"Fundamentals of protein interaction network mapping","year":2015,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":305,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Discovery Centre; University Health Network; University of Toronto","funders":"Canada Foundation for Innovation; Ontario Genomics Institute; Ontario Genomics; Natural Sciences and Engineering Research Council of Canada; International Business Machines Corporation; Cystic Fibrosis Foundation; University Health Network; U.S. Department of Defense","keywords":"IBM; Library science; Sociology; Computer science","authors":[{"name":"Jamie Snider","is_ca":true},{"name":"Max Kotlyar","is_ca":true},{"name":"Punit Saraon","is_ca":true},{"name":"Zhong Yao","is_ca":true},{"name":"Igor Jurišica","is_ca":true},{"name":"Igor Štagljar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04150111530243461,"gpt":0.3155086554196244,"spread":0.2740075401171898,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001214593,0.001674406,0.00140877,0.004785381,0.0007115887,0.002167999,0.002102214,0.001159168,0.005821665],"category_scores_gemma":[0.002761786,0.0008347195,0.001070316,0.004864039,0.001632826,0.00355307,0.001425876,0.002155478,0.005501773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001510636,"about_ca_system_score_gemma":0.001557198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002828013,"about_ca_topic_score_gemma":0.001785832,"domain_scores_codex":[0.9992417,0.000142861,0.00006231116,0.0002010058,0.0003131638,0.00003895244],"domain_scores_gemma":[0.999041,0.0005175663,0.0001033817,0.00008206811,0.0002193998,0.00003659045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000259331,0.00006073539,0.0007704371,0.006891361,0.0001138933,0.0002744317,0.0001953014,0.01179945,0.00760742,0.223377,0.0319756,0.7169085],"study_design_scores_gemma":[0.00001236482,0.00004167876,0.001716102,0.001302735,0.00005910924,0.001741787,0.0001164089,0.02122789,0.006340306,0.2478788,0.7194642,0.00009862525],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.00216772,0.398691,0.5469912,0.003961905,0.0009526648,0.000358231,0.003169533,0.001865709,0.04184205],"genre_scores_gemma":[0.02840563,0.6575325,0.2954625,0.000916028,0.000959001,0.0009076535,0.003553858,0.0002582188,0.01200452],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.005821665,"threshold_uncertainty_score":0.01947546,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171911221","doi":"10.1038/msb.2011.52","title":"Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":298,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Office of Science; New York University Abu Dhabi; Biological and Environmental Research; Jane Coffin Childs Memorial Fund for Medical Research; York University; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Metabolic network; Chlamydomonas reinhardtii; Chlamydomonas; Computational biology; Systems biology; Model organism; Phototaxis; Metabolic flux analysis; Metabolomics; Metabolic engineering; Flux balance analysis; Organism; In silico; Bioinformatics; Metabolism; Genetics; Gene","authors":[{"name":"Roger L. Chang","is_ca":false},{"name":"Lila Ghamsari","is_ca":false},{"name":"Ani Manichaikul","is_ca":false},{"name":"Erik Hom","is_ca":false},{"name":"Balaji Santhanam","is_ca":false},{"name":"Weiqi Fu","is_ca":false},{"name":"Yun Shen","is_ca":false},{"name":"Tong Hao","is_ca":false},{"name":"Bernhard Ø. Palsson","is_ca":false},{"name":"Kourosh Salehi‐Ashtiani","is_ca":false},{"name":"Jason A. Papin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00796307899479025,"gpt":0.1996603022813012,"spread":0.191697223286511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505004,0.0003499967,0.0002015613,0.0003552233,0.0002677635,0.000427681,0.000298042,0.0002316628,0.0005212057],"category_scores_gemma":[0.0005087771,0.0001678823,0.0005841444,0.0003874109,0.0001475204,0.0003617373,0.0002473206,0.0003134804,0.0001186268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008394039,"about_ca_system_score_gemma":0.0008199368,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.017348,"about_ca_topic_score_gemma":0.01433305,"domain_scores_codex":[0.9999452,0.00001175414,0.000002989834,0.00001947093,0.00001137366,0.000009341063],"domain_scores_gemma":[0.9998659,0.00005562931,0.00001769087,0.00002517086,0.00002151816,0.00001411163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001499095,0.00004304781,0.01217347,0.00008610747,0.00006302257,0.0001345819,0.00006952439,0.8684858,0.09905896,0.005611104,0.0002307729,0.01389364],"study_design_scores_gemma":[0.000005690935,0.00002069202,0.004395932,0.000004081174,0.00001740451,0.00002787931,0.00002461225,0.9809654,0.01101513,0.002411969,0.001100908,0.00001033025],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8990343,0.000281003,0.09614555,0.0001556161,0.00001237344,0.00001434415,0.002399137,0.0004104658,0.001547119],"genre_scores_gemma":[0.9614936,0.000249347,0.03554535,0.000009409055,0.000001672356,0.0000152773,0.002292598,0.00003185046,0.0003608291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.017348,"threshold_uncertainty_score":0.03449404,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984675437","doi":"10.1038/msb.2012.68","title":"Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":298,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Tartu Ülikool","keywords":"Biology; Cancer; Gene; Somatic cell; Genetics; Mutation; Computational biology; Kinase; Genome; Cancer research; Cancer cell; Bioinformatics","authors":[{"name":"Jüri Reimand","is_ca":true},{"name":"Gary D. Bader","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007326216168163774,"gpt":0.2389969449827303,"spread":0.2316707288145665,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003856717,0.0002203883,0.0002572209,0.00128876,0.000206909,0.0003971345,0.0001713002,0.0002157944,0.0005923579],"category_scores_gemma":[0.0009374298,0.0001359676,0.0002842297,0.0007190339,0.000203637,0.0001743655,0.000268884,0.0001986901,0.000127203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002697424,"about_ca_system_score_gemma":0.0002650243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009539606,"about_ca_topic_score_gemma":0.002629416,"domain_scores_codex":[0.9998085,0.00003390884,0.00001907673,0.00007295227,0.00004324393,0.00002230912],"domain_scores_gemma":[0.9994847,0.0002622777,0.000135922,0.00004277276,0.00003601337,0.00003830756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0007025304,0.0001025383,0.6243384,0.0001614479,0.0003645345,0.0007318325,0.00009604915,0.01053263,0.301537,0.001023826,0.0004515331,0.05995765],"study_design_scores_gemma":[0.00004959549,0.000311832,0.8106856,0.000025232,0.0004347395,0.002205164,0.000179307,0.09283221,0.08766308,0.002798639,0.002777927,0.00003662069],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960465,0.0002594324,0.002721842,0.00002969305,0.000002795994,0.00001209314,0.0005523162,0.00009162314,0.0002836419],"genre_scores_gemma":[0.9954777,0.0001222533,0.003247065,0.00001707526,0.000002839215,0.000006499846,0.001003701,0.0000179499,0.0001048798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00128876,"threshold_uncertainty_score":0.002039671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2606209624","doi":"10.15252/msb.20177551","title":"Automated analysis of high‐content microscopy data with deep learning","year":2017,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":298,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Canada Foundation for Innovation; Connaught Fund; National Human Genome Research Institute; University of Toronto; Ontario Ministry of Research, Innovation and Science; Canadian Institute for Advanced Research","keywords":"Deep learning; Convolutional neural network; Artificial intelligence; High-content screening; Computer science; Microscopy; Pattern recognition (psychology); Machine learning; Biology; Artificial neural network; Cell; Pathology","authors":[{"name":"Oren Kraus","is_ca":true},{"name":"Ben T. Grys","is_ca":true},{"name":"Jimmy Ba","is_ca":true},{"name":"Yolanda Chong","is_ca":false},{"name":"Brendan J. Frey","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Brenda Andrews","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01719669599324931,"gpt":0.3037710955816098,"spread":0.2865743995883605,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001197819,0.001009328,0.0006985891,0.002424958,0.0004957103,0.001544994,0.001530844,0.0009291003,0.001984731],"category_scores_gemma":[0.003081721,0.0006371824,0.0008222234,0.001483721,0.000823343,0.002130926,0.001986632,0.001733586,0.001150981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001289447,"about_ca_system_score_gemma":0.00132102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002291417,"about_ca_topic_score_gemma":0.004878364,"domain_scores_codex":[0.9994229,0.00008928675,0.00003986127,0.0001448926,0.0002418111,0.00006122758],"domain_scores_gemma":[0.9976853,0.000813596,0.000283143,0.0006634936,0.0004562071,0.00009812455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003623948,0.0003843944,0.008362618,0.0005263246,0.0002764995,0.0003490016,0.0002197429,0.1520368,0.3929375,0.01083691,0.01447607,0.4192317],"study_design_scores_gemma":[0.00001117367,0.00002476031,0.003241292,0.00001729976,0.00001187538,0.00008506703,0.00004348451,0.9314559,0.04919056,0.01346499,0.002423423,0.00003014012],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.05292193,0.0002423014,0.9367085,0.0004683952,0.00004391009,0.00005406635,0.001450427,0.007193217,0.0009171941],"genre_scores_gemma":[0.2564507,0.0004560786,0.7373819,0.0002404234,0.00004384971,0.000160893,0.003637026,0.0005347254,0.001094404],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002424958,"threshold_uncertainty_score":0.009355605,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152223517","doi":"10.1038/msb.2008.31","title":"Colored extrinsic fluctuations and stochastic gene expression","year":2008,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":273,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"William Osler Health System; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Biology; Biological system; Statistical physics; Noise (video); Colors of noise; Feed forward; Gene regulatory network; Stochastic process; Negative feedback; Physics; Function (biology); Gene expression; Gene; Genetics; Computer science; Statistics; Mathematics; Quantum mechanics","authors":[{"name":"Vahid Shahrezaei","is_ca":true},{"name":"Julien F. Ollivier","is_ca":true},{"name":"Peter S. Swain","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00980371723301397,"gpt":0.2240315805111861,"spread":0.2142278632781722,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006208571,0.0003757924,0.0002426991,0.0002935278,0.0002421943,0.0006535234,0.0004054054,0.0003386886,0.0007862811],"category_scores_gemma":[0.003608186,0.0002107914,0.000219346,0.0002422984,0.0008727001,0.0008461472,0.0005202023,0.0004200836,0.0001071736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007616847,"about_ca_system_score_gemma":0.0004297124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001190944,"about_ca_topic_score_gemma":0.001279828,"domain_scores_codex":[0.9996756,0.0001048098,0.00001004235,0.00006234898,0.0001038017,0.00004336017],"domain_scores_gemma":[0.999007,0.0005641784,0.0001540928,0.0001073791,0.00009650588,0.00007087777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001082929,0.00004970439,0.005274423,0.00004651894,0.00002933119,0.000192081,0.0001487196,0.8035011,0.03950501,0.1403422,0.0002507467,0.01055178],"study_design_scores_gemma":[0.000005802915,0.00002035777,0.0009587493,0.000002679897,0.000006098431,0.00002941842,0.000008122,0.9723159,0.006271968,0.01998962,0.0003816479,0.000009638658],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.457121,0.0001729843,0.5351399,0.0002222802,0.00003652115,0.00002931183,0.000057732,0.0002844062,0.006935879],"genre_scores_gemma":[0.9849593,0.0001083976,0.01343212,0.00004964261,0.00001176702,0.00002435774,0.00002732468,0.0000262982,0.00136091],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001190944,"threshold_uncertainty_score":0.005526483,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116298046","doi":"10.1038/msb4100200","title":"A map of human cancer signaling","year":2007,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":269,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"National Cancer Institute","keywords":"Library science; China; Zhàng; Research council; Editorial board; Political science; Law; Computer science; Government (linguistics)","authors":[{"name":"Qinghua Cui","is_ca":true},{"name":"Yun Ma","is_ca":false},{"name":"María Jaramillo","is_ca":true},{"name":"Hamza Bari","is_ca":true},{"name":"Arif Awan","is_ca":true},{"name":"Song Yang","is_ca":false},{"name":"Simo Zhang","is_ca":false},{"name":"Lixue Liu","is_ca":false},{"name":"Lu Meng","is_ca":false},{"name":"Maureen D. O'Connor‐McCourt","is_ca":true},{"name":"Enrico