{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":84,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":84,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"2e1fb5401361","filters":{"venue":"OMICS A Journal of Integrative Biology"}},"results":[{"id":"W1964622469","doi":"10.1089/15362310260256882","title":"Nontargeted Metabolome Analysis by Use of Fourier Transform Ion Cyclotron Mass Spectrometry","year":2002,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":423,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Phenomenome Discoveries (Canada)","funders":"","keywords":"Metabolome; Mass spectrometry; Fourier transform ion cyclotron resonance; Atmospheric-pressure chemical ionization; Metabolomics; Metabolite; Electrospray ionization; Chemistry; Chromatography; Analytical Chemistry (journal); Ionization; Biology; Computational biology; Chemical ionization; Ion; Biochemistry","authors":[{"name":"Asaph Aharoni","is_ca":false},{"name":"C. H. Ric De Vos","is_ca":false},{"name":"H. A. Verhoeven","is_ca":false},{"name":"Chris Maliepaard","is_ca":false},{"name":"Gary Kruppa","is_ca":false},{"name":"R.J. Bino","is_ca":false},{"name":"Dayan B. Goodenowe","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01347246156140585,"gpt":0.2455884900295168,"spread":0.232116028468111,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003941194,0.0003106397,0.0009954169,0.0005627623,0.00005967131,0.00001973449,0.0003044034,0.00021578,0.0002028708],"category_scores_gemma":[0.0003272525,0.0002137239,0.0007097422,0.0006430978,0.0002252927,0.00001747637,0.00004472676,0.0002879438,0.000002065817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005073503,"about_ca_system_score_gemma":0.00003179362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004184537,"about_ca_topic_score_gemma":0.00005934899,"domain_scores_codex":[0.9982177,0.0001846973,0.000812822,0.0003010024,0.0001519638,0.0003318422],"domain_scores_gemma":[0.9983463,0.00008140678,0.0007639157,0.0002654998,0.0004299398,0.0001129709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002675828,0.0001564605,0.005826433,0.000004640198,0.00394555,0.000003124283,0.00009040102,0.00002538855,0.9864251,0.001082978,0.001419108,0.0007532366],"study_design_scores_gemma":[0.001194856,0.002022112,0.001959945,0.0000091872,0.001085595,0.00003484802,0.0002340238,0.0003587955,0.9363834,0.0004453224,0.05592152,0.0003503471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9079083,0.007420398,0.08305402,0.0003652099,0.0003032971,0.000129175,0.0003000473,0.00000344141,0.0005160609],"genre_scores_gemma":[0.964921,0.01286977,0.0212481,0.0001137603,0.0001701858,0.000004468265,0.00009920618,0.00002186279,0.0005516472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06180592,"threshold_uncertainty_score":0.8715408,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996707390","doi":"10.1089/omi.2008.0031","title":"Genetic Variation in Taste and Its Influence on Food Selection","year":2008,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Biochemical Analysis and Sensing Techniques","field":"Nursing","cited_by":297,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canada Research Chairs","keywords":"Selection (genetic algorithm); Variation (astronomy); Taste; Genetic variation; Biology; Evolutionary biology; Genetics; Gene; Computer science; Food science; Artificial intelligence","authors":[{"name":"Bibiana García‐Bailo","is_ca":true},{"name":"Clare Toguri","is_ca":true},{"name":"Karen Eny","is_ca":true},{"name":"Ahmed El‐Sohemy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02904613454663807,"gpt":0.32076881510753,"spread":0.291722680560892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001809817,0.0002533814,0.001152033,0.0004760396,0.00003791529,0.00001634732,0.000130597,0.0004328528,0.000002350178],"category_scores_gemma":[0.0004375914,0.0001551583,0.0002329293,0.0002920451,0.00006197226,0.00003898248,0.00002015295,0.0007717574,0.000001436217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002421339,"about_ca_system_score_gemma":0.00007083645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001455338,"about_ca_topic_score_gemma":0.00002355183,"domain_scores_codex":[0.9984143,0.0004045019,0.0007679965,0.0002079668,0.00006789553,0.0001372868],"domain_scores_gemma":[0.9984001,0.0002416504,0.0009708335,0.00006800635,0.0002761243,0.00004328801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001777383,0.0001284218,0.0000658611,0.0004005645,0.0003239501,0.00001083467,0.0003599241,0.000006273903,0.006020868,0.0016251,0.0001657027,0.9907148],"study_design_scores_gemma":[0.001959337,0.02409773,0.001392011,0.05000118,0.00224379,0.007327585,0.00008767709,0.001850978,0.0115748,0.03039121,0.8665862,0.002487481],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02812493,0.9711151,0.000305647,0.00007901639,0.0001485473,0.0001695957,0.00001302725,0.000007531261,0.00003657413],"genre_scores_gemma":[0.0213568,0.9765707,0.001840289,0.00008065369,0.0001247753,0.000002892417,0.000005879374,0.00001476653,0.000003305192],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9882273,"threshold_uncertainty_score":0.632717,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3087321612","doi":"10.1089/omi.2020.0085","title":"Digital Health in Physicians' and Pharmacists' Office: A Comparative Study of e-Prescription Systems' Architecture and Digital Security in Eight Countries","year":2020,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Electronic Health Records Systems","field":"Health Professions","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Dalhousie University","funders":"","keywords":"Medical prescription; eHealth; Pharmacy; Business; Health care; Digital health; Medicine; Medical emergency; Internet privacy; Computer security; Family medicine; Nursing; Computer science; Political science","authors":[{"name":"Bader Aldughayfiq","is_ca":true},{"name":"Srinivas Sampalli","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06224989752911265,"gpt":0.4549412359822127,"spread":0.3926913384531001,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00133587,0.0005551602,0.00521744,0.0006570554,0.0001215802,0.00004269297,0.0002964998,0.0004091864,0.000002718546],"category_scores_gemma":[0.00035638,0.0003636334,0.0001482306,0.0004578373,0.0002405964,0.0002410822,0.0001407412,0.003461179,0.000002635235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001115142,"about_ca_system_score_gemma":0.002685453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002408913,"about_ca_topic_score_gemma":0.0008654183,"domain_scores_codex":[0.9917303,0.003682557,0.003391963,0.0004474898,0.0001809694,0.0005667113],"domain_scores_gemma":[0.9928603,0.00209896,0.004308077,0.0001613793,0.0003724037,0.0001988495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003010955,0.002003367,0.01602778,0.06381319,0.001827286,0.0001548481,0.2335285,0.000005935248,0.000009132659,0.004010622,0.001445486,0.6741629],"study_design_scores_gemma":[0.004771132,0.007112234,0.0001470741,0.04317822,0.0001475226,0.0003730468,0.05201221,0.0001366786,4.744558e-7,0.0004149186,0.8911365,0.0005700088],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03808518,0.9556248,0.000121015,0.0001871325,0.0006513898,0.003777272,0.001330003,0.000007216573,0.0002160299],"genre_scores_gemma":[0.1368363,0.8625478,0.00001434279,0.00007129221,0.0002836683,0.00009382123,0.00008601395,0.00003295828,0.00003382557],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.889691,"threshold_uncertainty_score":0.9998816,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1975957527","doi":"10.1089/omi.2006.10.231","title":"Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"National Institute of General Medical Sciences","keywords":"Phylogenomics; Phylogenetic tree; Phylogenetics; Biology; Genomics; Phylogenetic network; Evolutionary biology; Genome; Phylogenetic diversity; Supermatrix; Computational biology; Data science; Gene; Genetics; Computer science; Clade","authors":[{"name":"Jim Leebens‐Mack","is_ca":false},{"name":"Todd Vision","is_ca":false},{"name":"Eric D. Brenner","is_ca":false},{"name":"John Bowers","is_ca":false},{"name":"Steven B. Cannon","is_ca":false},{"name":"Mark Clement","is_ca":false},{"name":"Cliff Cunningham","is_ca":false},{"name":"Claude W. dePamphilis","is_ca":false},{"name":"Rob DeSalle","is_ca":false},{"name":"Jeff J. Doyle","is_ca":false},{"name":"Jonathan A. Eisen","is_ca":false},{"name":"Xun Gu","is_ca":false},{"name":"John Harshman","is_ca":false},{"name":"Robert K. Jansen","is_ca":false},{"name":"Elizabeth A. Kellogg","is_ca":false},{"name":"Eugene V. Koonin","is_ca":false},{"name":"Brent D. Mishler","is_ca":false},{"name":"Hervé Philippe","is_ca":true},{"name":"J. Chris Pires","is_ca":false},{"name":"Yin‐Long Qiu","is_ca":false},{"name":"Seung Y. Rhee","is_ca":false},{"name":"Kimmen Sjölander","is_ca":false},{"name":"Pamela S. Soltis","is_ca":false},{"name":"Dennis Wm. Stevenson","is_ca":false},{"name":"Kerr Wall","is_ca":false},{"name":"Tandy Warnow","is_ca":false},{"name":"Christian M. Zmasek","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03650009560321178,"gpt":0.3414475756994088,"spread":0.304947480096197,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00141233,0.0006403247,0.002274201,0.0004447255,0.0002740107,0.00008929359,0.0006759336,0.0005286225,0.000005888044],"category_scores_gemma":[0.00159382,0.0003546931,0.002147738,0.0003877554,0.0002215169,0.000002980697,0.0001609583,0.0004190619,0.000001340421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000157897,"about_ca_system_score_gemma":0.0006580469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003141471,"about_ca_topic_score_gemma":0.000202842,"domain_scores_codex":[0.9959334,0.000222034,0.002871632,0.0003867767,0.0001702608,0.000415885],"domain_scores_gemma":[0.9886386,0.0002619674,0.009592198,0.0004624953,0.0009759392,0.00006883233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005692527,0.00009324007,0.0003504168,0.001190643,0.01338938,0.000007110424,0.0006625532,0.0004973918,0.001003445,0.000713504,0.001602666,0.9799204],"study_design_scores_gemma":[0.0004524633,0.001824149,0.0002014253,0.0005747142,0.002790046,0.00008079155,0.0002541148,0.00003220656,0.0004697291,0.0001365365,0.9927851,0.0003987145],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007843891,0.9796594,0.009236518,0.0001009718,0.0006469826,0.0009354381,0.001023007,0.000002539804,0.0005512433],"genre_scores_gemma":[0.02708731,0.9693081,0.00189834,0.0002171083,0.000850394,0.0001443697,0.0004014774,0.00004686997,0.00004602782],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9911824,"threshold_uncertainty_score":0.9998905,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068768700","doi":"10.1089/omi.2006.10.199","title":"Development of FuGO: An Ontology for Functional Genomics Investigations","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; Natural Environment Research Council; National Human Genome Research Institute; Biotechnology and Biological Sciences Research Council; National Institutes of Health","keywords":"Ontology; Genomics; Functional genomics; Gene ontology; Data science; Computer science; Computational biology; Knowledge management; Biology; Genome; Genetics; Gene; Epistemology; Philosophy","authors":[{"name":"Patricia L. Whetzel","is_ca":false},{"name":"Ryan R. Brinkman","is_ca":true},{"name":"Helen C. Causton","is_ca":false},{"name":"Liju Fan","is_ca":false},{"name":"Dawn Field","is_ca":false},{"name":"Jennifer Fostel","is_ca":false},{"name":"Gilberto Fragoso","is_ca":false},{"name":"Tanya Gray","is_ca":false},{"name":"Mervi Heiskanen","is_ca":false},{"name":"Tina Hernandez‐Boussard","is_ca":false},{"name":"Norman Morrison","is_ca":false},{"name":"Helen Parkinson","is_ca":false},{"name":"Philippe Rocca‐Serra","is_ca":false},{"name":"Susanna‐Assunta Sansone","is_ca":false},{"name":"Daniel Schober","is_ca":false},{"name":"Barry Smith","is_ca":false},{"name":"Robert Stevens","is_ca":false},{"name":"Christian J. Stoeckert","is_ca":false},{"name":"Chris Taylor","is_ca":false},{"name":"Joe White","is_ca":false},{"name":"Andrew J. Wood","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09581901281397573,"gpt":0.3718821284710488,"spread":0.2760631156570731,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005554747,0.0003456909,0.001366012,0.0002257549,0.00007781529,0.00000899556,0.0004203192,0.0008447745,0.000006574152],"category_scores_gemma":[0.0005536158,0.0002248293,0.000500839,0.00009368266,0.0005175888,0.000003287925,0.0000752202,0.0003253083,0.000001112949],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009960009,"about_ca_system_score_gemma":0.002228641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004386193,"about_ca_topic_score_gemma":0.0001131778,"domain_scores_codex":[0.9978727,0.0002120456,0.001311736,0.0002974417,0.0000704889,0.0002355994],"domain_scores_gemma":[0.9974248,0.000176794,0.001573344,0.0001990695,0.0005216519,0.0001043637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001287441,0.0001802359,0.00003510643,0.0005868167,0.0008575498,0.000001699516,0.0001403277,0.000002541103,0.006562038,0.00253246,0.002028191,0.9869443],"study_design_scores_gemma":[0.0003446896,0.000988355,0.00001223793,0.0003843617,0.0002040179,0.0001077018,0.0001343078,0.000004824823,0.001280051,0.0005204962,0.9958056,0.000213352],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002163175,0.9303671,0.06610538,0.00003708661,0.0007039623,0.0002669354,0.0002509725,0.000004107865,0.0001012889],"genre_scores_gemma":[0.00009103227,0.7867618,0.2101991,0.00007665774,0.0007433327,0.00005356159,0.001849624,0.00004040811,0.0001844727],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9937774,"threshold_uncertainty_score":0.9168273,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005132411","doi":"10.1089/omi.2006.10.474","title":"Microarray Studies of Gene Expression in Fish","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences","funders":"","keywords":"Zebrafish; DNA microarray; Biology; Microarray; Catfish; Computational biology; Model organism; Fish <Actinopterygii>; Gene expression; Transcriptome; Gene chip analysis; Amplicon; Genetics; Gene; Bioinformatics; Fishery; Polymerase chain reaction","authors":[{"name":"Susan E. Douglas","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04061576224005654,"gpt":0.3570390522625516,"spread":0.316423290022495,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004453083,0.0003150459,0.001440456,0.0002337463,0.00002323801,0.000005110849,0.0002896926,0.0004654459,0.000002867771],"category_scores_gemma":[0.0002668772,0.0001851433,0.0004963101,0.0001254205,0.0002503348,0.000002352012,0.00008845107,0.0003366824,6.456669e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005765155,"about_ca_system_score_gemma":0.0002699969,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005240615,"about_ca_topic_score_gemma":0.0000327183,"domain_scores_codex":[0.9980847,0.000286283,0.001086103,0.0003119493,0.00006284697,0.0001680803],"domain_scores_gemma":[0.9977686,0.00004384003,0.001461583,0.0002169973,0.000475339,0.00003360505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001885208,0.0002322398,0.000164923,0.001281334,0.0007429858,0.0000138361,0.0001456551,0.00001297223,0.8144118,0.00008861628,0.003618524,0.1790986],"study_design_scores_gemma":[0.0002546781,0.001023887,0.00001291695,0.001953285,0.0001361834,0.0001672173,0.0001679705,2.533839e-7,0.1155482,0.00008271768,0.8804495,0.0002032457],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004661279,0.9938505,0.0006231889,0.00001893183,0.0005047485,0.0001742118,0.00007038733,8.133489e-7,0.00009589536],"genre_scores_gemma":[0.0005573297,0.9957159,0.002733267,0.00001572911,0.0005579629,0.000007095866,0.0001142969,0.00002506501,0.0002733533],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8768309,"threshold_uncertainty_score":0.7549924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026711456","doi":"10.1089/omi.2010.0073","title":"Validation