{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":20,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":20,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"b1dec4476557","filters":{"venue":"Nucleic Acids Symposium Series"}},"results":[{"id":"W2133771450","doi":"10.1093/nass/nrn018","title":"The acetal levulinyl ester (ALE) group for the 2'-hydroxyl protection of ribonucleosides and the synthesis of oligoribonucleotides","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Phosphoramidite; Chemistry; Oligonucleotide; Reagent; Oligonucleotide synthesis; Protecting group; Triethylamine; Acetal; Acetonitrile; Combinatorial chemistry; Derivative (finance); Nucleoside; Nucleic acid; Stereochemistry; Organic chemistry; DNA; Biochemistry","authors":[{"name":"Jeremy G. Lackey","is_ca":true},{"name":"M. J. Damha","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007707845444279148,"gpt":0.2014710723691078,"spread":0.1937632269248286,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004794447,0.0002468191,0.0003061274,0.00001815807,0.0007080442,0.00003746463,0.0004807319,0.0001784692,0.000005541894],"category_scores_gemma":[0.0002686913,0.000129585,0.0002398421,0.00009221488,0.002363089,0.00002319699,0.0002231571,0.0001278029,0.000001099864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009514746,"about_ca_system_score_gemma":0.00003919044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004121709,"about_ca_topic_score_gemma":0.00002527147,"domain_scores_codex":[0.9986885,0.00008918693,0.0004275983,0.0003056921,0.000206638,0.00028243],"domain_scores_gemma":[0.9986038,0.0002667842,0.0002978792,0.0006433123,0.0001404255,0.00004785641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001629717,0.00005225781,0.0009984564,0.0001324985,0.0002717069,7.21758e-7,0.0005455022,0.00002136887,0.9925501,0.001187511,0.000584601,0.002025579],"study_design_scores_gemma":[0.000970749,0.0003245757,0.00196366,0.00003788856,0.0001614658,0.0001366392,0.0009650743,0.0002418957,0.9725562,0.0003493088,0.02208463,0.0002079212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935151,0.001453054,0.0003978424,0.002950371,0.0001904104,0.0006758949,0.00005184098,0.00002066659,0.0007447616],"genre_scores_gemma":[0.9959255,0.002560444,0.0003610136,0.00007920814,0.0002457692,0.0002031985,0.000008275384,0.00004345146,0.0005731633],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02150003,"threshold_uncertainty_score":0.87069,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124235959","doi":"10.1093/nass/nrn124","title":"Stability and Mismatch Discrimination of DNA duplexes containing 2,6-Diaminopurine and 2-Thiothymidine Locked Nucleic Acid bases","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Oligonucleotide; Nucleic acid; Differential scanning calorimetry; DNA; Base pair; Chemistry; Analytical Chemistry (journal); Biochemistry; Chromatography; Thermodynamics; Physics","authors":[{"name":"Curtis Hughesman","is_ca":true},{"name":"Robin F. B. Turner","is_ca":true},{"name":"Charles A. Haynes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0109651613128992,"gpt":0.2141356386790087,"spread":0.2031704773661095,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001671232,0.0003238519,0.0003934439,0.00004499085,0.000237006,0.00003024825,0.0001794718,0.0002330626,0.00005359898],"category_scores_gemma":[0.0001147687,0.0003134027,0.00007948802,0.00009283479,0.0008396741,0.00004589164,0.0002710003,0.0001183702,0.000001305212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001966607,"about_ca_system_score_gemma":0.00006769809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003056432,"about_ca_topic_score_gemma":0.00001821294,"domain_scores_codex":[0.9984532,0.00005727622,0.0004159287,0.0005500161,0.0002038558,0.0003197474],"domain_scores_gemma":[0.9990494,0.00002776619,0.0001832979,0.0004424667,0.0001387636,0.0001582784],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004038586,0.00009392546,0.02329927,0.0002655343,0.0000539577,0.000008614819,0.0009702036,8.118738e-7,0.9742652,0.00009753939,0.0002285288,0.0003125858],"study_design_scores_gemma":[0.000855504,0.0006463354,0.01410662,0.00004881188,0.00005198948,0.0002022774,0.001316653,0.00003258633,0.9793791,0.00006134327,0.002954868,0.0003438711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966857,0.001097527,0.0000548715,0.0005691483,0.00008111366,0.0001854807,0.00006302473,0.00004487949,0.001218264],"genre_scores_gemma":[0.9965834,0.001670772,0.0009178804,0.0001104412,0.0001291671,0.00001782054,0.0001236374,0.00004655416,0.0004003544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009192648,"threshold_uncertainty_score":0.9999318,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123594191","doi":"10.1093/nass/nrl003","title":"Convenient synthesis of 3′,5′-cyclic diguanylic acid (cdiGMP)","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"","keywords":"Phosphonate; Protecting group; Homogeneous; Chemistry; Group (periodic table); Stereochemistry; Combinatorial chemistry; Organic chemistry; Mathematics; Combinatorics","authors":[{"name":"Hongbin Yan","is_ca":true},{"name":"Eric