O. Purisima","is_ca":true},{"name":"Edwin Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009292567902469975,"gpt":0.2703930611938711,"spread":0.2611004932914012,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001271008,0.0006908358,0.0002597955,0.003279457,0.0004468724,0.0005954301,0.0003130119,0.0003197147,0.005419752],"category_scores_gemma":[0.001080893,0.0001731831,0.0007364868,0.003459683,0.0002186837,0.0004495616,0.0003974779,0.000282161,0.00121903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001019763,"about_ca_system_score_gemma":0.001055904,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01101779,"about_ca_topic_score_gemma":0.009709985,"domain_scores_codex":[0.9997488,0.00003622466,0.00001421216,0.0001006917,0.00007109665,0.00002896629],"domain_scores_gemma":[0.9996138,0.0001325992,0.00006148676,0.00004020404,0.0001227888,0.00002913367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001526851,0.0002253437,0.07852617,0.007895826,0.0009719221,0.004666,0.002399646,0.235257,0.1260151,0.06215234,0.1058014,0.3745624],"study_design_scores_gemma":[0.0001509212,0.0003909279,0.2033507,0.0005365564,0.0005595863,0.003802984,0.0008845243,0.3013942,0.04761771,0.05802513,0.3831485,0.0001382007],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5355529,0.008873158,0.1256191,0.001237329,0.0001204949,0.0005496815,0.2773297,0.01007652,0.0406411],"genre_scores_gemma":[0.753615,0.003338246,0.07593253,0.0001645147,0.00005718511,0.0003640504,0.1603893,0.0003024299,0.005836804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01101779,"threshold_uncertainty_score":0.02190733,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166086677","doi":"10.1002/msb.134974","title":"The functional diversity of protein lysine methylation","year":2014,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":268,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lysine; Methylation; Biology; Acetylation; Histone; Biochemistry; Computational biology; Ubiquitin; Phosphorylation; Histone H3; Amino acid; Gene","authors":[{"name":"Sylvain Lanouette","is_ca":true},{"name":"V. Mongeon","is_ca":true},{"name":"Daniel Figeys","is_ca":true},{"name":"Jean‐François Couture","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02048329291659294,"gpt":0.2758916847699553,"spread":0.2554083918533624,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003016283,0.0005136519,0.0006254677,0.001068646,0.0001899755,0.0007585981,0.0005699095,0.0006606153,0.001196128],"category_scores_gemma":[0.0002699428,0.0002080179,0.0002769368,0.0009760951,0.0004477247,0.0008713553,0.0005350694,0.0007919676,0.001182458],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004552187,"about_ca_system_score_gemma":0.0004210542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004065562,"about_ca_topic_score_gemma":0.0005211229,"domain_scores_codex":[0.999863,0.00001573307,0.00001397597,0.00004593527,0.00004327117,0.00001812434],"domain_scores_gemma":[0.9999187,0.00002786714,0.00001467002,0.000006848905,0.00002085459,0.00001100073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001014769,0.00003066664,0.0005919198,0.00858016,0.00009464938,0.0004480794,0.0001197036,0.0007618361,0.06133039,0.01698814,0.007818523,0.9031345],"study_design_scores_gemma":[0.00001004407,0.000100558,0.001799578,0.0006557936,0.00006557389,0.00263629,0.00005938033,0.0002003641,0.03301722,0.005632063,0.9557959,0.00002724979],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002171307,0.9897886,0.001552874,0.0003790153,0.0001717179,0.000006949558,0.0001017576,0.00002660638,0.005801093],"genre_scores_gemma":[0.01877693,0.9762449,0.001135588,0.0002340063,0.0001349575,0.00001889442,0.000168623,0.000007147316,0.003279048],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001196128,"threshold_uncertainty_score":0.004001379,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043460027","doi":"10.1038/msb.2010.108","title":"A comprehensive map of the mTOR signaling network","year":2010,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":244,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"SBML; PI3K/AKT/mTOR pathway; Systems biology; Biology; Computational biology; Regulator; Computer science; Markup language; Signal transduction; Bioinformatics; XML; World Wide Web; Cell biology; Genetics","authors":[{"name":"Étienne Caron","is_ca":true},{"name":"Samik Ghosh","is_ca":false},{"name":"Yukiko Matsuoka","is_ca":false},{"name":"Dariel Ashton‐Beaucage","is_ca":true},{"name":"Marc Therrien","is_ca":true},{"name":"Sébastien Lemieux","is_ca":true},{"name":"Claude Perreault","is_ca":true},{"name":"Philippe P. Roux","is_ca":true},{"name":"Hiroaki Kitano","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01836920944959338,"gpt":0.2759722140853155,"spread":0.2576030046357221,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003262152,0.000952223,0.0009827646,0.00292786,0.0002669636,0.0009309775,0.000931426,0.0006659913,0.004257707],"category_scores_gemma":[0.000429513,0.000420121,0.0004198934,0.002618548,0.0004640301,0.001681052,0.0005114672,0.0009043821,0.00302527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00125465,"about_ca_system_score_gemma":0.00144719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002220182,"about_ca_topic_score_gemma":0.002719402,"domain_scores_codex":[0.9998422,0.00001955792,0.00001460967,0.00003407499,0.00007928538,0.00001027522],"domain_scores_gemma":[0.9998575,0.00004705166,0.00001847216,0.000007726472,0.0000556368,0.00001355685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007172814,0.00003781993,0.0001846545,0.01178254,0.00009858935,0.0004343164,0.0000903753,0.005586248,0.009440126,0.03924822,0.0380704,0.894955],"study_design_scores_gemma":[0.000007999213,0.00003024809,0.0004451023,0.000974027,0.00005660368,0.0008662812,0.00002587248,0.0009474796,0.002166499,0.009539097,0.9849169,0.00002397608],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001256793,0.9629548,0.01100415,0.001180648,0.0004656293,0.00004164985,0.000530022,0.0002458522,0.02232047],"genre_scores_gemma":[0.007186636,0.9724771,0.01384947,0.0004281295,0.0002530777,0.00005601801,0.000690068,0.00002368611,0.00503584],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004257707,"threshold_uncertainty_score":0.01424348,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162640412","doi":"10.1038/msb.2013.47","title":"Protein synthesis rate is the predominant regulator of protein expression during differentiation","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":237,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Biology; Proteome; Protein biosynthesis; Proteomics; Protein degradation; Gene expression; Protein expression; Cell biology; Systems biology; Regulator; Regulation of gene expression; Translation (biology); Transcription (linguistics); Transcription factor; Messenger RNA; Gene; Computational biology; Biochemistry","authors":[{"name":"Anders Riis Kristensen","is_ca":true},{"name":"Joerg Gsponer","is_ca":true},{"name":"Leonard J. Foster","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005759248320309556,"gpt":0.2209217339328098,"spread":0.2151624856125002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005990552,0.0003691069,0.0006290547,0.0005146507,0.0002108149,0.001010409,0.0003282943,0.0003802349,0.0009770311],"category_scores_gemma":[0.0009922968,0.0003458701,0.0003056708,0.00059482,0.000366945,0.000506578,0.0003128901,0.0006997999,0.0009545384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006697337,"about_ca_system_score_gemma":0.0003796917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009422249,"about_ca_topic_score_gemma":0.0006710373,"domain_scores_codex":[0.9993315,0.00006339391,0.00005347525,0.0002955887,0.0001985736,0.00005747648],"domain_scores_gemma":[0.9990029,0.0003275591,0.0002242564,0.0001047715,0.0002623583,0.00007818338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000108818,0.000007233989,0.003061875,0.00006661229,0.000008510735,0.000019475,0.00002476587,0.0001622277,0.992494,0.00007729468,0.0000420203,0.003927055],"study_design_scores_gemma":[0.000007438942,0.0001392094,0.112471,0.00002293746,0.00003850213,0.0002425081,0.00007666949,0.004235237,0.878732,0.0003225017,0.003685306,0.00002671157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9553853,0.01372337,0.02484447,0.0003421562,0.00008275743,0.00005385092,0.001962003,0.0003526627,0.003253428],"genre_scores_gemma":[0.9874579,0.003495312,0.005457094,0.00009036955,0.00002972601,0.00004448741,0.001015411,0.0001230567,0.002286648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001010409,"threshold_uncertainty_score":0.004859269,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2781028774","doi":"10.15252/msb.20177908","title":"A framework for exhaustively mapping functional missense variants","year":2017,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Institute of General Medical Sciences; Ontario Ministry of Research and Innovation; National Institutes of Health; Vetenskapsrådet; National Human Genome Research Institute; Canada Excellence Research Chairs, Government of Canada","keywords":"Biology; Missense mutation; Computational biology; Genetics; Evolutionary biology; Mutation; Gene","authors":[{"name":"Jochen Weile","is_ca":true},{"name":"Song Sun","is_ca":true},{"name":"Atina G. Coté","is_ca":true},{"name":"Jennifer J. Knapp","is_ca":true},{"name":"Marta Verby","is_ca":true},{"name":"Joseph Mellor","is_ca":true},{"name":"Yingzhou Wu","is_ca":true},{"name":"Carles Pons","is_ca":false},{"name":"Cassandra J. Wong","is_ca":true},{"name":"Natascha van Lieshout","is_ca":true},{"name":"Fan Yang","is_ca":true},{"name":"Murat Taşan","is_ca":true},{"name":"Guihong Tan","is_ca":true},{"name":"Shan Yang","is_ca":false},{"name":"Douglas M. Fowler","is_ca":false},{"name":"Robert L. Nussbaum","is_ca":false},{"name":"Jesse D. Bloom","is_ca":false},{"name":"Marc Vidal","is_ca":false},{"name":"David E. Hill","is_ca":false},{"name":"Patrick Aloy","is_ca":false},{"name":"Frederick P. Roth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04273901756357423,"gpt":0.2873157656361566,"spread":0.2445767480725824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005086975,0.001586711,0.001368032,0.002383437,0.0007817247,0.001347015,0.002279491,0.001047452,0.002063838],"category_scores_gemma":[0.0117641,0.0009231837,0.001732974,0.001374195,0.001240602,0.001194641,0.003018735,0.001905076,0.0008345855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008421667,"about_ca_system_score_gemma":0.002130944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003138374,"about_ca_topic_score_gemma":0.005012786,"domain_scores_codex":[0.9975713,0.0009449061,0.0001847086,0.0006428533,0.0005178108,0.0001384716],"domain_scores_gemma":[0.9957932,0.002410083,0.0003342149,0.0008614013,0.000468564,0.000132536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0007871923,0.000310499,0.019101,0.0007623478,0.0007116747,0.0008706318,0.0005424312,0.5141902,0.124786,0.09704988,0.004289125,0.2365991],"study_design_scores_gemma":[0.00009063687,0.0002775107,0.002230638,0.00007777353,0.0001297806,0.000464412,0.0001059962,0.8021181,0.03849421,0.1450144,0.01091136,0.00008515163],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01184126,0.0001364253,0.9841457,0.0001181669,0.00001085233,0.00006891797,0.0006994861,0.002288365,0.0006908587],"genre_scores_gemma":[0.1590265,0.0002140936,0.8365489,0.0001733292,0.00001836858,0.0003135166,0.00253547,0.0006390169,0.0005307176],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.005086975,"threshold_uncertainty_score":0.02690279,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171510167","doi":"10.1038/msb.2009.26","title":"An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell","year":2009,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":223,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; Genome Canada","keywords":"Chaperone (clinical); Co-chaperone; Saccharomyces cerevisiae; Biology; Protein folding; Hsp90; HSP60; Heat shock protein; Protein–protein interaction; Protein aggregation; Proteostasis; Cell biology; Yeast; Hsp70; Computational biology; Biochemistry; Gene","authors":[{"name":"Yunchen Gong","is_ca":true},{"name":"Yoshito Kakihara","is_ca":true},{"name":"Nevan J. Krogan","is_ca":true},{"name":"Jack Greenblatt","is_ca":true},{"name":"Andrew Emili","is_ca":true},{"name":"Zhaolei Zhang","is_ca":true},{"name":"Walid A. Houry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02395399573088779,"gpt":0.3210421435907917,"spread":0.2970881478599039,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001456313,0.0006412917,0.0004490068,0.00401435,0.000338574,0.0008072871,0.0003677079,0.0002433697,0.002170401],"category_scores_gemma":[0.0002135694,0.0002114623,0.0003933413,0.006129351,0.0002053872,0.0006433851,0.0004586149,0.0004835549,0.001701608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000563803,"about_ca_system_score_gemma":0.0004878411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004003477,"about_ca_topic_score_gemma":0.006418848,"domain_scores_codex":[0.9999176,0.00001232307,0.00001363943,0.00001912789,0.00002525141,0.00001210762],"domain_scores_gemma":[0.9998221,0.00002906868,0.00002522269,0.00003401103,0.00003385676,0.00005575354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0009986971,0.0001071624,0.01325169,0.005230558,0.0003438621,0.001753184,0.0004882859,0.007679197,0.4356075,0.008767961,0.04002628,0.4857457],"study_design_scores_gemma":[0.00003653218,0.000244219,0.1114015,0.000493439,0.0003980978,0.004456082,0.0003895009,0.005978798,0.03641647,0.01550093,0.8245873,0.00009714936],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.2864266,0.4309351,0.1001403,0.001993408,0.001582465,0.0002165494,0.1041375,0.01897085,0.05559736],"genre_scores_gemma":[0.372597,0.3403864,0.1573617,0.0007686861,0.0005100955,0.0001669909,0.102676,0.00127659,0.02425661],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00401435,"threshold_uncertainty_score":0.00796032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104413400","doi":"10.1038/msb.2011.34","title":"Economics of membrane occupancy and respiro‐fermentation","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Office of Science; Genome Canada; University of Toronto; U.S. Department of Energy","keywords":"Biology; Fermentation; Biochemistry; Oxidative phosphorylation; Cellular respiration; Bacteria; Respiratory chain; Cell biology; Biophysics; Mitochondrion; Genetics","authors":[{"name":"Kai