of the Use of Peripheral Blood Mononuclear Cells as Surrogate Model for Skeletal Muscle Tissue in Nutrigenomic Studies","year":2010,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Genomics; University of Guelph; McGill University and Génome Québec Innovation Centre; Université Laval","funders":"Canadian Institutes of Health Research; Health Canada; Canada Research Chairs; Advanced Foods and Materials Network; University of Guelph; Pfizer","keywords":"Peripheral blood mononuclear cell; Transcriptome; Gene expression; Biology; Polyunsaturated fatty acid; Gene; Immunology; Medicine; Bioinformatics; Internal medicine; Fatty acid; In vitro; Genetics; Biochemistry","authors":[{"name":"Iwona Rudkowska","is_ca":true},{"name":"Catherine Raymond","is_ca":true},{"name":"André Ponton","is_ca":true},{"name":"Hélène Jacques","is_ca":true},{"name":"Charles Lavigne","is_ca":true},{"name":"Bruce J. Holub","is_ca":true},{"name":"André Marette","is_ca":true},{"name":"Marie‐Claude Vohl","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02556162374302217,"gpt":0.2962577756063062,"spread":0.2706961518632841,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002042477,0.0001231999,0.0002765438,0.00006448545,0.00003248212,0.000006481898,0.0001930615,0.0001353686,0.000004818426],"category_scores_gemma":[0.0003267241,0.00008203244,0.000177597,0.00004479382,0.0002687632,0.000007593735,0.00005094527,0.0001279397,1.770113e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001397501,"about_ca_system_score_gemma":0.0001697667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001853131,"about_ca_topic_score_gemma":0.0001085341,"domain_scores_codex":[0.9991565,0.00009622453,0.0004423128,0.0001349042,0.0000476967,0.0001223582],"domain_scores_gemma":[0.998723,0.0000523669,0.0004436708,0.0001585825,0.0005818545,0.00004057289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002852149,0.0002052106,0.0008926973,0.00001948272,0.0001061035,4.363849e-7,0.0004330974,0.0008670092,0.9962237,0.00049266,0.0001120782,0.0003622343],"study_design_scores_gemma":[0.001308382,0.0008438461,0.0003368593,0.00002229513,0.00005460329,0.000007961273,0.000390885,0.0006991815,0.9923308,0.002486475,0.001428868,0.00008984029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971338,0.0006718999,0.001464486,0.00007899757,0.0002613088,0.0002033906,0.0001749165,6.979682e-7,0.0000105263],"genre_scores_gemma":[0.9933515,0.001128781,0.005236159,0.00005108219,0.0001088648,0.000005710068,0.00001758642,0.00001215349,0.00008819273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003892973,"threshold_uncertainty_score":0.3345186,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2035037267","doi":"10.1089/omi.2006.10.507","title":"Clustering Methods for Microarray Gene Expression Data","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Atlantic Cancer Research Institute","funders":"","keywords":"Cluster analysis; Microarray analysis techniques; Expression (computer science); Microarray databases; Genomics; Gene chip analysis; Computational biology; Gene expression profiling; Gene; Gene expression; Data mining; Microarray; Computer science; DNA microarray; Biology; Bioinformatics; Genetics; Genome; Artificial intelligence","authors":[{"name":"Nabil Belacel","is_ca":false},{"name":"Qian Wang","is_ca":false},{"name":"Miroslava Čuperlović‐Culf","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.106696775626847,"gpt":0.4588524888198542,"spread":0.3521557131930072,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000989817,0.0003955399,0.001194376,0.0002067233,0.00007110685,0.00003091965,0.001168573,0.0006334228,0.00000793754],"category_scores_gemma":[0.0004297525,0.000243392,0.0005120902,0.0001004536,0.0001046213,0.00000694247,0.0003342126,0.0003347399,0.000001209973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006952232,"about_ca_system_score_gemma":0.0005400968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002433734,"about_ca_topic_score_gemma":0.00000492017,"domain_scores_codex":[0.9975871,0.0006014773,0.0009999084,0.0005288391,0.00005329791,0.0002293765],"domain_scores_gemma":[0.9969983,0.0001338195,0.001676728,0.0007409594,0.0003679556,0.00008219861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007572465,0.00003562002,0.000001107399,0.0003156737,0.0001568484,5.323304e-7,0.00001075204,0.000001448426,0.3487825,0.0000264533,0.009410139,0.6411832],"study_design_scores_gemma":[0.0003096104,0.0003076446,2.602774e-7,0.0009721801,0.0001992745,0.0001119171,0.00003195068,0.00002596666,0.04881681,0.00007021408,0.9489199,0.0002342913],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000003851078,0.5729698,0.4258889,0.00001711177,0.0006129217,0.0002182194,0.000214992,0.000001764587,0.00007243946],"genre_scores_gemma":[0.000005428426,0.7931044,0.2035358,0.00004275445,0.0008896818,0.00003484825,0.001981186,0.00004227605,0.000363694],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9395097,"threshold_uncertainty_score":0.9925237,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005197587","doi":"10.1089/omi.2006.10.444","title":"Genome Wide Gene Expression Studies in Mood Disorders","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Douglas Mental Health University Institute","funders":"McGill University","keywords":"Bipolar disorder; Mood disorders; Schizophrenia (object-oriented programming); Microarray; Mood; Depression (economics); Phenotype; Confounding; Gene; Biology; Bioinformatics; Psychiatry; Genetics; Psychology; Medicine; Gene expression; Anxiety; Pathology","authors":[{"name":"Adolfo Sequeira","is_ca":true},{"name":"Gustavo Turecki","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04392931819629846,"gpt":0.3693045183020447,"spread":0.3253752001057462,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003689819,0.0004110282,0.001287985,0.0003562417,0.0000431745,0.00001243088,0.0004499213,0.000502674,0.000007002005],"category_scores_gemma":[0.000303372,0.0002508747,0.0004955055,0.0001890012,0.0002086851,0.000005136933,0.0001296593,0.000450256,0.000002964038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001510451,"about_ca_system_score_gemma":0.0003750966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004384676,"about_ca_topic_score_gemma":0.0000742734,"domain_scores_codex":[0.9979015,0.0003805016,0.001018291,0.000378004,0.0000871987,0.0002344934],"domain_scores_gemma":[0.998044,0.00008135165,0.001282738,0.0002810921,0.0002478365,0.00006302977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00056146,0.0007947803,0.001141451,0.002777454,0.001861413,0.00002444045,0.0006680994,0.00006637956,0.4272662,0.0005227393,0.01173197,0.5525836],"study_design_scores_gemma":[0.0004220554,0.0004334816,0.00004422662,0.001545193,0.00009478218,0.00005270152,0.0002587172,5.592927e-7,0.004969611,0.0004196232,0.9914744,0.0002845995],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00098358,0.9946474,0.003139199,0.00004175967,0.000581856,0.0002489944,0.00004282454,0.00000235337,0.0003120413],"genre_scores_gemma":[0.001778709,0.9960298,0.001220096,0.00002971825,0.0003892095,0.00004433412,0.0002480045,0.00003558429,0.0002245607],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9797425,"threshold_uncertainty_score":0.9999943,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993989189","doi":"10.1089/omi.2006.10.289","title":"Carbohydrate Microarrays: Survey of Fabrication Techniques","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Atlantic Cancer Research Institute","funders":"Atlantic Canada Opportunities Agency","keywords":"Glycome; Glycan; DECIPHER; DNA microarray; Computational biology; Glycomics; Genome; Biology; Computer science; Gene; Bioinformatics; Biochemistry; Glycoprotein; Gene expression","authors":[{"name":"Adrian S. Culf","is_ca":true},{"name":"Miroslava Čuperlović‐Culf","is_ca":true},{"name":"Rodney J. Ouellette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04425741541280039,"gpt":0.372106555273517,"spread":0.3278491398607167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001066144,0.0003256862,0.001286761,0.0003943928,0.00003194492,0.00001578639,0.0005270686,0.0006118284,0.00001545417],"category_scores_gemma":[0.0009431617,0.0002099888,0.0004798637,0.0003037896,0.000240217,0.000004048477,0.0000961339,0.0004579524,0.000003211406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007825619,"about_ca_system_score_gemma":0.0008227662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000272887,"about_ca_topic_score_gemma":0.0001700723,"domain_scores_codex":[0.9973721,0.0009181361,0.001132961,0.0002609495,0.0001113913,0.0002044919],"domain_scores_gemma":[0.9959883,0.0001119432,0.00170998,0.0002994589,0.001825321,0.00006500796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001933921,0.0001952643,0.0002721632,0.0008842898,0.0006794388,0.000005685258,0.00002669939,0.000001074959,0.1140323,0.0002811069,0.003844663,0.879584],"study_design_scores_gemma":[0.0001521302,0.0008276675,0.00004696338,0.0007534139,0.00008059359,0.00005470252,0.00000988618,0.000002055224,0.03981814,0.0000576896,0.9579891,0.0002076819],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007769681,0.9927506,0.00491774,0.00001169201,0.0001878406,0.000401098,0.0003573434,0.000002940139,0.000593708],"genre_scores_gemma":[0.001440644,0.9951488,0.001738215,0.00001295572,0.0002262867,0.0000190982,0.00105951,0.00003378948,0.0003207077],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9541444,"threshold_uncertainty_score":0.8563097,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2893353983","doi":"10.1089/omi.2018.0143","title":"The Dark Side of the Moon: The Internet of Things, Industry 4.0, and The Quantified Planet","year":2018,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Legal, Health, Environmental and COVID-19 Challenges","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Multiple Sclerosis Society of Canada","funders":"","keywords":"Big data; Automation; Data science; Computer science; Computer security; Engineering","authors":[{"name":"Vural Özdemir","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04743187389953125,"gpt":0.3428739354390984,"spread":0.2954420615395672,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001940693,0.000324482,0.001536037,0.00005959934,0.000137254,0.00001516837,0.00082079,0.0005318862,0.0000242748],"category_scores_gemma":[0.0006029851,0.00008500232,0.0004069358,0.00009776323,0.002907068,0.00002967109,0.0002257704,0.002467739,0.000002692013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001062051,"about_ca_system_score_gemma":0.0005446204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002216185,"about_ca_topic_score_gemma":0.0001011183,"domain_scores_codex":[0.9970428,0.001198616,0.001180207,0.0001858933,0.0001916718,0.000200787],"domain_scores_gemma":[0.9942868,0.002655954,0.002437475,0.000445756,0.0001116816,0.00006236963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005729346,0.0005185417,0.0008323055,0.007575392,0.009096376,0.00004258864,0.02474494,7.838706e-7,0.0002433215,0.1351267,0.02034032,0.7957494],"study_design_scores_gemma":[0.000977148,0.001010975,0.00008219176,0.005006934,0.0008526525,0.0008237782,0.003117178,0.00001090502,0.0001373756,0.002723795,0.9851412,0.0001159234],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003046945,0.9884728,0.00001496723,0.005548859,0.0006588091,0.0006417522,0.0000670669,0.000001881865,0.001546872],"genre_scores_gemma":[0.01405562,0.9844115,0.00003406621,0.0008259388,0.000294543,0.00001012447,0.00001169471,0.00001933994,0.0003372265],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9648008,"threshold_uncertainty_score":0.9998336,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997140139","doi":"10.1089/omi.2009.0011","title":"Risk Assessment and Communication Tools for Genotype Associations with Multifactorial Phenotypes: The Concept of “Edge Effect” and Cultivating an Ethical Bridge between Omics Innovations and Society","year":2009,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Pharmacogenomics; Omics; Population; Biology; Personalized medicine; Genetic association; Precision medicine; Data science; Biotechnology; Bioinformatics; Genetics; Medicine; Single-nucleotide polymorphism; Genotype; Computer science; Environmental health","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Guilherme Suarez‐Kurtz","is_ca":false},{"name":"R. Stenne","is_ca":true},{"name":"Andrew A. Somogyi","is_ca":false},{"name":"Toshiyuki Someya","is_ca":false},{"name":"S.O. Kayaalp","is_ca":false},{"name":"Eugene Kolker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02234675879850919,"gpt":0.3458051585407783,"spread":0.3234583997422691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005930264,0.0001134318,0.0002325454,0.00002409826,0.0001966537,0.00003864416,0.00009644901,0.0002052012,3.972116e-7],"category_scores_gemma":[0.0006785964,0.00007075907,0.00005157382,0.00004902239,0.0003193688,0.00001448102,0.00003022251,0.0002739073,9.10164e-9],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002480753,"about_ca_system_score_gemma":0.0001265601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001642407,"about_ca_topic_score_gemma":0.00002127957,"domain_scores_codex":[0.9991585,0.0002703837,0.0003006302,0.0001290424,0.00004838142,0.00009307959],"domain_scores_gemma":[0.9981849,0.0005185112,0.0004740951,0.0001142419,0.0006564273,0.00005186515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001144289,0.0002969367,0.306972,0.0000313796,0.0009778228,2.198224e-7,0.006226141,0.00003673278,0.6138565,0.02325082,0.0004624756,0.04674468],"study_design_scores_gemma":[0.006828605,0.008797695,0.90087,0.00006559464,0.000429084,0.00001294041,0.002324752,0.0005171299,0.06986106,0.008733494,0.001219343,0.0003403524],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9739284,0.000588688,0.02427272,0.0005137841,0.00003809803,0.000252398,0.0003923305,0.000001629421,0.0000119635],"genre_scores_gemma":[0.9831381,0.0008005574,0.01532876,0.0001786566,0.0002173584,0.000005451729,0.000323186,0.000006462037,0.000001402486],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5938979,"threshold_uncertainty_score":0.2885471,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2042200343","doi":"10.1089/omi.2007.0023","title":"Comparative Approaches to the Investigation of Responses to Stress and Viral Infection in Cattle","year":2007,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute; University of Saskatchewan","funders":"","keywords":"Haptoglobin; Biology; Stressor; Immunology; Disease; Apolipoprotein B; Internal medicine; Physiology; Virology; Medicine; Endocrinology; Cholesterol","authors":[{"name":"Palok