Humes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005044962539634032,"gpt":0.2174566841295275,"spread":0.2124117215898935,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000129317,0.0002362612,0.0002690641,0.00006080124,0.00009494838,0.00003250958,0.0003728195,0.0002519983,0.00006855616],"category_scores_gemma":[0.00006882162,0.0002145447,0.0002005442,0.0001544257,0.0004121829,0.000009843304,0.000257399,0.0001161097,0.00003184885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001860861,"about_ca_system_score_gemma":0.00006515279,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005937196,"about_ca_topic_score_gemma":0.00001674232,"domain_scores_codex":[0.9984432,0.00006927893,0.0003364618,0.0004414958,0.0002891019,0.000420466],"domain_scores_gemma":[0.9991,0.00001344731,0.0001029089,0.0005505043,0.0001220339,0.0001111039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001800097,0.0001334389,0.001571013,0.00006933422,0.00005001845,0.000005959792,0.00001843543,0.000005354902,0.9945848,0.0009695904,0.001855144,0.0005569092],"study_design_scores_gemma":[0.0002731078,0.0002474937,0.001094726,0.00002275977,0.0000270738,0.00003136035,0.00004625377,0.000005028593,0.9501249,0.0002022429,0.04768911,0.0002359466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9836814,0.0008641651,0.0002180864,0.0008194461,0.0001096724,0.0002108678,0.00005501947,0.0000355444,0.01400582],"genre_scores_gemma":[0.9970598,0.00022615,0.000580466,0.0001067106,0.000203904,0.00005636611,0.0000985506,0.0000460504,0.001622037],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04583396,"threshold_uncertainty_score":0.8748879,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100578782","doi":"10.1093/nass/nrn203","title":"RNA containing pyrrolocytidine base analogs: good binding affinity and fluorescence that responds to hybridization","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; McGill University","funders":"","keywords":"Fluorescence; Nucleic acid; RNA; Chemistry; DNA; Substituent; Duplex (building); Nucleoside; Base pair; Biochemistry; Biophysics; Stereochemistry; Biology; Gene","authors":[{"name":"A. S. Wahba","is_ca":true},{"name":"M. J. Damha","is_ca":true},{"name":"R. H.E. Hudson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01300428773768932,"gpt":0.2213960408229133,"spread":0.208391753085224,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002121302,0.0003096694,0.0002730236,0.00008450762,0.0004065714,0.00005874764,0.0002765717,0.0002167922,0.00003557534],"category_scores_gemma":[0.000121439,0.0003170299,0.00007650773,0.0002047564,0.0002521283,0.00004055768,0.0003030073,0.000151518,0.00001681042],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003943765,"about_ca_system_score_gemma":0.00009755859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001372413,"about_ca_topic_score_gemma":0.000008722468,"domain_scores_codex":[0.9984029,0.00006000963,0.0002689399,0.0006101571,0.0002321648,0.0004258373],"domain_scores_gemma":[0.9990284,0.0000216401,0.0001163533,0.0004729001,0.0001017291,0.0002589696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005673838,0.00003777812,0.01480498,0.00003042479,0.00003708553,0.00004207592,0.0003473422,0.00002158815,0.9826862,0.00008323626,0.001078051,0.0002639145],"study_design_scores_gemma":[0.0006329064,0.0006098047,0.003712726,0.00003870758,0.00002701749,0.0002618771,0.0005517027,0.00004956896,0.9841185,0.00001274979,0.009579724,0.000404674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954213,0.0001667498,0.0003070957,0.0007189243,0.0001461783,0.0001607231,0.00005049923,0.00007695522,0.002951559],"genre_scores_gemma":[0.9954386,0.0005414558,0.001956543,0.0003919198,0.0002239292,0.00002175266,0.00014624,0.00005339944,0.001226096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01109226,"threshold_uncertainty_score":0.9999282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057080399","doi":"10.1093/nass/nrn157","title":"Some Observations on Detritylation in Solid-Phase Oligonucleotide Synthesis","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University; University of Calgary","funders":"","keywords":"Solid-phase synthesis; Oligonucleotide; Phase (matter); Combinatorial chemistry; Chemistry; Computer science; Biochemistry; Organic chemistry; DNA","authors":[{"name":"Sarah E. Millar","is_ca":true},{"name":"Haijun Yan","is_ca":true},{"name":"Yogesh S. Sanghvi","is_ca":true},{"name":"Richard T. Pon","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01743683295887322,"gpt":0.265388403371503,"spread":0.2479515704126298,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001206216,0.0002815714,0.0002626633,0.00009602943,0.0002453653,0.00003003897,0.0003007893,0.0002784338,0.00004038683],"category_scores_gemma":[0.0001877922,0.0002982244,0.0001233348,0.0002048644,0.0002145392,0.00004496811,0.0001101179,0.0001679124,0.00004973661],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005368614,"about_ca_system_score_gemma":0.00008921008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001597297,"about_ca_topic_score_gemma":0.00001541031,"domain_scores_codex":[0.9984607,0.00005187876,0.0003907269,0.0004897764,0.0002211749,0.0003857118],"domain_scores_gemma":[0.9990996,0.00003343856,0.0001126808,0.0005557772,0.00007341774,0.000125099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002877451,0.0003094427,0.006733869,0.00002648828,0.00003237766,0.00002895098,0.0001544251,0.0001363713,0.989956,0.0004221346,0.001666956,0.0002453013],"study_design_scores_gemma":[0.000934474,0.0003522353,0.01015697,0.00004071376,0.00002001813,0.0000671235,0.0001324816,0.00008834071,0.974199,0.0001724856,0.01343868,0.0003974855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995428,0.0001396494,0.00003461327,0.0009993553,0.0001811109,0.0001621397,0.00004662603,0.00006555874,0.002943007],"genre_scores_gemma":[0.9960689,0.0008078796,0.0007411388,0.0005079095,0.0004527922,0.00006089117,0.0001208751,0.00005670699,0.001182914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01575695,"threshold_uncertainty_score":0.999947,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166828743","doi":"10.1093/nass/nrn219","title":"Effect