Zhuang","is_ca":true},{"name":"Goutham N. Vemuri","is_ca":false},{"name":"Radhakrishnan Mahadevan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01232334387867591,"gpt":0.2127733056237023,"spread":0.2004499617450264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003363501,0.0002855225,0.0004404935,0.0001772202,0.0003722117,0.001265066,0.0005186704,0.000568217,0.001731503],"category_scores_gemma":[0.001641163,0.0002744602,0.0003404423,0.0002872118,0.0007961789,0.001044817,0.000763412,0.0004482338,0.0001450707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001688566,"about_ca_system_score_gemma":0.000730145,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003550703,"about_ca_topic_score_gemma":0.002325447,"domain_scores_codex":[0.9998086,0.00004946909,0.000009120307,0.00002827565,0.00003670696,0.00006781546],"domain_scores_gemma":[0.9995064,0.0002273819,0.000108949,0.00003834553,0.00004466454,0.00007435566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004290529,0.00007435273,0.01020392,0.00009371105,0.00004197834,0.000348113,0.00006087296,0.8794731,0.05731717,0.0480785,0.0003392621,0.003539996],"study_design_scores_gemma":[0.00005843908,0.0001221346,0.006297237,0.00001207779,0.00002715589,0.00009263107,0.0001459773,0.9674034,0.01206484,0.01270415,0.001026269,0.00004583385],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9825044,0.0001776003,0.01228793,0.0004109943,0.00001643164,0.00001349288,0.0001230534,0.00002607676,0.00444],"genre_scores_gemma":[0.99879,0.00007120053,0.0007296422,0.0000138472,0.000001575035,0.00001157255,0.00002219417,0.000007156613,0.0003527619],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003550703,"threshold_uncertainty_score":0.0122515,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151178734","doi":"10.1038/msb.2011.80","title":"Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":194,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Fondation Chalmers; SystemsX.ch; Knut och Alice Wallenbergs Stiftelse","keywords":"Biology; Saccharomyces cerevisiae; Biochemistry; Metabolism; Assimilation (phonology); Peroxisome; Cell biology; Yeast; Gene","authors":[{"name":"Jie Zhang","is_ca":false},{"name":"Stefania Vaga","is_ca":false},{"name":"Pramote Chumnanpuen","is_ca":false},{"name":"Rahul Kumar","is_ca":false},{"name":"Goutham N. Vemuri","is_ca":false},{"name":"Ruedi Aebersold","is_ca":false},{"name":"Jens Nielsen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03642573966188735,"gpt":0.2654049567511497,"spread":0.2289792170892623,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001784628,0.0003810367,0.0002460041,0.000414749,0.0003054651,0.0004271299,0.0003670498,0.0003636183,0.0006152373],"category_scores_gemma":[0.0002363746,0.0003297891,0.0003688972,0.0003239404,0.0002171938,0.0001468194,0.0002867483,0.0003284721,0.0005185899],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001125951,"about_ca_system_score_gemma":0.000296647,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007166058,"about_ca_topic_score_gemma":0.008028892,"domain_scores_codex":[0.9998412,0.00002752551,0.00001614411,0.00004580802,0.00004580348,0.00002351478],"domain_scores_gemma":[0.9998655,0.00003107349,0.00004545429,0.0000148864,0.00001632709,0.00002674494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002866643,0.00002235607,0.002320613,0.00006560158,0.00002737363,0.0001127175,0.0000345851,0.0006362356,0.9940377,0.0001902324,0.00008346291,0.002182383],"study_design_scores_gemma":[0.00002634675,0.0001386566,0.03882585,0.00001958469,0.00005772655,0.0004572169,0.0001331294,0.00956424,0.9446768,0.0001832172,0.005890652,0.00002653379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933242,0.00188583,0.003140079,0.00006981007,0.00001543239,0.00001585373,0.0007513787,0.00005355184,0.0007439862],"genre_scores_gemma":[0.9934282,0.0005802453,0.003306685,0.00005958678,0.000003013036,0.00001867454,0.001330035,0.00003582461,0.00123777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007166058,"threshold_uncertainty_score":0.01424867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099291727","doi":"10.15252/msb.20145307","title":"Modeling cancer metabolism on a genome scale","year":2015,"lang":"en","type":"review","venue":"Molecular Systems Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Planning and Budgeting Committee of the Council for Higher Education of Israel; Israel Cancer Research Fund; Israeli Centers for Research Excellence; Azrieli Foundation; Israel Science Foundation; Cancer Research UK","keywords":"Tel aviv; Library science; Sociology; Computer science","authors":[{"name":"Keren Yizhak","is_ca":false},{"name":"Barbara Chaneton","is_ca":false},{"name":"Eyal Gottlieb","is_ca":false},{"name":"Eytan Ruppin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03134162642479001,"gpt":0.3132081402940832,"spread":0.2818665138692932,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000246609,0.0008201365,0.001039381,0.0005125751,0.0002269025,0.0009590718,0.00117091,0.001238636,0.001712239],"category_scores_gemma":[0.0004424207,0.0003977064,0.001025453,0.0008573993,0.0004338287,0.00105184,0.0006935149,0.0009673932,0.0007422313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001063681,"about_ca_system_score_gemma":0.0008395787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005954274,"about_ca_topic_score_gemma":0.005141033,"domain_scores_codex":[0.9999266,0.00002392397,0.000004343047,0.00001985672,0.00001837851,0.000006981553],"domain_scores_gemma":[0.9998969,0.00005559544,0.00001129682,0.000008042257,0.0000196353,0.000008457682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00004908968,0.00003534536,0.001756641,0.003095403,0.000411295,0.0003909879,0.0001046823,0.6747123,0.010517,0.1242911,0.01080085,0.1738353],"study_design_scores_gemma":[0.00002589942,0.00006097922,0.001721206,0.0005742167,0.0002269062,0.0006421407,0.0001109274,0.534775,0.004103297,0.1311252,0.32656,0.00007412375],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02053678,0.5183008,0.4215184,0.006397764,0.001068657,0.00006833294,0.001749167,0.0009543351,0.02940578],"genre_scores_gemma":[0.1832302,0.7057481,0.09767351,0.0008596696,0.0006817696,0.0002261775,0.002330715,0.000228685,0.009021108],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005954274,"threshold_uncertainty_score":0.01183921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116536284","doi":"10.1038/msb.2011.31","title":"Cross‐species discovery of syncretic drug combinations that potentiate the antifungal fluconazole","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":185,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Fluconazole; Biology; Antifungal; Antifungal drug; Drug; Drug discovery; Computational biology; Antifungal drugs; Pharmacology; Microbiology; Bioinformatics","authors":[{"name":"Michaela Spitzer","is_ca":false},{"name":"Emma Griffiths","is_ca":true},{"name":"Kim M. Blakely","is_ca":true},{"name":"Jan Wildenhain","is_ca":false},{"name":"Linda Ejim","is_ca":true},{"name":"Laura Rossi","is_ca":true},{"name":"Gianfranco De Pascale","is_ca":true},{"name":"Jasna Ćurak","is_ca":true},{"name":"Eric D. Brown","is_ca":true},{"name":"Mike Tyers","is_ca":false},{"name":"Gerard D. Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03067217706620692,"gpt":0.2708982046889418,"spread":0.2402260276227349,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002557954,0.0004423359,0.000551778,0.000645183,0.0001950507,0.0004668325,0.0002712792,0.0002691682,0.001501311],"category_scores_gemma":[0.0002732046,0.0002425446,0.0002730107,0.0003904749,0.0001650406,0.0002485875,0.0004350929,0.0003238404,0.0002898622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003618992,"about_ca_system_score_gemma":0.0002249734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002444602,"about_ca_topic_score_gemma":0.001011078,"domain_scores_codex":[0.9998201,0.0000371675,0.0000156307,0.00003592075,0.00005411388,0.00003713384],"domain_scores_gemma":[0.9999067,0.00001802732,0.00002661111,0.00001192531,0.0000167096,0.00002016759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003131776,0.0002342994,0.0007701401,0.00009797229,0.00005620418,0.0001854145,0.00002663703,0.001569096,0.9695574,0.0003513644,0.0001991183,0.02663918],"study_design_scores_gemma":[0.000118431,0.00326269,0.004089905,0.0000208006,0.0002162944,0.0008980976,0.0000459408,0.003453912,0.9793632,0.0002460508,0.00826673,0.00001795602],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889112,0.002197449,0.003477867,0.0001571357,0.0000275554,0.0001283457,0.0003592396,0.0001503958,0.004590809],"genre_scores_gemma":[0.9933134,0.001769472,0.003270404,0.00009263377,0.00001096521,0.0000482686,0.000464517,0.00001840932,0.001011786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001501311,"threshold_uncertainty_score":0.005022407,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121581360","doi":"10.15252/msb.20145949","title":"Growth‐dependent bacterial susceptibility to ribosome‐targeting antibiotics","year":2015,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":178,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Engineering and Physical Sciences Research Council; Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst","keywords":"Biology; Antibiotics; Translation (biology); Ribosome; Escherichia coli; Pathogen; Drug development; Bacterial growth; Computational biology; Limiting; Microbiology; Drug; Genetics; Bacteria; Gene; RNA; Pharmacology; Messenger RNA","authors":[{"name":"Philip Greulich","is_ca":false},{"name":"Matthew P. Scott","is_ca":true},{"name":"M. R. Evans","is_ca":false},{"name":"Rosalind J. Allen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01405860655185686,"gpt":0.2532710230125228,"spread":0.2392124164606659,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004851074,0.0004093501,0.0006185683,0.0004242449,0.0002639111,0.001047524,0.0003785787,0.0006070666,0.0005950496],"category_scores_gemma":[0.001842247,0.0001689995,0.0003570142,0.0002422966,0.0009733068,0.00083107,0.0006032104,0.0004503036,0.0001464876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008146317,"about_ca_system_score_gemma":0.0004004278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001646892,"about_ca_topic_score_gemma":0.000919605,"domain_scores_codex":[0.9997079,0.00007312218,0.00002001186,0.00006708252,0.00005630799,0.00007560957],"domain_scores_gemma":[0.9991447,0.0003986452,0.0002174529,0.0001249863,0.00005552004,0.00005870957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00029593,0.000171788,0.01445082,0.0002048586,0.00005816446,0.0002116524,0.0001451303,0.6062759,0.3205743,0.04558551,0.0004765123,0.01154934],"study_design_scores_gemma":[0.00001505404,0.0001114838,0.00740785,0.00001497173,0.00002101217,0.00006371801,0.0000582071,0.9389436,0.02980654,0.0230815,0.0004320837,0.00004398272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9709162,0.0003217307,0.02457945,0.00029846,0.0000157812,0.0000156987,0.0001006813,0.0001245356,0.003627484],"genre_scores_gemma":[0.9986284,0.0001342099,0.0008957401,0.00001685193,0.000002652877,0.00001076011,0.00002624863,0.000007478099,0.0002777488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001646892,"threshold_uncertainty_score":0.005910575,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141440692","doi":"10.1038/msb.2010.114","title":"A stele‐enriched gene regulatory network in the Arabidopsis root","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Natural Sciences and Engineering Research Council of Canada; Leverhulme Trust; Agricultural Research Service; National Institute of General Medical Sciences; Royal Society; National Institutes of Health; National Science Foundation","keywords":"Biology; Gene regulatory network; Arabidopsis; Regulation of gene expression; microRNA; Multicellular organism; Gene; Gene expression; Genetics; Transcription factor; Phenotype; Computational biology; Promoter; Regulatory sequence; Regulator gene; Cell biology","authors":[{"name":"Siobhán M. Brady","is_ca":false},{"name":"Lifang Zhang","is_ca":false},{"name":"Molly Megraw","is_ca":false},{"name":"Natalia J. Martinez","is_ca":false},{"name":"Eric Y. Jiang","is_ca":false},{"name":"Charles Sunghoon Yi","is_ca":false},{"name":"Weilin Liu","is_ca":false},{"name":"Anna Zeng","is_ca":false},{"name":"Mallorie Taylor‐Teeples","is_ca":false},{"name":"Dahae Kim","is_ca":false},{"name":"Sebastian E. Ahnert","is_ca":false},{"name":"Uwe Ohler","is_ca":false},{"name":"Doreen Ware","is_ca":false},{"name":"Albertha J.M. Walhout","is_ca":false},{"name":"Philip N. Benfey","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03172986501268122,"gpt":0.2286225435185732,"spread":0.196892678505892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007348285,0.0001358683,0.0002465815,0.0002821175,0.0001353555,0.0001605232,0.0001074416,0.0001099659,0.0006712257],"category_scores_gemma":[0.0001195907,0.0001417894,0.0001388434,0.0001422452,0.0001947888,0.0001331666,0.0001721551,0.0002143712,0.0003903835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001833507,"about_ca_system_score_gemma":0.0001733202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006278167,"about_ca_topic_score_gemma":0.001385063,"domain_scores_codex":[0.9999067,0.00000713624,0.000003951528,0.00004931746,0.0000188436,0.0000141125],"domain_scores_gemma":[0.9998672,0.00002441502,0.00004256155,0.00001614364,0.00002043127,0.00002925405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004601257,0.000003153899,0.0006181853,0.00001270623,0.000002472061,0.00004579281,0.000009660002,0.0001028351,0.9980175,0.0001309451,0.00001714728,0.0009935426],"study_design_scores_gemma":[0.00007161839,0.0003901716,0.250091,0.00001937705,0.00005864855,0.001842237,0.00009744143,0.0120697,0.7279786,0.002004633,0.005342785,0.00003371611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916955,0.0004527628,0.005871699,0.00005084501,0.000004008896,0.00001091404,0.0004447283,0.0001811294,0.001288519],"genre_scores_gemma":[0.9921802,0.0001424353,0.004298212,0.00004823069,0.000003896478,0.00001940186,0.001088334,0.0000317004,0.002187559],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006712257,"threshold_uncertainty_score":0.002245486,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2158900785","doi":"10.1038/msb.2012.9","title":"Single‐cell