Aich","is_ca":true},{"name":"Shakiba Jalal","is_ca":true},{"name":"Carly Czuba","is_ca":true},{"name":"Gabrielle Schatte","is_ca":true},{"name":"Katie R Herzog","is_ca":true},{"name":"Douglas J.H. Olson","is_ca":true},{"name":"Andrew R. S. Ross","is_ca":true},{"name":"Andy Potter","is_ca":true},{"name":"Lorne A. Babiuk","is_ca":true},{"name":"Philip Griebel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1365030120123219,"gpt":0.3788205532294104,"spread":0.2423175412170885,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001349426,0.00008241688,0.0003877756,0.0003356932,0.00002237614,0.000004103126,0.00006491647,0.00006019373,0.000003444664],"category_scores_gemma":[0.001207078,0.00004455586,0.00004401474,0.0001640292,0.0002297369,0.00003882154,0.00003743961,0.0002896238,0.000001220821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008482197,"about_ca_system_score_gemma":0.00007850179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002395777,"about_ca_topic_score_gemma":0.001813974,"domain_scores_codex":[0.9988835,0.0003804998,0.0004179034,0.00009527383,0.00005772345,0.0001650826],"domain_scores_gemma":[0.9992269,0.000230532,0.000170569,0.00006298882,0.0001805348,0.0001284509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005180739,0.00005689804,0.9239796,0.00001303378,0.00006822286,0.000007399753,0.004069205,0.00004820503,0.06193706,0.001789897,0.0002923739,0.002557362],"study_design_scores_gemma":[0.0006071002,0.005159376,0.9557172,0.0001503609,0.000009606896,0.0001227153,0.001856934,0.00006302982,0.03534854,0.0005472091,0.0003773173,0.00004061469],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885488,0.0001564251,0.006871067,0.004031206,0.0000708017,0.0002116359,0.00001635622,0.000001233689,0.00009247899],"genre_scores_gemma":[0.9966706,0.00009264034,0.002738968,0.0003810221,0.00007810968,0.000004377147,0.000005591529,0.000003164255,0.00002551276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03173759,"threshold_uncertainty_score":0.1816935,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997965740","doi":"10.1089/omi.2008.0047","title":"Knowledge and Attitudes of Canadian Consumers and Health Care Professionals Regarding Nutritional Genomics","year":2009,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Ottawa","funders":"","keywords":"Nutrigenomics; Focus group; Dieticians; Health care; Public relations; Public health; Medicine; Business; Marketing; Nursing; Political science","authors":[{"name":"Karine Morin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01948601996185127,"gpt":0.3278417544835344,"spread":0.3083557345216831,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001925531,0.0001159172,0.0002535841,0.0002340417,0.00008380036,0.000008360158,0.00008168213,0.0001138147,0.000003828207],"category_scores_gemma":[0.00007611491,0.00009129804,0.00006632173,0.00005735275,0.0001874721,0.000004296071,0.00002054979,0.0001008476,1.435633e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005700004,"about_ca_system_score_gemma":0.0008557565,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002561039,"about_ca_topic_score_gemma":0.003581486,"domain_scores_codex":[0.9992719,0.00009461428,0.000308032,0.0001432597,0.0000335736,0.0001485951],"domain_scores_gemma":[0.9990072,0.00002189177,0.0002245501,0.00006857736,0.0004546234,0.00022313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001827254,0.0008990473,0.2074651,0.0003716026,0.0007350532,0.00001850835,0.005306769,0.00000544696,0.708425,0.02824511,0.01948126,0.02721988],"study_design_scores_gemma":[0.01458314,0.01477857,0.4257252,0.001453157,0.0002428434,0.001039572,0.02217964,0.0000353175,0.3251086,0.009173334,0.1841995,0.00148114],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9394432,0.05837876,0.0001448498,0.00129475,0.0001195583,0.0001210842,0.0002093146,9.056214e-7,0.0002876154],"genre_scores_gemma":[0.9879026,0.008506988,0.00281026,0.0005340219,0.0001273737,0.000001454893,0.00009160421,0.000005760003,0.00001994571],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3833164,"threshold_uncertainty_score":0.3723026,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044689550","doi":"10.1089/omi.2012.0083","title":"Redundancy Control in Pathway Databases (ReCiPa): An Application for Improving Gene-Set Enrichment Analysis in Omics Studies and “Big Data” Biology","year":2013,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; National Institute on Minority Health and Health Disparities; Canadian Institutes of Health Research; National Institutes of Health; National Center for Research Resources; American Heart Association","keywords":"KEGG; Redundancy (engineering); Computational biology; Big data; Genomics; Biology; Identification (biology); Systems biology; Omics; Computer science; Bioinformatics; Data mining; Gene; Transcriptome; Genetics; Genome","authors":[{"name":"Juan C. Vivar","is_ca":false},{"name":"Priscilla Pemu","is_ca":false},{"name":"Ruth McPherson","is_ca":true},{"name":"Sujoy Ghosh","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03533688658130769,"gpt":0.3179872066385088,"spread":0.2826503200572011,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009411052,0.0002089535,0.0005750771,0.0002616762,0.0000460307,0.00001956388,0.0003525226,0.0001765346,0.000001386589],"category_scores_gemma":[0.0002405265,0.0001477911,0.00008289334,0.0001547185,0.0001742022,0.0000259665,0.0001722172,0.000191011,3.572549e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005676984,"about_ca_system_score_gemma":0.0001342472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001887045,"about_ca_topic_score_gemma":0.001709511,"domain_scores_codex":[0.9984269,0.0001543027,0.0007863183,0.0003351847,0.00003399611,0.0002633157],"domain_scores_gemma":[0.9985322,0.0001312397,0.0006044699,0.0003747863,0.0002837747,0.00007355813],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006392493,0.0001775104,0.04471789,0.00004398978,0.001321483,0.000001828993,0.0007745146,0.000347249,0.7811574,0.003429565,0.0002026479,0.1671866],"study_design_scores_gemma":[0.04463073,0.02403728,0.05237275,0.0003711278,0.003120022,0.0004266532,0.04398623,0.4944998,0.185526,0.0769122,0.06839267,0.005724563],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7183509,0.006106062,0.2740231,0.0001840122,0.0002057168,0.0004827887,0.0006353318,0.000001720999,0.00001030072],"genre_scores_gemma":[0.9844666,0.00235758,0.01121349,0.0002967274,0.000258116,0.00006130407,0.001328004,0.00001107349,0.000007065396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5956314,"threshold_uncertainty_score":0.6026745,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2312932649","doi":"10.1089/omi.2015.0185","title":"Systems Biology Approaches for Host–Fungal Interactions: An Expanding Multi-Omics Frontier","year":2016,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Prevention of Organ Failure; St. Paul's Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Systems biology; Biology; Host (biology); Computational biology; Proteomics; Genomics; Metabolomics; Omics; Modelling biological systems; Fungal pathogen; Pathogen; Bioinformatics; Genome; Ecology; Microbiology; Genetics; Gene","authors":[{"name":"Luka Culibrk","is_ca":true},{"name":"Carys A. Croft","is_ca":true},{"name":"Scott J. Tebbutt","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1725338496296784,"gpt":0.4283675643673187,"spread":0.2558337147376403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001266691,0.0006226756,0.003795707,0.0005555325,0.0001195827,0.00004019515,0.0004111431,0.0008068728,0.00002762608],"category_scores_gemma":[0.001527048,0.0003144568,0.001320072,0.0001351003,0.000414264,0.0001771116,0.00005947794,0.001074753,0.00001149065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007759766,"about_ca_system_score_gemma":0.0009604451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001372208,"about_ca_topic_score_gemma":0.00002721261,"domain_scores_codex":[0.9964266,0.0006951934,0.001794132,0.000544331,0.00008817284,0.0004515407],"domain_scores_gemma":[0.9953467,0.001065805,0.002132285,0.0004090338,0.0008086641,0.000237461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002234896,0.0008343461,0.002448658,0.005261721,0.004064799,0.00004011327,0.0006350444,3.262675e-7,0.001550493,0.01507892,0.001010392,0.9668403],"study_design_scores_gemma":[0.001726832,0.002668272,0.00003222828,0.01287846,0.001207282,0.0008766162,0.002090232,0.0001360513,0.00008084514,0.0003144708,0.9774995,0.0004891473],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000490479,0.8805717,0.1145041,0.00006029725,0.00242499,0.001152028,0.000641826,0.00001335288,0.0001412927],"genre_scores_gemma":[0.002351076,0.9877934,0.007136656,0.00004211594,0.001386508,0.0001017675,0.000250855,0.00006996009,0.0008676963],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9764892,"threshold_uncertainty_score":0.9999307,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009062850","doi":"10.1089/omi.2009.0012","title":"Biomarkers for Prediction of Bovine Respiratory Disease Outcome","year":2009,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Ministry of Agriculture - Saskatchewan; University of Saskatchewan","keywords":"Bovine respiratory disease; Haptoglobin; Biology; Metabolomics; Disease; Biomarker; Immunology; Internal medicine; Medicine; Bioinformatics; Biochemistry","authors":[{"name":"Palok Aich","is_ca":true},{"name":"Lorne A. Babiuk","is_ca":true},{"name":"Andrew Potter","is_ca":true},{"name":"Philip Griebel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03690360926244159,"gpt":0.3395638343774223,"spread":0.3026602251149807,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005767004,0.000140644,0.0003919475,0.0003451019,0.00009537096,0.000006591231,0.0001760407,0.0001648111,0.0001359016],"category_scores_gemma":[0.0007821275,0.00009286668,0.0003218029,0.0001341909,0.0002761348,0.00007484342,0.00002033128,0.0002353778,0.000007019468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007994273,"about_ca_system_score_gemma":0.0002554379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008369367,"about_ca_topic_score_gemma":0.000003619673,"domain_scores_codex":[0.9987283,0.0002278203,0.0006694892,0.0001407102,0.00002250141,0.0002111339],"domain_scores_gemma":[0.9984692,0.0002187537,0.0004441811,0.0001389499,0.0006651055,0.00006385865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003053277,0.0003087009,0.0127421,0.00001441104,0.0003293493,0.000002688786,0.00005865665,0.000002354618,0.9635211,0.00942314,0.004862596,0.00568165],"study_design_scores_gemma":[0.01562427,0.02549712,0.1033367,0.0003569993,0.0007185706,0.0002320821,0.001153477,0.00009300969,0.6283058,0.02246149,0.2015104,0.0007100856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9710062,0.008039376,0.0160548,0.0009764196,0.001216634,0.0004742377,0.001718859,0.00001636581,0.00049709],"genre_scores_gemma":[0.9989852,0.0001667857,0.0002932701,0.0002118672,0.0000832056,0.000005398534,0.00008450222,0.000007319824,0.0001624131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3352153,"threshold_uncertainty_score":0.3786993,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120211860","doi":"10.1089/omi.2014.0062","title":"Novel Multivariate Methods for Integration of Genomics and Proteomics Data: Applications in a Kidney Transplant Rejection Study","year":2014,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Renal Transplantation Outcomes and Treatments","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; Institute of Infection and Immunity; St. Paul's Hospital; University of British Columbia; Prevention of Organ Failure","funders":"Diamantina Institute, University of Queensland; Wound Management Innovation Cooperative Research Centre; University of Queensland; Australian Cancer Research Foundation; Australian Government","keywords":"Proteomics; Genomics; Computational biology; Omics; Functional genomics; Multivariate statistics; Computer science; Bioinformatics; Biology; Genome; Gene; Machine learning; Genetics","authors":[{"name":"Oliver P. Günther","is_ca":true},{"name":"Heesun Shin","is_ca":true},{"name":"Raymond T. Ng","is_ca":true},{"name":"W. Robert McMaster","is_ca":true},{"name":"Bruce M. McManus","is_ca":true},{"name":"Paul Keown","is_ca":true},{"name":"Scott J. Tebbutt","is_ca":true},{"name":"Kim‐Anh Lê Cao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06776308066740713,"gpt":0.4185120223611422,"spread":0.3507489416937351,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009044824,0.0001348667,0.0005009985,0.0002312989,0.00003187514,0.000007316962,0.0001061251,0.00008583949,0.000001180459],"category_scores_gemma":[0.0003077517,0.00008148068,0.00006899874,0.0001057801,0.0000596677,0.00008102381,0.0000117351,0.0001796899,9.328499e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000704483,"about_ca_system_score_gemma":0.0001251039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001153045,"about_ca_topic_score_gemma":0.00008363289,"domain_scores_codex":[0.9989207,0.0001517503,0.0006164809,0.0001780531,0.00004131983,0.00009167893],"domain_scores_gemma":[0.9986536,0.0004162735,0.0004457686,0.0001526507,0.0002610287,0.00007070525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002901888,0.001298143,0.04689579,0.0001303118,0.0005985551,0.000001267646,0.004456166,0.00001706814,0.9164186,0.007548037,0.000002320069,0.01973193],"study_design_scores_gemma":[0.08608443,0.03350784,0.3049117,0.003221718,0.004247703,0.001422489,0.01552913,0.08928636,0.4424842,0.01342333,0.004790592,0.001090424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2115981,0.0000552692,0.7869691,0.0001407411,0.00007557358,0.0009532377,0.0001822152,0.000002236804,0.00002354942],"genre_scores_gemma":[0.6111726,0.0002175327,0.388252,0.00005233164,0.00004621506,0.00004102607,0.0001977011,0.00000962001,0.00001095299],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.4739343,"threshold_uncertainty_score":0.3322686,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116759887","doi":"10.1089/omi.2013.0034","title":"Crowd-Funded Micro-Grants for Genomics and “Big Data”: An Actionable Idea Connecting Small (Artisan) Science, Infrastructure Science, and Citizen Philanthropy","year":2013,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Children's Hospital; University of Toronto; McGill University","funders":"National Institute on Minority Health and Health Disparities","keywords":"Big data; Citizen science; Data science; Commons; Crowdsourcing; Public relations; Political science; Engineering ethics; World Wide Web; Computer science; Engineering; Biology","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Kamal F. Badr","is_ca":false},{"name":"Edward S. Dove","is_ca":true},{"name":"László Endrényi","is_ca":true},{"name":"Christy J. Geraci","is_ca":false},{"name":"Peter J. Hotez","is_ca":false},{"name":"Djims Milius","is_ca":true},{"name":"Maria Neves-Pereira","is_ca":false},{"name":"Tikki Pang","is_ca":false},{"name":"Charles N. Rotimi","is_ca":false},{"name":"Ramzi Sabra","is_ca":false},{"name":"Christineh N. Sarkissian","is_ca":true},{"name":"Sanjeeva Srivastava","is_ca":false},{"name":"Nathalie K. Zgheib","is_ca":false},{"name":"Ilona