of Linker Length on DNA Duplexes Containing a Mismatched O6-2'-Deoxyguanosine-Alkyl Interstrand Cross-Link","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"","keywords":"Chemistry; Duplex (building); Deoxyguanosine; Linker; DNA; Oligonucleotide; Stereochemistry; Alkyl; Nucleic acid; Cross-link; Alkylation; Combinatorial chemistry; Biochemistry; Organic chemistry; Polymer","authors":[{"name":"Jason D. M. Booth","is_ca":true},{"name":"Shona Murphy","is_ca":true},{"name":"Anne M. Noronha","is_ca":true},{"name":"Christopher J. Wilds","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006730713655585699,"gpt":0.2432588598845451,"spread":0.2365281462289594,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002620824,0.0005030437,0.0005794434,0.00006196008,0.000248749,0.00004862454,0.0004631071,0.0005004357,0.00008260266],"category_scores_gemma":[0.0001352205,0.0004469532,0.0003200224,0.0001229776,0.0007235467,0.00002885512,0.0001910877,0.0002766945,0.00002189367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003479266,"about_ca_system_score_gemma":0.00008680969,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001148928,"about_ca_topic_score_gemma":0.000003161263,"domain_scores_codex":[0.9978971,0.0001008518,0.0005406091,0.000651427,0.0003063978,0.0005036236],"domain_scores_gemma":[0.9986582,0.00006853528,0.0002398752,0.0007248301,0.0001344752,0.000174098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003286838,0.0000805299,0.0101655,0.0001983277,0.000169085,0.00003618058,0.0005687021,0.00003415094,0.9842112,0.00003639593,0.0007518355,0.000461231],"study_design_scores_gemma":[0.002206736,0.003656542,0.00141963,0.0001010024,0.00006002684,0.000178369,0.0001180573,0.00001932595,0.9812247,0.00001332076,0.01055692,0.0004454213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929744,0.0003127149,0.00004018219,0.0004283079,0.0003142668,0.0002571721,0.00005243193,0.00007962202,0.005540885],"genre_scores_gemma":[0.996663,0.0003512569,0.0002152948,0.0002523894,0.0004645524,0.0000328624,0.0001410223,0.00009244651,0.001787209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009805083,"threshold_uncertainty_score":0.9997982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147760811","doi":"10.1093/nass/2.1.1","title":"Tandem oligonucleotide synthesis using linker (First BaseTM) phosphoramidites","year":2002,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Linker; Oligonucleotide; Tandem; Combinatorial chemistry; Oligonucleotide synthesis; Chemistry; Computational biology; DNA; Computer science; Biology; Biochemistry; Programming language; Materials science","authors":[{"name":"R. T. Pon","is_ca":true},{"name":"Shanhe Yu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01243330272722991,"gpt":0.2094181204719361,"spread":0.1969848177447061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001438419,0.0004739491,0.0003766961,0.00005508185,0.0004283698,0.0001320099,0.0005078077,0.0004369224,0.0009219344],"category_scores_gemma":[0.0001402529,0.0004781072,0.0002467744,0.0001964668,0.0003719707,0.00003758695,0.0002836623,0.000202526,0.0001490307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000598002,"about_ca_system_score_gemma":0.00003462344,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000275976,"about_ca_topic_score_gemma":0.00001228635,"domain_scores_codex":[0.997868,0.00004784971,0.0004252584,0.0007222483,0.0002939475,0.0006426832],"domain_scores_gemma":[0.9986032,0.00002680084,0.0001685371,0.0008439597,0.0001144278,0.0002430515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007609479,0.0001426402,0.006414569,0.00007060989,0.0001350314,0.00002667641,0.0001506647,0.00009523093,0.9833596,0.00005826976,0.008854915,0.0006157404],"study_design_scores_gemma":[0.000351279,0.0001447937,0.0004621252,0.00006440991,0.0001046095,0.0001530385,0.0002176953,0.0006483422,0.8406961,0.00003466407,0.1564785,0.0006444874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9837609,0.001143609,0.000128781,0.0009485063,0.0003705954,0.0001697717,0.00006985213,0.0001319617,0.01327601],"genre_scores_gemma":[0.991707,0.001364277,0.002748174,0.0004601644,0.0007064989,0.00003089998,0.00004921587,0.0001289201,0.002804857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1476235,"threshold_uncertainty_score":0.9999914,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984511634","doi":"10.1093/nass/nrn204","title":"Exceptional Fluorescence and Hybridization Properties of a Phenylpyrrolocytosine in Peptide Nucleic Acid","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Fluorescence; Peptide nucleic acid; Nucleic acid; DNA; Nucleobase; Chemistry; Quantum yield; Peptide; Combinatorial chemistry; Derivative (finance); Nucleic acid thermodynamics; Biochemistry; Stereochemistry; Biophysics; Biology; Base sequence; Physics","authors":[{"name":"Filip