{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":122,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":122,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"803bb59576b8","filters":{"venue":"Molecular and Biochemical Parasitology"}},"results":[{"id":"W2087677809","doi":"10.1016/s0166-6851(01)00432-7","title":"Targeted gene deletion in Leishmania major identifies leishmanolysin (GP63) as a virulence factor","year":2002,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":270,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Vancouver Hospital and Health Sciences Centre; University of British Columbia Hospital","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Virulence factor; Gene; Leishmania; Leishmania major; Genetics; Parasite hosting","authors":[{"name":"Ben L. Kelly","is_ca":true},{"name":"Shaden Kamhawi","is_ca":false},{"name":"David L. Sacks","is_ca":false},{"name":"W. Robert McMaster","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01774473063152404,"gpt":0.3016462179299022,"spread":0.2839014872983782,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001036795,0.0002537711,0.0005163199,0.0002292313,0.00007811138,0.00003544978,0.000147428,0.0002692098,0.0002563644],"category_scores_gemma":[0.0004367444,0.0002291801,0.0001099809,0.0003307079,0.0003182225,0.00007172728,0.0001422448,0.0003714397,0.0001680954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007720287,"about_ca_system_score_gemma":0.00002423329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001824143,"about_ca_topic_score_gemma":0.00002739521,"domain_scores_codex":[0.9980238,0.0001156603,0.0003671392,0.000611263,0.0003355507,0.0005466002],"domain_scores_gemma":[0.9992527,0.00006966176,0.0000638635,0.0003124468,0.0001036587,0.0001976928],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001322878,0.0001997189,0.04571154,0.00006640209,0.00009011914,0.0007872687,0.0001169271,3.651823e-7,0.9505479,0.00006681299,0.001101173,0.001179472],"study_design_scores_gemma":[0.001427034,0.0002673558,0.1202181,0.00004873272,0.00005167622,0.0004323437,0.00005241935,0.0001644089,0.876406,0.0002881124,0.0003938733,0.0002499684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891053,0.006668326,0.0001987003,0.002815147,0.00007224248,0.0003806797,0.000007855003,0.00005869919,0.0006930821],"genre_scores_gemma":[0.9978728,0.0005757897,0.0004598037,0.0006163967,0.00005624214,0.00005617417,0.00002955538,0.00002400074,0.0003092718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07450652,"threshold_uncertainty_score":0.9345693,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972854128","doi":"10.1016/j.molbiopara.2006.10.011","title":"Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":237,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; Structural Genomics Consortium","funders":"Canadian Institutes of Health Research; Wellcome Trust; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Plasmodium falciparum; Genome; Apicomplexa; Structural genomics; Heterologous expression; Cryptosporidium parvum; Gene; Plasmodium (life cycle); Cryptosporidium; Computational biology; Toxoplasma gondii; Genetics; Recombinant DNA; Microbiology; Malaria; Parasite hosting; Biochemistry; Protein structure","authors":[{"name":"Masoud Vedadi","is_ca":true},{"name":"J. Lew","is_ca":true},{"name":"J.D. Artz","is_ca":true},{"name":"Mehrnaz Amani","is_ca":true},{"name":"Yong Zhao","is_ca":true},{"name":"Aiping Dong","is_ca":true},{"name":"Gregory A. Wasney","is_ca":true},{"name":"Mian Gao","is_ca":true},{"name":"T. Hills","is_ca":true},{"name":"S. Brokx","is_ca":true},{"name":"Wei Qiu","is_ca":true},{"name":"Sujata Sharma","is_ca":true},{"name":"Angelina Diassiti","is_ca":true},{"name":"Zahoor Alam","is_ca":true},{"name":"M. Melone","is_ca":true},{"name":"A. M. Mulichak","is_ca":false},{"name":"Amy K. Wernimont","is_ca":true},{"name":"James E. Bray","is_ca":false},{"name":"P. Loppnau","is_ca":true},{"name":"Olga Plotnikova","is_ca":true},{"name":"Kate J. Newberry","is_ca":true},{"name":"E. Sundararajan","is_ca":true},{"name":"Simon Houston","is_ca":true},{"name":"Sue Walker","is_ca":true},{"name":"W. Tempel","is_ca":true},{"name":"Alexey Bochkarev","is_ca":true},{"name":"I. Kozieradzki","is_ca":true},{"name":"A.M. Edwards","is_ca":true},{"name":"C.H. Arrowsmith","is_ca":true},{"name":"David S. Roos","is_ca":false},{"name":"Kevin C. Kain","is_ca":true},{"name":"Raymond Hui","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006043979581614876,"gpt":0.2544529669765445,"spread":0.2484089873949296,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008108231,0.0002132737,0.0004302336,0.00009781161,0.0001348785,0.000007864791,0.0001124518,0.0004528422,0.00004662288],"category_scores_gemma":[0.00004907644,0.0001693957,0.00003790319,0.00008377048,0.001490052,0.00002509328,0.0003068247,0.0002722985,0.000005903912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009889733,"about_ca_system_score_gemma":0.00001521956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007913173,"about_ca_topic_score_gemma":0.000007298495,"domain_scores_codex":[0.9986302,0.0001812002,0.0003001291,0.0004566267,0.00003103114,0.0004008649],"domain_scores_gemma":[0.9995887,0.00007153561,0.00009502094,0.0001601122,0.00004221196,0.00004240227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001281055,0.00003089602,0.01327401,0.00003814444,0.00006821332,0.00001054235,0.00007109468,3.391202e-7,0.9852242,0.0009653593,0.00006013301,0.0001289446],"study_design_scores_gemma":[0.001178147,0.0002443616,0.04014887,0.00001250248,0.00002550532,0.0002984496,0.00004672336,0.000004083694,0.9536507,0.003914332,0.0003013295,0.000175024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903336,0.008601897,0.0001033701,0.0003041156,0.00005955051,0.0002808693,0.00004372699,0.00003219237,0.0002406586],"genre_scores_gemma":[0.99913,0.00003751252,0.0005178103,0.00001707545,0.000009221616,0.00001840651,0.0001334297,0.00001268618,0.0001239349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03157355,"threshold_uncertainty_score":0.6907758,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004182243","doi":"10.1016/j.molbiopara.2006.11.009","title":"Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: The Leishmania genome is constitutively expressed","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Vancouver Coastal Health Research Institute; Vancouver Coastal Health","funders":"Canadian Institutes of Health Research","keywords":"Amastigote; Biology; Leishmania infantum; Leishmania; DNA microarray; Gene; Gene expression profiling; Gene expression; Axenic; Leishmania major; Cell biology; Proteomics; Molecular biology; Genetics; Leishmaniasis; Visceral leishmaniasis; Parasite hosting","authors":[{"name":"Kirk Ryan. Leifso","is_ca":true},{"name":"Gabriela Cohen‐Freue","is_ca":true},{"name":"N. Dogra","is_ca":true},{"name":"Angus Murray","is_ca":true},{"name":"W. Robert McMaster","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01322019858490425,"gpt":0.2820526023126854,"spread":0.2688324037277812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002107177,0.0002965818,0.0008457805,0.0002504968,0.0001733135,0.00004123885,0.0001430791,0.0002031646,0.00001988127],"category_scores_gemma":[0.0001701524,0.0002073824,0.0001223442,0.0003339169,0.001684725,0.0000451483,0.0003109351,0.0002831685,0.000001921237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002747129,"about_ca_system_score_gemma":0.00008068277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001744363,"about_ca_topic_score_gemma":0.000008267039,"domain_scores_codex":[0.9980444,0.0001370618,0.0004607948,0.0006699457,0.0002800038,0.0004077581],"domain_scores_gemma":[0.9990125,0.0001227859,0.0001738488,0.0003522692,0.0001318039,0.0002068148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002847663,0.00008317152,0.1078541,0.0001624855,0.0006947215,0.00006923421,0.0001456707,0.000005376942,0.8901145,0.0002346006,0.000291377,0.00005996856],"study_design_scores_gemma":[0.001338718,0.0002005806,0.5696003,0.00005549928,0.0009441096,0.00006898418,0.0000913869,0.0003593385,0.4266131,0.0002225166,0.0002858573,0.0002196324],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917876,0.004498686,0.0009751913,0.001502674,0.00001367717,0.0008585104,0.00008683385,0.00002807626,0.0002487779],"genre_scores_gemma":[0.9982207,0.0002791803,0.0009973901,0.0002869914,0.00004947649,0.00006456801,0.00003869018,0.00001930311,0.00004371868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4635015,"threshold_uncertainty_score":0.8456807,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109803080","doi":"10.1016/s0166-6851(00)00270-x","title":"Episomal and stable expression of the luciferase reporter gene for quantifying Leishmania spp. infections in macrophages and in animal models","year":2000,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":178,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Cambridge Institute for Medical Research, University of Cambridge","keywords":"Biology; Luciferase; Reporter gene; Leishmania; Gene; Recombinant DNA; Leishmania major; Kinetoplastida; Bioreporter; Genome; Amastigote; Molecular biology; Parasite hosting; Gene expression; Transfection; Genetics; Protozoal disease; Immunology","authors":[{"name":"Gaétan Roy","is_ca":true},{"name":"Carole Dumas","is_ca":true},{"name":"Denis Séréno","is_ca":true},{"name":"Ying Wu","is_ca":true},{"name":"Ajay Singh","is_ca":true},{"name":"Michel J. Tremblay","is_ca":true},{"name":"Marc Ouellette","is_ca":true},{"name":"Martin Olivier","is_ca":true},{"name":"Barbara Papadopoulou","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02859340060408314,"gpt":0.331346744342117,"spread":0.3027533437380338,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001460569,0.0001091524,0.0003038306,0.00007373151,0.00005171418,0.000009199801,0.00003700722,0.0001161585,0.000008665575],"category_scores_gemma":[0.0001143002,0.00007863267,0.00003568833,0.0001128616,0.0002441382,0.00004159126,0.00007772403,0.000141058,1.622611e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001461174,"about_ca_system_score_gemma":0.00002106797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000111145,"about_ca_topic_score_gemma":0.00004459443,"domain_scores_codex":[0.9990597,0.00006166834,0.0002562577,0.0002989829,0.00009495833,0.0002284509],"domain_scores_gemma":[0.9996494,0.00007343895,0.00003842146,0.0001449527,0.00003356936,0.0000602232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003740271,0.0001029389,0.2183287,0.00009237394,0.00001331886,0.00007393778,0.00006277356,0.000007419364,0.7805741,0.0000250007,0.00005840385,0.0002870475],"study_design_scores_gemma":[0.001597298,0.0002195603,0.2080187,0.0000865291,0.00002679845,0.0003350904,0.00004400833,0.0008111933,0.7882896,0.0004481387,0.00003148195,0.00009153646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958057,0.002919479,0.0001077516,0.0006287896,0.00001115193,0.0003992646,0.00000631542,0.000006066854,0.0001154876],"genre_scores_gemma":[0.998839,0.000365891,0.0006243507,0.00007657598,0.00001251177,0.00004403305,0.000004546073,0.000009305663,0.00002374339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01030995,"threshold_uncertainty_score":0.3206547,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089342315","doi":"10.1016/j.molbiopara.2005.12.009","title":"Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":158,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Wellcome Trust; Purdue University","keywords":"Biology; Amastigote; DNA microarray; Axenic; Leishmania mexicana; Gene expression profiling; Gene; Gene expression; Transcriptome; Leishmania; Genome; Microarray; Genetics; Molecular biology; Parasite hosting","authors":[{"name":"Timothy R. Holzer","is_ca":false},{"name":"W. Robert McMaster","is_ca":true},{"name":"James Forney","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01179554720912764,"gpt":0.2744385748696263,"spread":0.2626430276604987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001612512,0.0003892197,0.0007438813,0.0003231477,0.0001075118,0.00004916943,0.0001497679,0.0002900678,0.00001473886],"category_scores_gemma":[0.0003136311,0.0003303041,0.00007000964,0.0002851639,0.0004724476,0.00009286108,0.0002794823,0.0004490241,0.000002966467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001171792,"about_ca_system_score_gemma":0.00004507746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001219389,"about_ca_topic_score_gemma":0.00002630755,"domain_scores_codex":[0.997265,0.0002211392,0.0006361068,0.0009300828,0.0003224217,0.0006252636],"domain_scores_gemma":[0.9992042,0.0001093097,0.0001475398,0.0002615106,0.0000906724,0.0001867719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003468017,0.0002764164,0.09607924,0.0001857559,0.00001922945,0.0001243803,0.00008661232,0.000003320946,0.9022793,0.00001454785,0.0004308377,0.0001535248],"study_design_scores_gemma":[0.002063497,0.0001843802,0.1366206,0.0003417615,0.00002651766,0.00008755951,0.00009223451,0.00008514938,0.8599363,0.0002314776,0.0000541268,0.0002763934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869152,0.008611658,0.002376275,0.0009858158,0.0000389986,0.0009484489,0.00002980643,0.00004893838,0.00004487997],"genre_scores_gemma":[0.9948962,0.0002575839,0.004033821,0.0000721641,0.00007919235,0.0001208864,0.0004587286,0.00003916338,0.00004222824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04234306,"threshold_uncertainty_score":0.9999149,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064854096","doi":"10.1016/j.molbiopara.2007.07.011","title":"Variant proteins of the Plasmodium falciparum RIFIN family show distinct subcellular localization and developmental expression patterns","year":2007,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Malaria Research and Control","field":"Medicine","cited_by":136,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Medical Research Council; National Institutes of Health; International Development Research Centre","keywords":"Biology; Plasmodium falciparum; Antigenic variation; Parasite hosting; Gene; Antigen; Subcellular localization; Genetics; Protein family; Intracellular parasite; Gene family; Cell biology; Gene expression; Malaria; Immunology","authors":[{"name":"Michaela Petter","is_ca":false},{"name":"Malin Haeggström","is_ca":false},{"name":"Ayman Khattab","is_ca":false},{"name":"Victor Fernandez","is_ca":false},{"name":"Mo‐Quen