Kickbusch","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.035480818521776,"gpt":0.318096018959975,"spread":0.282615200438199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001665317,0.0001916842,0.0002978052,0.0003027679,0.00044147,0.0002318175,0.000802918,0.000182107,0.000009452102],"category_scores_gemma":[0.002156751,0.0001293924,0.00003978944,0.0002064149,0.003080051,0.00005847075,0.0004899979,0.0002432814,8.422568e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006858877,"about_ca_system_score_gemma":0.0009928334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005096704,"about_ca_topic_score_gemma":0.00008773563,"domain_scores_codex":[0.9984354,0.00004922201,0.0004668982,0.0003962255,0.0001851262,0.0004671298],"domain_scores_gemma":[0.9972961,0.0000862253,0.0003399695,0.0002938024,0.001646598,0.0003373204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001196041,0.00002630539,0.001188726,0.00001652137,0.00004458649,5.587148e-7,0.0002351845,0.000001504327,0.9385068,0.0003267005,0.0004030371,0.05913044],"study_design_scores_gemma":[0.003014677,0.004633451,0.00967493,0.00006341698,0.00005719765,0.0006725353,0.00910335,0.005291464,0.9087378,0.009820704,0.04834605,0.0005844461],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882488,0.0003846192,0.009837463,0.0003659127,0.0004609594,0.000298101,0.0001743723,0.000002870177,0.0002269239],"genre_scores_gemma":[0.9647337,0.001548107,0.03275714,0.000351245,0.0004604029,0.000005411095,0.0000921859,0.00001389329,0.00003794599],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.058546,"threshold_uncertainty_score":0.999633,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964318336","doi":"10.1089/omi.2010.0022","title":"Standardization and Omics Science: Technical and Social Dimensions Are Inseparable and Demand Symmetrical Study","year":2010,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Research Data Management Practices","field":"Computer Science","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; University of Calgary; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Standardization; Interoperability; Engineering ethics; Flexibility (engineering); Quality (philosophy); Legitimacy; Realm; Process (computing); Data science; Knowledge management; Political science; Computer science; Engineering; Management; World Wide Web; Politics; Law","authors":[{"name":"Christina Holmes","is_ca":true},{"name":"Fiona McDonald","is_ca":false},{"name":"Mavis Jones","is_ca":true},{"name":"Vural Özdemir","is_ca":true},{"name":"Janice Graham","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09647005523570067,"gpt":0.4447805798310955,"spread":0.3483105245953949,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.004527258,0.0002860877,0.001232994,0.001146377,0.0004339148,0.001298345,0.001186531,0.0002562625,8.231934e-7],"category_scores_gemma":[0.003106189,0.0001717631,0.00008051594,0.0009163384,0.001073458,0.003259811,0.001645816,0.001354196,4.055371e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001474811,"about_ca_system_score_gemma":0.0006169765,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000682536,"about_ca_topic_score_gemma":0.00002377191,"domain_scores_codex":[0.997457,0.0006604777,0.000694802,0.0005550488,0.0003424157,0.0002901999],"domain_scores_gemma":[0.9966569,0.001073607,0.001226676,0.0002881251,0.0005893523,0.0001653326],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007073385,0.0003882323,0.000877997,0.0004817833,0.0003716504,0.00009635579,0.0007029279,3.693865e-7,0.0001710684,0.214472,0.000244062,0.7821228],"study_design_scores_gemma":[0.000943275,0.002268653,0.0005528271,0.0007570128,0.0003813647,0.0009222862,0.0008635666,0.0002460318,0.00001208021,0.002416993,0.9901658,0.000470077],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002356412,0.8863149,0.1094942,0.000456247,0.0003280568,0.0008232076,0.00007099012,0.00001302599,0.0001429513],"genre_scores_gemma":[0.003176225,0.9880227,0.00865738,0.00002618292,0.00007479527,0.000009446408,0.000005348204,0.00001028261,0.00001764882],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9899217,"threshold_uncertainty_score":0.9997384,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2003976654","doi":"10.1089/omi.2006.10.344","title":"Microarray Analysis of Alternative Splicing","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Atlantic Cancer Research Institute","funders":"","keywords":"Alternative splicing; RNA splicing; DNA microarray; Computational biology; Biology; Exon; Proteomics; Microarray analysis techniques; Genetics; Precursor mRNA; splice; Gene; RNA; Gene expression","authors":[{"name":"Miroslava Čuperlović‐Culf","is_ca":true},{"name":"Nabil Belacel","is_ca":false},{"name":"Adrian S. Culf","is_ca":true},{"name":"Rodney J. Ouellette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0277475818421423,"gpt":0.3657918816092714,"spread":0.3380442997671291,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006848525,0.0003980895,0.002488914,0.000985681,0.00003936561,0.00001732777,0.0006689089,0.0004415182,0.00001721081],"category_scores_gemma":[0.0003842605,0.0002434181,0.001776164,0.0005812477,0.0002565349,0.000004135262,0.0001300718,0.0005458057,0.000001793074],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001002708,"about_ca_system_score_gemma":0.0004941222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001332812,"about_ca_topic_score_gemma":0.000123744,"domain_scores_codex":[0.9975083,0.0004771006,0.001254296,0.0003270658,0.000130934,0.0003023009],"domain_scores_gemma":[0.9966574,0.0001722927,0.002054376,0.000307899,0.0007077266,0.0001003172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003535617,0.0003214593,0.0005695696,0.001304428,0.03603281,0.00005902177,0.0001524917,0.0001203878,0.2276393,0.002078043,0.001971974,0.7293969],"study_design_scores_gemma":[0.0004290864,0.001485305,0.00001761146,0.001668448,0.003951234,0.0001264724,0.0001186303,0.00006066116,0.01221027,0.00008692734,0.9794242,0.0004211316],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009146873,0.9830039,0.006748417,0.00001112527,0.0001908203,0.0001819384,0.000265874,0.000001235114,0.0004498227],"genre_scores_gemma":[0.001052152,0.9963857,0.001145283,0.00002198609,0.000335424,0.000006040737,0.0003977687,0.00003023674,0.000625409],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9774522,"threshold_uncertainty_score":0.9926303,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768318977","doi":"10.1089/omi.2017.0141","title":"Genomic Medicine Without Borders: Which Strategies Should Developing Countries Employ to Invest in Precision Medicine? A New “Fast-Second Winner” Strategy","year":2017,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Pharmaceutical Economics and Policy","field":"Economics, Econometrics and Finance","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Genome British Columbia","funders":"National Heart, Lung, and Blood Institute; United Arab Emirates University","keywords":"Precision medicine; Genomic medicine; Personalized medicine; Computer science; Business; Biology; Computational biology; Genetics","authors":[{"name":"Konstantinos Mitropoulos","is_ca":false},{"name":"D.N. Cooper","is_ca":false},{"name":"Christina Mitropoulou","is_ca":false},{"name":"Spiros N. Agathos","is_ca":false},{"name":"Juergen Reichardt","is_ca":false},{"name":"Fatma Al‐Maskari","is_ca":false},{"name":"Wasun Chantratita","is_ca":false},{"name":"Ambroise Wonkam","is_ca":false},{"name":"Collet Dandara","is_ca":false},{"name":"Θεοδώρα Κάτσιλα","is_ca":false},{"name":"Catalina López-Correa","is_ca":true},{"name":"Bassam R. Ali","is_ca":false},{"name":"George P. Patrinos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1397923509181222,"gpt":0.4010220524421782,"spread":0.261229701524056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001612419,0.0003953224,0.001447011,0.0007957232,0.0001919158,0.0001909682,0.001068034,0.0002772894,0.0005969829],"category_scores_gemma":[0.001380309,0.0003018278,0.0001032112,0.0001877261,0.0004999905,0.0005773443,0.0001622033,0.0006875662,0.0000698677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004154925,"about_ca_system_score_gemma":0.0007878601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001851727,"about_ca_topic_score_gemma":0.008616509,"domain_scores_codex":[0.9970868,0.00007149968,0.001843948,0.000449437,0.00004960411,0.0004987087],"domain_scores_gemma":[0.9969482,0.0002819848,0.001734736,0.0004051093,0.0002850873,0.0003448469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0005230662,0.00004362751,0.07830337,0.00003469217,0.0002571712,0.00001396752,0.005475672,0.0001613758,0.002021307,0.9034828,0.006390131,0.003292848],"study_design_scores_gemma":[0.005144597,0.002378386,0.0841442,0.0006105294,0.00003238618,0.00009821578,0.003097063,0.001057543,0.0006730584,0.4724917,0.4294351,0.0008372336],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8942627,0.004422024,0.01090919,0.05717103,0.001597934,0.0004218661,0.0001496916,0.0000118214,0.03105368],"genre_scores_gemma":[0.9879552,0.004361088,0.001766708,0.004590739,0.000942426,0.000008000406,0.00001133681,0.00003883243,0.0003256314],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4309911,"threshold_uncertainty_score":0.9999434,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989038811","doi":"10.1089/omi.2006.10.311","title":"Microarrays as Validation Strategies in Clinical Samples: Tissue and Protein Microarrays","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital","funders":"","keywords":"DNA microarray; Protein microarray; Tissue microarray; Microarray; Context (archaeology); Biology; Computational biology; Protein Array Analysis; Antibody microarray; Proteomics; Gene expression; Gene; Immunohistochemistry; Genetics; Antibody; Immunology","authors":[{"name":"Adriana Aguilar‐Mahecha","is_ca":true},{"name":"Saima Hassan","is_ca":true},{"name":"Cristiano Ferrario","is_ca":true},{"name":"Mark Basik","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04000194923369071,"gpt":0.4107273151519396,"spread":0.3707253659182488,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005731715,0.0003810643,0.001190025,0.0001813445,0.00004724902,0.00004215631,0.0002984052,0.0007465222,0.000003598338],"category_scores_gemma":[0.0002411216,0.0002608655,0.0003013687,0.0001326921,0.000356186,0.00000825413,0.00009628731,0.000609583,0.000002289079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005831933,"about_ca_system_score_gemma":0.0005192233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003641421,"about_ca_topic_score_gemma":0.00005398746,"domain_scores_codex":[0.9976402,0.0003792562,0.001313966,0.0004039296,0.00004971134,0.0002129691],"domain_scores_gemma":[0.9980433,0.00008745832,0.001302361,0.0002508156,0.0002500894,0.00006596163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001133333,0.0002411228,0.00004641684,0.0005630783,0.0002434931,0.000018307,0.00004461993,0.000001547159,0.163451,0.009758495,0.001201835,0.8243168],"study_design_scores_gemma":[0.0002406705,0.0008827446,0.000004482602,0.001226657,0.00008368968,0.0002982711,0.0001157723,4.710001e-7,0.0144018,0.003608324,0.9788596,0.0002774886],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006342967,0.9662126,0.02598353,0.00007354523,0.0001279286,0.0007658171,0.0001328234,0.000007493881,0.000353321],"genre_scores_gemma":[0.001125923,0.9645705,0.03325814,0.00003810297,0.0003702599,0.00002900066,0.0004227952,0.00003599631,0.0001493141],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9776578,"threshold_uncertainty_score":0.9999844,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095260914","doi":"10.1089/omi.2011.0087","title":"Steering Vaccinomics Innovations with Anticipatory Governance and Participatory Foresight","year":2011,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Biomedical and Engineering Education","field":"Engineering","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"U.S. Food and Drug Administration; National Comprehensive Cancer Network","keywords":"Futures studies; Responsible Research and Innovation; Corporate governance; Upstream (networking); Citizen journalism; Deliberation; Knowledge management; Process management; Business; Management science; Political science; Economics; Public relations; Computer science; Management; Politics","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Samer Faraj","is_ca":true},{"name":"Bartha Maria Knoppers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05629887697554159,"gpt":0.2994459361760491,"spread":0.2431470592005076,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002073554,0.0002985166,0.000931923,0.0001860752,0.00002601387,0.00001455711,0.0001894518,0.0002602574,0.0000154127],"category_scores_gemma":[0.0000627233,0.0001775378,0.000100285,0.0002132651,0.0001026788,0.00008577441,0.00002346287,0.0006274789,0.000002940615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001623549,"about_ca_system_score_gemma":0.0001815236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003828233,"about_ca_topic_score_gemma":0.000007341073,"domain_scores_codex":[0.9989794,0.00003929983,0.0006109637,0.0001232537,0.00004584214,0.0002012726],"domain_scores_gemma":[0.9991876,0.0001187983,0.0003448756,0.0001208517,0.0001293067,0.0000985786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002327801,0.00006542753,0.0001557814,0.006420903,0.001178158,0.00001529445,0.000894496,0.0000309413,0.00006228151,0.02921488,0.0008891083,0.9610494],"study_design_scores_gemma":[0.0001684289,0.0002255909,0.0001484233,0.004052861,0.0002725471,0.0001791579,0.00004790808,0.0002176668,0.00003825528,0.0001752768,0.9941728,0.0003010849],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001430524,0.9890239,0.008385019,0.000009705693,0.0007804076,0.0001111341,0.00003576595,0.00002149923,0.0002020889],"genre_scores_gemma":[0.003024481,0.9947663,0.001892011,0.00001034473,0.0002115082,0.00001745042,0.00001286897,0.00004356431,0.00002146824],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9932837,"threshold_uncertainty_score":0.7239781,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050451112","doi":"10.1089/omi.2011.0152","title":"Opportunities and Challenges for the Life Sciences Community","year":2012,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Research Data Management Practices","field":"Computer Science","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Science Foundation","keywords":"Big data; Alliance; Resource (disambiguation); Data science; Political science; Engineering ethics; Computer science; Engineering","authors":[{"name":"Eugene Kolker","is_ca":false},{"name":"Elizabeth Stewart","is_ca":false},{"name":"Vural