Wojciechowski","is_ca":true},{"name":"R. H.E. Hudson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00922484523586553,"gpt":0.1957963854358005,"spread":0.186571540199935,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009659454,0.0002362766,0.0002570167,0.00006118237,0.0001210513,0.00001635776,0.0002077037,0.0001739591,0.00003341593],"category_scores_gemma":[0.00005726015,0.0002272801,0.00006474015,0.0001367507,0.0006007152,0.00003788538,0.0001772102,0.0001123092,0.000005965539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002405079,"about_ca_system_score_gemma":0.00009211526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001647765,"about_ca_topic_score_gemma":0.00001066009,"domain_scores_codex":[0.9987064,0.00003815371,0.000356227,0.0004127788,0.0002099267,0.0002765397],"domain_scores_gemma":[0.9993622,0.000004020458,0.0001209204,0.0003173702,0.000110708,0.00008473911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003476884,0.00008973725,0.01619801,0.00009916314,0.00002160198,0.000008703471,0.0004675116,0.00002016382,0.9821312,0.00005332695,0.000440225,0.0001226421],"study_design_scores_gemma":[0.0006850085,0.0002423146,0.01014028,0.00007159423,0.00001336059,0.0002427454,0.0002292947,0.00009396454,0.9853863,0.00003133939,0.002592253,0.0002715543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974865,0.0006793985,0.00003655623,0.0003831917,0.00006716055,0.0001456551,0.00001833923,0.00002810841,0.001155113],"genre_scores_gemma":[0.996518,0.001295647,0.001087926,0.00009725334,0.0001554707,0.00002259767,0.00005662836,0.0000373702,0.0007290732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006057726,"threshold_uncertainty_score":0.9268213,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002420374","doi":"10.1093/nass/nrn228","title":"Synthesis, Biophysical and Repair Studies of O6-2'-Deoxyguanosine Adducts by Escherichia coli OGT","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University","funders":"","keywords":"Escherichia coli; Deoxyguanosine; Oligonucleotide; Chemistry; DNA; Duplex (building); DNA damage; DNA repair; Biochemistry; Cleavage (geology); Endonuclease; Gel electrophoresis; Linker; Molecular biology; Biology; Gene","authors":[{"name":"Nadia Schoonhoven","is_ca":true},{"name":"Shona Murphy","is_ca":true},{"name":"Derek K. O’Flaherty","is_ca":true},{"name":"Anne M. Noronha","is_ca":true},{"name":"M.J. Kornblatt","is_ca":true},{"name":"Christopher J. Wilds","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01111737420148271,"gpt":0.2314415235995497,"spread":0.220324149398067,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001192186,0.0002945621,0.0004289394,0.00003708226,0.0001778074,0.0000113618,0.0001896164,0.000199818,0.00001751349],"category_scores_gemma":[0.0001520765,0.0002742849,0.000133846,0.0001186634,0.000706623,0.00002069343,0.0002916529,0.00009233406,0.000008982529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001801752,"about_ca_system_score_gemma":0.00006225833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000110078,"about_ca_topic_score_gemma":0.000004251496,"domain_scores_codex":[0.9985622,0.00008948697,0.0003238329,0.0005118019,0.0002089165,0.0003038087],"domain_scores_gemma":[0.9990613,0.00003238828,0.000140838,0.0005002492,0.0001580403,0.0001071445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001925906,0.0001277382,0.000755298,0.0001110493,0.0002293095,0.00001016198,0.0002950775,0.000001707524,0.9885669,0.0004139076,0.009244925,0.00005132002],"study_design_scores_gemma":[0.0002857405,0.0007616564,0.0006376549,0.00003289359,0.0000693854,0.00005605579,0.0003740075,0.0000181423,0.9790241,0.00006208593,0.01838335,0.0002949974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959903,0.002491084,0.0000211969,0.0004930553,0.0001751682,0.0001973494,0.00006382884,0.00009528607,0.0004726844],"genre_scores_gemma":[0.9907246,0.003680911,0.003684542,0.000196038,0.0001486828,0.00005105155,0.00002901717,0.00005576423,0.001429446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009542881,"threshold_uncertainty_score":0.9999709,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170061118","doi":"10.1093/nass/nrn037","title":"In vitro selection of a DNAzyme with three modified nucleotides","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Deoxyribozyme; In vitro; Nucleotide; Divalent; Selection (genetic algorithm); Chemistry; Biochemistry; Biophysics; Combinatorial chemistry; Biology; Computer science; DNA; Organic chemistry; Gene","authors":[{"name":"Marcel Hollenstein","is_ca":true},{"name":"Christopher J. Hipolito","is_ca":true},{"name":"Charmaine Lam","is_ca":true},{"name":"David M. Perrin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007894962774680754,"gpt":0.2224734713707024,"spread":0.2145785085960217,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007471951,0.0001793289,0.0002407303,0.00009009396,0.00008841611,0.000008413615,0.0001229282,0.0001415564,0.000002629546],"category_scores_gemma":[0.0000149009,0.0001470659,0.00007434513,0.0002458506,0.0002783404,0.00002011577,0.00005110935,0.0000901077,9.794362e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001972721,"about_ca_system_score_gemma":0.00004745401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004780395,"about_ca_topic_score_gemma":0.0001420379,"domain_scores_codex":[0.9990692,0.00003126695,0.0002328078,0.0003115376,0.0001412762,0.0002139553],"domain_scores_gemma":[0.9994778,0.000005283526,0.000114452,0.000253872,0.0001078343,0.00004077088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007766608,0.00007107604,0.003725392,0.00001421286,0.00003992879,0.000008632593,0.00005624536,0.00004865771,0.9948834,0.00006760849,0.0001298349,0.0001784005],"study_design_scores_gemma":[0.0003236269,0.0005073675,0.001976709,0.00001532313,0.00001975388,0.0001417573,0.00004449388,0.0001028545,0.9954347,0.00009411327,0.001144611,0.0001946796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974496,0.00004779432,0.001127192,0.000257758,0.00002722145,0.000125633,0.00001044648,0.00004732989,0.0009070024],"genre_scores_gemma":[0.9885404,0.0001834421,0.01065232,0.00009471658,0.00007338152,0.000009687117,0.00002822484,0.0000262226,0.0003916105],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009525125,"threshold_uncertainty_score":0.5997174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1985472103","doi":"10.1093/nass/nrn006","title":"The