analysis of population context advances RNAi screening at multiple levels","year":2012,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":173,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"SystemsX.ch; Canadian Institutes of Health Research; Eidgenössische Technische Hochschule Zürich; National Center of Competence in Research Chemical Biology; Universität Zürich; European Commission; Federation of European Biochemical Societies; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Context (archaeology); RNA interference; Computational biology; Population; Genetics; Gene; RNA; Environmental health","authors":[{"name":"Berend Snijder","is_ca":false},{"name":"Raphael Sacher","is_ca":false},{"name":"Pauli Rämö","is_ca":false},{"name":"Prisca Liberali","is_ca":false},{"name":"Karin Mench","is_ca":false},{"name":"Nina Wolfrum","is_ca":false},{"name":"Laura Burleigh","is_ca":false},{"name":"Cameron C. Scott","is_ca":false},{"name":"Monique H. Verheije","is_ca":false},{"name":"Jason Mercer","is_ca":false},{"name":"Stefan Moese","is_ca":false},{"name":"Thomas Heger","is_ca":false},{"name":"Kristina Theusner","is_ca":false},{"name":"Andreas Jurgeit","is_ca":false},{"name":"David Lamparter","is_ca":false},{"name":"Giuseppe Balistreri","is_ca":false},{"name":"Mario Schelhaas","is_ca":false},{"name":"Cornelis A. M. de Haan","is_ca":false},{"name":"Varpu Marjomäki","is_ca":false},{"name":"Timo Hyypiä","is_ca":false},{"name":"Peter J. M. Rottier","is_ca":false},{"name":"Beate Sodeik","is_ca":false},{"name":"Mark Marsh","is_ca":false},{"name":"Jean Grüenberg","is_ca":false},{"name":"Ali Amara","is_ca":false},{"name":"Urs F. Greber","is_ca":false},{"name":"Ari Helenius","is_ca":false},{"name":"Lucas Pelkmans","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02443840797709173,"gpt":0.2666735016356013,"spread":0.2422350936585096,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006959633,0.0003840331,0.0007473757,0.0003227724,0.0002194558,0.000677467,0.0004831791,0.0003818801,0.0005679092],"category_scores_gemma":[0.001389141,0.0003251812,0.0005285738,0.0003230818,0.0004212823,0.0004066138,0.0006035017,0.0008236141,0.0001556721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006043387,"about_ca_system_score_gemma":0.0004843585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001933469,"about_ca_topic_score_gemma":0.00308202,"domain_scores_codex":[0.9996248,0.00007094013,0.0000186348,0.000112433,0.0001467861,0.00002640927],"domain_scores_gemma":[0.9989921,0.0005381022,0.0001778608,0.0001494204,0.00009201311,0.00005031484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001246226,0.00004886258,0.01456965,0.0001255919,0.0001549053,0.000114203,0.0000730302,0.0626495,0.9017426,0.002450438,0.0001137188,0.01783295],"study_design_scores_gemma":[0.00002068626,0.0001577959,0.06176462,0.00001100362,0.0001760842,0.000154731,0.00006678435,0.517716,0.4142698,0.004136629,0.001461313,0.00006451243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7285798,0.0004376268,0.2687489,0.00008734139,0.00001148106,0.00003664045,0.0003616314,0.0004205047,0.001316075],"genre_scores_gemma":[0.9576629,0.0002207796,0.04136035,0.00003255447,0.000005351458,0.00005987336,0.0002972499,0.00007356224,0.000287308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001933469,"threshold_uncertainty_score":0.004384756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120187999","doi":"10.1038/msb.2010.11","title":"Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Toronto; Eidgenössische Technische Hochschule Zürich; Austrian Science Fund","keywords":"Metabolite; Enzyme; Biology; Biochemistry; Metabolic pathway; Enzyme kinetics; Metabolomics; Saccharomyces cerevisiae; Metabolome; Enzyme assay; Bioinformatics; Active site; Yeast","authors":[{"name":"Sarah‐Maria Fendt","is_ca":false},{"name":"Joerg M. Buescher","is_ca":false},{"name":"Florian Rudroff","is_ca":false},{"name":"Paola Picotti","is_ca":false},{"name":"Nicola Zamboni","is_ca":false},{"name":"Uwe Sauer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009101535682525662,"gpt":0.2266144460694126,"spread":0.2175129103868869,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008087815,0.0005611767,0.0007299042,0.0003580477,0.0001836866,0.00155231,0.0006345218,0.0004988713,0.0005089338],"category_scores_gemma":[0.001638573,0.0003894849,0.0002477409,0.0003650593,0.0008247941,0.00197751,0.0007633363,0.0005140481,0.0002634789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006808466,"about_ca_system_score_gemma":0.0003754434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003327026,"about_ca_topic_score_gemma":0.0003740915,"domain_scores_codex":[0.9993988,0.0001009436,0.00005913081,0.000221494,0.0001189369,0.0001007361],"domain_scores_gemma":[0.9985023,0.0003883024,0.0004166179,0.0003354816,0.0001863618,0.0001709364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001751865,0.00001889481,0.003326754,0.00004634457,0.00001878025,0.0000480377,0.00002791335,0.001541556,0.9902375,0.0009673035,0.00002062745,0.003571151],"study_design_scores_gemma":[0.00001999333,0.0003091929,0.02031877,0.00001329937,0.00004834405,0.0002164057,0.0001224053,0.01543772,0.9598771,0.002585611,0.001013687,0.00003757462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9767601,0.0009954906,0.02045721,0.000305329,0.00001613625,0.00001282822,0.0001465689,0.0001906379,0.001115772],"genre_scores_gemma":[0.9975803,0.0001923645,0.001834482,0.00003487338,0.000005694769,0.00001002436,0.00007047304,0.00002065592,0.0002510603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00155231,"threshold_uncertainty_score":0.004939914,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134874840","doi":"10.1038/msb.2009.37","title":"Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology","year":2009,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":166,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Ontario Institute for Cancer Research; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Human Pathology; Systems biology; Computational biology; Human biology; Pathology; Bioinformatics; Disease; Genetics","authors":[{"name":"Brian Cox","is_ca":true},{"name":"Max Kotlyar","is_ca":true},{"name":"Andreas Evangelou","is_ca":true},{"name":"Vladimir Ignatchenko","is_ca":true},{"name":"Alexandr Ignatchenko","is_ca":true},{"name":"Kathie J. Whiteley","is_ca":true},{"name":"Igor Jurišica","is_ca":true},{"name":"S. Lee Adamson","is_ca":true},{"name":"Janet Rossant","is_ca":true},{"name":"Thomas Kislinger","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03714901456031537,"gpt":0.33708871427193,"spread":0.2999396997116147,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00355791,0.001290698,0.001007685,0.002807283,0.0007554387,0.001778428,0.001775433,0.000906967,0.01021478],"category_scores_gemma":[0.002606648,0.0008176986,0.0010014,0.001593811,0.001319487,0.001100792,0.001797693,0.002611398,0.002226362],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006721302,"about_ca_system_score_gemma":0.0008992857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001588759,"about_ca_topic_score_gemma":0.002025373,"domain_scores_codex":[0.9988073,0.0006995907,0.0001067989,0.0001457889,0.0001861661,0.00005424463],"domain_scores_gemma":[0.9988639,0.000575767,0.0001248584,0.0002819762,0.00009312449,0.00006030595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00102496,0.0004981829,0.004740478,0.002090178,0.0005957864,0.00182654,0.001586645,0.04257673,0.2731543,0.4551193,0.0419832,0.1748038],"study_design_scores_gemma":[0.0002756451,0.001530803,0.008181249,0.0005714006,0.0004364073,0.002619504,0.0003444329,0.0768256,0.05463704,0.09772182,0.7566953,0.0001608034],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.01851178,0.003632693,0.9443918,0.001100564,0.0006281578,0.0004359582,0.004861474,0.00639877,0.02003882],"genre_scores_gemma":[0.0745955,0.003600067,0.9047713,0.0004384968,0.0001154788,0.002913742,0.004766698,0.00183352,0.006965126],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01021478,"threshold_uncertainty_score":0.03417182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105597591","doi":"10.1038/msb.2013.12","title":"Construction of human activity‐based phosphorylation networks","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Center for Research Resources; National Institute of General Medical Sciences; Wellcome Trust; National Eye Institute; National Human Genome Research Institute; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health","keywords":"Phosphorylation; Biology; Kinase; Substrate-level phosphorylation; Cell biology; Signal transduction; Protein-Serine-Threonine Kinases; Protein phosphorylation; Receptor tyrosine kinase; Computational biology; Biochemistry; Protein kinase A","authors":[{"name":"Robert H. Newman","is_ca":false},{"name":"Jianfei Hu","is_ca":false},{"name":"Hee‐Sool Rho","is_ca":false},{"name":"Zhi Xie","is_ca":false},{"name":"Crystal Woodard","is_ca":false},{"name":"John Neiswinger","is_ca":false},{"name":"Christopher L. Cooper","is_ca":false},{"name":"Matthew D. Shirley","is_ca":false},{"name":"Hillary M Clark","is_ca":false},{"name":"Shaohui Hu","is_ca":false},{"name":"Woochang Hwang","is_ca":false},{"name":"Jun Seop Jeong","is_ca":false},{"name":"George Y. Wu","is_ca":false},{"name":"Jimmy Lin","is_ca":false},{"name":"Xinxin Gao","is_ca":false},{"name":"Qiang Ni","is_ca":false},{"name":"Renu Goel","is_ca":false},{"name":"Shuli Xia","is_ca":false},{"name":"Hongkai Ji","is_ca":false},{"name":"Kevin N. Dalby","is_ca":false},{"name":"Morris J. Birnbaum","is_ca":false},{"name":"Philip A. Cole","is_ca":false},{"name":"Stefan Knapp","is_ca":false},{"name":"Alexey G. Ryazanov","is_ca":false},{"name":"Donald J. Zack","is_ca":false},{"name":"Seth Blackshaw","is_ca":false},{"name":"Tony Pawson","is_ca":true},{"name":"Anne‐Claude Gingras","is_ca":true},{"name":"Stephen Desiderio","is_ca":false},{"name":"Akhilesh Pandey","is_ca":false},{"name":"Benjamin E. Turk","is_ca":false},{"name":"Jin Zhang","is_ca":false},{"name":"Heng Zhu","is_ca":false},{"name":"Jiang Qian","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007454844100459899,"gpt":0.2609211848305033,"spread":0.2534663407300434,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001878039,0.0004192587,0.0002759455,0.0009974403,0.0002504225,0.0005468446,0.0003107459,0.0002226082,0.003652464],"category_scores_gemma":[0.0007831962,0.0002898982,0.0006288334,0.0009470125,0.0002541787,0.0003475482,0.0004289723,0.0003557849,0.0007330229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004717982,"about_ca_system_score_gemma":0.0004647299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002517971,"about_ca_topic_score_gemma":0.002444903,"domain_scores_codex":[0.9997832,0.00004948124,0.00001065807,0.0000916078,0.00004084599,0.00002418229],"domain_scores_gemma":[0.9998176,0.00007989092,0.0000228036,0.00003446147,0.00003020599,0.00001524879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009031831,0.0001832203,0.01840127,0.0004885263,0.0002191372,0.0009786888,0.0005509547,0.5150344,0.1305284,0.08456081,0.008715562,0.2394359],"study_design_scores_gemma":[0.00005859503,0.0001338377,0.0138569,0.00004995521,0.00007592051,0.0005413493,0.0001927001,0.8241802,0.04614721,0.06892388,0.04580295,0.00003636624],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3110639,0.0005965448,0.6482849,0.0003169267,0.00003530941,0.0002967502,0.01789404,0.002671479,0.01884018],"genre_scores_gemma":[0.6916799,0.001034963,0.2697644,0.0000749532,0.00002659608,0.0004425305,0.03214456,0.0001807004,0.004651431],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003652464,"threshold_uncertainty_score":0.01221865,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164963523","doi":"10.1038/msb.2009.85","title":"Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4‐2 using proteome arrays","year":2009,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research; Canada Research Chairs","keywords":"NEDD4; Ubiquitin; Ubiquitin ligase; Biology; Ubiquitin-Protein Ligases; Cell biology; WW domain; Biochemistry; Gene","authors":[{"name":"Avinash K. Persaud","is_ca":true},{"name":"Eva Amsen","is_ca":true},{"name":"Xuejian Xiong","is_ca":true},{"name":"James D. Wasmuth","is_ca":true},{"name":"Zachary Saadon","is_ca":true},{"name":"Chris Fladd","is_ca":true},{"name":"John Parkinson","is_ca":true},{"name":"Daniela