Özdemir","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.5156816781593903,"gpt":0.4344378881334908,"spread":0.08124379002589949,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006549598,0.00007739819,0.000149862,0.000128033,0.0003663623,0.0002274956,0.001672322,0.0000293432,0.000001927684],"category_scores_gemma":[0.002622463,0.00003626863,0.00004049423,0.00007432503,0.0005520625,0.005400863,0.0004652575,0.0002893768,4.482771e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001491755,"about_ca_system_score_gemma":0.0001134964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002504445,"about_ca_topic_score_gemma":0.00002018977,"domain_scores_codex":[0.9987577,0.0006821036,0.0001973411,0.00006809507,0.00009473075,0.000200077],"domain_scores_gemma":[0.9951994,0.003953314,0.0003265117,0.0002153285,0.0002173729,0.00008811652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001889598,0.00004035096,0.0003164145,0.000008031621,0.0000842376,3.724335e-7,0.001596266,6.552277e-7,0.0001373598,0.967747,0.0003641049,0.02968632],"study_design_scores_gemma":[0.0006316014,0.002945561,0.006845923,0.00005239727,0.00005131002,0.0001525849,0.06357057,0.002297737,0.0008998136,0.02620403,0.8961243,0.0002241626],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.03697257,0.09760696,0.7246851,0.1336385,0.00111055,0.0003800789,0.00002572428,0.00001479965,0.005565725],"genre_scores_gemma":[0.8038149,0.1713371,0.02368508,0.0008592617,0.000198641,0.00001157068,0.000001129599,0.000003934402,0.00008842441],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.941543,"threshold_uncertainty_score":0.3915496,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168413498","doi":"10.1089/omi.2011.0007","title":"Policy and Data-Intensive Scientific Discovery in the Beginning of the 21st Century","year":2011,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Research Data Management Practices","field":"Computer Science","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Division of Biological Infrastructure","keywords":"Scientific discovery; Data science; Computer science; Psychology; Cognitive science","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Charles V. Smith","is_ca":false},{"name":"Kathleen D. Bongiovanni","is_ca":false},{"name":"David C. Cullen","is_ca":false},{"name":"Bartha Maria Knoppers","is_ca":true},{"name":"Andrew Lowe","is_ca":false},{"name":"Mette A. Peters","is_ca":false},{"name":"Robert Robbins","is_ca":false},{"name":"Elizabeth Stewart","is_ca":false},{"name":"Gene Yee","is_ca":false},{"name":"Yi‐Kuo Yu","is_ca":false},{"name":"Eugene Kolker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1327547448791684,"gpt":0.3811643709331279,"spread":0.2484096260539594,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00279605,0.00008875052,0.0001785833,0.0002985258,0.00009319941,0.0004553196,0.004518842,0.00003043502,0.000001229253],"category_scores_gemma":[0.00408689,0.00003714472,0.00004237451,0.0005464293,0.0006976593,0.006066522,0.001688869,0.0003885805,5.363873e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003433176,"about_ca_system_score_gemma":0.000265832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002281176,"about_ca_topic_score_gemma":0.0001200916,"domain_scores_codex":[0.9984959,0.0006060239,0.0003207563,0.0002223081,0.0001747305,0.0001802604],"domain_scores_gemma":[0.9976103,0.0005691545,0.0005735842,0.0008433151,0.0003755783,0.00002801678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"qualitative","study_design_scores_codex":[0.00004063197,0.00005223513,0.004795566,0.000004658665,0.00005481256,0.00001113778,0.005089893,6.866024e-7,0.002994137,0.9819622,0.0002495118,0.004744506],"study_design_scores_gemma":[0.004605711,0.004329159,0.2424392,0.001198639,0.0001977732,0.001918019,0.2722052,0.007276274,0.02577163,0.2056862,0.2331647,0.001207509],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8443495,0.003122904,0.1096009,0.02701747,0.002373875,0.0007651873,0.0002225486,0.000008089031,0.01253952],"genre_scores_gemma":[0.9937903,0.001856557,0.003765246,0.0004592894,0.00005346425,0.000001245905,0.000004507423,0.000002923856,0.00006645974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7762761,"threshold_uncertainty_score":0.8397207,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034075323","doi":"10.1089/omi.2006.10.209","title":"Data Standards for Flow Cytometry","year":2006,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Terry Fox Research Institute","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Michael Smith Health Research BC","keywords":"Computer science; Software; Data science; Scope (computer science); Software engineering; Dissemination; Data mining; Systems engineering; Engineering","authors":[{"name":"Josef Špidlen","is_ca":true},{"name":"Robert Gentleman","is_ca":false},{"name":"Perry Haaland","is_ca":false},{"name":"Morgan G. I. Langille","is_ca":true},{"name":"Nolwenn Le Meur","is_ca":false},{"name":"Michael F. Ochs","is_ca":false},{"name":"Charles Schmitt","is_ca":false},{"name":"Clayton A. Smith","is_ca":true},{"name":"Adam Treister","is_ca":false},{"name":"Ryan R. Brinkman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07404781375509646,"gpt":0.3920363041558689,"spread":0.3179884904007724,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001065053,0.0005094364,0.00179211,0.0002509123,0.00007122102,0.00004184009,0.001320077,0.0008028757,0.00001133361],"category_scores_gemma":[0.0007517412,0.0003227099,0.0008274158,0.00014776,0.0002073594,0.000007061527,0.0001741647,0.0005134263,0.000001428506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001286563,"about_ca_system_score_gemma":0.001632408,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007846259,"about_ca_topic_score_gemma":0.00005693722,"domain_scores_codex":[0.997693,0.0002389815,0.001133224,0.0004820453,0.0001325559,0.0003201849],"domain_scores_gemma":[0.9971653,0.0001680904,0.001119208,0.0006065411,0.0008424657,0.00009844364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003685956,0.0001847444,0.00001932633,0.001499399,0.001366139,0.00001017289,0.0000159637,0.000003060856,0.003587551,0.0003561103,0.03198694,0.960602],"study_design_scores_gemma":[0.0005696696,0.001181473,3.546698e-7,0.0009835759,0.0004852326,0.0001701126,0.00001633424,0.00003179228,0.0005023609,0.0001262198,0.9956072,0.0003256536],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003100226,0.879734,0.1063616,0.00001907484,0.001159604,0.0003316368,0.01211431,0.000003272011,0.0002454425],"genre_scores_gemma":[0.00003769176,0.980386,0.01208865,0.00006297319,0.00166454,0.00001211314,0.00542828,0.0000691905,0.0002505445],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9636202,"threshold_uncertainty_score":0.9999225,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108218086","doi":"10.1089/omi.2010.0092","title":"COX-2-Dependent and COX-2-Independent Mode of Action of Celecoxib in Human Liver Cancer Cells","year":2011,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Inflammatory mediators and NSAID effects","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Celecoxib; Microarray analysis techniques; Cancer research; Cell culture; Microarray; Biological pathway; Cancer; Gene; Biology; Programmed cell death; Cell growth; Gene expression; Pharmacology; Apoptosis; Biochemistry; Genetics","authors":[{"name":"Melchiorre Cervello","is_ca":false},{"name":"Dimcho Bachvarov","is_ca":true},{"name":"Antonella Cusimano","is_ca":false},{"name":"Francesca Sardina","is_ca":false},{"name":"Antonina Azzolina","is_ca":false},{"name":"Nadia Lampiasi","is_ca":false},{"name":"Lydia Giannitrapani","is_ca":false},{"name":"James A. McCubrey","is_ca":false},{"name":"Giuseppe Montalto","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02993461495095806,"gpt":0.3162048331020386,"spread":0.2862702181510805,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004037275,0.0001481426,0.0006341631,0.0002916072,0.00001731018,0.000001812046,0.00008980941,0.0001785961,0.0001219745],"category_scores_gemma":[0.00005980813,0.0000978685,0.0001050027,0.00006779505,0.0001848742,0.00005931918,0.00002816965,0.0003908467,8.148304e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001368375,"about_ca_system_score_gemma":0.0001762366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008811248,"about_ca_topic_score_gemma":0.0008527971,"domain_scores_codex":[0.9988467,0.0001461944,0.0006158829,0.0001240882,0.00011437,0.0001527542],"domain_scores_gemma":[0.9986294,0.00008613883,0.0007221354,0.00009524947,0.0003776181,0.0000894645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001154962,0.0002471695,0.05327282,0.00009165146,0.0001589817,0.00005370738,0.003936958,0.000005126069,0.9377555,0.001150266,0.00005410102,0.002118746],"study_design_scores_gemma":[0.00215342,0.001937332,0.01997203,0.0002403069,0.00008491165,0.0000789426,0.0008830564,0.0001697165,0.9739201,0.0004101897,0.00006248414,0.00008748512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980404,0.0006742495,0.000336162,0.00001849566,0.0003675645,0.0001894569,0.00002030793,0.000001868389,0.0003514365],"genre_scores_gemma":[0.9979325,0.001495089,0.0003681444,0.00003720657,0.00008908566,0.000004617304,0.000002363692,0.0000109736,0.00006001847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03616462,"threshold_uncertainty_score":0.3990962,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3096334111","doi":"10.1089/omi.2019.0220","title":"Digging Deeper into Precision/Personalized Medicine: Cracking the Sugar Code, the Third Alphabet of Life, and Sociomateriality of the Cell","year":2020,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Institute on Governance","funders":"","keywords":"Alphabet; Digging; Code (set theory); Precision medicine; Cracking; Internet privacy; Data science; Computer science; Computer security; Psychology; Biology; History; Genetics; Chemistry; Linguistics","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Kazım Yalçın Arğa","is_ca":false},{"name":"Ramy K. Aziz","is_ca":false},{"name":"Mustafa Bayram","is_ca":false},{"name":"Shannon N. Conley","is_ca":false},{"name":"Collet Dandara","is_ca":false},{"name":"László Endrényi","is_ca":true},{"name":"Erik Fisher","is_ca":false},{"name":"Colin Garvey","is_ca":false},{"name":"Nezih Hekim","is_ca":false},{"name":"Tanja Kunej","is_ca":false},{"name":"Semra Şardaş","is_ca":false},{"name":"René von Schomberg","is_ca":false},{"name":"Aymen S. Yassin","is_ca":false},{"name":"Gürçim Yılmaz","is_ca":false},{"name":"Wei Wang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02224211919323357,"gpt":0.3200868190612243,"spread":0.2978446998679908,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001008476,0.0003199643,0.001189868,0.00005002361,0.0001530088,0.00001684873,0.0007662273,0.0003014836,0.00002065925],"category_scores_gemma":[0.001452998,0.0001229598,0.0005659706,0.0001146357,0.001372206,0.000004002507,0.0002586799,0.0003750623,3.538395e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002819744,"about_ca_system_score_gemma":0.0005810473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002000981,"about_ca_topic_score_gemma":0.00001708687,"domain_scores_codex":[0.9970943,0.001303145,0.001045021,0.0002518288,0.0001511312,0.0001545723],"domain_scores_gemma":[0.9968308,0.0004457087,0.001785689,0.0003416963,0.0005050089,0.00009105829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005330288,0.001110755,0.006347378,0.01735844,0.0096491,0.00001995034,0.0189496,0.000009741844,0.4956705,0.01380071,0.04614097,0.3856125],"study_design_scores_gemma":[0.001158732,0.0007859062,0.0001070044,0.002109172,0.0009873492,0.00006466589,0.00174203,0.000004894389,0.009672867,0.00498076,0.9781207,0.0002658775],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01970339,0.9776052,0.0005957204,0.0008350888,0.0005684139,0.0003787692,0.0002134829,0.000001356939,0.0000986353],"genre_scores_gemma":[0.03328579,0.9654812,0.0002457169,0.0003204515,0.0005590157,0.00001027076,0.0000458558,0.00002289653,0.0000287902],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9319798,"threshold_uncertainty_score":0.5055948,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2786762101","doi":"10.1089/omi.2018.0002","title":"What does “Diversity” Mean for Public Engagement in Science? A New Metric for Innovation Ecosystem Diversity","year":2018,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Innovation, Sustainability, Human-Machine Systems","field":"Social Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Diversity (politics); Metric (unit); Ecosystem; Biodiversity; Environmental resource management; Ecology; Geography; Environmental ethics; Sociology; Biology; Environmental science; Business; Anthropology","authors":[{"name":"Vural Özdemir","is_ca":false},{"name":"Simon Springer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1414765133835671,"gpt":0.4198994249551169,"spread":0.2784229115715497,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.02286381,0.0003925454,0.001731274,0.004868065,0.002207969,0.0004007635,0.001859035,0.0004419696,0.00002500861],"category_scores_gemma":[0.01300733,0.0002480046,0.0005061986,0.005069236,0.0007736118,0.001390156,0.0007925773,0.0005714393,0.000001942357],"about_ca_system_candidate":true,"about_ca_system_consensus":true,"about_ca_system_score_codex":0.005686268,"about_ca_system_score_gemma":0.006428972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007965724,"about_ca_topic_score_gemma":0.01026309,"domain_scores_codex":[0.9952097,0.001416318,0.001722913,0.0005423612,0.0004789527,0.0006297664],"domain_scores_gemma":[0.9861513,0.001561654,0.003510467,0.0002555265,0.008389687,0.0001314082],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008536534,0.0001743651,0.001846864,0.002297942,0.0004675231,0.000002185159,0.05732192,6.565068e-7,0.000002805077,0.747341,0.001433306,0.1890261],"study_design_scores_gemma":[0.0006946328,0.0006110331,0.00001581352,0.001688331,0.00017466,0.000005096917,0.04682745,0.00001558884,0.000004769018,0.02479522,0.9248379,0.0003294479],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01436547,0.8829786,0.05276058,0.003169556,0.02823035,0.01666411,0.0005183048,0.00006876742,0.001244301],"genre_scores_gemma":[0.05062781,0.941021,0.003346839,0.0001482929,0.003581367,0.0001198853,0.0001549275,0.00004967704,0.0009502301],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9234046,"threshold_uncertainty_score":0.9999972,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388539797","doi":"10.1089/omi.2023.0169","title":"From Microcosm to Macrocosm: The -Omics, Multiomics, and Sportomics Approaches in Exercise and Sports","year":2023,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Arthritis Research Centre of Canada; University of Toronto","funders":"","keywords":"Psychological intervention; Athletes; Computer science; Data science; Big data; Omics; Bioinformatics; Psychology; Medicine; Biology","authors":[{"name":"Renan Muniz‐Santos","is_ca":false},{"name":"Alexandre Magno-França","is_ca":false},{"name":"Igor Jurišica","is_ca":true},{"name":"Luiz Cláudio Cameron","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04985892701641485,"gpt":0.3243376509754828,"spread":0.274478723959068,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008577246,0.0005802544,0.002102122,0.0004189649,0.00008065198,0.00005168044,0.0004708621,0.0005120886,0.000002711254],"category_scores_gemma":[0.0003161796,0.0003421117,0.0003365742,0.0002515652,0.0003170354,0.000006028977,0.000499991,0.0006407914,0.00000224926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006931825,"about_ca_system_score_gemma":0.0002355027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008904302,"about_ca_topic_score_gemma":0.0002089979,"domain_scores_codex":[0.9976331,0.0001724714,0.001156808,0.0005945393,0.00008534572,0.0003577474],"domain_scores_gemma":[0.9982227,0.0001764345,0.0009930936,0.000321415,0.0001435475,0.000142799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004718603,0.0001482641,0.0009420105,0.0007391797,0.001630937,0.00006775068,0.001363065,0.000003194678,0.004483848,0.001494987,0.001425367,0.9872295],"study_design_scores_gemma":[0.0009027715,0.0004366426,0.0002480586,0.002547047,0.0007061022,0.00024809,0.002246639,0.00001357467,0.00133154,0.002704512,0.9878362,0.0007787748],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0462515,0.951744,0.0001958682,0.0001726339,0.0004518192,0.0007256158,0.0004222275,0.000003605977,0.00003271807],"genre_scores_gemma":[0.001176629,0.9948391,0.003023667,0.00009316332,0.0004497508,0.00004495466,0.0001793048,0.0000646533,0.0001287412],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9864507,"threshold_uncertainty_score":0.9999031,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1594022421","doi":"10.1089/omi.2007.0043","title":"Characterizing