use of light to investigate and modulate DNA and RNA conformations","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"DNA; RNA; Computational biology; Biophysics; Chemistry; Genetics; Biology; Gene","authors":[{"name":"Dipankar Sen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01496114043188351,"gpt":0.2261673801293343,"spread":0.2112062396974508,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000584359,0.0001104526,0.0001187715,0.00003060254,0.0002692824,0.00003325326,0.00006854162,0.00007446537,2.37932e-7],"category_scores_gemma":[0.00004947187,0.00007687067,0.00003100479,0.00007801758,0.0003700935,0.00001970911,0.000115855,0.00004113724,5.141486e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003664635,"about_ca_system_score_gemma":0.00001673971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008814633,"about_ca_topic_score_gemma":0.00001884655,"domain_scores_codex":[0.9994388,0.00002459033,0.0001781872,0.0001571941,0.00007273193,0.0001285563],"domain_scores_gemma":[0.9995224,0.00001052814,0.00006980667,0.0002375273,0.00008527702,0.00007449641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004126459,0.00000581357,0.0005329199,0.000006880341,0.00002851768,8.263448e-7,0.0002106301,0.000006765353,0.9975391,0.0002351325,0.0008321283,0.0005599895],"study_design_scores_gemma":[0.00008187111,0.0001835034,0.001095811,0.00001122308,0.00001701439,0.00005306172,0.00006120317,0.00005105384,0.9226,0.00009045962,0.07564212,0.0001127342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997177,0.0001142859,0.0001646819,0.002156755,0.00002533948,0.0001018213,0.00001488793,0.00002331737,0.0002219171],"genre_scores_gemma":[0.9927484,0.001866431,0.00437443,0.0003099092,0.00003103493,0.000004688066,0.00001212452,0.00001027418,0.0006426809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07493918,"threshold_uncertainty_score":0.3134695,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971782684","doi":"10.1093/nass/3.1.217","title":"Deoxyribozymes that catalyze photochemistry: cofactor-dependent and -independent photorepair of thymine dimers","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Deoxyribozyme; Cofactor; Thymine; Chemistry; Photochemistry; Pyrimidine dimer; Photolyase; Stereochemistry; DNA; Biochemistry; Biophysics; DNA damage; DNA repair; Enzyme; Biology","authors":[{"name":"Dipankar Sen","is_ca":true},{"name":"Daniel J.‐F. Chinnapen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009106275177159291,"gpt":0.2096297482882093,"spread":0.20052347311105,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003347301,0.0004123977,0.0005250642,0.00004869682,0.0001723071,0.00009537615,0.0004328792,0.0002469366,0.001824806],"category_scores_gemma":[0.00007931465,0.0003749751,0.0001139756,0.0001247561,0.0007027431,0.0004351821,0.0001813246,0.0001951896,0.00004770208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001141377,"about_ca_system_score_gemma":0.0001551568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001185512,"about_ca_topic_score_gemma":0.000009383141,"domain_scores_codex":[0.997721,0.00005561327,0.0004477478,0.0006714833,0.0005671202,0.0005371056],"domain_scores_gemma":[0.9986364,0.0000636539,0.00028528,0.0006627256,0.00009422206,0.000257733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001215625,0.00009457765,0.006992427,0.0001968993,0.00003124159,0.00002024602,0.0008245595,0.000001304523,0.9911435,0.0001270053,0.0004365754,0.00001015724],"study_design_scores_gemma":[0.0006268076,0.00008845566,0.0007556211,0.00006894779,0.00005313112,0.0001857958,0.001876822,0.000005947959,0.9944767,0.0001240011,0.001334251,0.0004035146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869965,0.0003717612,0.00002832881,0.00007452039,0.000294906,0.0003568066,0.000147038,0.0001437215,0.01158636],"genre_scores_gemma":[0.9970428,0.0001950686,0.0007489403,0.00005636444,0.00004300734,0.00006979553,0.00002677434,0.00004629615,0.001770959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01004624,"threshold_uncertainty_score":0.9998702,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4256714406","doi":"10.1093/nass/nrn202","title":"RNA containing pyrrolocytidine base analogs: increased binding affinity and fluorescence that responds to hybridization","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; McGill University","funders":"","keywords":"Fluorescence; RNA; DNA; Duplex (building); Chemistry; Base pair; Nucleoside; Substituent; Nucleic