Klinkert","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009794680470201501,"gpt":0.2641743864739627,"spread":0.2543797060037612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001763981,0.0001223555,0.0002176074,0.00004427041,0.00006197432,0.000008519653,0.00007809321,0.0001673741,0.00001332177],"category_scores_gemma":[0.0001300077,0.00007990135,0.00004579896,0.00008639299,0.0001915003,0.00001383948,0.0001040673,0.0001626099,0.000001144583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002558252,"about_ca_system_score_gemma":0.00005117007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006890629,"about_ca_topic_score_gemma":0.00001056296,"domain_scores_codex":[0.9989988,0.00006214147,0.0002164773,0.0002513187,0.000206773,0.0002645408],"domain_scores_gemma":[0.9995794,0.00004127029,0.00004875527,0.0001387012,0.00004586303,0.0001460327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004412694,0.00009093615,0.06560221,0.00008276915,0.00002879097,0.0001237776,0.00003807816,2.581538e-7,0.93274,0.0003157932,0.00007673562,0.0004593738],"study_design_scores_gemma":[0.001234479,0.0001325939,0.1116977,0.00006334029,0.00003485365,0.0001654839,0.00007292866,0.0002758919,0.885954,0.0001028567,0.0001775002,0.00008838549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9228864,0.0003912162,0.07536373,0.0005800003,0.00003135914,0.0004222731,0.000008142797,0.000009734214,0.0003071898],"genre_scores_gemma":[0.9991899,0.00001036523,0.0004750301,0.0002153128,0.00002340001,0.00001578235,0.00003295389,0.000009050549,0.00002825148],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0763035,"threshold_uncertainty_score":0.3258282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981697985","doi":"10.1016/s0166-6851(00)00187-0","title":"Amplification of the ABC transporter gene PGPA and increased trypanothione levels in potassium antimonyl tartrate (SbIII) resistant Leishmania tarentolae","year":2000,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":131,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Burroughs Wellcome Fund","keywords":"Meglumine antimoniate; Leishmania tropica; Biology; Cutaneous leishmaniasis; Microbiology; Leishmania; Intracellular; Amastigote; Leishmaniasis; Biochemistry; Parasite hosting; Immunology","authors":[{"name":"Anass Haimeur","is_ca":false},{"name":"Christian Brochu","is_ca":true},{"name":"Paul-André Genest","is_ca":true},{"name":"Barbara Papadopoulou","is_ca":true},{"name":"Marc Ouellette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01536222723924191,"gpt":0.2863379321376905,"spread":0.2709757048984486,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000183608,0.0001739533,0.0004268344,0.00008221188,0.00006294773,0.0000113632,0.0001062504,0.000176844,0.00005346886],"category_scores_gemma":[0.00007771781,0.000124275,0.00007474697,0.0002331181,0.0005091085,0.00003160168,0.00003031359,0.0002394546,0.000002545344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002603621,"about_ca_system_score_gemma":0.00005021814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002667941,"about_ca_topic_score_gemma":0.00004652852,"domain_scores_codex":[0.9985361,0.0001454998,0.0003829153,0.0003976367,0.0002345962,0.0003032861],"domain_scores_gemma":[0.9993969,0.00005382987,0.00006410118,0.0003034536,0.00006794497,0.0001138382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004990913,0.0001491042,0.07297913,0.00007842648,0.0000570027,0.00007447715,0.0001059838,4.945366e-7,0.9250025,0.00006224516,0.0001340452,0.0008574708],"study_design_scores_gemma":[0.001017552,0.00009180813,0.569893,0.00003847136,0.00004864862,0.00005901007,0.00002039185,0.00002836746,0.4284645,0.0001224677,0.0001326227,0.00008310299],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944466,0.001627931,0.00008273488,0.002954876,0.00001859798,0.000382718,0.00002967353,0.00001330668,0.0004436011],"genre_scores_gemma":[0.9989614,0.0002189112,0.0003429059,0.00034163,0.00002084272,0.00002328335,0.00003027473,0.00001399773,0.00004677335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4969139,"threshold_uncertainty_score":0.5067788,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2056639505","doi":"10.1016/s0166-6851(00)00290-5","title":"A new developmentally regulated gene family in Leishmania amastigotes encoding a homolog of amastin surface proteins","year":2000,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Medical Research Council","keywords":"Biology; Amastigote; Gene; Leishmania; Homology (biology); Gene family; Gene expression; Cell biology; Leishmania mexicana; Genetics; Fusion protein; Molecular biology; Parasite hosting; Recombinant DNA","authors":[{"name":"Ying Wu","is_ca":true},{"name":"Youssef El Fakhry","is_ca":true},{"name":"Denis Séréno","is_ca":true},{"name":"Samira Tamar","is_ca":true},{"name":"Barbara Papadopoulou","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01485279627601194,"gpt":0.2877243721449314,"spread":0.2728715758689194,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001481528,0.0002101,0.0005536397,0.0001132774,0.00003858834,0.000009555884,0.0001253092,0.000207943,0.00007041912],"category_scores_gemma":[0.0001478447,0.0001879556,0.00006726597,0.0003572102,0.000287168,0.00002816109,0.00009375926,0.0002559476,0.00001103199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005383365,"about_ca_system_score_gemma":0.0001584417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003518247,"about_ca_topic_score_gemma":0.00001573254,"domain_scores_codex":[0.998392,0.00008460807,0.00040302,0.0004461391,0.0002390348,0.0004351848],"domain_scores_gemma":[0.9994334,0.00006071935,0.00005616526,0.0002014659,0.00006641934,0.0001818584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004238259,0.0001179631,0.05185181,0.00006139819,0.00008599591,0.0003923455,0.0001264125,0.00001020568,0.9437689,0.00003216289,0.0004092715,0.002719733],"study_design_scores_gemma":[0.001642924,0.000292278,0.1889035,0.000109329,0.00002886006,0.0002465472,0.00003780725,0.00006885118,0.8082333,0.0001441224,0.0001282662,0.000164224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943269,0.002449296,0.0004154643,0.000966674,0.00001580019,0.00048748,0.000003520248,0.00003325452,0.001301552],"genre_scores_gemma":[0.9774863,0.0001678201,0.02191938,0.0001630735,0.00001855859,0.00001409159,0.00002190145,0.00001807651,0.0001908236],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1370517,"threshold_uncertainty_score":0.7664608,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2027713759","doi":"10.1016/j.molbiopara.2008.12.012","title":"Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum","year":2009,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Burroughs Wellcome Fund","keywords":"Amastigote; Biology; Axenic; Leishmania infantum; Intracellular; Gene expression; Gene expression profiling; Cell biology; Leishmania; Intracellular parasite; Gene; Biochemistry; Genetics; Visceral leishmaniasis; Leishmaniasis; Parasite hosting","authors":[{"name":"Annie Rochette","is_ca":true},{"name":"Frédéric Raymond","is_ca":true},{"name":"Jacques Corbeil","is_ca":true},{"name":"Marc Ouellette","is_ca":true},{"name":"Barbara Papadopoulou","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01814630995555942,"gpt":0.3180489106196892,"spread":0.2999026006641297,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001283361,0.0001743193,0.0006566729,0.0001126722,0.00004154131,0.000006047627,0.0000844184,0.0001578077,0.000005493028],"category_scores_gemma":[0.0001106099,0.0001327777,0.00007189647,0.0001397321,0.0004993012,0.00003869459,0.0001000122,0.0002330784,0.000001495795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001356722,"about_ca_system_score_gemma":0.00003052189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004950689,"about_ca_topic_score_gemma":4.20733e-7,"domain_scores_codex":[0.9987683,0.00005549268,0.0003679856,0.0003184999,0.0002145606,0.0002751119],"domain_scores_gemma":[0.9993433,0.00005553945,0.0001266086,0.0002023632,0.0001334175,0.0001387517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003807429,0.0001304665,0.005695181,0.0001456617,0.00007297214,0.00004617602,0.0002037051,0.000001336361,0.9925933,0.0003830969,0.00005496522,0.0002923644],"study_design_scores_gemma":[0.001097811,0.0008343047,0.03415905,0.00009571546,0.00005948044,0.00007432535,0.0001475188,0.000107076,0.9626039,0.0006565624,0.00004939366,0.0001148436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924747,0.005258036,0.0008237337,0.0005679994,0.00001379992,0.0003584701,0.00001069854,0.00001401905,0.0004785799],"genre_scores_gemma":[0.9976292,0.0001371785,0.002074704,0.00007416095,0.00002024423,0.000007216433,0.00003883654,0.000007602433,0.00001086348],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02998942,"threshold_uncertainty_score":0.5414517,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113270134","doi":"10.1016/j.molbiopara.2009.05.002","title":"RNA interference targeting leucine aminopeptidase blocks hatching of Schistosoma mansoni eggs","year":2009,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; U.S. Public Health Service; Universidad de la República Uruguay","keywords":"Biology; RNA interference; Schistosoma mansoni; Schistosoma japonicum; Gene knockdown; Gene; RNA; Molecular biology; Genetics; Helminths; Schistosomiasis; Immunology","authors":[{"name":"Gabriel Rinaldi","is_ca":false},{"name":"Maria E. Morales","is_ca":false},{"name":"Yousef N. Alrefaei","is_ca":false},{"name":"Martín Cancela","is_ca":false},{"name":"Estela Castillo","is_ca":false},{"name":"John P. Dalton","is_ca":true},{"name":"José F. Tort","is_ca":false},{"name":"Paul J. Brindley","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007186585606668141,"gpt":0.2897581406644584,"spread":0.2825715550577902,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006957094,0.0001937217,0.0003583026,0.00009642643,0.0001015098,0.000009644054,0.000176218,0.0002651396,0.0001190008],"category_scores_gemma":[0.00008768634,0.0001735832,0.000103268,0.0000908943,0.0002420853,0.00004272954,0.00006092127,0.0003595699,0.0000358855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001546047,"about_ca_system_score_gemma":0.00001854123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000946457,"about_ca_topic_score_gemma":0.000003047724,"domain_scores_codex":[0.9988771,0.00007955723,0.000340971,0.0003522435,0.00002838265,0.0003217497],"domain_scores_gemma":[0.9995135,0.0000685069,0.0001228219,0.0001958483,0.00005582825,0.00004348281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001458898,0.0001333023,0.002311229,0.000009674039,0.00006782339,0.00002548395,0.0001446689,0.00000185253,0.9924017,0.001129652,0.001119628,0.002509098],"study_design_scores_gemma":[0.0006179576,0.0003266741,0.004771745,0.00004944838,0.0000540011,0.0002477705,0.00006831354,0.00001433833,0.9916251,0.000446253,0.001587044,0.0001913079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905366,0.004805464,0.001424722,0.0007903029,0.0001804959,0.00009684978,0.00001255262,0.000038105,0.002114912],"genre_scores_gemma":[0.9988616,0.00004694375,0.0003943999,0.0003765341,0.00002073282,0.000004361098,0.00007664596,0.000007657507,0.0002111497],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008324979,"threshold_uncertainty_score":0.7078517,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1973443900","doi":"10.1016/j.molbiopara.2005.01.006","title":"Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp.","year":2005,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; Université Laval","funders":"Canadian Institutes of Health Research; Wellcome Trust; Burroughs Wellcome Fund","keywords":"Biology; Amastigote; Gene; Gene family; Genetics; Leishmania; Leishmania infantum; Gene expression; Regulation of gene expression; Untranslated region; Cell biology; Messenger RNA; Leishmaniasis; Parasite hosting; Visceral leishmaniasis","authors":[{"name":"Annie Rochette","is_ca":true},{"name":"François McNicoll","is_ca":true},{"name":"J Girard","is_ca":true},{"name":"Marie Breton","is_ca":true},{"name":"Éric Leblanc","is_ca":true},{"name":"Michel G. Bergeron","is_ca":true},{"name":"Barbara Papadopoulou","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0161509617792763,"gpt":0.2916180113949157,"spread":0.2754670496156394,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001616399,0.0001248583,0.0002982369,0.00008719047,0.00003790687,0.000007644997,0.00004041145,0.0001277417,0.000009629209],"category_scores_gemma":[0.0001129014,0.0001168715,0.00002493969,0.000149971,0.0001243431,0.00004485736,0.00009108161,0.0001220083,0.000003459777],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004967051,"about_ca_system_score_gemma":0.00003881468,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002041881,"about_ca_topic_score_gemma":0.00001069746,"domain_scores_codex":[0.9989772,0.00005436011,0.0002724423,0.0002883015,0.0001611445,0.0002465409],"domain_scores_gemma":[0.9996914,0.00002473139,0.00005998006,0.00008643512,0.00006098918,0.00007642547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001338585,0.00009810009,0.08863546,0.00005310753,0.00002733206,0.00002945733,0.0001199654,0.000001157175,0.9102031,0.00004047349,0.00002043946,0.0006375656],"study_design_scores_gemma":[0.0007989637,0.00006553959,0.34673,0.00002924162,0.00001112536,0.0000681308,0.00003015535,0.0002415615,0.6518465,0.00000893077,0.000100171,0.0000696343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961203,0.0006266909,0.001921215,0.0007536302,0.00001147427,0.0003979728,0.000008763041,0.00001405442,0.0001459044],"genre_scores_gemma":[0.9915295,0.0001374566,0.008006571,0.0001453652,0.00002961438,0.00001476361,0.00009029964,0.00001114559,0.00003524379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2583566,"threshold_uncertainty_score":0.4765883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106598473","doi":"10.1016/j.molbiopara.2006.08.007","title":"Ivermectin selection on β-tubulin: Evidence in Onchocerca volvulus and Haemonchus contortus","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":99,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Ste. Anne's Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Onchocerca volvulus; Ivermectin; Biology; Haemonchus contortus; Onchocerciasis; Anthelmintic; Nematode; Parasite hosting; Drug resistance; Lymphatic filariasis; Allele frequency; Genetics; Allele; Immunology; Gene; Helminths; Filariasis; Zoology; Ecology","authors":[{"name":"J.K.L. Eng","is_ca":true},{"name":"William J. Blackhall","is_ca":false},{"name":"Mike Y. Osei‐Atweneboana","is_ca":true},{"name":"Catherine Bourguinat","is_ca":true},{"name":"D. Galazzo","is_ca":true},{"name":"Robin N. Beech","is_ca":true},{"name":"Thomas R. Unnasch","is_ca":false},{"name":"K. Awadzi","is_ca":false},{"name":"George W. Lubega","is_ca":false},{"name":"Roger