Rotin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03285872586865448,"gpt":0.2994119007075522,"spread":0.2665531748388977,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003631766,0.0003973191,0.0004342046,0.0005713152,0.0001726267,0.0005316754,0.0003400605,0.0004076017,0.0008683479],"category_scores_gemma":[0.0003370995,0.0003091932,0.0002968257,0.0004514115,0.0001486595,0.0003206408,0.0001888277,0.0003152848,0.0004102309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004309057,"about_ca_system_score_gemma":0.0001134218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003337093,"about_ca_topic_score_gemma":0.000577413,"domain_scores_codex":[0.9995229,0.00009469376,0.00004424785,0.0001194043,0.0001467803,0.00007196697],"domain_scores_gemma":[0.9998276,0.00005333979,0.00003267613,0.00001529546,0.00004123919,0.00002976376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001409773,0.00001419069,0.0003947404,0.00003197387,0.00001403949,0.00001157239,0.000007281696,0.0001189834,0.9979566,0.00005521429,0.00002359195,0.001230786],"study_design_scores_gemma":[0.0000105553,0.0001227532,0.007068426,0.000002937794,0.00002423461,0.0001618448,0.00001626316,0.003546286,0.987702,0.0000591729,0.001276832,0.000008643802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9826443,0.001885321,0.01290354,0.00007017244,0.00002484494,0.00002090474,0.0007208652,0.0001000834,0.00163008],"genre_scores_gemma":[0.963439,0.001725564,0.02792549,0.00009828121,0.00001613385,0.0001060082,0.003441558,0.00004234769,0.003205556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008683479,"threshold_uncertainty_score":0.003126502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105247266","doi":"10.1038/msb4100159","title":"Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast","year":2007,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Hospital for Sick Children","keywords":"Biology; Identification (biology); Yeast; Computational biology; DNA microarray; Saccharomyces cerevisiae; Protein microarray; Proteomics; Protein Array Analysis; Genetics; Bioinformatics; Gene; Gene expression; Ecology","authors":[{"name":"Ronish Gupta","is_ca":true},{"name":"Bart Kus","is_ca":true},{"name":"Christopher Fladd","is_ca":true},{"name":"James D. Wasmuth","is_ca":true},{"name":"Raffi Tonikian","is_ca":true},{"name":"Sachdev S. Sidhu","is_ca":false},{"name":"Nevan J. Krogan","is_ca":false},{"name":"John Parkinson","is_ca":true},{"name":"Daniela Rotin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03094897998256246,"gpt":0.2992082674405601,"spread":0.2682592874579976,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002917183,0.0006100391,0.0005517619,0.0003434277,0.0002507582,0.0003341202,0.000253677,0.0003127002,0.0006992732],"category_scores_gemma":[0.0001635648,0.0002087877,0.0003931741,0.000351852,0.0001152148,0.0002007751,0.0003255739,0.0003060892,0.0004058099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003044873,"about_ca_system_score_gemma":0.0001441705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004260838,"about_ca_topic_score_gemma":0.0009059254,"domain_scores_codex":[0.9996387,0.00007075004,0.00002582602,0.00008054658,0.0001395882,0.00004465427],"domain_scores_gemma":[0.9998848,0.00003256835,0.00002367928,0.00001599137,0.00002369297,0.00001912868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002772739,0.00001187885,0.0002082998,0.00001616439,0.000008213878,0.00002828829,0.000005318751,0.00004790681,0.9989343,0.00002292411,0.00002215234,0.0006667082],"study_design_scores_gemma":[0.000004031662,0.0001545165,0.003027995,0.000002353218,0.00002219323,0.0001560572,0.00001923841,0.0009686992,0.9944799,0.00002729694,0.00113335,0.000004433476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9532153,0.001725672,0.04132012,0.0001600408,0.00003668402,0.0001199928,0.00156432,0.0003898942,0.001467992],"genre_scores_gemma":[0.9531567,0.00140246,0.03909281,0.0001241136,0.00001163491,0.0001597729,0.003211622,0.00004720177,0.002793755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006992732,"threshold_uncertainty_score":0.002339303,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2739391656","doi":"10.15252/msb.20167412","title":"Capturing protein communities by structural proteomics in a thermophilic eukaryote","year":2017,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"KU Leuven; Universität Heidelberg; Wellcome Trust; Wellcome","keywords":"Eukaryote; Structural biology; Biology; Molecular cell biology; Library science; Cell and molecular biology; Computational biology; Computer science; Genetics; Gene; Plant development; Cell biology","authors":[{"name":"Panagiotis L. Kastritis","is_ca":false},{"name":"Francis J. O’Reilly","is_ca":false},{"name":"Thomas Bock","is_ca":false},{"name":"Yuanyue Li","is_ca":false},{"name":"Zbigniew Rogon","is_ca":false},{"name":"Katarzyna Buczak","is_ca":false},{"name":"Natalie Romanov","is_ca":false},{"name":"Matthew J. Betts","is_ca":false},{"name":"Wim J. H. Hagen","is_ca":false},{"name":"Marco L. Hennrich","is_ca":false},{"name":"Marie‐Therese Mackmull","is_ca":false},{"name":"Juri Rappsilber","is_ca":false},{"name":"Robert B. Russell","is_ca":false},{"name":"Peer Bork","is_ca":false},{"name":"Martin Beck","is_ca":false},{"name":"Anne‐Claude Gavin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01164289055199484,"gpt":0.2452265013018487,"spread":0.2335836107498539,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000129205,0.0002000341,0.0001826543,0.0003271461,0.0002486953,0.0003635452,0.0001842381,0.0003496199,0.0002678725],"category_scores_gemma":[0.0002271358,0.0001626432,0.0001451792,0.0002509331,0.0002233231,0.0002961671,0.0002710683,0.0002962391,0.0001651549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001947147,"about_ca_system_score_gemma":0.0001377818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008389585,"about_ca_topic_score_gemma":0.001462494,"domain_scores_codex":[0.9999484,0.000007420995,0.000003551062,0.00001559841,0.00001538158,0.000009694561],"domain_scores_gemma":[0.9998935,0.0000262068,0.0000224749,0.00001575959,0.00002150862,0.00002049269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001693496,0.000003413533,0.0007210764,0.00001279702,0.000002728829,0.00002072223,0.00001462397,0.00006806854,0.9987497,0.00003464543,0.000006659565,0.0003485722],"study_design_scores_gemma":[0.00001018388,0.0001694254,0.08231266,0.00001532082,0.00002953019,0.00071054,0.0003105588,0.01151942,0.902674,0.000497205,0.001733638,0.00001748125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902677,0.0002418007,0.008723227,0.00007075496,0.000005656514,0.00001078192,0.0003251337,0.00003951888,0.0003154762],"genre_scores_gemma":[0.9867714,0.000304127,0.01187041,0.00005971797,0.000006263736,0.00001090975,0.0005761885,0.00001925686,0.000381766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008389585,"threshold_uncertainty_score":0.001668096,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157428620","doi":"10.1038/msb.2010.80","title":"Molecular characterization of the evolution of phagosomes","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Institute for Research in Immunology and Cancer; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Phagosome; Biology; Proteome; Organelle; Acquired immune system; Innate immune system; Phagocytosis; Cell biology; Immune system; Multicellular organism; Computational biology; Gene; Immunology; Bioinformatics; Genetics","authors":[{"name":"Jonathan Boulais","is_ca":true},{"name":"Matthias Trost","is_ca":true},{"name":"Christian R. Landry","is_ca":true},{"name":"Régis Dieckmann","is_ca":false},{"name":"Emmanuel D. Levy","is_ca":true},{"name":"Thierry Soldati","is_ca":false},{"name":"Stephen W. Michnick","is_ca":true},{"name":"Pierre Thibault","is_ca":true},{"name":"Michel Desjardins","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004509911470633369,"gpt":0.2398788975702869,"spread":0.2353689860996535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001802379,0.000112433,0.0001578816,0.0003104986,0.0001889471,0.0003412355,0.0001800721,0.0003090573,0.0003419674],"category_scores_gemma":[0.000293131,0.0001071307,0.0001781396,0.0001820636,0.000271004,0.0003581599,0.0003536933,0.0003335547,0.000247002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002544214,"about_ca_system_score_gemma":0.0002006748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006821319,"about_ca_topic_score_gemma":0.0007470915,"domain_scores_codex":[0.9999274,0.000008234866,0.000005511934,0.00002360606,0.00001665249,0.00001856359],"domain_scores_gemma":[0.9998331,0.00003685782,0.00003659195,0.00002220986,0.00003213809,0.00003904923],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004140534,0.000004753213,0.003072532,0.00002635173,0.000004018008,0.00007813325,0.00003330479,0.00003482707,0.9950545,0.0001594076,0.00001199229,0.001478784],"study_design_scores_gemma":[0.00001472608,0.0002108611,0.4398601,0.00003251634,0.00004915176,0.002349288,0.0003607418,0.001925159,0.5430911,0.0008018324,0.01128532,0.00001927682],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944561,0.001216471,0.002711139,0.00008368761,0.0000114296,0.00001269935,0.0004065337,0.00001536956,0.001086617],"genre_scores_gemma":[0.9939809,0.0006748434,0.003282823,0.00005014434,0.000008572927,0.00001191632,0.0009953409,0.00001179539,0.0009837101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006821319,"threshold_uncertainty_score":0.001845956,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161028192","doi":"10.1038/msb.2013.25","title":"Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Melanoma and MAPK Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canada Research Chairs; Canadian Institutes of Health Research; Fondation de France; Cancer Research Society","keywords":"Biology; Phosphoproteomics; Kinase; Cell biology; Phosphorylation; Alternative splicing; Chromatin; Computational biology; Protein phosphorylation; Genetics; Protein kinase A; Gene; Gene isoform","authors":[{"name":"Mathieu Courcelles","is_ca":true},{"name":"Christophe Frémin","is_ca":true},{"name":"Laure Voisin","is_ca":true},{"name":"Sébastien Lemieux","is_ca":true},{"name":"Sylvain Meloche","is_ca":true},{"name":"Pierre Thibault","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005699035251137267,"gpt":0.1940205345149684,"spread":0.1883214992638311,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001196833,0.0002844697,0.0002291236,0.0005126966,0.0001331151,0.0002417746,0.0001213788,0.0001683393,0.0008144011],"category_scores_gemma":[0.00011194,0.0001179698,0.0002469177,0.000373765,0.0001116316,0.0002604389,0.0001681561,0.0002234398,0.0002152698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001314904,"about_ca_system_score_gemma":0.00007875447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002576868,"about_ca_topic_score_gemma":0.0003519742,"domain_scores_codex":[0.9999444,0.000005751379,0.000004173159,0.00001692021,0.00001704722,0.00001169189],"domain_scores_gemma":[0.9999424,0.000008776531,0.00002075002,0.000005441174,0.00001053653,0.0000121554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003125388,0.00002376581,0.006206528,0.0000637307,0.00002242257,0.0001208564,0.00003364376,0.0002886754,0.9892944,0.0001160139,0.00006747558,0.003449994],"study_design_scores_gemma":[0.00003277221,0.0002327217,0.3936907,0.00001289092,0.0001167535,0.002197173,0.000171905,0.01672709,0.5832704,0.0007577657,0.00275841,0.00003149371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996743,0.0007001962,0.00168865,0.00002797481,0.000002910006,0.000005599713,0.0004753358,0.0000226984,0.0003337278],"genre_scores_gemma":[0.9952454,0.000544764,0.002607811,0.00001941753,0.00000445061,0.00001176964,0.001062838,0.00001045423,0.0004929225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008144011,"threshold_uncertainty_score":0.002724469,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3165074360","doi":"10.15252/msb.20209536","title":"From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions","year":2021,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; European Research Council; National Institutes of Health; SystemsX.ch; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; European Commission; National Research Foundation of Korea; Howard Hughes Medical Institute","keywords":"Biology; Proteome; Escherichia coli; Computational biology; Microbiology; Biochemistry; Gene","authors":[{"name":"Matteo Mori","is_ca":false},{"name":"Zhongge Zhang","is_ca":false},{"name":"Amir Banaei‐Esfahani","is_ca":false},{"name":"Jean‐Benoît Lalanne","is_ca":false},{"name":"Hiroyuki Okano","is_ca":false},{"name":"Ben C. Collins","is_ca":false},{"name":"Alexander Schmidt","is_ca":false},{"name":"Olga T. Schubert","is_ca":false},{"name":"Deok‐Sun Lee","is_ca":false},{"name":"Gene‐Wei Li","is_ca":false},{"name":"Ruedi Aebersold","is_ca":false},{"name":"Terence Hwa","is_ca":false},{"name":"Christina Ludwig","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01316984858442262,"gpt":0.2740495418554759,"spread":0.2608796932710533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008081406,0.0006672,0.0006409239,0.000935771,0.0004822051,0.001634438,0.000505196,0.000509824,0.0006605057],"category_scores_gemma":[0.001413598,0.0003598557,0.0004292099,0.00115969,0.0004232369,0.001243302,0.001156684,0.00119188,0.0004680614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003829165,"about_ca_system_score_gemma":0.0004153641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001199061,"about_ca_topic_score_gemma":0.002058063,"domain_scores_codex":[0.9993636,0.00006432377,0.00003935766,0.0002937931,0.0001947339,0.00004416972],"domain_scores_gemma":[0.999508,0.0001261641,0.00007758812,0.0001415729,0.000101092,0.00004568262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003514401,0.00005611625,0.01384791,0.0002584188,0.0001133382,0.000112743,0.0001666236,0.006701099,0.9276233,0.001055684,0.001456972,0.04825627],"study_design_scores_gemma":[0.00003793219,0.0002693051,0.1517987,0.00007528171,0.0001627798,0.000754919,0.0002848193,0.1156028,0.7046642,0.01031858,0.0158652,0.0001653809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7719011,0.001548733,0.2091718,0.0003857325,0.00006954483,0.00006897587,0.01107779,0.003515214,0.002260956],"genre_scores_gemma":[0.8067199,0.0009706314,0.1779426,0.0004072594,0.00003651997,0.0001113453,0.01227884,0.0006379096,0.0008950671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001634438,"threshold_uncertainty_score":0.004273891,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2766854106","doi":"10.15252/msb.20177819","title":"Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis","year":2017,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":154,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Ludwig-Maximilians-Universität