acid; Oligonucleotide; Stereochemistry; Biophysics; Biochemistry; Biology; Gene","authors":[{"name":"A. S. Wahba","is_ca":true},{"name":"M. J. Damha","is_ca":true},{"name":"R. H.E. Hudson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01273121749216393,"gpt":0.2198991964171434,"spread":0.2071679789249795,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002360366,0.0003092237,0.0002781906,0.00009232071,0.0004065513,0.0000568692,0.0002696165,0.0002120132,0.00003903822],"category_scores_gemma":[0.0001744451,0.000316991,0.00007456962,0.0002097074,0.000265498,0.00003949915,0.0002863857,0.0001452807,0.00001483347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004149109,"about_ca_system_score_gemma":0.0001133453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003260437,"about_ca_topic_score_gemma":0.00001081138,"domain_scores_codex":[0.9984146,0.00007341334,0.0002696696,0.0005984509,0.0002325029,0.000411305],"domain_scores_gemma":[0.9989883,0.00002604839,0.0001175755,0.0004724002,0.0001081123,0.0002875447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008287858,0.00003824258,0.01821234,0.00003003469,0.0000358727,0.00004706691,0.0002795811,0.00001521278,0.9790969,0.00004412026,0.001181949,0.0001898586],"study_design_scores_gemma":[0.0007336072,0.0005412734,0.005383898,0.00004004223,0.00002844552,0.0002394518,0.000467749,0.00006528133,0.9860818,0.0000109086,0.006006715,0.0004008763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967996,0.0001405782,0.0002552588,0.0005388874,0.0001128818,0.000167176,0.00005609994,0.00007866437,0.001850816],"genre_scores_gemma":[0.9960762,0.0004424388,0.001914135,0.0004656559,0.0002084725,0.00002325604,0.0001947254,0.0000522607,0.0006228957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01282844,"threshold_uncertainty_score":0.9999282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004357150","doi":"10.1093/nass/3.1.297","title":"Inhibition of restriction enzyme's DNA sequence recognition by PUVA treatment","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Restriction enzyme; Recognition sequence; Restriction site; DNA; Enzyme; Sequence (biology); Endonuclease; Isoschizomer; Restriction map; Biology; Molecular biology; Chemistry; Biochemistry; Nucleic acid sequence; Gene","authors":[{"name":"Fujinori Hanawa","is_ca":false},{"name":"Mamoru Okamoto","is_ca":true},{"name":"G.H.N. Towers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01322769242190534,"gpt":0.2265739653055927,"spread":0.2133462728836873,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001052801,0.0001825099,0.0001514669,0.00004430166,0.00008493415,0.00002003999,0.00006006102,0.0001952021,0.00004749431],"category_scores_gemma":[0.00004102478,0.0001817563,0.00008644724,0.0001140083,0.00008548991,0.00002414521,0.00002283557,0.00004436368,0.00001905009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006620285,"about_ca_system_score_gemma":0.0000608756,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002416432,"about_ca_topic_score_gemma":0.00001131352,"domain_scores_codex":[0.9989772,0.0001046967,0.0002435261,0.0003361698,0.0001377032,0.0002006578],"domain_scores_gemma":[0.9994047,0.000006240656,0.0001332122,0.0002958426,0.00009636864,0.00006361186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008545511,0.0001052245,0.0001295327,0.00001659148,0.00002985631,0.000002404508,0.00009003427,0.000005898857,0.9979426,0.0003776587,0.0005614302,0.0006532668],"study_design_scores_gemma":[0.0004436203,0.001455399,0.00002138299,0.00001846969,0.00003331401,0.00003869537,0.0001987936,0.000004851245,0.9818816,0.0007309146,0.01499341,0.0001795806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930956,0.0001557437,0.0005408282,0.0001283998,0.0002152504,0.0002454488,0.0001146919,0.00004667853,0.005457396],"genre_scores_gemma":[0.9958931,0.0009021563,0.001672425,0.00006454461,0.00006241361,0.00005678507,0.0004823947,0.00003050119,0.0008357196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01606108,"threshold_uncertainty_score":0.7411807,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2087211829","doi":"10.1093/nass/nrn043","title":"Inhibition of Orotidine-5'-monophosphate decarboxylase - Discoveries and lessons","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"S100 Proteins and Annexins","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"","keywords":"Decarboxylation; Enzyme; Uridine; Chemistry; Biochemistry; Context (archaeology); Biology; RNA; Catalysis; Gene","authors":[{"name":"Lakshmi P. Kotra","is_ca":false},{"name":"E.F. Pai","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009477097264801998,"gpt":0.2222667411989821,"spread":0.2127896439341801,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005755098,0.0001695681,0.0001844351,0.00003328651,0.0001570811,0.00001851616,0.00007795374,0.0001174866,0.00001571539],"category_scores_gemma":[0.00002363403,0.0001557407,0.00006608628,0.00007703847,0.0003474865,0.00002714798,0.0001035524,0.0000562479,0.0000023653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006423925,"about_ca_system_score_gemma":0.00005112009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003005768,"about_ca_topic_score_gemma":0.00002226808,"domain_scores_codex":[0.9992085,0.00002673292,0.0001978384,0.000273497,0.0001044227,0.0001889717],"domain_scores_gemma":[0.9995267,0.000004507418,0.00008913415,0.0002458078,0.00006252872,0.00007133314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002037157,0.00005603199,0.003626087,0.00002793167,0.00002479104,0.00001013283,0.0003130035,0.00001059107,0.9935489,0.001531005,0.0003292625,0.0003184952],"study_design_scores_gemma":[0.0004318685,0.0007327299,0.00770037,0.00002796662,0.0000155088,0.00008214491,0.0002233092,0.000006647017,0.9830488,0.0002522711,0.007273182,0.0002052274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964178,0.0006328285,0.0001244341,0.0006661511,0.00006546822,0.0001421259,0.00004442716,0.00002102784,0.001885726],"genre_scores_gemma":[0.9962622,0.001948382,0.0007630299,0.0001274204,0.000102274,0.00001697391,0.00005760973,0.00002219012,0.0006999531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01050018,"threshold_uncertainty_score":0.635092,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1986869555","doi":"10.1093/nass/44.1.89","title":"Evaluation