K. Prichard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02737199813005013,"gpt":0.3294810571335715,"spread":0.3021090590035213,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110206,0.0001642633,0.0002428356,0.00009520686,0.00005734256,0.00002392339,0.0000518393,0.0002372231,0.00004070126],"category_scores_gemma":[0.000131239,0.0001570331,0.00004365985,0.0001294028,0.0001191207,0.00004175128,0.00002995184,0.000235988,0.00002406541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005500368,"about_ca_system_score_gemma":0.00002148856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007547088,"about_ca_topic_score_gemma":0.0001017655,"domain_scores_codex":[0.9988755,0.0001265881,0.0002308071,0.0004080751,0.00009343623,0.0002656236],"domain_scores_gemma":[0.999611,0.000118692,0.00004790265,0.0001072932,0.00003388992,0.00008121939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009141667,0.000147083,0.08400167,0.0000265583,0.00002079394,0.0003235146,0.00003528529,0.000006110092,0.9077738,0.001152904,0.0008822499,0.00471588],"study_design_scores_gemma":[0.004193639,0.002983659,0.5280928,0.0001675659,0.00008687852,0.002224525,0.00004424938,0.003248179,0.4519579,0.002382565,0.003759655,0.0008583486],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955139,0.00101753,0.0004180904,0.0006537898,0.0001063556,0.0001829129,0.000001951951,0.00005186022,0.002053567],"genre_scores_gemma":[0.9991381,0.00002553506,0.0000596846,0.0005919057,0.00008315674,0.00002897329,0.000005332399,0.00001046843,0.0000568922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4558159,"threshold_uncertainty_score":0.6403623,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2079669085","doi":"10.1016/j.molbiopara.2006.01.008","title":"Identification of developmentally-regulated proteins in Leishmania panamensis by proteome profiling of promastigotes and axenic amastigotes","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"Wellcome Trust","keywords":"Proteome; Biology; Amastigote; Proteomics; Peptide mass fingerprinting; Biochemistry; Leishmania mexicana; Heat shock protein; Leishmania; Hypothetical protein; Two-dimensional gel electrophoresis; Molecular biology; Gene","authors":[{"name":"Sue Walker","is_ca":false},{"name":"Juan-José Vasquez","is_ca":false},{"name":"María Adelaida Gómez","is_ca":false},{"name":"Jolyne Drummelsmith","is_ca":true},{"name":"Richard Burchmore","is_ca":false},{"name":"Isabelle Girard","is_ca":true},{"name":"Marc Ouellette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007302974190445929,"gpt":0.2714224192131705,"spread":0.2641194450227245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001754308,0.0001516721,0.0004434768,0.0001515696,0.00002832979,0.000007412265,0.00006066717,0.000142047,0.000002754604],"category_scores_gemma":[0.000208309,0.0001326975,0.00003643066,0.0002524625,0.0004895195,0.0000315552,0.00008264662,0.0001320585,5.568473e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002880531,"about_ca_system_score_gemma":0.00004785497,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00013309,"about_ca_topic_score_gemma":0.00001069634,"domain_scores_codex":[0.998612,0.00006202434,0.0005242036,0.0003492734,0.0002114367,0.000241024],"domain_scores_gemma":[0.9994847,0.00004157209,0.0001496138,0.0001394245,0.0001276483,0.00005709422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001245391,0.000168206,0.1633838,0.0003145427,0.00005206673,0.00001481084,0.00003387341,6.76687e-7,0.8355301,0.0001065324,0.00003934202,0.0002315554],"study_design_scores_gemma":[0.0007473078,0.0001586594,0.1885194,0.00008256708,0.00002861337,0.0000370312,0.00003455722,0.0001021034,0.8098934,0.0003026956,0.000003962858,0.00008966459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961665,0.001815444,0.0003516662,0.0005659306,0.000007708917,0.001024071,0.000009576775,0.00001535717,0.0000437131],"genre_scores_gemma":[0.9964081,0.00003035116,0.00337084,0.00001442542,0.000007096892,0.0000886362,0.00005000389,0.00001265332,0.00001788615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02563667,"threshold_uncertainty_score":0.5411248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972806542","doi":"10.1016/s0166-6851(00)00234-6","title":"Putrescine and spermidine transport in Leishmania","year":2000,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Polyamine Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Putrescine; Spermidine; Amastigote; Polyamine; Biology; Leishmania; Biochemistry; Leishmania mexicana; Leishmania donovani; Leishmaniasis; Enzyme; Visceral leishmaniasis; Immunology; Parasite hosting","authors":[{"name":"Mireille Basselin","is_ca":true},{"name":"Graham H. Coombs","is_ca":false},{"name":"Michael P. Barrett","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004295110198498876,"gpt":0.2520532967940254,"spread":0.2477581865955265,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000533093,0.00014009,0.0001777472,0.00003527647,0.00002966025,0.000006177628,0.00008818664,0.0001640765,0.0000355142],"category_scores_gemma":[0.000009970676,0.0001320076,0.00003399586,0.00008744119,0.0001760378,0.000002338852,0.00002809815,0.00008494876,0.0000056717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002231219,"about_ca_system_score_gemma":0.00001193435,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003886798,"about_ca_topic_score_gemma":0.0000194606,"domain_scores_codex":[0.9991481,0.00002487607,0.0001673285,0.000389048,0.00004872314,0.0002219195],"domain_scores_gemma":[0.9996809,0.000005235887,0.0000170668,0.0001872746,0.00001068787,0.00009887995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006110018,0.00005973062,0.01639348,0.000008596075,0.00001100874,0.00001951272,0.000009733437,0.000001995058,0.978458,0.000245376,0.000152892,0.004578533],"study_design_scores_gemma":[0.001089404,0.0001079271,0.1047033,0.000007323207,0.00002856206,0.0001981535,0.000008969542,0.00003381781,0.8692566,0.000432816,0.02385696,0.0002762111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994719,0.003127228,0.0001500933,0.0005796516,0.00001541207,0.0001212469,0.00001241164,0.000008712625,0.001266222],"genre_scores_gemma":[0.9981978,0.000613322,0.0003008966,0.0004526821,0.00006195176,0.00002132103,0.0001142697,0.00001154965,0.0002262226],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1092015,"threshold_uncertainty_score":0.5383114,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076741399","doi":"10.1016/j.molbiopara.2012.03.002","title":"Discovery of factors linked to antimony resistance in Leishmania panamensis through differential proteome analysis","year":2012,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"Wellcome Trust","keywords":"Biology; Proteome; Leishmania; Differential (mechanical device); Antimony; Computational biology; Resistance (ecology); Genetics; Parasite hosting; Ecology; World Wide Web","authors":[{"name":"Sue Walker","is_ca":false},{"name":"Rafael Góngora","is_ca":false},{"name":"Juan-José Vasquez","is_ca":false},{"name":"Jolyne Drummelsmith","is_ca":true},{"name":"Richard Burchmore","is_ca":false},{"name":"Gaétan Roy","is_ca":true},{"name":"Marc Ouellette","is_ca":true},{"name":"María Adelaida Gómez","is_ca":false},{"name":"Nancy Gore Saravia","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02086814164066798,"gpt":0.3299970373836497,"spread":0.3091288957429817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001015176,0.0001965964,0.0007834277,0.0002434995,0.0000353691,0.00001169756,0.000100756,0.0001688022,0.00001214238],"category_scores_gemma":[0.0002373799,0.0001534308,0.0001768226,0.0007123669,0.0002450365,0.00007737688,0.0001149267,0.000206448,0.000002909631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004681933,"about_ca_system_score_gemma":0.0000246299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002075522,"about_ca_topic_score_gemma":0.000101143,"domain_scores_codex":[0.9984178,0.00009816127,0.0003517749,0.0003645883,0.000276028,0.0004916516],"domain_scores_gemma":[0.9993349,0.00007769756,0.00007033427,0.000306034,0.00006822986,0.0001428198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002568681,0.0001892166,0.4581558,0.00006942392,0.0004150137,0.00002305474,0.0003228736,3.030787e-7,0.5402656,0.0001828325,0.0001068087,0.00001222522],"study_design_scores_gemma":[0.000461082,0.00009606304,0.673613,0.0000291311,0.0002845351,0.000003192442,0.00007823639,0.000004455151,0.3251884,0.00005712116,0.00006367531,0.0001210948],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955852,0.001194573,0.001539809,0.0008251008,0.00003692868,0.0004326162,0.00001478444,0.00001422655,0.0003567853],"genre_scores_gemma":[0.9984756,0.00007074413,0.001161612,0.000113143,0.00003549429,0.00002782714,0.00003656687,0.00001357037,0.00006542283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2154573,"threshold_uncertainty_score":0.6256727,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032885521","doi":"10.1016/s0166-6851(01)00236-5","title":"Cysteine protease isoforms from Trypanosoma cruzi, cruzipain 2 and cruzain, present different substrate preference and susceptibility to inhibitors","year":2001,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Trypanosoma cruzi; Biology; Cysteine protease; Chagas disease; Gene isoform; Protease; Cysteine; Biochemistry; Substrate (aquarium); Enzyme; Virology; Gene; Parasite hosting","authors":[{"name":"Ana Paula C. A. Lima","is_ca":false},{"name":"Flavia C. G. Reis","is_ca":false},{"name":"Carole Serveau","is_ca":false},{"name":"Gilles Lalmanach","is_ca":false},{"name":"Luis Juliano","is_ca":false},{"name":"Robert Ménard","is_ca":true},{"name":"Thierry Vernet","is_ca":true},{"name":"David Y. Thomas","is_ca":true},{"name":"Andrew C. Storer","is_ca":true},{"name":"Júlio Scharfstein","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02269915648764194,"gpt":0.3073545460935444,"spread":0.2846553896059025,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001583134,0.0002664733,0.0004304434,0.00009396982,0.0001053424,0.00005090073,0.0001013343,0.0002256061,0.00004754014],"category_scores_gemma":[0.0003198826,0.0001997463,0.0000587334,0.0001652911,0.0004362826,0.00004771795,0.0002038711,0.0002869274,0.000008400796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003793187,"about_ca_system_score_gemma":0.00004212401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000238512,"about_ca_topic_score_gemma":0.00004783016,"domain_scores_codex":[0.998134,0.00009232234,0.0003346163,0.0007199054,0.0002335106,0.0004856117],"domain_scores_gemma":[0.9985441,0.0001083809,0.00005009055,0.0004178341,0.00009335341,0.000786239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005322843,0.0002281029,0.06720532,0.00006004835,0.00005146048,0.00008108935,0.00007141773,1.110416e-7,0.9282261,0.00008194022,0.0005268713,0.002935293],"study_design_scores_gemma":[0.001123997,0.0006806196,0.6312164,0.00004400574,0.00004207265,0.0001622104,0.00005820381,0.00005517271,0.3648171,0.0007920574,0.000827283,0.0001808598],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899238,0.001652634,0.0006335164,0.006350143,0.00002768265,0.001108667,0.0000489174,0.0000484278,0.0002062503],"genre_scores_gemma":[0.9985187,0.0002139301,0.0004048501,0.0004133864,0.0001038246,0.0001350143,0.00009339378,0.00001675727,0.0001001247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5640111,"threshold_uncertainty_score":0.8145416,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2094143702","doi":"10.1016/j.molbiopara.2005.01.021","title":"A comparison of genetic polymorphism in populations of Onchocerca volvulus from untreated- and ivermectin-treated patients","year":2005,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":81,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Ivermectin; Onchocerca volvulus; Biology; Gene; Genetics; Allele; Onchocerciasis; Polymorphism (computer science); Allele frequency; Immunology; Zoology","authors":[{"name":"J.K.L. Eng","is_ca":true},{"name":"Roger K. Prichard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01181432092383139,"gpt":0.330780159906112,"spread":0.3189658389822806,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001624499,0.00008967135,0.000209527,0.00004158438,0.0000258396,0.000001828215,0.0000571269,0.0001393934,0.0001125464],"category_scores_gemma":[0.00002461635,0.00008317133,0.00002552996,0.0001017115,0.0002634577,0.00002328094,0.00005573962,0.00008469513,0.000009585225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002456958,"about_ca_system_score_gemma":0.000002888532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001631873,"about_ca_topic_score_gemma":0.0002917473,"domain_scores_codex":[0.999332,0.00005021908,0.0002405805,0.0002048702,0.00005214784,0.0001201438],"domain_scores_gemma":[0.9997329,0.00003727598,0.00008086726,0.00009209909,0.000007756785,0.00004907423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004616033,0.0001625443,0.7441695,0.000001180516,0.00001033111,0.000001276351,0.00008181671,0.00002679619,0.2538776,0.00001400864,0.00003652139,0.001572175],"study_design_scores_gemma":[0.0003884933,0.00007766981,0.8221172,0.000005773521,0.0000252676,0.000003482444,0.00000921812,0.0003640332,0.1767788,0.00013114,0.0000353284,0.00006355216],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989128,0.000354279,0.0000577238,0.00008064073,0.00002292004,0.0000856969,0.00001993584,0.000005421952,0.0004605608],"genre_scores_gemma":[0.999155,0.000009385841,0.0007248375,0.00004216936,0.000005321191,0.000003588596,0.00004599311,0.00000356216,0.00001011852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07794768,"threshold_uncertainty_score":0.3391628,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2021520530","doi":"10.1016/j.molbiopara.2007.11.017","title":"P-glycoprotein-like protein, a possible genetic marker for ivermectin resistance selection in Onchocerca volvulus","year":2008,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":81,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brandon University; McGill University","funders":"River Foundation","keywords":"Onchocerca volvulus; Onchocerciasis; Biology; Ivermectin; Single-nucleotide polymorphism; Genotype; Genetics; Polymorphism (computer science); Allele; Gene; Immunology; Zoology","authors":[{"name":"Catherine Bourguinat","is_ca":true},{"name":"Bernadette F. Ardelli","is_ca":true},{"name":"Sébastien D. S. Pion","is_ca":false},{"name":"Joseph Kamgno","is_ca":false},{"name":"Jacques Gardon","is_ca":false},{"name":"B. O. L. Duke","is_ca":false},{"name":"Michel Boussinesq","is_ca":false},{"name":"Roger K. Prichard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01705997949009606,"gpt":0.2963429823464744,"spread":0.2792830028563783,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000937235,0.0001844766,0.0002674151,0.0001046388,0.0001193305,0.0000127693,0.00008469336,0.0002688033,0.00005831137],"category_scores_gemma":[0.0001137103,0.0001848946,0.00008694817,0.0002064958,0.0001288737,0.0000332748,0.0000310215,0.0001991091,0.00002184954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006395521,"about_ca_system_score_gemma":0.00005518852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009880985,"about_ca_topic_score_gemma":0.00005182817,"domain_scores_codex":[0.9986649,0.0001159712,0.0002827335,0.0004641279,0.00009944475,0.0003727988],"domain_scores_gemma":[0.9995954,0.00003764683,0.00006449152,0.0001329614,0.00007037976,0.000099104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00192037,0.0001364951,0.01360598,0.00006457903,0.00003505969,0.0002409235,0.00005685502,0.000001863681,0.9820099,0.0001739086,0.001046362,0.0007076286],"study_design_scores_gemma":[0.008177414,0.002154493,0.2939862,0.0001273311,0.0000746765,0.003217587,0.00004140018,0.002039855,0.6683227,0.002671567,0.01800918,0.001177532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923861,0.0006086633,0.004732089,0.0003661784,0.00007767434,0.0008414015,0.00000520294,0.00006186786,0.0009208336],"genre_scores_gemma":[0.9964903,0.00001043927,0.001976272,0.00036083,0.00006013504,0.000451504,0.000007244909,0.00002183006,0.0006214507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3136872,"threshold_uncertainty_score":0.7539783,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055353730","doi":"10.1016/j.molbiopara.2012.09.007","title":"Wherever