München; Deutsche Forschungsgemeinschaft; Max-Planck-Gesellschaft; Queen Mary University of London","keywords":"Biology; Histone deacetylase; Arabidopsis; Histone; Histone deacetylase 5; SAP30; Acetylation; Histone deacetylase 2; HDAC11; Biochemistry; HDAC4; Cell biology; Mutant; Gene","authors":[{"name":"Markus Hartl","is_ca":false},{"name":"Magdalena Füßl","is_ca":false},{"name":"Paul J. Boersema","is_ca":false},{"name":"Jan Oliver Jost","is_ca":false},{"name":"Katharina Kramer","is_ca":false},{"name":"Ahmet Bakirbas","is_ca":false},{"name":"Julia Sindlinger","is_ca":false},{"name":"Magdalena Plöchinger","is_ca":false},{"name":"Dario Leister","is_ca":false},{"name":"R. Glen Uhrig","is_ca":true},{"name":"Greg B. G. Moorhead","is_ca":true},{"name":"Jürgen Cox","is_ca":false},{"name":"Michael E. Salvucci","is_ca":false},{"name":"Dirk Schwarzer","is_ca":false},{"name":"Matthias Mann","is_ca":false},{"name":"Iris Finkemeier","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03245799758097972,"gpt":0.2829206620517896,"spread":0.2504626644708098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007253414,0.0002461497,0.0002711595,0.0005748536,0.0001769777,0.0002598401,0.0001446076,0.0002089871,0.0006005198],"category_scores_gemma":[0.00007404495,0.0001532396,0.0002814987,0.0004634492,0.000105033,0.0001702413,0.000173932,0.000277377,0.0002435034],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002541697,"about_ca_system_score_gemma":0.0001256903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001012644,"about_ca_topic_score_gemma":0.001480374,"domain_scores_codex":[0.9999316,0.00000289497,0.000003712118,0.00003302188,0.00001629545,0.00001249421],"domain_scores_gemma":[0.999902,0.00001088077,0.00003787968,0.000009917188,0.00001764916,0.00002158335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005718295,0.000004228984,0.001520426,0.00002030317,0.000009688582,0.00002928993,0.000008615125,0.00001963024,0.9972914,0.00001324068,0.00002225531,0.001003711],"study_design_scores_gemma":[0.00002206458,0.000178513,0.506637,0.000009381658,0.0001259605,0.0009121112,0.0001135516,0.002549379,0.4863851,0.0001961691,0.002849335,0.00002141074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932468,0.001261691,0.002392323,0.00003977314,0.00001077974,0.00001267651,0.002437856,0.00009174911,0.0005063377],"genre_scores_gemma":[0.9918314,0.0005937824,0.003228748,0.00007064483,0.000007472336,0.0000204277,0.003240334,0.00003800586,0.0009692274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001012644,"threshold_uncertainty_score":0.002013445,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152027903","doi":"10.15252/msb.20134993","title":"A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration","year":2014,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Sociale en Geesteswetenschappen, NWO; Medical Research Council; Azrieli Foundation; Israel Science Foundation","keywords":"Warburg effect; Biology; Cancer cell; Cancer; Cancer research; Glycolysis; Anaerobic glycolysis; Cell culture; Cell growth; Gene silencing; Cell biology; Genetics; Biochemistry; Gene; Metabolism","authors":[{"name":"Keren Yizhak","is_ca":false},{"name":"Sylvia E. Le Dévédec","is_ca":false},{"name":"Vasiliki Maria Rogkoti","is_ca":false},{"name":"Franziska Baenke","is_ca":false},{"name":"Vincent C. J. de Boer","is_ca":false},{"name":"Christian Frezza","is_ca":false},{"name":"Almut Schulze","is_ca":false},{"name":"Bob van de Water","is_ca":false},{"name":"Eytan Ruppin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005930630633588165,"gpt":0.2538457967538198,"spread":0.2479151661202316,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001905125,0.0005233585,0.0006818147,0.0003822844,0.000317352,0.0006892676,0.0005805193,0.0008910754,0.001664912],"category_scores_gemma":[0.0009048837,0.0002916469,0.0007756131,0.0003589858,0.0003696407,0.0004113914,0.0003762464,0.0004186278,0.0001265008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006579731,"about_ca_system_score_gemma":0.0009262541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01222329,"about_ca_topic_score_gemma":0.009228429,"domain_scores_codex":[0.9999509,0.00001348869,0.000001850177,0.00001408793,0.000007552743,0.000012154],"domain_scores_gemma":[0.9996725,0.0002288718,0.0000313135,0.00001864227,0.00002205698,0.00002655477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00005021993,0.00002523079,0.001170034,0.00003546211,0.00002694647,0.00002928238,0.000007664883,0.9951403,0.0008721324,0.001104264,0.0002169703,0.001321406],"study_design_scores_gemma":[0.00001551993,0.00002129716,0.0003741223,0.000002125389,0.00001069655,0.000005266594,0.00000720439,0.9984967,0.0002551044,0.0006129884,0.0001964071,0.000002621149],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9610734,0.0005750689,0.02734895,0.0007404569,0.00007936756,0.00003280457,0.001312898,0.0003442034,0.008492922],"genre_scores_gemma":[0.9876631,0.0002491024,0.01002954,0.0001186769,0.00001661054,0.00006686011,0.0007504849,0.00003916068,0.001066423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01222329,"threshold_uncertainty_score":0.02430433,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2566177767","doi":"10.15252/msb.20167381","title":"Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila","year":2016,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Argonne National Laboratory; Biological and Environmental Research; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Canada Foundation for Innovation; Office of Extramural Research, National Institutes of Health; U.S. Department of Energy","keywords":"Effector; Legionella pneumophila; Biology; Cell biology; Secretion; Intracellular; Legionella; Intracellular parasite; Computational biology; Microbiology; Genetics; Bacteria; Biochemistry","authors":[{"name":"Malene L. Urbanus","is_ca":true},{"name":"Andrew T. Quaile","is_ca":true},{"name":"P.J. Stogios","is_ca":true},{"name":"Mariya Morar","is_ca":true},{"name":"Chitong Rao","is_ca":true},{"name":"Rosa Di Leo","is_ca":true},{"name":"E. Evdokimova","is_ca":true},{"name":"Mandy Hiu Yi Lam","is_ca":true},{"name":"Christina Oatway","is_ca":true},{"name":"M.E. Cuff","is_ca":false},{"name":"J. Osipiuk","is_ca":false},{"name":"K. Michalska","is_ca":false},{"name":"B. Nocek","is_ca":false},{"name":"Mikko Taipale","is_ca":true},{"name":"Alexei Savchenko","is_ca":true},{"name":"Alexander W. Ensminger","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01577687059443217,"gpt":0.2630236494711083,"spread":0.2472467788766762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003393078,0.0003163561,0.0003032216,0.0004802022,0.0001540439,0.0006064103,0.0001660549,0.000237609,0.0005533753],"category_scores_gemma":[0.0004532667,0.0001625591,0.0003731548,0.0004257038,0.0002183522,0.0002921835,0.0003039591,0.0002534919,0.0002542194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002339943,"about_ca_system_score_gemma":0.0001274855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002317752,"about_ca_topic_score_gemma":0.0005480698,"domain_scores_codex":[0.9997087,0.00003760043,0.00003898194,0.00007283369,0.0001101338,0.0000317972],"domain_scores_gemma":[0.9997604,0.00007858343,0.00006383922,0.00004420867,0.00002526305,0.00002758136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009551327,0.00002560971,0.01011174,0.0000577979,0.00002198482,0.00007603749,0.00002916176,0.0003458963,0.9853271,0.0001541453,0.00002510884,0.003729894],"study_design_scores_gemma":[0.0000144073,0.0004464384,0.1146097,0.00001932756,0.00008185019,0.001515925,0.0002002753,0.00448287,0.8757879,0.000373166,0.002444907,0.00002327335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956892,0.0007783287,0.002342032,0.00002593529,0.000003311306,0.00001388807,0.0004267449,0.00008769804,0.0006327069],"genre_scores_gemma":[0.9950321,0.0004145559,0.003162152,0.00002552876,0.000002653861,0.00001452107,0.0008300145,0.00001567501,0.0005028664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006064103,"threshold_uncertainty_score":0.001851201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159241859","doi":"10.1038/msb.2010.71","title":"Dynamic interaction networks in a hierarchically organized tissue","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; Heart and Stroke Foundation; Occupational Cancer Research Centre; Mount Sinai Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Cell biology; Intracellular; Stem cell; Progenitor cell; Cell fate determination; Cellular differentiation; Neuroscience; Transcription factor; Genetics","authors":[{"name":"Daniel C. Kirouac","is_ca":true},{"name":"Caryn Y. Ito","is_ca":true},{"name":"Elizabeth Csaszar","is_ca":true},{"name":"Aline Roch","is_ca":false},{"name":"Mei Yu","is_ca":true},{"name":"Edward A. Sykes","is_ca":true},{"name":"Gary D. Bader","is_ca":true},{"name":"Peter W. Zandstra","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005031726258611793,"gpt":0.2870766881113778,"spread":0.282044961852766,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002264117,0.0002268672,0.0002271876,0.001208168,0.0005705196,0.001068045,0.0005290167,0.0003845743,0.001319811],"category_scores_gemma":[0.0009359752,0.0003355441,0.0003393346,0.0009130708,0.0009756302,0.001655106,0.0005824959,0.0003248958,0.0003777915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000748183,"about_ca_system_score_gemma":0.0005860562,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002256858,"about_ca_topic_score_gemma":0.002602835,"domain_scores_codex":[0.9997355,0.00006883483,0.00001485503,0.00008066493,0.00007152749,0.00002851355],"domain_scores_gemma":[0.9994606,0.0002196352,0.0001383674,0.00007458925,0.00006197806,0.0000448126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001222119,0.00007593071,0.01204182,0.0004285616,0.0001449607,0.001203602,0.0008105442,0.4653582,0.1641438,0.2838793,0.002202626,0.06958848],"study_design_scores_gemma":[0.00003213977,0.00007532128,0.01329594,0.00004245668,0.00008266832,0.0005562746,0.0003107212,0.6876321,0.01431323,0.2626914,0.02091428,0.00005343335],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3915974,0.00230776,0.5925709,0.0007873353,0.00002787906,0.00007254888,0.0008296583,0.000932737,0.01087376],"genre_scores_gemma":[0.8863688,0.00118895,0.1088715,0.00007744275,0.00002615432,0.0001165699,0.0005806125,0.00006449434,0.002705426],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002256858,"threshold_uncertainty_score":0.005428493,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098734267","doi":"10.15252/msb.20145487","title":"Integrated systems analysis reveals a molecular network underlying autism spectrum disorders","year":2014,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":139,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Human Genome Research Institute; National Institute of Mental Health; Department of Genetics, University of Alabama at Birmingham; National Institutes of Health; Hospital for Sick Children; Autism Speaks","keywords":"Autism; Biology; Corpus callosum; Interactome; Genetics; Gene; Candidate gene; Oligodendrocyte; Computational biology; Neuroscience; Psychology; Myelin; Central nervous system","authors":[{"name":"Jingjing Li","is_ca":false},{"name":"Minyi Shi","is_ca":false},{"name":"Zhihai Ma","is_ca":false},{"name":"Shuchun Zhao","is_ca":false},{"name":"Ghia Euskirchen","is_ca":false},{"name":"Jennifer Ziskin","is_ca":false},{"name":"Alexander E. Urban","is_ca":false},{"name":"Joachim Hallmayer","is_ca":false},{"name":"M Snyder","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02499525182800511,"gpt":0.2929482038616876,"spread":0.2679529520336825,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006282398,0.0005567677,0.0005772513,0.001295263,0.0003399737,0.001112167,0.0004225909,0.0002315338,0.001304428],"category_scores_gemma":[0.00144157,0.0002571376,0.000578803,0.0007755957,0.0008335341,0.0007780382,0.0008548069,0.0004305239,0.0001264631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001287748,"about_ca_system_score_gemma":0.0008653344,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004305406,"about_ca_topic_score_gemma":0.004013767,"domain_scores_codex":[0.9994711,0.0001955414,0.00002237091,0.0001614018,0.0001000394,0.00004946447],"domain_scores_gemma":[0.9995338,0.0002423777,0.00009237495,0.00004904256,0.00005219831,0.0000302747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001028408,0.0003092229,0.1424587,0.0007751804,0.002584671,0.001504227,0.001229356,0.4412434,0.1314629,0.1610896,0.001681262,0.1146331],"study_design_scores_gemma":[0.00004634429,0.0001839038,0.07366358,0.00003018739,0.0003918458,0.0002992529,0.0002575158,0.7614637,0.007377923,0.1534681,0.002761523,0.000056143],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6852776,0.0009977377,0.3034889,0.0007394704,0.00001585313,0.0001332228,0.001367692,0.001488099,0.006491339],"genre_scores_gemma":[0.9692234,0.0003095232,0.02938515,0.00003916792,0.000008621793,0.00007437431,0.0005825894,0.00002412734,0.0003530764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004305406,"threshold_uncertainty_score":0.009343266,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3206048415","doi":"10.15252/msb.202110335","title":"High‐efficiency delivery of CRISPR‐Cas9 by engineered probiotics enables precise microbiome editing","year":2021,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"CRISPR; Biology; Genome