Regulation of Metabolism in <i>Geobacter sulfurreducens</i> through Genome-Wide Expression Data and Sequence Analysis","year":2008,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Geobacter sulfurreducens; Biology; Operon; Computational biology; DNA binding site; Microarray analysis techniques; Geobacter; Gene; Genetics; Gene expression; Promoter; Bacteria; Escherichia coli","authors":[{"name":"Radhakrishnan Mahadevan","is_ca":true},{"name":"Bin Yan","is_ca":false},{"name":"Brad Postier","is_ca":false},{"name":"Kelly P. Nevin","is_ca":false},{"name":"Trevor L. Woodard","is_ca":false},{"name":"Regina A. O'Neil","is_ca":false},{"name":"Maddalena V. Coppi","is_ca":false},{"name":"Barbara A. Methé","is_ca":false},{"name":"Julia Krushkal","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03176442872337348,"gpt":0.2648643341481066,"spread":0.2330999054247331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003777676,0.0001063076,0.0003430896,0.0001032666,0.000036962,0.000006517766,0.0002427642,0.00008048277,0.0001313014],"category_scores_gemma":[0.0001138005,0.00006884788,0.00005698791,0.0002944888,0.0002346058,0.0003778348,0.0001473564,0.0001325195,0.000001569987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006075915,"about_ca_system_score_gemma":0.0000249598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001640634,"about_ca_topic_score_gemma":0.0001621114,"domain_scores_codex":[0.9990035,0.0001362201,0.0004716978,0.0001886307,0.00008279298,0.0001171702],"domain_scores_gemma":[0.9991038,0.00007680996,0.0005767455,0.000163353,0.00004447824,0.00003479058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004613127,0.00002709105,0.1503389,0.000001821181,0.00002568501,0.000002233712,0.001185888,0.00002635732,0.8479798,0.00001890502,0.00003625538,0.0003109759],"study_design_scores_gemma":[0.0003909925,0.00008337607,0.6951762,0.00002570586,0.00008247224,0.00003940929,0.0002483104,0.0004593531,0.2972224,0.0003148735,0.005821728,0.0001352294],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970186,0.0002214347,0.002246934,0.0001906496,0.00008601243,0.00006252996,0.00007051948,0.000001239775,0.0001021004],"genre_scores_gemma":[0.9926924,0.001932012,0.005099552,0.0001055722,0.00004287041,4.528358e-7,0.0001090823,0.000003830537,0.00001430208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5507574,"threshold_uncertainty_score":0.2807535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2523064628","doi":"10.1089/omi.2016.0119","title":"<i>SLCO1B1</i> Gene Variations Among Tanzanians, Ethiopians, and Europeans: Relevance for African and Worldwide Precision Medicine","year":2016,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"European and Developing Countries Clinical Trials Partnership; Addis Ababa University; Karolinska Institutet; Centre in Green Chemistry and Catalysis","keywords":"SLCO1B1; Haplotype; Pharmacogenetics; Genotype; Medicine; Allele; Organic anion transporter 1; Gene; Genetics; Pharmacology; Bioinformatics; Biology; Transporter","authors":[{"name":"Eleni Aklillu","is_ca":false},{"name":"Abiy Habtewold","is_ca":false},{"name":"Eliford Ngaimisi","is_ca":false},{"name":"Getnet Yimer","is_ca":false},{"name":"Sabina Mugusi","is_ca":false},{"name":"Wondwossen Amogne","is_ca":false},{"name":"Tasmin Reuter","is_ca":false},{"name":"Andreas D. Meid","is_ca":false},{"name":"Michael M. Hoffmann","is_ca":false},{"name":"Johanna Weiß","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02612651527644877,"gpt":0.3311056662648546,"spread":0.3049791509884058,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.001549137,0.0001785312,0.0006706396,0.0002468138,0.00008082865,0.000006887377,0.0001221008,0.0001399722,0.00002673617],"category_scores_gemma":[0.01105076,0.00008251362,0.00008271369,0.0001240131,0.0006842169,0.00009797409,0.00004793148,0.0003330417,0.000001702072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008347614,"about_ca_system_score_gemma":0.0001058384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003978319,"about_ca_topic_score_gemma":0.0000943264,"domain_scores_codex":[0.9983364,0.0003905836,0.0006427366,0.0002528797,0.00009163674,0.0002857554],"domain_scores_gemma":[0.9954305,0.003154499,0.0003978571,0.000148366,0.0006002882,0.0002684713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004041773,0.000127431,0.08512104,0.00005220496,0.0006549401,0.0000529637,0.001541656,8.257351e-7,0.714433,0.04243514,0.01333858,0.1382005],"study_design_scores_gemma":[0.02186199,0.02490384,0.3298866,0.003091614,0.000681347,0.002668785,0.001917312,0.0007345429,0.0219524,0.05527073,0.5362366,0.0007941541],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6614716,0.01130233,0.205147,0.1185623,0.0005349649,0.0008692304,0.0001758012,0.00002052809,0.001916333],"genre_scores_gemma":[0.9543591,0.02477332,0.01775103,0.001811415,0.0005472189,0.00001689744,0.00001227784,0.00002606356,0.0007026777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6924805,"threshold_uncertainty_score":0.9972796,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119387590","doi":"10.1089/omi.2008.0049","title":"Nutrigenomics and Ethics Interface: Direct-to-Consumer Services and Commercial Aspects","year":2008,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; Institute of Health Economics; University of Alberta","funders":"Goddard Space Flight Center","keywords":"Genetic testing; Nutrigenomics; Transparency (behavior); Business; Legislation; Enforcement; Public economics; Internet privacy; Political science; Economics; Law; Genetics; Biology; Computer science; Gene","authors":[{"name":"Nola M. Ries","is_ca":true},{"name":"David Castle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03101518224973885,"gpt":0.350155513555637,"spread":0.3191403313058981,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000298848,0.000487415,0.001351668,0.0002411026,0.0001353001,0.00004484235,0.0003418156,0.0007920983,0.000005616193],"category_scores_gemma":[0.0002952198,0.000351069,0.0003104724,0.00009268884,0.0003996028,0.000005347465,0.0002321721,0.0007076195,0.000003450038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005231956,"about_ca_system_score_gemma":0.0005539584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000142186,"about_ca_topic_score_gemma":0.0000988337,"domain_scores_codex":[0.9980327,0.0004565915,0.0007460514,0.0004225429,0.00008201511,0.0002601373],"domain_scores_gemma":[0.9981223,0.0001864898,0.0006817727,0.000234922,0.0004767078,0.0002977964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002255583,0.0009235372,0.001514792,0.009202265,0.004769641,0.0001336983,0.00397278,0.00000306132,0.009388684,0.003027246,0.00864641,0.9561623],"study_design_scores_gemma":[0.000558714,0.0009299999,0.00003066483,0.001380822,0.0002841669,0.000597255,0.0001747696,9.333821e-7,0.0008172818,0.0003297707,0.9945219,0.000373793],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009305092,0.9888718,0.0002800391,0.00008621555,0.000426522,0.0003172614,0.0003791368,0.000003295734,0.0003306187],"genre_scores_gemma":[0.002825028,0.9949108,0.001025283,0.0003725657,0.0006235124,0.00001125882,0.0001379144,0.00004417339,0.00004942989],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9858754,"threshold_uncertainty_score":0.9998941,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967304074","doi":"10.1089/omi.2006.0003","title":"Application of DNA Microarrays in the Study of Human Obesity and Type 2 Diabetes","year":2007,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Retinoids in leukemia and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Newfoundland and Labrador Centre for Applied Health Research","keywords":"DNA microarray; GLUT4; Biology; Microarray; Type 2 diabetes; Obesity; Gene expression profiling; Gene; Microarray analysis techniques; Bioinformatics; Disease; Gene expression; Genetics; Endocrinology; Diabetes mellitus; Medicine; Internal medicine; Insulin resistance","authors":[{"name":"Guang Sun","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02361491805184589,"gpt":0.3394690968782459,"spread":0.3158541788264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008830779,0.0002037987,0.0009052921,0.0001412684,0.00002550849,0.000005172653,0.0004269437,0.0003056253,0.000001404717],"category_scores_gemma":[0.0001619604,0.0001098488,0.0001517906,0.0001669067,0.0002242167,0.000002268415,0.00006525322,0.0003221258,2.170613e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002282406,"about_ca_system_score_gemma":0.0001513991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000132562,"about_ca_topic_score_gemma":0.00003550166,"domain_scores_codex":[0.9985005,0.0003625298,0.0007804474,0.0001778752,0.00006447465,0.0001141966],"domain_scores_gemma":[0.998168,0.0001091241,0.00118316,0.0002040442,0.0003143393,0.00002132759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002092894,0.001987804,0.02536624,0.004717433,0.001400251,0.0000099873,0.002396225,0.000001388477,0.4783481,0.001760472,0.0001737876,0.483629],"study_design_scores_gemma":[0.003130382,0.02772422,0.001466305,0.00488554,0.001984411,0.0003118949,0.01040721,0.000005755878,0.1996759,0.001837402,0.7473255,0.001245528],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.4051017,0.5944179,0.0001110517,0.000002000384,0.00004389824,0.0002294837,0.000008136844,3.002941e-7,0.00008551827],"genre_scores_gemma":[0.2554146,0.7443105,0.0001048704,0.00001096632,0.00008908259,0.00000648088,0.00004456244,0.00001040105,0.000008525334],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7471517,"threshold_uncertainty_score":0.4479504,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004683819","doi":"10.1089/omi.2012.0119","title":"“OMICS” of Human Sperm: Profiling Protein Phosphatases","year":2013,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Kinexus Bioinformatics Corporation (Canada); University of British Columbia","funders":"Fundação para a Ciência e a Tecnologia; Universidade de Aveiro","keywords":"Profiling (computer programming); Biology; Computational biology; Phosphatase; Sperm; Data science; Bioinformatics; Genetics; Computer science; Phosphorylation","authors":[{"name":"Margarida Fardilha","is_ca":false},{"name":"Mónica Ferreira","is_ca":false},{"name":"Steven Pelech","is_ca":true},{"name":"Sandra I. Vieira","is_ca":false},{"name":"Sandra Rebelo","is_ca":false},{"name":"Luís Korrodi‐Gregório","is_ca":false},{"name":"Mário Sousa","is_ca":false},{"name":"Alberto Barros","is_ca":false},{"name":"Vladimiro Silva","is_ca":false},{"name":"Odete A. B. da Cruz e Silva","is_ca":false},{"name":"Edgar F. da Cruz e Silva","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0216896835030487,"gpt":0.2955191798825533,"spread":0.2738294963795046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002091321,0.0001295778,0.0004402223,0.0001499994,0.00003164842,0.000007749421,0.00008822824,0.0001051096,0.0002531391],"category_scores_gemma":[0.0006273919,0.00007587692,0.0001527201,0.00009462456,0.0001692416,0.00007667825,0.00002027372,0.0002802823,0.00001377457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000699336,"about_ca_system_score_gemma":0.0001338513,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009077949,"about_ca_topic_score_gemma":0.000004315447,"domain_scores_codex":[0.9991242,0.00006246846,0.0004966006,0.0001060927,0.00007683216,0.0001338097],"domain_scores_gemma":[0.9985237,0.0000706069,0.0004856553,0.0001135102,0.0007273077,0.00007919274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001699036,0.0001496612,0.02058277,0.00002212219,0.000144587,0.0000130046,0.0001532217,7.482146e-7,0.9624109,0.0137381,0.0002475235,0.002367484],"study_design_scores_gemma":[0.001304172,0.003193683,0.005570118,0.0002188478,0.00008453859,0.0002929723,0.0009054449,0.0001173368,0.9835426,0.004227547,0.0004485459,0.00009419255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963797,0.0007156383,0.001264787,0.000295076,0.0001868046,0.0003470207,0.00001344419,0.000005681084,0.00079181],"genre_scores_gemma":[0.9930034,0.00005701897,0.00642539,0.0001111976,0.0002046057,0.000008259816,0.00003496479,0.00001138851,0.000143766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02113173,"threshold_uncertainty_score":0.3094171,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069206422","doi":"10.1089/153623103322637661","title":"Reduced Models of the Circadian Oscillators in <i>Neurospora crassa</i> and <i>Drosophila melanogaster</i> Illustrate Mechanistic Similarities","year":2003,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; Fonds de Recherche du Québec - Santé; Defense Advanced Research Projects Agency; National Institutes of Health","keywords":"Neurospora crassa; Circadian rhythm; Biology; Neurospora; Entrainment (biomusicology); Negative feedback; Circadian clock; Drosophila melanogaster; Rhythm; Evolutionary biology; Genetics; Cell biology; Gene; Neuroscience; Physics","authors":[{"name":"Paul Smolen","is_ca":false},{"name":"Douglas A. Baxter","is_ca":false},{"name":"John H. Byrne","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02768138716614401,"gpt":0.2472368514885962,"spread":0.2195554643224522,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000447137,0.0002131531,0.0004806533,0.0001982409,0.0000800803,0.00002524076,0.0002689048,0.0001551013,0.000009216379],"category_scores_gemma":[0.001006297,0.0001335875,0.0001337591,0.0003025681,0.0005204116,0.0001475471,0.00004106829,0.0005300445,7.390148e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000670964,"about_ca_system_score_gemma":0.0002519951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001620992,"about_ca_topic_score_gemma":0.00003112878,"domain_scores_codex":[0.9982351,0.0004957499,0.0006162468,0.0002486162,0.0001257888,0.0002785052],"domain_scores_gemma":[0.998594,0.0004301841,0.0005589946,0.0001790158,0.0001242687,0.0001134941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005021163,0.00003327419,0.00194071,0.00000741139,0.000007909637,0.00002647138,0.0008081843,0.0001037822,0.5371667,0.4597431,0.00001264417,0.00009964994],"study_design_scores_gemma":[0.001045655,0.0004470221,0.001375828,0.0001378626,0.00002581922,0.001062767,0.0008103683,0.0004949025,0.9118286,0.08160452,0.0009509267,0.0002156739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994837,0.0005361984,0.0003365788,0.0003965774,0.0008311921,0.0001937803,0.00006148603,0.000003822515,0.002803315],"genre_scores_gemma":[0.998642,0.0006384829,0.0001564627,0.0004472063,0.00003689655,0.000003331476,3.649829e-7,0.00001618543,0.00005912221],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3781386,"threshold_uncertainty_score":0.544754,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1536526355","doi":"10.1089/omi.2007.0042","title":"Integrating