I may roam: Protein and membrane trafficking in P. falciparum-infected red blood cells","year":2012,"lang":"en","type":"review","venue":"Molecular and Biochemical Parasitology","topic":"Malaria Research and Control","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Rhoptry; Apicoplast; Biology; Cell biology; Plasmodium falciparum; Vacuole; Organelle; Compartment (ship); Cellular compartment; Parasite hosting; Plasmodium (life cycle); Cytosol; Malaria; Cell; Apicomplexa; Immunology; Biochemistry; Cytoplasm","authors":[{"name":"Marcel Deponte","is_ca":false},{"name":"Heinrich C. Hoppe","is_ca":false},{"name":"Lee M","is_ca":false},{"name":"Alexander G. Maier","is_ca":false},{"name":"Dave Richard","is_ca":true},{"name":"Melanie Rug","is_ca":false},{"name":"Tobias Spielmann","is_ca":false},{"name":"Jude M. Przyborski","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02176413440149629,"gpt":0.3266274051984718,"spread":0.3048632707969755,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000266657,0.0004639828,0.00188399,0.0002370157,0.00003438603,0.00002552932,0.0001328343,0.0009414002,0.00008451103],"category_scores_gemma":[0.0001252729,0.0003580573,0.0002362518,0.000266609,0.0002079558,0.00002581899,0.0001172286,0.0008943452,0.00001491503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003205885,"about_ca_system_score_gemma":0.0001430246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003929296,"about_ca_topic_score_gemma":0.000006649637,"domain_scores_codex":[0.99751,0.000362075,0.0005306809,0.0006503348,0.0002167178,0.0007302311],"domain_scores_gemma":[0.99898,0.00009109123,0.0001265298,0.0003395674,0.00004198819,0.0004207523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000565464,0.001126886,0.0003599887,0.03548364,0.001396726,0.002874442,0.00005036519,9.527664e-8,0.5463024,0.0004370394,0.0003695895,0.4110334],"study_design_scores_gemma":[0.0150198,0.001472993,0.0005078622,0.01529515,0.009568801,0.005162106,0.00002012227,0.00005675024,0.1623205,0.0001022435,0.7879215,0.002552134],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04159291,0.9557049,0.00002144016,0.0004168438,0.00004194222,0.001785775,0.00001091628,0.00003556323,0.0003897398],"genre_scores_gemma":[0.1763151,0.8223073,0.0003235935,0.0001491158,0.0001559472,0.0003209496,0.0001648345,0.00006753603,0.0001956051],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.787552,"threshold_uncertainty_score":0.9998872,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2082986841","doi":"10.1016/s0166-6851(03)00201-9","title":"Selection at a γ-aminobutyric acid receptor gene in Haemonchus contortus resistant to avermectins/milbemycins","year":2003,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":65,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Haemonchus contortus; Anthelmintic; Avermectin; Receptor; Chloride channel; Allele; GABA receptor; Gene; Ivermectin; gamma-Aminobutyric acid; Nematode; GABAA receptor; Acetylcholine receptor; Genetics; Molecular biology; Biochemistry; Anatomy; Zoology","authors":[{"name":"William J. Blackhall","is_ca":true},{"name":"Roger K. Prichard","is_ca":true},{"name":"Robin N. Beech","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01792533318914236,"gpt":0.3057807534466304,"spread":0.287855420257488,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001560739,0.0002189858,0.0003374522,0.0001519638,0.00009058748,0.00001772638,0.00007743396,0.0002903606,0.0002112124],"category_scores_gemma":[0.0002749457,0.0002162428,0.00008253505,0.000299515,0.00006716851,0.00002678983,0.00004523679,0.0002066863,0.0001504483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001887386,"about_ca_system_score_gemma":0.00003592949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000866492,"about_ca_topic_score_gemma":0.00007279173,"domain_scores_codex":[0.998338,0.0002433768,0.0003257181,0.0005295965,0.0001223855,0.0004408931],"domain_scores_gemma":[0.9994332,0.00004615165,0.0000558486,0.0001874605,0.00004993005,0.0002274058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007512078,0.0001005287,0.01270843,0.00001212749,0.00003077662,0.00017154,0.00007074996,0.000001609245,0.9844506,0.0003163736,0.0008979223,0.0004881837],"study_design_scores_gemma":[0.001327385,0.0007434333,0.01472836,0.00001175502,0.00002391924,0.0006905566,0.0000203438,0.00006151105,0.9694781,0.00007435186,0.01253138,0.0003089068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952208,0.0004432267,0.001072027,0.0003236725,0.0002368325,0.000306523,0.000009442724,0.00006248715,0.002324971],"genre_scores_gemma":[0.9983466,0.00001416694,0.0004722077,0.0008671048,0.00004224593,0.00007936938,0.00001506648,0.00002023215,0.0001429613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01497245,"threshold_uncertainty_score":0.8818127,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070784101","doi":"10.1016/s0166-6851(01)00400-5","title":"A novel Schistosoma mansoni G protein-coupled receptor is responsive to histamine","year":2002,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Canadian Institutes of Health Research","keywords":"G protein-coupled receptor; Biology; Complementary DNA; Molecular biology; Receptor; Peptide sequence; Biochemistry; Histamine; HEK 293 cells; Histamine receptor; Amino acid; Biogenic amine; Epitope; Cell biology; Genetics; Gene; Antibody; Pharmacology","authors":[{"name":"Fadi F. Hamdan","is_ca":false},{"name":"Mark Abramovitz","is_ca":false},{"name":"Aisha Mousa","is_ca":true},{"name":"Jinling Xie","is_ca":true},{"name":"Yves Durocher","is_ca":true},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01193901533641356,"gpt":0.2689785235667671,"spread":0.2570395082303535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00004926618,0.0002390694,0.0003399201,0.00014249,0.0001508845,0.00001602536,0.0001817236,0.0003644999,0.001299244],"category_scores_gemma":[0.000149347,0.0002234499,0.0001097288,0.0001714065,0.0002321792,0.0000329198,0.0000956264,0.0003181616,0.001394403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004390035,"about_ca_system_score_gemma":0.0000145574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001034867,"about_ca_topic_score_gemma":0.000006383802,"domain_scores_codex":[0.9986547,0.00006593724,0.000274022,0.0005295379,0.00004039951,0.0004354547],"domain_scores_gemma":[0.9993902,0.00006289341,0.00007036438,0.0003046745,0.00008102694,0.00009085011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002823266,0.0002130664,0.0002903662,0.000008983563,0.000110736,0.00002070891,0.0001916462,2.380025e-7,0.9773171,0.0005497772,0.02053446,0.0004806184],"study_design_scores_gemma":[0.0009701581,0.0003381921,0.0008797888,0.00002632331,0.00004143016,0.0004135395,0.00003407675,0.00001885146,0.8926229,0.00004402594,0.1043218,0.000288898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878421,0.003208561,0.001515144,0.005721932,0.000254833,0.0003701111,0.00006364218,0.00006202312,0.0009616978],"genre_scores_gemma":[0.9907878,0.00002435912,0.001319202,0.002106515,0.00003077268,0.00008826307,0.00005967851,0.0000207976,0.005562631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08469413,"threshold_uncertainty_score":0.9996137,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009903504","doi":"10.1016/s0166-6851(03)00039-2","title":"Low-complexity segments in Plasmodium falciparum proteins are primarily nucleic acid level adaptations","year":2003,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Nucleic acid; Biology; Amino acid; Plasmodium falciparum; Function (biology); Biochemistry; Genetics; Computational biology","authors":[{"name":"Huimin Xue","is_ca":false},{"name":"Donald R. Forsdyke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02727325375445651,"gpt":0.2743287824082192,"spread":0.2470555286537627,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000174342,0.0002825156,0.000313479,0.00007769551,0.00009540033,0.00002664441,0.0002062121,0.0004132232,0.00002825036],"category_scores_gemma":[0.000197239,0.0002817559,0.0001009201,0.0001356674,0.0002213834,0.000005914349,0.00009775268,0.0001682837,0.0000177008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002301754,"about_ca_system_score_gemma":0.00007044101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002291663,"about_ca_topic_score_gemma":0.00004035424,"domain_scores_codex":[0.9981951,0.000215758,0.0003154101,0.0006457072,0.0001508516,0.000477174],"domain_scores_gemma":[0.999308,0.00001336145,0.0001097527,0.0003605722,0.00005116897,0.0001570785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001068886,0.0001866079,0.003140638,0.00003050553,0.00003399893,0.00003237408,0.00002078506,0.000005134612,0.9946549,0.001202299,0.0001517271,0.0004341465],"study_design_scores_gemma":[0.0008270295,0.0001662986,0.006609794,0.00002447328,0.00001823579,0.00006424494,0.0000470483,0.00001380913,0.9890888,0.00192762,0.0008801979,0.0003324932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853027,0.0008686891,0.01206329,0.0002809399,0.0001022097,0.0004641473,0.00003701162,0.00001697021,0.0008640361],"genre_scores_gemma":[0.9924822,0.00004415118,0.006635567,0.0004896229,0.00003135167,0.0001245643,0.00008596086,0.00002957353,0.00007700439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007179498,"threshold_uncertainty_score":0.9999635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025147963","doi":"10.1016/j.molbiopara.2009.06.003","title":"Investigation of a dopamine receptor in Schistosoma mansoni: Functional studies and immunolocalization","year":2009,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Cholinesterase and Neurodegenerative Diseases","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; Princeton University","keywords":"Biology; G protein-coupled receptor; Receptor; Dopamine receptor; Molecular biology; Agonist; Cell biology; Dopaminergic; Dopamine; Biochemistry; Endocrinology","authors":[{"name":"Amira Taman","is_ca":false},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02413006497034957,"gpt":0.3068183480135279,"spread":0.2826882830431783,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002546206,0.0000770737,0.0001857205,0.00007019596,0.00001521749,0.000002175439,0.00001171518,0.00005843439,0.000002098629],"category_scores_gemma":[0.00008678704,0.00006500408,0.00002064984,0.00009729914,0.0001570615,0.00001981906,0.00001080842,0.00005426939,3.75371e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000121426,"about_ca_system_score_gemma":0.00002197214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003962873,"about_ca_topic_score_gemma":8.279224e-7,"domain_scores_codex":[0.99952,0.00003449577,0.0001517512,0.0001672773,0.00005577405,0.00007069779],"domain_scores_gemma":[0.9997925,0.00002177747,0.00003220188,0.00005855937,0.00005347882,0.00004148343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002603006,0.0000342209,0.04522144,0.00004213284,0.00001757303,0.00001258299,0.00006693153,9.871802e-7,0.9533558,0.0001464015,0.00009987333,0.0007417781],"study_design_scores_gemma":[0.0009061212,0.0002316676,0.175769,0.00005878713,0.00003429283,0.00005323741,0.00002672025,0.00004066117,0.8225197,0.0002744064,0.00002952806,0.00005597275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988762,0.009724274,0.0002171988,0.001159609,0.00002269093,0.000094927,0.000001610893,0.000008185925,0.000009482067],"genre_scores_gemma":[0.9987882,0.0002668218,0.0002069847,0.0006440928,0.00002013424,0.000004958135,0.00005316346,0.00000319449,0.0000124967],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1308361,"threshold_uncertainty_score":0.265079,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069036440","doi":"10.1016/s0166-6851(01)00356-5","title":"Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: mitochondrion-derived carbon metabolism in microsporidia","year":2001,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Burroughs Wellcome Fund","keywords":"Biology; Microsporidia; Pyruvate dehydrogenase complex; Nosema; Mitochondrion; Biochemistry; Organelle; Cell biology; Microbiology; Enzyme","authors":[{"name":"Naomi M. Fast","is_ca":true},{"name":"Patrick J. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005474396638381038,"gpt":0.235344466908033,"spread":0.2298700702696519,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001188719,0.0002610178,0.0004872745,0.00009150116,0.0000990304,0.00001314377,0.0001698106,0.000448237,0.00003102975],"category_scores_gemma":[0.0001337372,0.0002080377,0.00008009053,0.0002330907,0.0007525331,0.00002757732,0.0001072127,0.0003367059,0.00001136439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001559546,"about_ca_system_score_gemma":0.00004877376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002325906,"about_ca_topic_score_gemma":0.0001905556,"domain_scores_codex":[0.998529,0.0001744108,0.0003989503,0.0004340782,0.00003813828,0.0004253876],"domain_scores_gemma":[0.9991012,0.0003394372,0.0001185779,0.0003124571,0.00006807503,0.00006026688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001365506,0.0001149189,0.1006292,0.000006331362,0.0001101434,0.0001013314,0.0001801894,0.00000163377,0.898019,0.0002437546,0.0002156214,0.0002413403],"study_design_scores_gemma":[0.001532114,0.00005511744,0.09386912,0.00002451921,0.0001298208,0.0002132961,0.0000796533,0.000006376965,0.9015638,0.0003803483,0.001926095,0.0002197083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9765844,0.02199323,0.00007485721,0.0005456481,0.0003262303,0.0002489329,0.00007883408,0.00001893328,0.0001289735],"genre_scores_gemma":[0.9984349,0.0008300049,0.0001013095,0.0003606776,0.00003615353,0.00001911667,0.0001818598,0.00001680264,0.00001916028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02185055,"threshold_uncertainty_score":0.8483531,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2085577839","doi":"10.1016/j.molbiopara.2005.05.006","title":"Genomic organization and effects of ivermectin selection on Onchocerca volvulus P-glycoprotein","year":2005,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Onchocerca volvulus; Biology; Ivermectin; Glycoprotein; Onchocerciasis; Selection (genetic algorithm); Genetics; P-glycoprotein; Computational biology; Virology; Immunology; Zoology; Drug resistance","authors":[{"name":"Bernadette F. Ardelli","is_ca":true},{"name":"Sean B. Guerriero","is_ca":true},{"name":"Roger