editing; Microbiome; Cas9; Computational biology; Genetics; Gene","authors":[{"name":"Kevin Neil","is_ca":true},{"name":"Nancy Allard","is_ca":true},{"name":"Patricia Roy","is_ca":true},{"name":"Frédéric Grenier","is_ca":true},{"name":"Alfredo Menéndez","is_ca":true},{"name":"Vincent Burrus","is_ca":true},{"name":"Sébastien Rodrigue","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003842842298421581,"gpt":0.2490996015674397,"spread":0.2452567592690181,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004576107,0.0004788186,0.0003754336,0.0002775177,0.0001761786,0.00065379,0.0003638866,0.0004715237,0.001268067],"category_scores_gemma":[0.000448128,0.0002366897,0.0002961908,0.0001727892,0.0003559683,0.000294106,0.0004897194,0.0009132887,0.0004875585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000337053,"about_ca_system_score_gemma":0.0003687401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005298033,"about_ca_topic_score_gemma":0.001110205,"domain_scores_codex":[0.9995585,0.00006284075,0.00004843349,0.00009997623,0.0001653613,0.00006484419],"domain_scores_gemma":[0.9997151,0.00006223577,0.0001014318,0.00004872259,0.00003130459,0.00004108225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002179981,0.00001650255,0.00008966079,0.00001773482,0.000003778307,0.00001739925,0.000007027077,0.0001491973,0.9980489,0.0001327554,0.00003111166,0.001464115],"study_design_scores_gemma":[0.000005546602,0.00009540585,0.0005086892,0.000002976187,0.000006713827,0.00006532512,0.000006689942,0.001452993,0.9958709,0.00004478739,0.001934635,0.000005277499],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8837109,0.0009965996,0.1100468,0.0003632652,0.0001109111,0.0001638817,0.0007053654,0.0009811417,0.002921015],"genre_scores_gemma":[0.9454075,0.0005850949,0.04928754,0.00007994085,0.00001271922,0.00007873827,0.0005797618,0.0001527481,0.003816004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001268067,"threshold_uncertainty_score":0.004242063,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156361395","doi":"10.1038/msb.2010.61","title":"Modeling genome‐wide replication kinetics reveals a mechanism for regulation of replication timing","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; American Cancer Society","keywords":"Replication (statistics); Replication timing; Biology; Origin of replication; Minichromosome maintenance; Computational biology; Origin recognition complex; Mechanism (biology); DNA replication; Minichromosome; Genome; Chromatin; Genetics; DNA; Eukaryotic DNA replication; Gene; Physics","authors":[{"name":"Scott Cheng‐Hsin Yang","is_ca":true},{"name":"Nick Rhind","is_ca":false},{"name":"John Bechhoefer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01801413166576629,"gpt":0.2712470660161777,"spread":0.2532329343504114,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009378028,0.0005042682,0.0005709262,0.0004225236,0.0003019736,0.0008034632,0.0008090205,0.0008631763,0.0004310951],"category_scores_gemma":[0.002906115,0.0005912512,0.0007544211,0.0004681973,0.0005385887,0.0009857786,0.000329089,0.0006710396,0.0001961716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001057877,"about_ca_system_score_gemma":0.0007777847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005565054,"about_ca_topic_score_gemma":0.003980298,"domain_scores_codex":[0.9997464,0.00007351994,0.00001316976,0.0000950432,0.00004063419,0.00003117091],"domain_scores_gemma":[0.9992423,0.0005158105,0.0001176218,0.00006359152,0.00003728419,0.00002347149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00004432977,0.000022594,0.002695601,0.00003225982,0.00003252404,0.00003520992,0.00005891325,0.9695441,0.01728261,0.00699203,0.00007115884,0.003188735],"study_design_scores_gemma":[0.000004637034,0.00001120964,0.0008332398,0.000001464169,0.00000708276,0.00001376085,0.000005366603,0.9950042,0.001117222,0.002867047,0.0001283754,0.000006391782],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5476278,0.0003964419,0.4496199,0.0004083405,0.00001944161,0.00003149311,0.0001683174,0.0003481041,0.00138007],"genre_scores_gemma":[0.9781913,0.0003261243,0.02022749,0.000036575,0.000011361,0.00005740292,0.0001162996,0.00005105448,0.0009823841],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005565054,"threshold_uncertainty_score":0.0110653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969124154","doi":"10.1038/msb.2011.68","title":"The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation","year":2011,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Computational biology; Cell biology; Major histocompatibility complex; Immunology; Immune system","authors":[{"name":"Étienne Caron","is_ca":true},{"name":"Krystel Vincent","is_ca":true},{"name":"Marie‐Hélène Fortier","is_ca":true},{"name":"Jean‐Philippe Laverdure","is_ca":true},{"name":"Alexandre Bramoullé","is_ca":true},{"name":"Marie‐Pierre Hardy","is_ca":true},{"name":"Grégory Voisin","is_ca":true},{"name":"Philippe P. Roux","is_ca":true},{"name":"Sébastien Lemieux","is_ca":true},{"name":"Pierre Thibault","is_ca":true},{"name":"Claude Perreault","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01351410005063318,"gpt":0.222003433229303,"spread":0.2084893331786699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001587129,0.0002664766,0.0003111912,0.0001787215,0.0002097921,0.0009706185,0.0001919608,0.000363515,0.0007119247],"category_scores_gemma":[0.0001521141,0.0001573465,0.0001921249,0.0001397349,0.0005540227,0.0006099135,0.000231692,0.0006071988,0.0003194307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003591661,"about_ca_system_score_gemma":0.0001542233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001718061,"about_ca_topic_score_gemma":0.0001848699,"domain_scores_codex":[0.9998938,0.00001467581,0.000003877155,0.00004168101,0.00003257759,0.0000133643],"domain_scores_gemma":[0.9999236,0.00001790249,0.00002656716,0.00001094689,0.00001021461,0.00001077021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004143746,0.0000046532,0.0002473739,0.00003502467,0.00000525675,0.00002759801,0.00001172741,0.0001843546,0.9952683,0.001132827,0.00005508881,0.002986455],"study_design_scores_gemma":[0.000005392887,0.0001005071,0.004831346,0.000007861517,0.00001710696,0.0002387524,0.00004397365,0.003756004,0.9834751,0.001381854,0.006130099,0.00001204309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9289728,0.009256039,0.05317795,0.000979059,0.0001440697,0.000024238,0.0006079864,0.0003242526,0.006513552],"genre_scores_gemma":[0.9795294,0.002986903,0.01530089,0.0001778046,0.00003902843,0.00001958307,0.0002042967,0.00003115663,0.001710856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009706185,"threshold_uncertainty_score":0.002605915,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2339738230","doi":"10.15252/msb.20156660","title":"Pooled‐matrix protein interaction screens using Barcode Fusion Genetics","year":2016,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":128,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research; Lunenfeld-Tanenbaum Research Institute; Ontario Institute for Cancer Research; University of Toronto","funders":"Japan Science and Technology Agency; Canadian Institutes of Health Research; Life Science Foundation of Japan; National Human Genome Research Institute; Nestlé Nutrition Council, Japan; Astellas Foundation for Research on Metabolic Disorders; Krembil Foundation; Canada Excellence Research Chairs, Government of Canada; Japan Society for the Promotion of Science London; Avon Foundation for Women","keywords":"Barcode; Biology; Computational biology; Genetics; Fusion protein; Computer science; Gene; Recombinant DNA","authors":[{"name":"Nozomu Yachie","is_ca":true},{"name":"Evangelia Petsalaki","is_ca":true},{"name":"Joseph Mellor","is_ca":true},{"name":"Jochen Weile","is_ca":true},{"name":"Yves Jacob","is_ca":false},{"name":"Marta Verby","is_ca":true},{"name":"Sedide Öztürk","is_ca":true},{"name":"Siyang Li","is_ca":true},{"name":"Atina G. Coté","is_ca":true},{"name":"Roberto Mosca","is_ca":false},{"name":"Jennifer J. Knapp","is_ca":true},{"name":"Minjeong Ko","is_ca":true},{"name":"Analyn Yu","is_ca":true},{"name":"Marinella Gebbia","is_ca":true},{"name":"Nidhi Sahni","is_ca":false},{"name":"S. Stephen Yi","is_ca":false},{"name":"Tanya Tyagi","is_ca":true},{"name":"Dayag Sheykhkarimli","is_ca":true},{"name":"Jonathan Roth","is_ca":true},{"name":"Cassandra J. Wong","is_ca":true},{"name":"Louai Musa","is_ca":true},{"name":"Jamie Snider","is_ca":true},{"name":"Yichun Liu","is_ca":true},{"name":"Haiyuan Yu","is_ca":false},{"name":"Pascal Falter‐Braun","is_ca":false},{"name":"Igor Štagljar","is_ca":true},{"name":"Tong Hao","is_ca":false},{"name":"Michael A. Calderwood","is_ca":false},{"name":"Laurence Pelletier","is_ca":true},{"name":"Patrick Aloy","is_ca":false},{"name":"David E. Hill","is_ca":false},{"name":"Marc Vidal","is_ca":false},{"name":"Frederick P. Roth","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02232210647343369,"gpt":0.3187864556190539,"spread":0.2964643491456203,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001111658,0.001494941,0.001010502,0.0009839498,0.0005226957,0.001010571,0.001077596,0.0009667709,0.002492441],"category_scores_gemma":[0.0009291486,0.0005543066,0.0009436219,0.0008500557,0.0005942262,0.000618096,0.001655046,0.001311808,0.001658324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006646924,"about_ca_system_score_gemma":0.0004167135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001322677,"about_ca_topic_score_gemma":0.003250875,"domain_scores_codex":[0.9976369,0.0003013935,0.0001680119,0.0004715984,0.001137892,0.0002840959],"domain_scores_gemma":[0.9989781,0.0003125785,0.0002320931,0.0001612629,0.0001781492,0.0001377847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004443398,0.00003519935,0.0001181964,0.00003990957,0.0000213994,0.00002867224,0.00001486852,0.0001260813,0.9982186,0.00009069996,0.00008988375,0.001172001],"study_design_scores_gemma":[0.000009223401,0.00016638,0.001042646,0.000003750647,0.00001915388,0.0001307246,0.00001425512,0.001411353,0.9954174,0.0000705031,0.001700868,0.00001385985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.725218,0.001351988,0.258993,0.0004741404,0.0001825877,0.0009008048,0.003656846,0.004479799,0.004742851],"genre_scores_gemma":[0.7863862,0.001386166,0.1936689,0.0003854553,0.00003741949,0.0008275748,0.006801974,0.001322837,0.009183536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002492441,"threshold_uncertainty_score":0.008337975,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105372361","doi":"10.1038/msb.2009.49","title":"Cell–cell interaction networks regulate blood stem and progenitor cell fate","year":2009,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Hematopoietic Stem Cell Transplantation","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; Heart and Stroke Foundation; University Health Network; Aptose Biosciences (Canada); University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Stem Cell Network; John Simon Guggenheim Memorial Foundation","keywords":"Biology; Cell biology; Cell fate determination; Progenitor cell; Stem cell; Cell; In silico; Intracellular; Multicellular organism; Haematopoiesis; Cell type; Cellular differentiation; Cell signaling; Blood cell; Signal transduction; Immunology; Transcription factor; Genetics","authors":[{"name":"Daniel C. Kirouac","is_ca":true},{"name":"Gerard J. Madlambayan","is_ca":false},{"name":"Mei Yu","is_ca":true},{"name":"Edward A. Sykes","is_ca":true},{"name":"Caryn Y. Ito","is_ca":true},{"name":"Peter W. Zandstra","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008634923532160018,"gpt":0.2377507861391323,"spread":0.2291158626069723,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002286056,0.0003244439,0.0003164957,0.0002277198,0.0003172948,0.0007707304,0.0003696109,0.0004494174,0.0006374762],"category_scores_gemma":[0.001042031,0.0002999459,0.0002686444,0.0002432618,0.0006544383,0.00078564,0.0002628088,0.0003592361,0.0002072559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007160106,"about_ca_system_score_gemma":0.0005659431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001210357,"about_ca_topic_score_gemma":0.001080635,"domain_scores_codex":[0.9998149,0.00004973416,0.000009516404,0.00004754841,0.00005310275,0.00002517203],"domain_scores_gemma":[0.9996866,0.0001684218,0.00007654992,0.00002268583,0.00002789042,0.00001787467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001064375,0.00006003136,0.003505187,0.00007608974,0.00003860739,0.0001585379,0.00008270663,0.5882784,0.3740188,0.02394914,0.0002362318,0.009489912],"study_design_scores_gemma":[0.00002087273,0.00004955164,0.002242571,0.000004901539,0.00002731792,0.00006673411,0.00003374494,0.9317661,0.05515262,0.009052284,0.00156543,0.00001786077],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8383664,0.0006987661,0.1555318,0.0003165368,0.00003224028,0.0000282754,0.0001579468,0.0002805944,0.004587402],"genre_scores_gemma":[0.9940203,0.0003186129,0.004981872,0.00002017655,0.000004554392,0.0000213092,0.00004416797,0.00001577094,0.0005732664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001210357,"threshold_uncertainty_score":0.005195081,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148726194","doi":"10.1038/msb.2010.82","title":"Genetic interactions reveal the evolutionary trajectories of duplicate genes","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Human Genome Research Institute; National Institutes of Health; Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Magyar Tudományos Akadémia; Hungarian Scientific Research Fund; Ontario Genomics Institute; Canadian Institute for Advanced Research; University of