of nucleotide derivatives and sugar nucleotide analogs as inhibitors of glycosyltransferases","year":2000,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Glycosyltransferase; Nucleotide; Uridine; Nucleotide sugar; Biochemistry; Nucleoside; Chemistry; Sugar; Uridine diphosphate; Uridine diphosphate glucose; Enzyme; RNA; Gene","authors":[{"name":"Kazuoki Osumi","is_ca":false},{"name":"N. Kawauchi","is_ca":true},{"name":"Aidan Lu","is_ca":false},{"name":"Ole Hindsgaul","is_ca":false},{"name":"Monica M. Palcic","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01217168758651293,"gpt":0.2679479815572482,"spread":0.2557762939707353,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005433891,0.0001971133,0.0002571233,0.0001032495,0.0001032751,0.00002501923,0.0001734141,0.0001449374,0.0009044444],"category_scores_gemma":[0.0001743976,0.0001902874,0.00009448866,0.000205729,0.0004466422,0.00003529336,0.00005708159,0.00008898566,0.00001306767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001798538,"about_ca_system_score_gemma":0.0001624835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001282582,"about_ca_topic_score_gemma":0.00007848388,"domain_scores_codex":[0.9981488,0.0002402615,0.0003994224,0.000349272,0.0006252181,0.0002370413],"domain_scores_gemma":[0.998967,0.00002124189,0.00009547923,0.0003453345,0.0004694101,0.0001015187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004211707,0.0001024834,0.004406973,0.00006797357,0.00009769271,0.000001613805,0.0004592149,0.0001950389,0.9831284,0.0003878247,0.0001959439,0.01053567],"study_design_scores_gemma":[0.001060083,0.001008369,0.01205896,0.00005451597,0.00007715526,0.00002052302,0.0004662193,0.0001765118,0.975903,0.0004290871,0.008525603,0.0002199666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890152,0.0005162822,0.00001788368,0.0003823331,0.00004126098,0.0004045325,0.00004315966,0.00001580681,0.009563512],"genre_scores_gemma":[0.9979007,0.001008513,0.0004024855,0.000052905,0.00006369066,0.00002291214,0.00006044832,0.00003122506,0.0004571425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01031571,"threshold_uncertainty_score":0.9903032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137341681","doi":"10.1093/nass/nrm179","title":"Enzymatic Incorporation of 2-Amino-6-Vinylpurine Derivative","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Nucleoside; Nucleotide; Cytidine; Purine; DNA; Chemistry; Biochemistry; Enzyme; Nucleic acid; Duplex (building); RNA; Polymerase; Nucleobase; Nucleoside triphosphate; Derivative (finance); Stereochemistry; Combinatorial chemistry; Gene","authors":[{"name":"Shion Imoto","is_ca":true},{"name":"Md. Moksed Ali","is_ca":true},{"name":"Yong Li","is_ca":true},{"name":"Shigeki Sasaki","is_ca":true},{"name":"Fumi Nagatsugi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005747743931011248,"gpt":0.2227924982859097,"spread":0.2170447543548985,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002476172,0.0002240182,0.000232071,0.00005163374,0.00008786114,0.0000173924,0.0002576525,0.000220587,0.00006206978],"category_scores_gemma":[0.00006961194,0.0002201616,0.00009769304,0.0001538874,0.000273853,0.00002094882,0.0001587644,0.00009652242,0.00001374526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002366154,"about_ca_system_score_gemma":0.00005764932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008162484,"about_ca_topic_score_gemma":0.00001497839,"domain_scores_codex":[0.9987373,0.00002440055,0.000424377,0.0003160097,0.0002103721,0.0002874979],"domain_scores_gemma":[0.9990377,0.0000157211,0.0002400155,0.0004470475,0.0001593946,0.000100164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002319066,0.00007975529,0.005769993,0.00008672,0.00005396709,0.00000521259,0.000256355,0.000008236857,0.9917105,0.0005473592,0.000730235,0.0005197426],"study_design_scores_gemma":[0.0004097353,0.0003716912,0.004346279,0.00002475261,0.00002516218,0.0000418432,0.0004856314,0.000008974811,0.9834821,0.0002582239,0.01030682,0.0002388131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9827286,0.0001430197,0.002125918,0.0002058766,0.0001573321,0.0001425863,0.00001757606,0.00003511569,0.01444399],"genre_scores_gemma":[0.994126,0.0000821849,0.003495499,0.0001288944,0.0002546587,0.00000837192,0.0001391569,0.00003814526,0.001727081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01271691,"threshold_uncertainty_score":0.8977928,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1973368784","doi":"10.1093/nass/nrn046","title":"Preparation of Mannosylated Oligoribonucleotides","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"","keywords":"Endocytosis; Chemistry; Mannose; Conjugate; Biochemistry; Receptor","authors":[{"name":"Yu Zhao","is_ca":true},{"name":"Hai