K. Prichard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002724297699553537,"gpt":0.2427997880463378,"spread":0.2400754903467842,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003142829,0.0001255873,0.0001997417,0.00008009448,0.00008123174,0.000006237606,0.00005151398,0.0002484812,0.00006893759],"category_scores_gemma":[0.0000934139,0.0001171148,0.00003039073,0.0001061763,0.0001388649,0.00002470669,0.00003583226,0.0001831878,0.00006093137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002626875,"about_ca_system_score_gemma":0.00001426407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003883201,"about_ca_topic_score_gemma":0.000004333393,"domain_scores_codex":[0.9993287,0.00007222046,0.0001577925,0.0002531444,0.00001885698,0.0001692884],"domain_scores_gemma":[0.9996853,0.00008629551,0.00006769971,0.00008758421,0.00004779465,0.00002528859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000947275,0.0001007537,0.01068521,0.00001961743,0.00007367373,0.00000264212,0.00006250897,0.000003922215,0.9853671,0.0007789916,0.0004228062,0.002388004],"study_design_scores_gemma":[0.0006968605,0.000290777,0.02935143,0.00001583726,0.00005029729,0.0002439515,0.00000737173,0.00001444407,0.9678373,0.00007632379,0.001303097,0.0001123405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997025,0.001629281,0.0005382537,0.0002263235,0.0001184613,0.000165657,0.000003760517,0.00002884994,0.0002644735],"genre_scores_gemma":[0.9993305,0.00006292693,0.0001593542,0.0002339864,0.00002724734,0.000007941282,0.0000381533,0.00001070108,0.0001292243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01866622,"threshold_uncertainty_score":0.4775802,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071985346","doi":"10.1016/j.molbiopara.2009.02.011","title":"A dopamine-gated ion channel (HcGGR3*) from Haemonchus contortus is expressed in the cervical papillae and is associated with macrocyclic lactone resistance","year":2009,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":53,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; University of Ontario Institute of Technology","funders":"","keywords":"Biology; Haemonchus contortus; Caenorhabditis elegans; Ion channel; Protein subunit; Gene; Complementary DNA; Chloride channel; Parasite hosting; Nematode; Genetics; Molecular biology; Cell biology; Receptor","authors":[{"name":"Vijayaraghava T.S. Rao","is_ca":true},{"name":"Salma Z. Siddiqui","is_ca":true},{"name":"Roger K. Prichard","is_ca":true},{"name":"Sean G. Forrester","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01585662985058847,"gpt":0.2874296967880206,"spread":0.2715730669374321,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001038385,0.000232231,0.0003849816,0.00005080556,0.00007552136,0.00004146047,0.0001290899,0.0003161875,0.00003710975],"category_scores_gemma":[0.00008050146,0.0001658987,0.00005243144,0.0001721734,0.0001570411,0.00003536544,0.0000265109,0.0002754212,0.000006719115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002642402,"about_ca_system_score_gemma":0.0000141865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001648475,"about_ca_topic_score_gemma":0.00009025411,"domain_scores_codex":[0.9985343,0.0002219622,0.0002662714,0.0004765844,0.0001621003,0.0003387872],"domain_scores_gemma":[0.9993719,0.0001426324,0.00008880068,0.000239464,0.00004533189,0.0001118241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00180745,0.0002657135,0.004623347,0.00001248887,0.0001061063,0.001089821,0.0007207152,1.713592e-7,0.9888688,0.00007372297,0.001634723,0.0007969419],"study_design_scores_gemma":[0.01192511,0.001893112,0.5003315,0.0002330992,0.0002366751,0.0004675979,0.0003571901,0.0007571569,0.4748513,0.002566101,0.005239659,0.001141556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920391,0.001337675,0.0001476874,0.005359184,0.00003086593,0.0002545325,0.00005234329,0.00004523671,0.0007333989],"genre_scores_gemma":[0.9932557,0.00004803278,0.00002473705,0.00651207,0.00003983815,0.00002247167,0.00005574261,0.00001153914,0.00002988826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5140175,"threshold_uncertainty_score":0.6765155,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990559461","doi":"10.1016/s0166-6851(03)00102-6","title":"Haemonchus contortus: HcGluCla expressed in Xenopus oocytes forms a glutamate-gated ion channel that is activated by ibotenate and the antiparasitic drug ivermectin","year":2003,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Haemonchus contortus; Biology; Homomeric; Xenopus; Chloride channel; Nematode; Glutamate receptor; Ivermectin; Ion channel; Pharmacology; Antiparasitic agent; Caenorhabditis elegans; Biochemistry; Zoology; Gene; Receptor; Ecology","authors":[{"name":"Sean G. Forrester","is_ca":true},{"name":"Roger K. Prichard","is_ca":true},{"name":"Joseph A. Dent","is_ca":true},{"name":"Robin N. Beech","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006474411597857951,"gpt":0.26866647604167,"spread":0.262192064443812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000189934,0.0002493157,0.0003444569,0.00004486536,0.00017185,0.00002952533,0.0001523714,0.000261775,0.00008500771],"category_scores_gemma":[0.00009068893,0.0001729309,0.00006156947,0.0001621687,0.0008545713,0.0001023507,0.00007738017,0.0003006747,0.00002825195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004868712,"about_ca_system_score_gemma":0.000008062524,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004415167,"about_ca_topic_score_gemma":0.00003213938,"domain_scores_codex":[0.9984701,0.0002531733,0.0002307695,0.0005085392,0.0001103507,0.0004270429],"domain_scores_gemma":[0.9994038,0.0001725504,0.00009797346,0.0001973858,0.000009293769,0.000118969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004289209,0.00009652165,0.04009474,0.000005770614,0.00005158439,0.00004245071,0.0003461624,0.000005286847,0.9578375,0.0001275747,0.0007835396,0.0001799341],"study_design_scores_gemma":[0.002015975,0.00005035783,0.01657029,0.00001537431,0.000041147,0.0001601696,0.0001347034,0.0002381888,0.9779775,0.001420257,0.00113275,0.0002433191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962224,0.0008113802,0.0001035679,0.001066646,0.00008797235,0.0003201823,0.0000223695,0.00003036224,0.001335069],"genre_scores_gemma":[0.9986055,0.0001779425,0.00003601711,0.0009833983,0.00000603863,0.00003427971,0.00003215447,0.00001199367,0.0001126207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02352445,"threshold_uncertainty_score":0.7051919,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1980026820","doi":"10.1016/j.molbiopara.2012.01.005","title":"Leishmania donovani mitochondrial iron superoxide dismutase A is released into the cytosol during miltefosine induced programmed cell death","year":2012,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Programmed cell death; Miltefosine; Superoxide dismutase; Superoxide; Oxidative stress; Leishmania donovani; Mitochondrion; Cell biology; Reactive oxygen species; Cytosol; Molecular biology; Biochemistry; Apoptosis; Immunology; Visceral leishmaniasis; Leishmaniasis","authors":[{"name":"Fitsum Getachew","is_ca":true},{"name":"Lashitew Gedamu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01679013767019699,"gpt":0.3049240427175932,"spread":0.2881339050473962,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001466861,0.0003469955,0.0005237204,0.00009953471,0.0002268596,0.00003701546,0.000210116,0.0003021688,0.00002867537],"category_scores_gemma":[0.000303707,0.000235287,0.0001727364,0.0002427551,0.0003619459,0.00007062777,0.0002653759,0.0005588341,0.00003826807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000927872,"about_ca_system_score_gemma":0.00005726836,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003111558,"about_ca_topic_score_gemma":0.000009170966,"domain_scores_codex":[0.9976344,0.0001585579,0.0003698952,0.0005435739,0.000390336,0.0009032565],"domain_scores_gemma":[0.9987445,0.00009975192,0.00007551383,0.0005319396,0.0001029263,0.0004453638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006994597,0.0004113361,0.05026454,0.0001462785,0.0001120002,0.0001516515,0.0006167068,4.339207e-8,0.9462861,0.00004130682,0.0008570969,0.0004134133],"study_design_scores_gemma":[0.002818785,0.0003658204,0.04206231,0.00003278878,0.0001917043,0.00026521,0.0001761538,0.0000122512,0.9529648,0.00004266218,0.0008094123,0.0002581401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900899,0.003448458,0.00006803583,0.005062365,0.0001402295,0.0009009421,0.000005550198,0.00006665548,0.0002178732],"genre_scores_gemma":[0.9972074,0.0001238011,0.001117838,0.0008682061,0.0003704415,0.0001610745,0.00004454845,0.00004265298,0.00006403779],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008202231,"threshold_uncertainty_score":0.9594725,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049669046","doi":"10.1016/j.molbiopara.2011.07.007","title":"Comparison of molecular and McMaster microscopy techniques to confirm the presence of naturally acquired strongylid nematode infections in sheep","year":2011,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Australian Research Council; Murdoch University; McMaster University","keywords":"Biology; Nematode; Microscopy; Zoology; Computational biology; Pathology; Ecology; Medicine","authors":[{"name":"Joshua P.A. Sweeny","is_ca":false},{"name":"Ian Robertson","is_ca":false},{"name":"Una Ryan","is_ca":false},{"name":"Caroline Jacobson","is_ca":false},{"name":"Rob Woodgate","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0294221684978392,"gpt":0.3669558284777546,"spread":0.3375336599799154,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001001012,0.0001387027,0.0003364293,0.00008858519,0.00002867491,0.000008033509,0.0001290861,0.0001759412,0.00003891498],"category_scores_gemma":[0.00008165249,0.0001080053,0.00005445193,0.0001318268,0.0002987002,0.00002781975,0.0001085185,0.0001360047,0.000001850465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000077925,"about_ca_system_score_gemma":0.00001458744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002262485,"about_ca_topic_score_gemma":0.00001918483,"domain_scores_codex":[0.9990145,0.0001267771,0.0003458845,0.0002425303,0.00008052401,0.0001898078],"domain_scores_gemma":[0.9995264,0.00006183871,0.00009031469,0.0001915196,0.00006213568,0.00006782502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002536536,0.0001420221,0.03693695,0.00003761755,0.0000289401,0.00001460191,0.0003547753,6.180478e-7,0.9608988,0.0006316868,0.00006617976,0.0006341361],"study_design_scores_gemma":[0.0003308477,0.0006035767,0.01243964,0.00003170011,0.00002669574,0.000103017,0.00009355184,0.00007645441,0.9858426,0.000176913,0.0001632927,0.0001117363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948583,0.0004883865,0.003055854,0.0002247581,0.0000406666,0.0003453713,0.00000542522,0.00002067639,0.0009605164],"genre_scores_gemma":[0.9989132,0.000004552332,0.0007586022,0.0002566731,0.000006104193,0.0000433075,0.000002716059,0.0000090616,0.000005791298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02494375,"threshold_uncertainty_score":0.4404328,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060924771","doi":"10.1016/j.molbiopara.2010.12.001","title":"Glutamate-mediated signaling in Schistosoma mansoni: A novel glutamate receptor is expressed in neurons and the female reproductive tract","year":2010,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Glutamate receptor; Metabotropic glutamate receptor 1; Metabotropic glutamate receptor; Metabotropic glutamate receptor 6; Receptor; Cell biology; Metabotropic glutamate receptor 7; Metabotropic glutamate receptor 5; Schistosoma mansoni; Molecular biology; Immunology; Biochemistry","authors":[{"name":"Amira Taman","is_ca":true},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00770870312291353,"gpt":0.2813358373488737,"spread":0.2736271342259601,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002089812,0.0001602813,0.0002367434,0.00005233285,0.00008463789,0.00001589029,0.0001508105,0.0002253831,0.0001235193],"category_scores_gemma":[0.0002219022,0.000121834,0.00004123955,0.0001632876,0.0008983128,0.00006545422,0.000105436,0.000527942,0.00004091598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001980416,"about_ca_system_score_gemma":0.000008323089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004103927,"about_ca_topic_score_gemma":0.0001078117,"domain_scores_codex":[0.9987507,0.000111993,0.000235552,0.0005482888,0.0000730112,0.0002804655],"domain_scores_gemma":[0.9994485,0.0001806661,0.00006766178,0.0002259166,0.000005818973,0.00007139755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002285033,0.0001205797,0.1508528,0.000003005202,0.000007025374,0.00001978816,0.000347639,0.000005963537,0.8481382,0.00007697717,0.00004423876,0.0001553243],"study_design_scores_gemma":[0.00171398,0.00005296341,0.3531722,0.00001189095,0.00001692985,0.0001578271,0.00007878726,0.0003025951,0.6425832,0.0003208894,0.001371198,0.0002175392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996497,0.0001575912,0.00004245075,0.002497161,0.000123614,0.0002275407,0.00001968089,0.00001602393,0.0004188964],"genre_scores_gemma":[0.9988958,0.00003209726,0.0004025571,0.0005564693,0.000020519,0.00004199858,0.00001319861,0.000008847399,0.00002851733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.205555,"threshold_uncertainty_score":0.4968247,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006154954","doi":"10.1016/s0166-6851(00)00327-3","title":"The major cell surface glycoprotein procyclin is a receptor for induction of a novel form of cell death in African trypanosomes in vitro","year":2000,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Glycoprotein; In vitro; Cell biology; Cell; Receptor; Human cell; Cell surface receptor; Programmed cell death; Molecular biology; Biochemistry; Apoptosis","authors":[{"name":"Terry W. Pearson","is_ca":true},{"name":"Robert P. Beecroft","is_ca":true},{"name":"Susan C. Welburn","is_ca":false},{"name":"Stefan Ruepp","is_ca":false},{"name":"Isabel Roditi","is_ca":false},{"name":"Kuo‐Yuan Hwa","is_ca":false},{"name":"Paul T. Englund","is_ca":false},{"name":"Clive Wells","is_ca":false},{"name":"Noel B. Murphy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01529510059450928,"gpt":0.3041778110401788,"spread":0.2888827104456695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003053376,0.0001066812,0.000288045,0.00007300789,0.00002813002,0.000004548582,0.0001035854,0.0001731563,0.00002077069],"category_scores_gemma":[0.00008071468,0.00007912971,0.0000736005,0.0002653702,0.0001864887,0.00001964108,0.0000236526,0.0001804877,0.000001463926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003652692,"about_ca_system_score_gemma":0.00007511931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000157489,"about_ca_topic_score_gemma":0.000009658948,"domain_scores_codex":[0.9989952,0.00002759873,0.0003345046,0.0002385694,0.000124492,0.0002796747],"domain_scores_gemma":[0.9994901,0.0001021962,0.00006645588,0.0002025856,0.00006022401,0.00007844221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00155664,0.0004692266,0.0008741166,0.0001103283,0.00001228876,0.000001704914,0.0001297184,3.907973e-7,0.9956059,0.00003710756,0.0001285028,0.001074034],"study_design_scores_gemma":[0.002513943,0.0003222643,0.01041372,0.00002158952,0.00001474236,0.00001565517,0.00009948041,0.0001203393,0.9856823,0.0001934187,0.0005311854,0.00007134589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954899,0.0006882282,0.0001692853,0.002302099,0.00001011353,0.0008531002,0.00005163923,0.00000512713,0.0004305211],"genre_scores_gemma":[0.9951877,0.00009850475,0.004340375,0.00005103125,0.00001263342,0.00009425233,0.00003005662,0.0000101238,0.0001753507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009923628,"threshold_uncertainty_score":0.3226816,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2072793236","doi":"10.1016/j.molbiopara.2012.11.008","title":"The