Minnesota","keywords":"Biology; Gene; Genetics; Genome; Evolutionary biology; Computational biology","authors":[{"name":"Benjamin VanderSluis","is_ca":false},{"name":"Jeremy Bellay","is_ca":false},{"name":"Gabriel Musso","is_ca":true},{"name":"Michael Costanzo","is_ca":true},{"name":"Balázs Papp","is_ca":false},{"name":"Franco J. Vizeacoumar","is_ca":true},{"name":"Anastasia Baryshnikova","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Chad L. Myers","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006062301342679183,"gpt":0.2305591777771554,"spread":0.2244968764344762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005630289,0.0001405745,0.0003755811,0.001023599,0.000582158,0.0007689115,0.000324047,0.0004195187,0.0007877421],"category_scores_gemma":[0.002469985,0.000324352,0.000224795,0.0009346593,0.0004330614,0.0007357057,0.0006591697,0.0006259672,0.000247078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007911711,"about_ca_system_score_gemma":0.0003507675,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001455034,"about_ca_topic_score_gemma":0.001797535,"domain_scores_codex":[0.9997504,0.0000419287,0.00001630125,0.00008607445,0.00007013919,0.00003502816],"domain_scores_gemma":[0.9991455,0.0003090349,0.0002297967,0.00009062771,0.0001197767,0.0001052359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008520606,0.0001041717,0.2370695,0.0002391594,0.0002559052,0.001489417,0.001362244,0.03517114,0.638069,0.0273542,0.0007357455,0.05729754],"study_design_scores_gemma":[0.00006066533,0.0003477186,0.6581481,0.00005941966,0.0003182027,0.003683502,0.001492518,0.1435914,0.1223793,0.05644071,0.01328265,0.0001958067],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940107,0.0003819531,0.004496816,0.00009386006,0.000002742612,0.000004393181,0.0001541815,0.00002292457,0.000832401],"genre_scores_gemma":[0.9947655,0.0002228338,0.004135598,0.00002555968,0.000003118614,0.000009480524,0.0002825565,0.00001471298,0.0005405738],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001455034,"threshold_uncertainty_score":0.005740404,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3205620409","doi":"10.15252/msb.202110387","title":"COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms","year":2021,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Occupational Cancer Research Centre; University of Toronto; Ontario Institute for Cancer Research","funders":"Bundesministerium für Bildung und Forschung; Association Nationale de la Recherche et de la Technologie; National Institute of General Medical Sciences; Horizon 2020 Framework Programme; ZonMw; Biotechnology and Biological Sciences Research Council; H2020 Marie Skłodowska-Curie Actions; National Human Genome Research Institute; Fonds National de la Recherche Luxembourg; Deutsches Zentrum für Infektionsforschung; H2020 LEIT Information and Communication Technologies; European Commission","keywords":"Interoperability; Data science; Computer science; Representation (politics); Resource (disambiguation); Computational model; Perspective (graphical); Biology; Computational biology; World Wide Web; Artificial intelligence","authors":[{"name":"Marek Ostaszewski","is_ca":false},{"name":"Anna Niarakis","is_ca":false},{"name":"Alexander Mazein","is_ca":false},{"name":"Inna Kuperstein","is_ca":false},{"name":"Robert D. Phair","is_ca":false},{"name":"Aurelio Orta‐Resendiz","is_ca":false},{"name":"Vidisha Singh","is_ca":false},{"name":"Sara Sadat Aghamiri","is_ca":false},{"name":"Márcio Luís Acencio","is_ca":false},{"name":"Enrico Glaab","is_ca":false},{"name":"Andreas Ruepp","is_ca":false},{"name":"Gisela Fobo","is_ca":false},{"name":"Corinna Montrone","is_ca":false},{"name":"Barbara Brauner","is_ca":false},{"name":"Goar Frishman","is_ca":false},{"name":"Luis Cristóbal Monraz Gómez","is_ca":false},{"name":"Julia Somers","is_ca":false},{"name":"Matti Hoch","is_ca":false},{"name":"Shailendra K. Gupta","is_ca":false},{"name":"Julia Scheel","is_ca":false},{"name":"Hanna Borlinghaus","is_ca":false},{"name":"Tobias Czauderna","is_ca":false},{"name":"Falk Schreiber","is_ca":false},{"name":"Arnau Montagud","is_ca":false},{"name":"Miguel Ponce-de-León","is_ca":false},{"name":"Akira Funahashi","is_ca":false},{"name":"Yusuke Hiki","is_ca":false},{"name":"Noriko Hiroi","is_ca":false},{"name":"Takahiro Yamada","is_ca":false},{"name":"Andreas Dräger","is_ca":false},{"name":"Alina Renz","is_ca":false},{"name":"Muhammad Naveez","is_ca":false},{"name":"Zsolt Böcskei","is_ca":false},{"name":"Francesco Messina","is_ca":false},{"name":"Daniela Börnigen","is_ca":false},{"name":"Liam Fergusson","is_ca":false},{"name":"Marta Zaffira Conti","is_ca":false},{"name":"Marius Rameil","is_ca":false},{"name":"Vanessa Nakonecnij","is_ca":false},{"name":"Jakob Vanhoefer","is_ca":false},{"name":"Leonard Schmiester","is_ca":false},{"name":"Muying Wang","is_ca":false},{"name":"Emily E. Ackerman","is_ca":false},{"name":"Jason E. Shoemaker","is_ca":false},{"name":"Jeremy Zucker","is_ca":false},{"name":"Kristie Oxford","is_ca":false},{"name":"Jeremy Teuton","is_ca":false},{"name":"Ebru Kocakaya","is_ca":false},{"name":"Gökçe Yağmur Summak","is_ca":false},{"name":"Kristina Hanspers","is_ca":false},{"name":"Martina Kutmon","is_ca":false},{"name":"Susan L. Coort","is_ca":false},{"name":"Lars Eijssen","is_ca":false},{"name":"Friederike Ehrhart","is_ca":false},{"name":"Rex Devasahayam Arokia Balaya","is_ca":false},{"name":"Denise Slenter","is_ca":false},{"name":"Marvin Martens","is_ca":false},{"name":"Nhung Pham","is_ca":false},{"name":"Robin Haw","is_ca":true},{"name":"Bijay Jassal","is_ca":true},{"name":"Lisa Matthews","is_ca":false},{"name":"M Orlic-Milacic","is_ca":true},{"name":"Andrea Senff‐Ribeiro","is_ca":true},{"name":"Karen Rothfels","is_ca":true},{"name":"Veronica Shamovsky","is_ca":false},{"name":"Ralf Stephan","is_ca":true},{"name":"Cristoffer Sevilla","is_ca":false},{"name":"Thawfeek Varusai","is_ca":false},{"name":"Jean‐Marie Ravel","is_ca":false},{"name":"Rupsha Fraser","is_ca":false},{"name":"Vera Ortseifen","is_ca":false},{"name":"Silvia Marchesi","is_ca":false},{"name":"Piotr Gawron","is_ca":false},{"name":"Ewa Smula","is_ca":false},{"name":"Laurent Heirendt","is_ca":false},{"name":"Venkata Satagopam","is_ca":false},{"name":"Guanming Wu","is_ca":false},{"name":"Anders Riutta","is_ca":false},{"name":"Martin Golebiewski","is_ca":false},{"name":"Stuart Owen","is_ca":false},{"name":"Carole Goble","is_ca":false},{"name":"Xiaoming Hu","is_ca":false},{"name":"Rupert W. Overall","is_ca":false},{"name":"Dieter Maier","is_ca":false},{"name":"Angela Bauch","is_ca":false},{"name":"Benjamin M. Gyori","is_ca":false},{"name":"John A. Bachman","is_ca":false},{"name":"Carlos Vega","is_ca":false},{"name":"Valentin Grouès","is_ca":false},{"name":"Miguél Vázquez","is_ca":false},{"name":"Pablo Porras","is_ca":false},{"name":"Luana Licata","is_ca":false},{"name":"Marta Iannuccelli","is_ca":false},{"name":"Francesca Sacco","is_ca":false},{"name":"Anastasia Nesterova","is_ca":false},{"name":"Anton Yuryev","is_ca":false},{"name":"Anita de Waard","is_ca":false},{"name":"Dénes Türei","is_ca":false},{"name":"Augustin Luna","is_ca":false},{"name":"Özgün Babur","is_ca":false},{"name":"Sylvain Soliman","is_ca":false},{"name":"Alberto Valdeolivas","is_ca":false},{"name":"Marina Esteban‐Medina","is_ca":false},{"name":"María Peña-Chilet","is_ca":false},{"name":"Kinza Rian","is_ca":false},{"name":"Tomáš Helikar","is_ca":false},{"name":"Bhanwar Lal Puniya","is_ca":false},{"name":"Dezső Módos","is_ca":false},{"name":"Agatha Treveil","is_ca":false},{"name":"Márton Ölbei","is_ca":false},{"name":"Bertrand De Meulder","is_ca":false},{"name":"Stéphane Ballereau","is_ca":false},{"name":"Aurélien Dugourd","is_ca":false},{"name":"Aurélien Naldi","is_ca":false},{"name":"Laurence Calzone","is_ca":false},{"name":"Chris Sander","is_ca":false},{"name":"Emek Demir","is_ca":false},{"name":"Tamás Korcsmáros","is_ca":false},{"name":"Tom C. Freeman","is_ca":false},{"name":"Franck Augé","is_ca":false},{"name":"J. Beckmann","is_ca":false},{"name":"Jan Hasenauer","is_ca":false},{"name":"Olaf Wolkenhauer","is_ca":false},{"name":"Egon Willighagen","is_ca":false},{"name":"Alexander R. Pico","is_ca":false},{"name":"Chris T. Evelo","is_ca":false},{"name":"Marc Gillespie","is_ca":true},{"name":"Lincoln Stein","is_ca":true},{"name":"Henning Hermjakob","is_ca":false},{"name":"Peter D’Eustachio","is_ca":false},{"name":"Julio Sáez-Rodríguez","is_ca":false},{"name":"Joaquı́n Dopazo","is_ca":false},{"name":"Alfonso Valencia","is_ca":false},{"name":"Hiroaki Kitano","is_ca":false},{"name":"Emmanuel Barillot","is_ca":false},{"name":"Charles Auffray","is_ca":false},{"name":"Rudi Balling","is_ca":false},{"name":"Reinhard Schneider","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006832483697214791,"gpt":0.2423652035600461,"spread":0.2355327198628313,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005630409,0.002090586,0.002086714,0.01815589,0.001230433,0.007134178,0.005442914,0.002784255,0.01268001],"category_scores_gemma":[0.0197911,0.001222932,0.003800869,0.01070979,0.0009403751,0.006063746,0.005337104,0.0028907,0.005417801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002112575,"about_ca_system_score_gemma":0.006859405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007820105,"about_ca_topic_score_gemma":0.01241077,"domain_scores_codex":[0.9981046,0.0004544746,0.0003131778,0.0004982965,0.0005273464,0.0001021197],"domain_scores_gemma":[0.9897915,0.004865405,0.0009240517,0.002685872,0.0010767,0.0006565105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008643243,0.0005113154,0.02454893,0.01438805,0.002572615,0.002760077,0.001449612,0.1164679,0.01178686,0.2020658,0.3462296,0.2763549],"study_design_scores_gemma":[0.0002752897,0.0001402964,0.005100082,0.001908847,0.0009248381,0.00119401,0.0004532954,0.1372564,0.007207907,0.1678749,0.677358,0.0003060185],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.01268609,0.009108342,0.4763833,0.005445216,0.0008229276,0.0009063231,0.3993027,0.07241435,0.0229307],"genre_scores_gemma":[0.07343157,0.01079739,0.4665844,0.001025161,0.0002715743,0.001121066,0.4386571,0.004818936,0.003292883],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01815589,"threshold_uncertainty_score":0.04241878,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2029346055","doi":"10.1038/msb.2013.54","title":"A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; University of Regina; Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Saskatchewan Cancer Agency; University of Saskatchewan; University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; Canadian Institute for Advanced Research","keywords":"Biology; PTEN; Computational biology; Genetics; Gene; Cancer; Genome; Genomics; Genetic screen; Phenotype; PI3K/AKT/mTOR pathway; Signal transduction","authors":[{"name":"Franco J. Vizeacoumar","is_ca":true},{"name":"Roland Arnold","is_ca":true},{"name":"Frederick S. Vizeacoumar","is_ca":true},{"name":"Megha Chandrashekhar","is_ca":true},{"name":"Alla Buzina","is_ca":true},{"name":"Jordan T.F. Young","is_ca":true},{"name":"Julian Kwan","is_ca":true},{"name":"Azin Sayad","is_ca":true},{"name":"Patricia Mero","is_ca":true},{"name":"Steffen Lawo","is_ca":true},{"name":"Hiromasa Tanaka","is_ca":true},{"name":"Kevin R. Brown","is_ca":true},{"name":"Anastasia Baryshnikova","is_ca":true},{"name":"Anthony B. Mak","is_ca":true},{"name":"Yaroslav Fedyshyn","is_ca":true},{"name":"Yadong Wang","is_ca":true},{"name":"Glauber C. Brito","is_ca":true},{"name":"Dahlia Kasimer","is_ca":true},{"name":"Taras Makhnevych","is_ca":true},{"name":"Troy Ketela","is_ca":true},{"name":"Alessandro Datti","is_ca":true},{"name":"Mohan Babu","is_ca":true},{"name":"Andrew Emili","is_ca":true},{"name":"Laurence Pelletier","is_ca":true},{"name":"Jeffrey L. Wrana","is_ca":true},{"name":"Zev A. Wainberg","is_ca":false},{"name":"Philip M. Kim","is_ca":true},{"name":"Robert Rottapel","is_ca":true},{"name":"Catherine O′Brien","is_ca":true},{"name":"Brenda Andrews","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Jason Moffat","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007405068352220564,"gpt":0.2461850152360143,"spread":0.2387799468837938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002453391,0.0002631605,0.0002748603,0.0009548845,0.0002603458,0.0003381149,0.0002215042,0.0001738111,0.0007858101],"category_scores_gemma":[0.0005736998,0.0001542651,0.0002450543,0.0006212987,0.0002537501,0.0001746202,0.0003959221,0.0004232169,0.0001932425],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004139543,"about_ca_system_score_gemma":0.0002318526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008342901,"about_ca_topic_score_gemma":0.0016996,"domain_scores_codex":[0.9997591,0.00003742195,0.0000152699,0.00007993458,0.00008312856,0.00002502219],"domain_scores_gemma":[0.9995528,0.0001639362,0.0000848671,0.000102037,0.00005188376,0.00004459664],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001308022,0.00003095448,0.008326438,0.00004078708,0.00002963177,0.0001967404,0.00004413097,0.004154086,0.9790269,0.001898765,0.0000990008,0.006021743],"study_design_scores_gemma":[0.00003104024,0.0003271866,0.1460559,0.00001389776,0.0001865379,0.00171157,0.000184923,0.0880928,0.7470827,0.008712817,0.00755521,0.00004531146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9669353,0.0001238966,0.03008646,0.00005292418,0.000006108206,0.00002606395,0.0008521414,0.0002545339,0.00166248],"genre_scores_gemma":[0.9879078,0.0001060515,0.009451156,0.00004568206,0.000001939523,0.00003237644,0.001798672,0.00004811909,0.0006081576],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009548845,"threshold_uncertainty_score":0.003003478,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}