Anticipated Nutrigenomics Bioscience Applications with Ethical Aspects","year":2008,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Nutrigenomics; Bioethics; Engineering ethics; Medicine; Context (archaeology); Engineering; Biology; Genetics","authors":[{"name":"Lise Lévesque","is_ca":true},{"name":"Vural Özdemir","is_ca":true},{"name":"Bart Gremmen","is_ca":false},{"name":"Béatrice Godard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01524385118833278,"gpt":0.2880672243781595,"spread":0.2728233731898267,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002488348,0.0001987029,0.0002867169,0.0001266062,0.0001807939,0.00001731624,0.0003338973,0.0002640055,0.000009860437],"category_scores_gemma":[0.0002806831,0.0001310394,0.0001276674,0.0001920116,0.0007051987,0.000005909594,0.00005014213,0.0004016487,0.000003248744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004216109,"about_ca_system_score_gemma":0.0007086128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009692079,"about_ca_topic_score_gemma":0.00003964015,"domain_scores_codex":[0.9988326,0.0001376305,0.0004209257,0.0002683384,0.0001009223,0.0002395568],"domain_scores_gemma":[0.9983632,0.00005474489,0.0003789685,0.0002079429,0.0008196256,0.000175522],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007598158,0.0003551853,0.02051402,0.00001224759,0.0001499456,0.00003037743,0.0003694739,0.00002815199,0.9520913,0.02389005,0.0006955147,0.001103939],"study_design_scores_gemma":[0.00505278,0.008916246,0.008619779,0.000153199,0.0001644347,0.003665776,0.002718879,0.0002484747,0.8732549,0.01130375,0.08483256,0.001069255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8936304,0.001276704,0.1032306,0.0003743912,0.0001211326,0.0002045388,0.00005931352,0.000006448457,0.001096504],"genre_scores_gemma":[0.984809,0.001719308,0.01237196,0.0006060156,0.0003530531,0.00001186773,0.00005770618,0.00001643866,0.00005457943],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09117868,"threshold_uncertainty_score":0.534363,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979196241","doi":"10.1089/omi.2009.0013","title":"Genome–Environment Interactions and Prospective Technology Assessment: Evolution from Pharmacogenomics to Nutrigenomics and Ecogenomics","year":2009,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Nutrition, Genetics, and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec","funders":"","keywords":"Nutrigenomics; Pharmacogenomics; Genomics; Genome; Data science; Biology; Biotechnology; Bioinformatics; Genetics; Computer science; Gene","authors":[{"name":"Vural Özdemir","is_ca":true},{"name":"Arno G. Motulsky","is_ca":false},{"name":"Eugene Kolker","is_ca":false},{"name":"Béatrice Godard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01248780909350767,"gpt":0.3197452443533715,"spread":0.3072574352598639,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002369415,0.0005515702,0.001296112,0.0005257755,0.0001375826,0.00005120624,0.000363202,0.0005099554,0.00001306625],"category_scores_gemma":[0.0000936135,0.0004709592,0.0003175394,0.0001294152,0.0003005175,0.00001072936,0.0002556958,0.000568374,0.000005193222],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000522609,"about_ca_system_score_gemma":0.0005206443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006857859,"about_ca_topic_score_gemma":0.00001574112,"domain_scores_codex":[0.9977939,0.000212735,0.0009576799,0.0006498966,0.00007106321,0.0003147914],"domain_scores_gemma":[0.998134,0.00006583704,0.0009578951,0.0003053672,0.0002519504,0.000284992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001135946,0.001176973,0.001568536,0.0006448547,0.004419309,0.00004961329,0.0003902796,0.00003844928,0.1680901,0.006127245,0.0003505022,0.8160082],"study_design_scores_gemma":[0.001183301,0.001773447,0.0002942763,0.0004737912,0.001077019,0.0003758413,0.0004030508,0.00001032515,0.001033718,0.006318463,0.9864018,0.000654976],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02539015,0.961478,0.01066815,0.0001043088,0.0003050118,0.0007946926,0.001159764,0.000006013002,0.00009394073],"genre_scores_gemma":[0.006649893,0.9815069,0.01045055,0.00009903139,0.0007259593,0.00004324806,0.0004315226,0.00005278931,0.00004007711],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9860513,"threshold_uncertainty_score":0.9997742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1193736222","doi":"10.1089/omi.2013.0075","title":"Spectroimmunohistochemistry: A Novel Form of MALDI Mass Spectrometry Imaging Coupled to Immunohistochemistry for Tracking Antibodies","year":2013,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"MALDI imaging; Immunohistochemistry; Antibody; Mass spectrometry imaging; Biomarker; Mass spectrometry; Antigen; Biomarker discovery; Monoclonal antibody; Primary and secondary antibodies; Computational biology; Chemistry; Proteomics; Pathology; Biology; Matrix-assisted laser desorption/ionization; Medicine; Chromatography; Immunology; Biochemistry","authors":[{"name":"Rémi Longuespée","is_ca":true},{"name":"C. Boyon","is_ca":false},{"name":"Annie Desmons","is_ca":false},{"name":"Olivier Kerdraon","is_ca":false},{"name":"Éric Leblanc","is_ca":false},{"name":"Isabelle Farré","is_ca":false},{"name":"D. Vinatier","is_ca":false},{"name":"Robert Day","is_ca":false},{"name":"Isabelle Fournier","is_ca":false},{"name":"Michel Salzet","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01194937222034015,"gpt":0.2958625190939463,"spread":0.2839131468736061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002943709,0.0003510884,0.0007987269,0.0002503578,0.0001031164,0.00004656237,0.00072364,0.0001748016,0.001094107],"category_scores_gemma":[0.0004573127,0.0002818648,0.0004318347,0.000283502,0.0002236293,0.0001288965,0.00007737039,0.0004996326,0.000002740178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005117569,"about_ca_system_score_gemma":0.0001588054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006650804,"about_ca_topic_score_gemma":0.000001121079,"domain_scores_codex":[0.9980688,0.00000876984,0.001042026,0.0003088347,0.0001422143,0.0004293276],"domain_scores_gemma":[0.9970148,0.000273586,0.001153471,0.0003954855,0.001036549,0.0001261713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000137938,0.0001449683,0.001018076,0.00008125066,0.0001698114,0.000001204849,0.0001805144,0.000001181091,0.9883048,0.008900306,0.0004168543,0.0006430955],"study_design_scores_gemma":[0.0007247212,0.0002052914,0.0001774591,0.000158989,0.00005802375,0.000153326,0.001067341,0.0003855109,0.9809391,0.01477042,0.001071426,0.0002883215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.736262,0.00116079,0.2517671,0.0008975778,0.0001101858,0.0003901716,0.0002343427,0.00004444155,0.009133361],"genre_scores_gemma":[0.8662349,0.0001241002,0.132866,0.00005717852,0.0001842986,0.00008216032,0.00004430687,0.00003677431,0.0003702651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1299729,"threshold_uncertainty_score":0.9999633,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2033675250","doi":"10.1089/omi.2011.0121","title":"Molecular Pathways and Crosstalk Characterizing the Cardiorenal Syndrome","year":2012,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Chronic Kidney Disease and Diabetes","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Emergent BioSolutions (Canada)","funders":"Fresenius Medical Care North America","keywords":"Cardiorenal syndrome; Dyslipidemia; Crosstalk; Bioinformatics; Inflammation; Context (archaeology); Kidney disease; Diabetic nephropathy; Biology; Kidney; Medicine; Diabetes mellitus; Internal medicine; Endocrinology","authors":[{"name":"Irmgard Mühlberger","is_ca":true},{"name":"Konrad Mönks","is_ca":true},{"name":"Raul Fechete","is_ca":true},{"name":"Gert Mayer","is_ca":false},{"name":"Rainer Oberbauer","is_ca":false},{"name":"Bernd Mayer","is_ca":true},{"name":"Paul Perco","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0138163136182536,"gpt":0.2694450790105249,"spread":0.2556287653922713,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003378772,0.0001209737,0.000350737,0.00005043232,0.00005258231,0.00001531619,0.00007104231,0.00007125382,0.00002635839],"category_scores_gemma":[0.0002866893,0.00005795024,0.0001630563,0.0000557195,0.00022068,0.00007982359,0.00003768328,0.0002716011,0.000003598867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006355633,"about_ca_system_score_gemma":0.00018252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003790346,"about_ca_topic_score_gemma":2.792178e-7,"domain_scores_codex":[0.9993128,0.00008271929,0.0002474843,0.00007270512,0.00006829458,0.0002160396],"domain_scores_gemma":[0.9992538,0.0001082709,0.0001886271,0.00009970659,0.0001448205,0.0002047755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003246409,0.0001553703,0.1158552,0.00003294996,0.0008032124,0.0001718931,0.001802352,2.582312e-7,0.8592231,0.01566972,0.0003138809,0.005647446],"study_design_scores_gemma":[0.007180916,0.004859257,0.5627951,0.0008411462,0.001385419,0.02042753,0.006050851,0.0001509537,0.3455589,0.003289868,0.04678646,0.0006736491],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893612,0.008740972,0.0002815303,0.0008115357,0.0002340438,0.00008225707,0.00003009709,0.000003605729,0.0004547956],"genre_scores_gemma":[0.9982561,0.0003291489,0.000188798,0.0009802689,0.0002064112,0.000002626412,0.000009991078,0.000009070359,0.00001759659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5136642,"threshold_uncertainty_score":0.2363142,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1857639441","doi":"10.1089/omi.2015.0075","title":"An Appeal to the Global Health Community for a Tripartite Innovation: An “Essential Diagnostics List,” “Health in All Policies,” and “See-Through 21 <sup>st</sup> Century Science and Ethics”","year":2015,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Science, Research, and Medicine","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Pancreas Centre (Canada); University of Toronto; York University","funders":"Economic and Social Research Council","keywords":"Appeal; Corporate governance; Big data; Intellectual property; Transparency (behavior); Currency; Business; Political science; Public relations; Knowledge management; Economics; Computer science; Management; Law","authors":[{"name":"Edward S. Dove","is_ca":false},{"name":"O Barlas","is_ca":false},{"name":"Kean Birch","is_ca":true},{"name":"Catharina Boehme","is_ca":false},{"name":"Alexander Borda‐Rodriguez","is_ca":false},{"name":"William Byne","is_ca":false},{"name":"Florence Chaverneff","is_ca":false},{"name":"Yavuz Çoşkun","is_ca":false},{"name":"Marja­‐Liisa Dahl","is_ca":false},{"name":"Türkay Dereli","is_ca":false},{"name":"Shyam Diwakar","is_ca":false},{"name":"Levent Elbeylı","is_ca":false},{"name":"László Endrényi","is_ca":true},{"name":"Belgin Eroğlu-Kesim","is_ca":false},{"name":"Lynnette R. Ferguson","is_ca":false},{"name":"Kıvanç Güngör","is_ca":false},{"name":"Ulvi Kahraman Gürsoy","is_ca":false},{"name":"Nezih Hekim","is_ca":false},{"name":"Farah Huzair","is_ca":false},{"name":"Kabeer Kaushik","is_ca":false},{"name":"Ilona Kickbusch","is_ca":false},{"name":"Olcay Kıroğlu","is_ca":false},{"name":"Eugene Kolker","is_ca":false},{"name":"Eija Könönen","is_ca":false},{"name":"Biaoyang Lin","is_ca":false},{"name":"Adrián LLerena","is_ca":false},{"name":"Faruk Malhan","is_ca":false},{"name":"Bipin G. Nair","is_ca":false},{"name":"George P. Patrinos","is_ca":false},{"name":"Semra Şardaş","is_ca":false},{"name":"Özlem Sert","is_ca":false},{"name":"Sanjeeva Srivastava","is_ca":false},{"name":"Lotte Steuten","is_ca":true},{"name":"Cengiz Toraman","is_ca":false},{"name":"Effy Vayena","is_ca":false},{"name":"Wei Wang","is_ca":false},{"name":"Louise Warnich","is_ca":false},{"name":"Vural Özdemir","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1647533918995771,"gpt":0.506860711954684,"spread":0.3421073200551069,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01194533,0.000155367,0.0005229774,0.000326553,0.0003773985,0.00005921478,0.0003857834,0.0001092353,0.00000195934],"category_scores_gemma":[0.007864916,0.00008744945,0.00002478984,0.001186756,0.0016986,0.0002300146,0.0001097028,0.001083645,2.678282e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006383171,"about_ca_system_score_gemma":0.005607754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003558812,"about_ca_topic_score_gemma":0.003875753,"domain_scores_codex":[0.9974517,0.0008275092,0.0006434041,0.0002137304,0.0003664332,0.0004972582],"domain_scores_gemma":[0.9961185,0.0005434186,0.0003618612,0.000244638,0.002094066,0.0006375454],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"qualitative","study_design_gemma":"qualitative","study_design_scores_codex":[0.007323225,0.00254437,0.07974523,0.0002512629,0.0001764855,0.00003560689,0.4839075,0.0001045337,0.004309874,0.2842714,0.02057707,0.1167535],"study_design_scores_gemma":[0.02246499,0.0974574,0.08831,0.001559159,0.000104753,0.002793449,0.4216029,0.014404,0.001087564,0.0356856,0.313795,0.0007351582],"study_design_candidate":"qualitative","study_design_consensus":"qualitative","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9150703,0.001496709,0.004450885,0.07791975,0.0002424573,0.0006172836,0.0001149433,0.000005181549,0.00008250395],"genre_scores_gemma":[0.9676268,0.00292776,0.003335981,0.02565354,0.0003913284,0.000009340057,0.00004188221,0.000007038665,0.000006406615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2932179,"threshold_uncertainty_score":0.9947914,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2086856330","doi":"10.1089/omi.2013.0158","title":"Legal Agreements and the Governance of Research Commons: Lessons from Materials Sharing in Mouse Genomics","year":2014,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Animal testing and alternatives","field":"Veterinary","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"RIKEN; National Institutes of Health; University of British Columbia; European Commission; INFRAFRONTIER; Medical Research Council; University of Manitoba; Regeneron Pharmaceuticals; University of California, Davis; Genome Canada; Hospital for Sick Children; Australian Government; University of Calgary; Wellcome Trust; Stem Cell Network; Canadian Institutes of Health Research; Wellcome","keywords":"Commons; Corporate governance; Enforcement; Business; Political science; Knowledge management; Computer science; Law; Finance","authors":[{"name":"Amrita Mishra","is_ca":true},{"name":"Tania