functional role of a serotonin transporter in Schistosoma mansoni elucidated through immunolocalization and RNA interference (RNAi)","year":2012,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Serotonin; Serotonergic; Schistosoma mansoni; Neurotransmitter; Serotonin transporter; Viral tegument; Immunofluorescence; Nervous system; Flatworm; Cell biology; Central nervous system; Anatomy; Endocrinology; Neuroscience; Immunology; Antibody; Biochemistry; Virology; Receptor; Helminths","authors":[{"name":"Nicholas Patocka","is_ca":true},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007452023173171546,"gpt":0.2585461834524924,"spread":0.2510941602793209,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007427829,0.0001239616,0.0001894916,0.00004310068,0.00009148648,0.000006554321,0.00008018329,0.0002169789,0.00004366779],"category_scores_gemma":[0.00002427623,0.00009306107,0.00004203048,0.00008593921,0.0003892583,0.00006862169,0.00003544587,0.0002245323,0.00001206742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001636855,"about_ca_system_score_gemma":0.0000186076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001527431,"about_ca_topic_score_gemma":0.00002215328,"domain_scores_codex":[0.9991888,0.0000944687,0.0002565688,0.0001798462,0.0000222314,0.0002580418],"domain_scores_gemma":[0.9996778,0.00007521037,0.00007068363,0.0001255381,0.00003113595,0.00001962601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002752502,0.00009245607,0.06478522,0.000006437558,0.00007135847,0.000001334247,0.000338434,7.450141e-7,0.9302748,0.003127816,0.00006866269,0.0009575155],"study_design_scores_gemma":[0.0006155195,0.00008502302,0.1416916,0.00002252488,0.00003467341,0.00017142,0.0001813922,0.00001391767,0.853135,0.0004968615,0.003437966,0.0001140801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806508,0.01701275,0.001322921,0.0002456275,0.0001576494,0.0001259603,0.000009776533,0.00001230221,0.0004621574],"genre_scores_gemma":[0.9994636,0.000222681,0.00005205096,0.00008414112,0.000008743515,0.00002543633,0.0000723898,0.000006625644,0.00006437885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07713974,"threshold_uncertainty_score":0.379492,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992729272","doi":"10.1016/j.molbiopara.2004.02.014","title":"Molecular and phylogenetic characterization of syntaxin genes from parasitic protozoa","year":2004,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Syntaxin; Gene; Genetics; Conserved sequence; Phylogenetic tree; Syntaxin 3; Phylogenetics; Membrane protein; Cell biology; Peptide sequence","authors":[{"name":"Joel B. Dacks","is_ca":true},{"name":"W. Ford Doolittle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004935309291996558,"gpt":0.228290068974632,"spread":0.2233547596826354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000588217,0.0002219229,0.0002742243,0.00004923719,0.0000406341,0.00001299021,0.0001084448,0.0003229081,0.000006695704],"category_scores_gemma":[0.0000198428,0.0002225883,0.00008108117,0.00007675002,0.0002767498,0.000003840355,0.00004370827,0.00008728581,0.000001781316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006961762,"about_ca_system_score_gemma":0.00003661737,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005233814,"about_ca_topic_score_gemma":0.000005965916,"domain_scores_codex":[0.9988111,0.00005438898,0.000280108,0.0005031864,0.0001158059,0.0002354419],"domain_scores_gemma":[0.9994792,0.000006175518,0.00009262896,0.0002501364,0.00005403875,0.0001178107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001172487,0.00007783576,0.01263317,0.00004184417,0.00006952509,0.00003278048,0.00002810132,0.000009946404,0.9862201,0.0002019759,5.860066e-7,0.00056685],"study_design_scores_gemma":[0.0008017544,0.000242128,0.01955593,0.00002374491,0.00007473584,0.00005079282,0.00001056192,0.00001571064,0.9781766,0.000587829,0.000222909,0.0002373125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9659868,0.002832896,0.03054382,0.0001589168,0.00004620261,0.0003481973,0.00003653183,0.00001139159,0.0000351764],"genre_scores_gemma":[0.9966906,0.0002511603,0.0006525742,0.0001805853,0.00004984651,0.00004033641,0.002107152,0.00002366679,0.000004119232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03070369,"threshold_uncertainty_score":0.9076887,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076375439","doi":"10.1016/j.molbiopara.2005.09.011","title":"Characterization of a half-size ATP-binding cassette transporter gene which may be a useful marker for ivermectin selection in Onchocerca volvulus","year":2005,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Helminth infection and control","field":"Veterinary","cited_by":41,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Onchocerca volvulus; Biology; Onchocerciasis; Ivermectin; Genetics; Gene; Allele; Immunology; Zoology","authors":[{"name":"Bernadette F. Ardelli","is_ca":true},{"name":"Sean B. Guerriero","is_ca":true},{"name":"Roger K. Prichard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01832672699723894,"gpt":0.3040132305419336,"spread":0.2856865035446947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001488596,0.0001690849,0.0003052168,0.0001090437,0.00004482633,0.00001223724,0.00006168467,0.000291232,0.0001007396],"category_scores_gemma":[0.0000729444,0.0001723161,0.0000879397,0.0002103824,0.00004732221,0.00006381898,0.00001359186,0.000157948,0.000005073029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000579878,"about_ca_system_score_gemma":0.00003053202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005215567,"about_ca_topic_score_gemma":0.00007237288,"domain_scores_codex":[0.998825,0.00008479863,0.0003629486,0.0003561987,0.00008824482,0.0002828029],"domain_scores_gemma":[0.9995888,0.00006354383,0.00009903721,0.00009487224,0.00008177192,0.00007195563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008438893,0.0001178969,0.03497208,0.00004005323,0.00005002972,0.00001654717,0.0001481598,0.00000179775,0.9628782,0.00003290071,0.00004063654,0.0008577717],"study_design_scores_gemma":[0.002010848,0.0003576706,0.1311624,0.0000222937,0.00007027046,0.0003002728,0.00001317018,0.001646394,0.8600737,0.00001603484,0.004083878,0.0002430429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933968,0.00003209404,0.004304837,0.001615788,0.00008458162,0.0003818326,0.00003061726,0.00003359085,0.0001198675],"genre_scores_gemma":[0.9986807,0.000008176097,0.0004160131,0.0005610186,0.00007930418,0.00008797007,0.00008436021,0.00002061523,0.00006191243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1028045,"threshold_uncertainty_score":0.7026846,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967039397","doi":"10.1016/s0166-6851(01)00382-6","title":"Glycosylphosphatidylinositol-anchored surface molecules of Trypanosoma congolense insect forms are developmentally regulated in the tsetse fly","year":2002,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Midgut; Biology; Trypanosoma brucei; Trypanosoma; Cell biology; Parasite hosting; Proteolysis; Biochemistry; Virology; Gene; Botany; Enzyme","authors":[{"name":"Peter Bütikofer","is_ca":false},{"name":"Erik Vassella","is_ca":false},{"name":"Monika Boschung","is_ca":false},{"name":"Christina Kunz Renggli","is_ca":false},{"name":"Reto Brun","is_ca":false},{"name":"Terry W. Pearson","is_ca":true},{"name":"Isabel Roditi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02074972654810672,"gpt":0.2846321715188406,"spread":0.2638824449707339,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002343651,0.000201267,0.0004043274,0.00009398308,0.00006407459,0.00001826758,0.000217256,0.0002300365,0.00005669059],"category_scores_gemma":[0.0001641896,0.0001418509,0.00009749572,0.0004482908,0.0003962544,0.00003828952,0.00005640397,0.0002810865,0.00001327102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003801239,"about_ca_system_score_gemma":0.00003715504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000367834,"about_ca_topic_score_gemma":0.00001511885,"domain_scores_codex":[0.9984477,0.00008834911,0.0004069971,0.0003641764,0.0002894001,0.0004034244],"domain_scores_gemma":[0.9991503,0.0001036881,0.0001031367,0.0003848583,0.0001032774,0.0001547102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002299769,0.0003354412,0.0251524,0.00005729371,0.00006958935,0.0002092689,0.0002216705,0.00000166576,0.9710442,0.0003531403,0.001772334,0.0005529956],"study_design_scores_gemma":[0.001441401,0.0002197143,0.4541204,0.00004622024,0.00002906824,0.0004270905,0.000129612,0.000154534,0.5427215,0.0001719933,0.0004048718,0.0001335945],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923093,0.002864278,0.00008813287,0.003250162,0.00002119835,0.0005068965,0.00002355235,0.00002373366,0.0009127847],"genre_scores_gemma":[0.9981273,0.0002624194,0.0007182055,0.0007266345,0.00001299309,0.00002822259,0.00006965305,0.00001570179,0.00003887111],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.428968,"threshold_uncertainty_score":0.5784512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1980885328","doi":"10.1016/j.molbiopara.2011.02.009","title":"Differential protein expression throughout the life cycle of Trypanosoma congolense, a major parasite of cattle in Africa","year":2011,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Genome British Columbia; University of Victoria","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Wellcome Trust","keywords":"Biology; Trypanosoma; Parasite hosting; Protozoan parasite; Protozoa; Protein expression; Cell biology; Genetics; Gene","authors":[{"name":"Brett A. Eyford","is_ca":true},{"name":"Tatsuya Sakurai","is_ca":false},{"name":"Derek Smith","is_ca":true},{"name":"Bianca C. Loveless","is_ca":true},{"name":"Christiane Hertz‐Fowler","is_ca":false},{"name":"John E. Donelson","is_ca":false},{"name":"Noboru Inoue","is_ca":false},{"name":"Terry W. Pearson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02408850235971347,"gpt":0.3149220335229933,"spread":0.2908335311632798,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001038886,0.000116227,0.0003284134,0.00007160311,0.00002385859,0.000003069616,0.0001385589,0.0001525392,0.0001152061],"category_scores_gemma":[0.0001764633,0.00007635246,0.0000825721,0.0001753617,0.0005172411,0.00001868649,0.00009015998,0.0001838564,0.000006577051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008019723,"about_ca_system_score_gemma":0.00005676133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008998559,"about_ca_topic_score_gemma":0.000004523067,"domain_scores_codex":[0.9989668,0.00007920278,0.000306631,0.0002278331,0.0001621047,0.0002573864],"domain_scores_gemma":[0.9993684,0.00004037654,0.00008615068,0.0003281055,0.00006667822,0.0001103253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004638794,0.0003414379,0.006354035,0.00006849753,0.00004070277,0.00001110108,0.000291701,7.286831e-8,0.991481,0.000526769,0.0002735292,0.0001472402],"study_design_scores_gemma":[0.0008165269,0.0001970371,0.2653036,0.00003720992,0.00002714682,0.00002383659,0.00006304782,0.00001140687,0.7330472,0.0003583773,0.00005973814,0.00005487025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958087,0.0008476608,0.0003582182,0.0005769334,0.00001562833,0.0004589538,0.00001920383,0.000008282729,0.001906423],"genre_scores_gemma":[0.9993373,0.00001378599,0.0004583886,0.00005953479,0.0000167147,0.00004372555,0.00001353867,0.000009825437,0.00004719992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2589496,"threshold_uncertainty_score":0.3113563,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091019954","doi":"10.1016/j.molbiopara.2014.11.001","title":"Loa loa and Onchocerca ochengi miRNAs detected in host circulation","year":2014,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Fonds Québécois de la Recherche sur la Nature et les Technologies; Canada Research Chairs; Wellcome Trust; Natural Sciences and Engineering Research Council of Canada; Bill and Melinda Gates Foundation","keywords":"Biology; Loa loa; Host (biology); Circulation (fluid dynamics); Microbiology; Virology; Computational biology; Zoology; Ecology; Filariasis; Helminths","authors":[{"name":"Lucienne Tritten","is_ca":true},{"name":"Maeghan O’Neill","is_ca":true},{"name":"Chuck Nutting","is_ca":false},{"name":"Samuel Wanji","is_ca":false},{"name":"Abdel Njouendoui","is_ca":false},{"name":"Fanny Fri Fombad","is_ca":false},{"name":"Jonas Kengne-Ouaffo","is_ca":false},{"name":"Charles D. Mackenzie","is_ca":false},{"name":"Timothy G. Geary","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005286162220472576,"gpt":0.2831573970675479,"spread":0.2778712348470753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000806313,0.0001153309,0.0001447879,0.00003926544,0.00005551623,0.000009730504,0.00007006154,0.0002159088,0.00009738772],"category_scores_gemma":[0.00008779068,0.0001082965,0.00002364623,0.0001089588,0.0002756639,0.0000410991,0.00006902857,0.0001667652,0.00006377286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003106893,"about_ca_system_score_gemma":0.000003318222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001353154,"about_ca_topic_score_gemma":0.00006807888,"domain_scores_codex":[0.9991879,0.00008752642,0.0001436498,0.0003219985,0.00005444288,0.0002044392],"domain_scores_gemma":[0.9996904,0.00006770907,0.00003508929,0.0001174089,0.000004987053,0.0000844682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002485177,0.00002640572,0.3523757,0.000002311551,0.000005423873,0.000006650659,0.00002817839,0.000005892667,0.6465595,0.00009032985,0.0000548415,0.000819852],"study_design_scores_gemma":[0.0003441502,0.0000590725,0.8792426,0.000005642497,0.00001292155,0.00008131496,0.000007275125,0.0006040501,0.1179146,0.0005848153,0.0009996592,0.0001439293],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963725,0.0001562264,0.0009725071,0.0003534614,0.000056485,0.00008698418,0.000001991246,0.00001858233,0.001981223],"genre_scores_gemma":[0.9992493,0.00001336057,0.000316687,0.0003514322,0.0000189458,0.000009232521,0.00001445443,0.000005500686,0.00002103482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5286449,"threshold_uncertainty_score":0.4416202,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136963428","doi":"10.1016/j.molbiopara.2012.03.006","title":"Protein