Yan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009656303165379104,"gpt":0.2462205562330787,"spread":0.2365642530676996,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005138128,0.0001361499,0.0001497622,0.00004046655,0.00009188494,0.000009648202,0.0001692726,0.0001250185,0.0000462608],"category_scores_gemma":[0.00001732441,0.00013112,0.00008396871,0.00008066396,0.0001708988,0.00001759697,0.00007581084,0.00004648439,0.00003409415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000702319,"about_ca_system_score_gemma":0.00004792655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000194898,"about_ca_topic_score_gemma":0.00001261972,"domain_scores_codex":[0.9992234,0.00002987193,0.0002349308,0.0002359833,0.0001111902,0.0001645964],"domain_scores_gemma":[0.9994125,0.000003503688,0.00009173301,0.0003125731,0.0001354267,0.00004422754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002675201,0.00004415297,0.005494013,0.00001549794,0.00004613346,0.00000442529,0.000324323,0.00006725219,0.9900314,0.0001331339,0.003449383,0.0001227218],"study_design_scores_gemma":[0.0002101452,0.0008645096,0.005928548,0.00001210857,0.00001328261,0.00008346237,0.0001061981,0.00002676614,0.9752851,0.00004989221,0.0172618,0.0001582238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930533,0.0002396647,0.0001211933,0.0001227817,0.0001614854,0.0001031542,0.00001609494,0.00002505328,0.006157227],"genre_scores_gemma":[0.9957318,0.0008924046,0.0004782097,0.00008529577,0.0001259367,0.000009517486,0.00008447275,0.0000186778,0.002573729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01474638,"threshold_uncertainty_score":0.5346919,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151324457","doi":"10.1093/nass/nrn241","title":"Toward the discovery of new antifungal agents: The design and validation of a novel 2'P-RNA probe and high throughput screening assay against 2'-phosphotransferase Tpt1p","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Phosphoramidite; Synthon; Chemistry; Regioselectivity; RNA; Silylation; Combinatorial chemistry; Phosphotransferase; Stereochemistry; Ligand (biochemistry); Chemical library; Biochemistry; Oligonucleotide; Enzyme; Receptor; Catalysis","authors":[{"name":"Jeremy G. Lackey","is_ca":true},{"name":"David Ron","is_ca":true},{"name":"M. J. Damha","is_ca":true},{"name":"Heather P. Harding","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02937140009681996,"gpt":0.2305558520387627,"spread":0.2011844519419427,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003925191,0.0001929544,0.0002211546,0.00002066711,0.0001983502,0.00004386442,0.0002131071,0.0001293066,0.000005494389],"category_scores_gemma":[0.00005719644,0.0001214294,0.00007088487,0.00008323917,0.0003485401,0.00004713392,0.0001085716,0.00007686835,2.450824e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004602234,"about_ca_system_score_gemma":0.00007578085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007842407,"about_ca_topic_score_gemma":0.000002634195,"domain_scores_codex":[0.9989347,0.0001403245,0.0002782462,0.0002784867,0.0001929704,0.0001753121],"domain_scores_gemma":[0.9993744,0.00005451519,0.000140595,0.0003234888,0.00006332052,0.00004363958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000319135,0.00004000411,0.0005302012,0.00004369438,0.00008915778,0.000001657256,0.001402665,0.000155534,0.9956867,0.0006004769,0.0001203472,0.001010411],"study_design_scores_gemma":[0.0005494636,0.0003545473,0.001157467,0.00005492779,0.00005263252,0.00004060104,0.0003854656,0.00007998531,0.9964641,0.000155614,0.0005549202,0.0001503213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7931592,0.0005697729,0.2046717,0.0009673759,0.00006845803,0.0004309176,0.00002940378,0.000008389134,0.000094787],"genre_scores_gemma":[0.985366,0.001997428,0.01210761,0.0001534644,0.00007673573,0.00001992894,0.00002075582,0.00002655594,0.0002315638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1925641,"threshold_uncertainty_score":0.4951748,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109531509","doi":"10.1093/nass/49.1.55","title":"Characterization of a fluorescence-signaling and RNA-cleaving deoxyribozyme","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Symposium Series","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Deoxyribozyme; DNA; RNA; Biochemistry; Chemistry; Biology; Biophysics; Gene","authors":[{"name":"Yutu Shen","is_ca":true},{"name":"John D. Brennan","is_ca":false},{"name":"Yingfu Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005660866314852044,"gpt":0.2235805950589724,"spread":0.2179197287441204,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051482,0.0001456348,0.0001705724,0.0000523275,0.00009446288,0.00002669516,0.0000984576,0.0001289987,0.000003198855],"category_scores_gemma":[0.00002212049,0.0001342269,0.00005940508,0.0000955643,0.0001611356,0.00002269666,0.00008548226,0.00005828686,9.901327e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001017862,"about_ca_system_score_gemma":0.00001782071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003221928,"about_ca_topic_score_gemma":0.000006252063,"domain_scores_codex":[0.9991969,0.00003091592,0.000235458,0.0002647307,0.0001055304,0.0001664098],"domain_scores_gemma":[0.9995097,0.000004216933,0.0001314304,0.0002140291,0.00009135898,0.00004927477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006209956,0.00002286711,0.0008951782,0.00001832587,0.00002516826,6.565463e-7,0.00009360944,0.000002737374,0.9937469,0.00009876069,0.00001749955,0.005016151],"study_design_scores_gemma":[0.0001193108,0.0001589175,0.0008958461,0.00003719453,0.00002812014,0.00002046544,0.00006892202,0.00007731071,0.9940363,0.0000256794,0.004371812,0.0001601773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977446,0.00007647517,0.00125578,0.0004683876,0.00002780849,0.00008268488,0.00001512527,0.00004460302,0.0002845398],"genre_scores_gemma":[0.9833256,0.0005100066,0.01551631,0.0001144568,0.0001921957,0.000003822255,0.00007209368,0.00002029428,0.0002452501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01441902,"threshold_uncertainty_score":0.5473616,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}