palmitoylation inhibition by 2-bromopalmitate alters gliding, host cell invasion and parasite morphology in Toxoplasma gondii","year":2012,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Consejo Nacional de Investigaciones Científicas y Técnicas; Universidad Nacional de San Martín; Agencia Nacional de Promoción Científica y Tecnológica; National Institutes of Health; University of Ottawa","keywords":"Palmitoylation; Biology; Toxoplasma gondii; Cell biology; Biochemistry; Immunology; Cysteine; Enzyme","authors":[{"name":"Andrés M. Alonso","is_ca":false},{"name":"Verónica M. Cóceres","is_ca":false},{"name":"M.G. De Napoli","is_ca":false},{"name":"Alvaro F. Nieto Guil","is_ca":false},{"name":"Sergio O. Ángel","is_ca":false},{"name":"María M. Corvi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008488347399215576,"gpt":0.2554232274675768,"spread":0.2469348800683612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002891811,0.0003007279,0.0004234154,0.0001992675,0.0001368743,0.00001654885,0.00009534055,0.0005614278,0.00002883691],"category_scores_gemma":[0.0001560251,0.0002788236,0.00005258201,0.0001809755,0.0006005687,0.000120603,0.0002153095,0.0004940705,0.00007473108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005088495,"about_ca_system_score_gemma":0.00001848434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009478238,"about_ca_topic_score_gemma":0.0000121024,"domain_scores_codex":[0.9978476,0.0004097455,0.0003554012,0.0005285254,0.00006185455,0.0007969075],"domain_scores_gemma":[0.9994168,0.0001431949,0.000114364,0.0001870111,0.00003651868,0.0001021625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002004002,0.0001720789,0.06602912,0.00005611259,0.00003871464,0.00003633947,0.0002584638,3.264104e-7,0.9314505,0.0001669344,0.001368727,0.0002223235],"study_design_scores_gemma":[0.001688028,0.0002550494,0.01936579,0.00003463537,0.00002577171,0.0002773451,0.0001025577,0.000003859292,0.9769594,0.0001536615,0.0008443597,0.0002895147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883403,0.009853872,0.0001473201,0.0006509363,0.0001374433,0.0005159014,0.00003363411,0.00004263579,0.00027791],"genre_scores_gemma":[0.9988952,0.000226799,0.0001798289,0.0001752086,0.00002011662,0.0001086241,0.0002384957,0.00002158935,0.0001341418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04666333,"threshold_uncertainty_score":0.9999664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095145392","doi":"10.1016/j.molbiopara.2008.08.006","title":"Inflammatory pathways in malaria infection: TLRs share the stage with other components of innate immunity","year":2008,"lang":"en","type":"review","venue":"Molecular and Biochemical Parasitology","topic":"Malaria Research and Control","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; Toronto General Hospital; Centre for Global Health Research; University of Toronto","funders":"","keywords":"Malaria; Innate immune system; Biology; Immunology; Immunity; Inflammation; Toll-like receptor; Immune system","authors":[{"name":"Lauren Erdman","is_ca":true},{"name":"Constance A. M. Finney","is_ca":true},{"name":"W. Conrad Liles","is_ca":true},{"name":"Kevin C. Kain","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02994495958422187,"gpt":0.3199937631481662,"spread":0.2900488035639443,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001547381,0.0002966608,0.001190552,0.0001613703,0.00004614513,0.00000823962,0.000170706,0.000447585,0.00005951565],"category_scores_gemma":[0.0001087028,0.0001715455,0.0001995727,0.0002497757,0.0004497512,0.00001603831,0.0001179981,0.0008979714,0.000007023951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004157116,"about_ca_system_score_gemma":0.0002247394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002108783,"about_ca_topic_score_gemma":0.00001543538,"domain_scores_codex":[0.9983367,0.0003730173,0.0004355553,0.0003106322,0.0002290094,0.0003151413],"domain_scores_gemma":[0.9990876,0.0001095312,0.000176914,0.0004293135,0.00007378007,0.0001228629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01160871,0.006138776,0.09015575,0.166594,0.01348827,0.01830311,0.001189373,0.00001018389,0.1493685,0.02271721,0.002491588,0.5179345],"study_design_scores_gemma":[0.01042487,0.001899338,0.04244787,0.01621825,0.001456291,0.005016468,0.00004895253,0.00006216807,0.005990916,0.0001664663,0.9147814,0.001487037],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.08742201,0.9106442,0.00003605396,0.0002113326,0.00002929627,0.001077332,0.0000494628,0.00001719791,0.0005131555],"genre_scores_gemma":[0.1397791,0.8595858,0.00004086142,0.000125727,0.00004220946,0.0001438024,0.0002119613,0.00003684632,0.00003363737],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9122898,"threshold_uncertainty_score":0.6995423,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989685892","doi":"10.1016/j.molbiopara.2007.02.002","title":"Evidence for changes in the transcription levels of two putative P-glycoprotein genes in sea lice (Lepeophtheirus salmonis) in response to emamectin benzoate exposure","year":2007,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"Havforskningsinstituttet","keywords":"Lepeophtheirus; Biology; Emamectin benzoate; Gene; Glycoprotein; Transcription (linguistics); Zoology; Genetics; Ecology; Fish <Actinopterygii>; Fishery; Pesticide; Aquaculture","authors":[{"name":"Nicholas D. Tribble","is_ca":true},{"name":"John F. Burka","is_ca":true},{"name":"Frederick S.B. Kibenge","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04448388225502345,"gpt":0.3918945465249551,"spread":0.3474106642699317,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009565805,0.0001166835,0.0001867693,0.0001079012,0.00003144899,0.000004973095,0.0001560377,0.0001449671,0.00002199472],"category_scores_gemma":[0.0002223375,0.00009321118,0.00003546327,0.0003067727,0.0001613067,0.00004444618,0.0000313679,0.0001582396,0.000006091872],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005642831,"about_ca_system_score_gemma":0.000008900925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006130755,"about_ca_topic_score_gemma":0.003593107,"domain_scores_codex":[0.998814,0.0003011258,0.0002349748,0.0003041404,0.00008071562,0.0002650423],"domain_scores_gemma":[0.9992429,0.0005392571,0.00005084101,0.0001174161,0.000009018963,0.00004053529],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00178328,0.00007866394,0.1449368,0.000006236939,0.000003881873,0.00003516018,0.001205965,0.0000557238,0.8492708,0.00002086889,0.000004846737,0.002597771],"study_design_scores_gemma":[0.000344924,0.000241429,0.4894083,0.00002569203,0.00000447486,0.00002729503,0.0001682716,0.00002451763,0.5094349,0.0002035842,0.00004544716,0.00007115019],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959379,0.0004926769,0.001367107,0.001560435,0.00003641419,0.0005277973,0.00001508397,0.000003998151,0.00005855938],"genre_scores_gemma":[0.9987646,0.00001407312,0.0006889087,0.0004023191,0.000009601391,0.00009928596,0.000003789805,0.00000484016,0.00001254206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3444715,"threshold_uncertainty_score":0.3801042,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076632845","doi":"10.1016/s0166-6851(02)00164-0","title":"Peroxisomal targeting protein 14 (PEX14) from Leishmania donovani Molecular, biochemical, and immunocytochemical characterization","year":2002,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Leishmania donovani; Peroxisome; Leishmania; Computational biology; Cell biology; Biochemistry; Molecular biology; Genetics; Gene; Leishmaniasis; Visceral leishmaniasis","authors":[{"name":"Armando Jardim","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006800828830461426,"gpt":0.228541912908741,"spread":0.2217410840782796,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001113983,0.0005664439,0.0005165075,0.00009434323,0.0001514335,0.00009472727,0.0003261768,0.0009423005,0.0000858458],"category_scores_gemma":[0.0002566418,0.0005729588,0.0001459556,0.000199243,0.000530181,0.00002008746,0.0003322437,0.000456668,0.00001952223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003447432,"about_ca_system_score_gemma":0.00002791906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002181737,"about_ca_topic_score_gemma":4.15323e-7,"domain_scores_codex":[0.9971055,0.0001634036,0.0005388924,0.001261933,0.0002441419,0.0006861261],"domain_scores_gemma":[0.9988586,0.00002284962,0.0001831939,0.0004787217,0.000123611,0.0003329965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000178201,0.0001655922,0.002339571,0.00003421036,0.0001531323,0.00003784548,0.0000373841,4.479527e-7,0.9955971,0.00004272097,0.0007066338,0.0007071136],"study_design_scores_gemma":[0.001164272,0.0002299093,0.0003946341,0.0000344038,0.00005531242,0.0001074688,0.00002294501,0.0001459376,0.9943954,0.00008416008,0.002694734,0.0006707667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989129,0.007529507,0.001893103,0.0005347859,0.0001202894,0.0004788784,0.00006532289,0.00007252534,0.0001765606],"genre_scores_gemma":[0.9953434,0.0003277068,0.002101481,0.0006483523,0.0002214773,0.0001071345,0.001121123,0.00008129383,0.00004798076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0072018,"threshold_uncertainty_score":0.9996722,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059608440","doi":"10.1016/s0166-6851(01)00223-7","title":"Identification and characterization of a Plasmodium falciparum RNA polymerase gene with similarity to mitochondrial RNA polymerases","year":2001,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Washington","keywords":"Biology; Polymerase; RNA polymerase; RNA polymerase I; RNA editing; T7 RNA polymerase; RNA-dependent RNA polymerase; Genetics; Small nuclear RNA; Molecular biology; Gene; RNA; Bacteriophage","authors":[{"name":"Jiangning Li","is_ca":false},{"name":"John A. Maga","is_ca":false},{"name":"Nicolas Cermakian","is_ca":true},{"name":"Robert Cedergren","is_ca":true},{"name":"Jean E. Feagin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007168811730267406,"gpt":0.2457975339517832,"spread":0.2386287222215158,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004363796,0.0001918993,0.0002417797,0.00005901452,0.00006994371,0.00001811866,0.0001020811,0.000167294,0.000002745598],"category_scores_gemma":[0.00003090117,0.0001747529,0.00004297854,0.000102849,0.0001877467,0.000001716053,0.0001118091,0.00005655905,8.882417e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004673457,"about_ca_system_score_gemma":0.00002650605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003543042,"about_ca_topic_score_gemma":0.00001017647,"domain_scores_codex":[0.9989203,0.00004571437,0.0002462186,0.0004611207,0.00009346857,0.0002331835],"domain_scores_gemma":[0.9994584,0.00001066745,0.00009681772,0.0002324598,0.00006998309,0.0001317026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004973258,0.00006705374,0.006441193,0.00001343607,0.00008248168,0.000009021362,0.00003846861,0.000002918454,0.9920081,0.00003267765,0.00004294989,0.000764308],"study_design_scores_gemma":[0.000598833,0.0003538441,0.01999528,0.000006911549,0.00005510873,0.00007615525,0.00001534686,0.00001883421,0.9782325,0.00003028995,0.0004142245,0.0002026978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938185,0.001081869,0.004070001,0.0006010918,0.00008701963,0.0002338875,0.00005980903,0.000004328655,0.0000435091],"genre_scores_gemma":[0.9985969,0.0002795633,0.0004649378,0.0003582967,0.00009651973,0.00002943078,0.0001250844,0.00001674792,0.00003251739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01377569,"threshold_uncertainty_score":0.7126216,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014173566","doi":"10.1016/j.molbiopara.2007.04.007","title":"Leishmania donovani iron superoxide dismutase A is targeted to the mitochondria by its N-terminal positively charged amino acids","year":2007,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Biochemistry; Mitochondrion; Amino acid; Superoxide dismutase; Reactive oxygen species; Leishmania donovani; Superoxide; Antioxidant; Leishmania; Enzyme; Leishmaniasis; Parasite hosting; Immunology; Visceral leishmaniasis","authors":[{"name":"Fitsum Getachew","is_ca":true},{"name":"Lashitew Gedamu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0114262575415921,"gpt":0.3097025643011206,"spread":0.2982763067595285,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002790596,0.0003353727,0.0005086421,0.0001235984,0.0001809503,0.00003515413,0.0002466029,0.0002600416,0.00006276897],"category_scores_gemma":[0.0003472152,0.0002383845,0.0001387122,0.0003165535,0.0003290301,0.00004450031,0.0002259313,0.000452315,0.000127378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008348039,"about_ca_system_score_gemma":0.00004246584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004926825,"about_ca_topic_score_gemma":0.000009099294,"domain_scores_codex":[0.9975819,0.00009896363,0.0003794538,0.0006920886,0.0004174747,0.0008301479],"domain_scores_gemma":[0.998814,0.0001232325,0.00005663029,0.0003765619,0.0001699265,0.0004595873],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008037869,0.0001781714,0.01127054,0.00004465646,0.0001469067,0.0008128417,0.0002416949,4.268636e-8,0.9579107,0.00004347608,0.02769551,0.0008516787],"study_design_scores_gemma":[0.001248903,0.000630634,0.05890397,0.00003274961,0.0001282342,0.0006716949,0.0001034711,0.00001566549,0.9320235,0.00001458676,0.00596549,0.0002611518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821827,0.003418482,0.001231404,0.0118039,0.0001013918,0.0007636878,0.00007649663,0.00004778968,0.000374188],"genre_scores_gemma":[0.9934899,0.00006836691,0.0006351313,0.005148039,0.0001428611,0.00005375205,0.0001027398,0.00003355662,0.0003256725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04763342,"threshold_uncertainty_score":0.9721037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969584011","doi":"10.1016/j.molbiopara.2007.03.010","title":"Characterization of a serotonin transporter in the parasitic flatworm, Schistosoma mansoni: Cloning, expression and functional analysis","year":2007,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Flatworm; Biology; Serotonin transporter; Schistosoma mansoni; Cloning (programming); Turbellaria; Serotonin; Trematoda; Cell biology; Helminths; Zoology; Genetics; Schistosomiasis","authors":[{"name":"Nicholas Patocka","is_ca":true},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006106474585124224,"gpt":0.2404490540995121,"spread":0.2343425795143879,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002429432,0.0001602767,0.0002338611,0.0001105985,0.0000521772,0.00001161435,0.0001038021,0.0002389812,0.000007255823],"category_scores_gemma":[0.00002030454,0.0001312691,0.00008486698,0.0001740578,0.000211347,0.000003997466,0.00002627611,0.0001240246,4.503891e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005271138,"about_ca_system_score_gemma":0.00001576472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002450839,"about_ca_topic_score_gemma":0.00003983407,"domain_scores_codex":[0.9989007,0.00007529969,0.0002949761,0.0003650179,0.0001304013,0.0002335938],"domain_scores_gemma":[0.9995696,0.00002065737,0.00008834634,0.0002214546,0.00003682572,0.00006313209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001322453,0.00006412126,0.1135902,0.00001880133,0.00006102075,0.00001307789,0.0002184909,0.00001777939,0.8857197,0.00005605516,0.000009289441,0.00009923346],"study_design_scores_gemma":[0.0003303873,0.00008975118,0.3352775,0.000005910589,0.0001012297,0.00003579378,0.00003139917,0.00006130427,0.6637896,0.00004091184,0.0001272227,0.0001090363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9536385,0.0005775166,0.04537897,0.0001446041,0.00003645802,0.000162996,0.000007605531,0.000004825281,0.00004852227],"genre_scores_gemma":[0.998829,0.00009181947,0.000400788,0.0003320704,0.00004312339,0.000009574412,0.0002686875,0.00001053327,0.00001437788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2219301,"threshold_uncertainty_score":0.5352999,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130712328","doi":"10.1016/j.molbiopara.2014.11.002","title":"Tetracycline-inducible gene expression system in Leishmania mexicana","year":2014,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Institute for Advanced Research","funders":"Seventh Framework Programme; Ostravská Univerzita v Ostravě; Grantová Agentura České Republiky","keywords":"Biology; Tetracycline; Leishmania mexicana; Leishmania; Gene; Gene expression; Parasitology; Virulence; Regulation of gene expression; Pathogen; Microbiology; Genetics; Parasite hosting; Antibiotics","authors":[{"name":"Natalya Kraeva","is_ca":false},{"name":"Aygul Ishemgulova","is_ca":false},{"name":"Julius Lukeš","is_ca":true},{"name":"Vyacheslav Yurchenko","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01413620635367026,"gpt":0.3097724168395214,"spread":0.2956362104858511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002477215,0.0001711573,0.0004662199,0.0001432307,0.00005097956,0.00001129162,0.0001046652,0.0002171267,0.0000106546],"category_scores_gemma":[0.0003159141,0.0001375668,0.00006723566,0.0001775309,0.0001766062,0.00002426011,0.0001179568,0.0002911656,0.00002807275],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005644222,"about_ca_system_score_gemma":0.00002735502,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008377809,"about_ca_topic_score_gemma":0.000007484803,"domain_scores_codex":[0.9984931,0.0001211154,0.0002835378,0.0004793498,0.0002254584,0.0003974637],"domain_scores_gemma":[0.9992883,0.00008713083,0.00004444635,0.0003233741,0.00005849263,0.000198226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001163472,0.00009000525,0.0641744,0.0001242162,0.00002574888,0.0002360998,0.00002446999,8.179805e-7,0.9335349,0.0003269069,0.0007585494,0.0005875501],"study_design_scores_gemma":[0.001273899,0.0002054686,0.04114934,0.0001057368,0.00002830753,0.0002952573,0.00006419226,0.0002267655,0.9558839,0.00009678359,0.0005259399,0.0001443846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930979,0.001144202,0.0007786956,0.001033116,0.0000628932,0.0002415976,0.000001705092,0.00004297054,0.003596914],"genre_scores_gemma":[0.997782,0.00004236841,0.001683615,0.0002885105,0.00009055875,0.00003455462,0.00001433562,0.0000178117,0.00004627831],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02302506,"threshold_uncertainty_score":0.5609812,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1654828326","doi":"10.1016/j.molbiopara.2015.09.001","title":"A constitutively active G protein-coupled acetylcholine receptor regulates motility of larval Schistosoma mansoni","year":2015,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Acetylcholine; Cholinergic; Carbachol; Acetylcholine receptor; Muscarinic acetylcholine receptor; Receptor; Schistosoma mansoni; Muscarinic acetylcholine receptor M5; Agonist; Muscarinic acetylcholine receptor M3; Cell biology; Pharmacology; Endocrinology; Biochemistry; Immunology","authors":[{"name":"Kevin MacDonald","is_ca":true},{"name":"Michael J. Kimber","is_ca":false},{"name":"Tim A. Day","is_ca":false},{"name":"Paula Ribeiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01406625884013068,"gpt":0.2867664380464055,"spread":0.2727001792062748,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009325457,0.0002072074,0.0004304486,0.00007945101,0.0000742039,0.000006868327,0.0001548005,0.0003904919,0.000263657],"category_scores_gemma":[0.0003921903,0.0001843355,0.0001093812,0.0001181734,0.0009408208,0.0000535027,0.00009688629,0.0003566449,0.0001095222],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000373504,"about_ca_system_score_gemma":0.0001100207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001683732,"about_ca_topic_score_gemma":0.000007903942,"domain_scores_codex":[0.9987959,0.000149863,0.0003072896,0.0003928154,0.00004531686,0.0003087643],"domain_scores_gemma":[0.9992481,0.00007762169,0.0001876112,0.0002348492,0.0001725231,0.00007927691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007398514,0.0002278286,0.002171702,0.00001524271,0.0001986994,0.000009895723,0.0001122376,9.68417e-7,0.9931029,0.001039014,0.002086667,0.0002950054],"study_design_scores_gemma":[0.001370829,0.0002460227,0.003887857,0.00003262773,0.00005933371,0.0001989766,0.0001030274,0.00001268589,0.9865047,0.0003834105,0.007029219,0.0001713575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995832,0.001706225,0.0002511573,0.0004323496,0.0001962639,0.0002962566,0.0003011953,0.00004284657,0.0009417412],"genre_scores_gemma":[0.9985241,0.00001099313,0.0006756717,0.00008491657,0.00001797325,0.00003804762,0.0003174109,0.00001037584,0.0003204743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006598234,"threshold_uncertainty_score":0.7516982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058369914","doi":"10.1016/j.molbiopara.2006.02.015","title":"Leishmania donovani singly deficient in HGPRT, APRT or XPRT are viable in vitro and within mammalian macrophages","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Faculty of Medicine, McGill University; McGill University","keywords":"Hypoxanthine-guanine phosphoribosyltransferase; Biology; Adenine phosphoribosyltransferase; Phosphoribosyltransferase; Hypoxanthine Phosphoribosyltransferase; Leishmania donovani; Amastigote; Purine; Biochemistry; Axenic; Hypoxanthine; Leishmania; Molecular biology; Mutant; Enzyme; Genetics; Gene; Leishmaniasis; Visceral leishmaniasis; Parasite hosting","authors":[{"name":"Jan M. Boitz","is_ca":false},{"name":"Buddy Ullman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007629304554124388,"gpt":0.2650985897665634,"spread":0.257469285212439,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002325656,0.0003409788,0.0004141658,0.0001550056,0.00006120032,0.00005257486,0.0002314514,0.0005231612,0.00001225742],"category_scores_gemma":[0.00009699858,0.0002983603,0.00007540724,0.0002981909,0.000423388,0.000006234232,0.0003192039,0.0003409705,0.000004802224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003368978,"about_ca_system_score_gemma":0.00006080617,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003388168,"about_ca_topic_score_gemma":0.0002268194,"domain_scores_codex":[0.9976366,0.0001270992,0.0004405498,0.0009227457,0.0001922326,0.0006807635],"domain_scores_gemma":[0.9993395,0.00002283669,0.00008833887,0.0003290091,0.00005353735,0.0001667651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007955496,0.0002355824,0.0120333,0.00007296506,0.00001589862,0.0004540793,0.00001178189,0.00001210942,0.9855157,0.0001185133,0.000345392,0.0003891126],"study_design_scores_gemma":[0.001497343,0.0002018118,0.006422598,0.00003136261,0.00001412803,0.0002770288,0.00004583106,0.00009003538,0.9891806,0.0003949384,0.001451027,0.0003933077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939457,0.004441164,0.0003059391,0.0005159969,0.00005581415,0.000311058,0.00002008838,0.0000148486,0.0003894207],"genre_scores_gemma":[0.9977089,0.00008044706,0.001173628,0.0004969448,0.00006494885,0.00004704651,0.0001576108,0.00003557111,0.0002349289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005610706,"threshold_uncertainty_score":0.9999468,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3041946983","doi":"10.1016/j.molbiopara.2020.111295","title":"Bar-seq strategies for the LeishGEdit toolbox","year":2020,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Medical Research Council Canada; Royal Society","keywords":"CRISPR; Biology; Computational biology; Genome; Pipeline (software); Barcode; Function (biology); Genome editing; Genetics; Gene; Computer science; Programming language","authors":[{"name":"Tom Beneke","is_ca":false},{"name":"Eva Gluenz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01057190531115937,"gpt":0.3092427184433535,"spread":0.2986708131321941,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005461788,0.000154242,0.0001450845,0.000009320886,0.00006694315,0.00003294127,0.0001801741,0.0001701648,0.000008362114],"category_scores_gemma":[0.00009547349,0.000118364,0.0000950056,0.00004794653,0.0001366681,0.000002018385,0.00006973978,0.00009557226,0.000003622037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002387213,"about_ca_system_score_gemma":0.00003173267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003933773,"about_ca_topic_score_gemma":0.000001501987,"domain_scores_codex":[0.9991933,0.00001860405,0.0001415014,0.0003402515,0.00006357745,0.0002428313],"domain_scores_gemma":[0.9996139,0.00003125517,0.0000324152,0.0001782373,0.00003612272,0.0001080674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008069857,0.00001014062,0.000307138,0.00002664273,0.00005872701,0.000003869979,0.00003492032,0.0001411665,0.9917712,0.0007576657,0.006153997,0.0006538127],"study_design_scores_gemma":[0.0005512604,0.0003104102,0.0006805857,0.000003000138,0.00005597418,0.00003720797,0.0001730496,0.0007844573,0.9645688,0.0003355808,0.03226958,0.0002300738],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7108345,0.005562146,0.2787407,0.004091975,0.000137519,0.0002642246,0.00001676741,0.00002219643,0.0003299158],"genre_scores_gemma":[0.9964474,0.00007052101,0.001189633,0.001824366,0.0003317825,0.00004473224,0.00005307361,0.0000178559,0.0000205853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2856129,"threshold_uncertainty_score":0.4826742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018604179","doi":"10.1016/s0166-6851(01)00307-3","title":"Stage-specific expression in Leishmania conferred by 3′ untranslated regions of L. major leishmanolysin genes (GP63)","year":2001,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver Hospital and Health Sciences Centre; University of British Columbia","funders":"","keywords":"Leishmania; Biology; Phagolysosome; Macrophage; Exosome; Microvesicles; Leishmania major; Leishmaniasis; Cell biology; Immune system; Virulence; Gene; Microbiology; Immunology; Parasite hosting; microRNA; Genetics; In vitro","authors":[{"name":"Ben L. Kelly","is_ca":false},{"name":"Tanya N. Nelson","is_ca":true},{"name":"W. Robert McMaster","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02110233641442835,"gpt":0.3116208424254625,"spread":0.2905185060110342,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001281477,0.0002329169,0.0006321709,0.0001518094,0.00005137421,0.00001271318,0.0001441671,0.0002893148,0.00007415998],"category_scores_gemma":[0.00007729135,0.0002015836,0.0001028598,0.0003504976,0.0004329718,0.00004090474,0.00008534137,0.0003026871,0.000007307967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003691979,"about_ca_system_score_gemma":0.00004559728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000914136,"about_ca_topic_score_gemma":0.00002055738,"domain_scores_codex":[0.9981775,0.000128437,0.0004426258,0.0005128765,0.0002749931,0.0004635182],"domain_scores_gemma":[0.9992002,0.00008180938,0.00008239796,0.0003459881,0.0001127489,0.0001768021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005750811,0.0002758301,0.07017435,0.0000667531,0.00006782435,0.0004354758,0.00006088912,7.808705e-7,0.9240025,0.0001480656,0.003350782,0.0008417226],"study_design_scores_gemma":[0.002674492,0.0002353049,0.0258004,0.00009861121,0.00003907631,0.0001709994,0.0001109771,0.00003496431,0.9614994,0.0001339372,0.009000004,0.000201871],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801708,0.01463221,0.001292348,0.002615744,0.00003810353,0.0004004681,0.0000159173,0.00003573329,0.0007986715],"genre_scores_gemma":[0.9964758,0.00242223,0.0004827942,0.0001447918,0.00002468417,0.00003255269,0.00008964898,0.0000244781,0.000303012],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04437396,"threshold_uncertainty_score":0.8220342,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1469880729","doi":"10.1016/j.molbiopara.2015.07.003","title":"Generation of an aquaglyceroporin AQP1 null mutant in Leishmania major","year":2015,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Mutant; Leishmania; Leishmania major; Plasmid; Cell biology; Biochemistry; Gene; Parasite hosting","authors":[{"name":"Marie Plourde","is_ca":true},{"name":"Jean-Michel Ubeda","is_ca":true},{"name":"Goutam Mandal","is_ca":false},{"name":"Rubens Lima do Monte‐Neto","is_ca":false},{"name":"Rita Mukhopadhyay","is_ca":false},{"name":"Marc Ouellette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05268922647087854,"gpt":0.3575319997781151,"spread":0.3048427733072365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001982284,0.0001224746,0.0003526316,0.0001134623,0.00001372063,0.000006915368,0.00007303521,0.0001498786,0.000009766861],"category_scores_gemma":[0.0002439823,0.0001032377,0.00003861832,0.0001425778,0.0002168978,0.0000355256,0.00006728664,0.000162712,0.000006865628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004556207,"about_ca_system_score_gemma":0.00006035454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001896716,"about_ca_topic_score_gemma":0.00004822774,"domain_scores_codex":[0.9988664,0.00009289136,0.0002624982,0.0003041022,0.0002224305,0.0002516746],"domain_scores_gemma":[0.9994082,0.00001848717,0.00004522282,0.0002168362,0.0001060694,0.0002051278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002949059,0.0002206437,0.02425951,0.00003270816,0.00004399784,0.0003667899,0.0001321819,0.000001509481,0.9731593,0.0002895161,0.0005241974,0.0006747185],"study_design_scores_gemma":[0.002155063,0.0007793391,0.01286998,0.00001542679,0.00004098657,0.0002605586,0.0001269241,0.0005782125,0.982409,0.0003324545,0.0003125721,0.0001194736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966486,0.001044015,0.0001490694,0.001250135,0.00004754158,0.0002218143,0.000003002555,0.0000149385,0.0006208625],"genre_scores_gemma":[0.9983616,0.00003495578,0.001201783,0.0002406214,0.00006561137,0.00001656738,0.0000474458,0.00001189196,0.0000195265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01138952,"threshold_uncertainty_score":0.4209912,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}