Bubela","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1995240698419423,"gpt":0.4482589128042717,"spread":0.2487348429623294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00211518,0.000111092,0.0004276066,0.00008096636,0.00006282905,0.00003419507,0.0004286228,0.00006166031,0.00002273024],"category_scores_gemma":[0.001280359,0.00006176875,0.00004878861,0.00006597644,0.0005928826,0.00008028271,0.0002216215,0.0004236076,0.000002028796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007776197,"about_ca_system_score_gemma":0.00004190624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003069437,"about_ca_topic_score_gemma":0.0002981035,"domain_scores_codex":[0.9983511,0.0007275391,0.0005140358,0.0001469919,0.00009339672,0.0001669546],"domain_scores_gemma":[0.9979371,0.001130049,0.0005579786,0.0001347123,0.0002090319,0.00003108945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004191835,0.00009542958,0.01689698,0.0000119359,0.0001533223,0.00002220446,0.003097852,0.000004580056,0.7436682,0.2294508,0.00005920969,0.00234764],"study_design_scores_gemma":[0.0201854,0.01388143,0.1799198,0.002619888,0.0001036257,0.0006524756,0.01845049,0.005882116,0.5032617,0.2451254,0.008955068,0.0009626034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976346,0.0004676533,0.0003247676,0.0005202798,0.0001155422,0.00008227548,0.0001313977,0.000002235087,0.000721249],"genre_scores_gemma":[0.9979678,0.0004941365,0.001270109,0.00003874751,0.0001285461,0.000003109356,0.000003576833,0.000009428186,0.00008453545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2404065,"threshold_uncertainty_score":0.4640092,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2178869261","doi":"10.1089/omi.2015.0123","title":"Biobanks in Oral Health: Promises and Implications of Post-Neoliberal Science and Innovation","year":2015,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"Wellcome Trust","keywords":"Biobank; Neoliberalism (international relations); Politics; Political science; Public relations; Law; Biology; Bioinformatics","authors":[{"name":"Kean Birch","is_ca":true},{"name":"Edward S. Dove","is_ca":false},{"name":"Margaret Chiappetta","is_ca":true},{"name":"Ulvi Kahraman Gürsoy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.4403812691196164,"gpt":0.5898660823255204,"spread":0.149484813205904,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.005812291,0.00006344532,0.0003232785,0.0006593087,0.00002910979,0.00001001665,0.0001169333,0.0001155074,0.000002407788],"category_scores_gemma":[0.0294825,0.00003917918,0.00001630915,0.0007673459,0.001488386,0.00008721259,0.00007613772,0.0007546785,2.384621e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001761246,"about_ca_system_score_gemma":0.003331548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001265105,"about_ca_topic_score_gemma":0.000218659,"domain_scores_codex":[0.9988628,0.0000803616,0.0006107317,0.0001286777,0.000178356,0.0001390619],"domain_scores_gemma":[0.9931526,0.001032495,0.0003867671,0.00009615008,0.005192738,0.0001393113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","study_design_scores_codex":[0.001160709,0.0002735648,0.204398,0.0000682855,0.00004232143,0.00000455969,0.003427573,3.350646e-7,0.2198186,0.5236009,0.0002049635,0.04700025],"study_design_scores_gemma":[0.005178908,0.01524826,0.4838881,0.0006609989,0.00002040537,0.0006224418,0.004149522,0.0001897489,0.02165344,0.4673724,0.0008543126,0.000161385],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9764059,0.0004836878,0.0002137003,0.02231496,0.00005682624,0.0001598923,0.00001201032,0.000001333748,0.0003517301],"genre_scores_gemma":[0.9907917,0.0006042785,0.007493014,0.001033139,0.00002894951,0.000002219171,0.000002662007,0.000003602799,0.00004047815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2794902,"threshold_uncertainty_score":0.9786926,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2625674470","doi":"10.1089/omi.2017.0049","title":"Multi-omics Integrative Investigation of Fatty Acid Metabolism in Obese and Lean Subcutaneous Tissue","year":2017,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Adipose Tissue and Metabolism","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Lipogenesis; Adipose tissue; Fatty acid; Lipolysis; Fatty acid metabolism; Polyunsaturated fatty acid; Endocrinology; Internal medicine; Biology; White adipose tissue; Obesity; Fatty acid synthase; Biochemistry; Medicine","authors":[{"name":"Flavia Badoud","is_ca":true},{"name":"Dyanne Brewer","is_ca":true},{"name":"Armen Charchoglyan","is_ca":true},{"name":"Daniel J. Cuthbertson","is_ca":false},{"name":"David M. Mutch","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03087277048498331,"gpt":0.3276451845578101,"spread":0.2967724140728268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005642641,0.0002736034,0.001128909,0.0003473676,0.00008573601,0.00002131089,0.0002705223,0.0002575293,0.00002122054],"category_scores_gemma":[0.001695108,0.0001708856,0.0001273864,0.0000904058,0.0008261977,0.0001970264,0.00008262762,0.0007014246,0.000003094886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007455526,"about_ca_system_score_gemma":0.000267466,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002483384,"about_ca_topic_score_gemma":0.0003260173,"domain_scores_codex":[0.9985073,0.0001571969,0.0007800618,0.000221362,0.0001079652,0.000226099],"domain_scores_gemma":[0.9974943,0.0001454644,0.001221668,0.0002849102,0.0006724826,0.0001811445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00098879,0.0001076591,0.02139906,0.0000278374,0.0002360156,0.0001982925,0.007363238,8.426787e-7,0.9430608,0.009007024,0.00004817849,0.0175623],"study_design_scores_gemma":[0.004143631,0.001546396,0.09783567,0.0003815768,0.0002689661,0.001429144,0.002656889,0.0001756912,0.8821542,0.006452895,0.002707786,0.0002471122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989957,0.005601028,0.002672892,0.0007639328,0.0004404901,0.0002809436,0.00004696629,0.000004442657,0.0002322611],"genre_scores_gemma":[0.972143,0.003291329,0.02388026,0.0001699505,0.0001850041,0.000003956919,0.00001465627,0.00002017065,0.0002916906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07643661,"threshold_uncertainty_score":0.6968512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2901781934","doi":"10.1089/omi.2018.0162","title":"IMass Time: The Future, in Future!","year":2018,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Medical Research Council; National Health and Medical Research Council; National Natural Science Foundation of China","keywords":"Glycomics; Data science; Computer science; Lipidomics; Proteomics; Nanotechnology; Metabolomics; Computational biology; Chemistry; Bioinformatics; Biology","authors":[{"name":"Qingwei Ma","is_ca":false},{"name":"Eric Adua","is_ca":false},{"name":"Mary C. Boyce","is_ca":false},{"name":"Xingang Li","is_ca":false},{"name":"Guang Ji","is_ca":true},{"name":"Wei Wang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006640342175275205,"gpt":0.2789176876059731,"spread":0.2722773454306979,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002769192,0.0001229711,0.000231587,0.00009125352,0.00006116293,0.00001630877,0.0004280598,0.0001392994,0.002188361],"category_scores_gemma":[0.00004703048,0.00006214873,0.000107192,0.0002008409,0.0002058829,0.00003575984,0.00004266206,0.0004816993,0.0000186834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001036603,"about_ca_system_score_gemma":0.00006906631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009928883,"about_ca_topic_score_gemma":0.00005013408,"domain_scores_codex":[0.9992873,0.00004211075,0.0003461066,0.0001114017,0.00005503783,0.0001580494],"domain_scores_gemma":[0.9991153,0.00009536538,0.0003267979,0.0001865663,0.0002373135,0.00003859839],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001595252,0.0001352586,0.003725725,0.000004864651,0.00009177888,0.000006758069,0.0004687884,1.689879e-7,0.5780867,0.3878341,0.01075247,0.01873388],"study_design_scores_gemma":[0.0004658666,0.0003887102,0.0008663224,0.0000332228,0.0000198282,0.0002028417,0.001658198,0.0001303057,0.2309871,0.05782812,0.7072403,0.0001791757],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7978902,0.002731023,0.00334011,0.01918778,0.0007548156,0.0001928858,0.00009919742,0.00004711064,0.1757568],"genre_scores_gemma":[0.9893681,0.0007709829,0.005650558,0.0003068661,0.003276374,0.00001085267,0.000008606593,0.00001314191,0.0005945245],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6964878,"threshold_uncertainty_score":0.9987237,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1543782282","doi":"10.1089/omi.2006.10.185","title":"National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge","year":2006,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"National Human Genome Research Institute","keywords":"Ontology; Biomedicine; Computer science; Dissemination; Open Biomedical Ontologies; Context (archaeology); Resource (disambiguation); Knowledge management; Data science; Upper ontology; World Wide Web; Quality (philosophy); Semantic Web; Suggested Upper Merged Ontology; Bioinformatics","authors":[{"name":"Daniel L. Rubin","is_ca":false},{"name":"Suzanna Lewis","is_ca":false},{"name":"Chris Mungall","is_ca":false},{"name":"Sima Misra","is_ca":false},{"name":"Monte Westerfield","is_ca":false},{"name":"Michael Ashburner","is_ca":false},{"name":"Ida Sim","is_ca":false},{"name":"Christopher G. Chute","is_ca":false},{"name":"Harold R. Solbrig","is_ca":false},{"name":"Margaret‐Anne Storey","is_ca":true},{"name":"Barry Smith","is_ca":false},{"name":"John Day-Richter","is_ca":false},{"name":"Natalya F. Noy","is_ca":false},{"name":"Mark A. Musen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01310860981620077,"gpt":0.3132670196152181,"spread":0.3001584097990173,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005257669,0.0001571746,0.0003682601,0.0001889945,0.00008211561,0.00001012251,0.0002627851,0.0002979423,0.00001803162],"category_scores_gemma":[0.001582799,0.0001011004,0.0001230729,0.0002707418,0.001008355,0.000006634241,0.00005685505,0.0001353891,7.614449e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005437788,"about_ca_system_score_gemma":0.000449277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008651985,"about_ca_topic_score_gemma":0.00005957281,"domain_scores_codex":[0.9987367,0.00009423845,0.0006075521,0.0002257443,0.0001180182,0.0002177665],"domain_scores_gemma":[0.9976599,0.0001211276,0.0005247256,0.0001026009,0.001539253,0.00005241235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001936748,0.000241793,0.004622601,0.00002440456,0.0001375499,0.000001286938,0.0002075491,0.000004056083,0.9664029,0.006812103,0.01643942,0.00491264],"study_design_scores_gemma":[0.004729817,0.003541905,0.002940605,0.000139917,0.0000743173,0.0003247062,0.0008646572,0.0001733515,0.5172005,0.01489577,0.4547881,0.0003263879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8004605,0.002090266,0.1932342,0.00108804,0.002121966,0.0001932526,0.0003580835,0.000008637447,0.0004450179],"genre_scores_gemma":[0.9679149,0.0000753904,0.03035553,0.00009840266,0.0006309539,0.0000031648,0.000766602,0.00001393395,0.0001411401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4492024,"threshold_uncertainty_score":0.4122756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2235826502","doi":"10.1089/omi.2015.0174","title":"Early Stage Health Technology Assessment for Precision Biomarkers in Oral Health and Systems Medicine","year":2016,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Health Systems, Economic Evaluations, Quality of Life","field":"Economics, Econometrics and Finance","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Pancreas Centre (Canada)","funders":"","keywords":"Biomarker; Precision medicine; Medicine; Upstream (networking); Health care; Risk analysis (engineering); Health technology; Biomarker discovery; Intensive care medicine; Computer science; Pathology; Political science","authors":[{"name":"Lotte Steuten","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.297870135063838,"gpt":0.49868405376962,"spread":0.200813918705782,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02248571,0.0002074894,0.001820825,0.00123493,0.0001008479,0.00002061387,0.0002615826,0.0002018417,0.00002460536],"category_scores_gemma":[0.004685111,0.0001408173,0.00008212627,0.000215869,0.0002747067,0.0002213312,0.00004110494,0.0002316356,0.00000849113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001568787,"about_ca_system_score_gemma":0.0007358299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001016947,"about_ca_topic_score_gemma":0.0003646379,"domain_scores_codex":[0.9935782,0.0007164986,0.004847537,0.0003783372,0.00005373703,0.0004256888],"domain_scores_gemma":[0.9918258,0.001907621,0.005589294,0.000216288,0.0002197256,0.0002412688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002596329,0.0001097238,0.1672563,0.0002232782,0.00028078,0.000001423731,0.002290517,0.000005934375,0.0001871365,0.8087106,0.008352382,0.01232222],"study_design_scores_gemma":[0.0298962,0.03741536,0.1012882,0.006777199,0.00002251931,0.000277347,0.06260189,0.006205411,0.00006056603,0.2613783,0.4925123,0.00156469],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4415474,0.02596439,0.2491371,0.2786131,0.00196777,0.001817526,0.0007090908,0.0000188535,0.0002247228],"genre_scores_gemma":[0.9670338,0.006858317,0.02027114,0.005101835,0.0003056861,0.00009827575,0.00002043408,0.00004019571,0.0002703121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5473323,"threshold_uncertainty_score":0.7793143,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3017384142","doi":"10.1089/omi.2020.0045","title":"Blockchain for Digital Health: Prospects and Challenges","year":2020,"lang":"en","type":"review","venue":"OMICS A Journal of Integrative Biology","topic":"Legal, Health, Environmental and COVID-19 Challenges","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute on Governance","funders":"","keywords":"Blockchain; Distributed ledger; Key (lock); Intersection (aeronautics); Computer science; Field (mathematics); Data science; Health care; Digital health; Knowledge management; Computer security; Political science; Engineering","authors":[{"name":"Nikolaos Evangelatos","is_ca":false},{"name":"Vural Özdemir","is_ca":true},{"name":"Angela Brand","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08977062487006647,"gpt":0.372226190569611,"spread":0.2824555656995446,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003418526,0.0004505788,0.002995519,0.0001851965,0.0000677449,0.00001781316,0.0001667959,0.0003610852,0.000008605451],"category_scores_gemma":[0.0004647227,0.0002532511,0.0005359701,0.00006833861,0.0002182778,0.0000352455,0.00006976421,0.0008548253,0.000005059541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004361752,"about_ca_system_score_gemma":0.001245473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003424347,"about_ca_topic_score_gemma":0.00001022985,"domain_scores_codex":[0.9980756,0.0001422496,0.0009988371,0.0003707325,0.0001055161,0.0003070455],"domain_scores_gemma":[0.9975581,0.0005206852,0.001235388,0.0001390361,0.00009556139,0.0004512054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001725519,0.0001359599,0.000005090772,0.01222148,0.0004878743,0.00003857246,0.0008839154,1.380283e-8,0.00000272086,0.009893892,0.0001540476,0.9760039],"study_design_scores_gemma":[0.0008520604,0.00652531,0.000002497042,0.006166591,0.0002284985,0.0009879022,0.0006605088,0.000003958143,0.000003359822,0.002100572,0.9822846,0.0001841528],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00002278995,0.9791972,0.0001032772,0.0188664,0.0002509722,0.001063421,0.0002057643,0.0000087708,0.000281389],"genre_scores_gemma":[0.0001755802,0.9973276,0.0007636943,0.0007697035,0.0007420039,0.00004201767,0.00004451506,0.00004690497,0.00008801043],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9821305,"threshold_uncertainty_score":0.999992,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2557029147","doi":"10.1089/omi.2016.0112","title":"Cerebrospinal Fluid Metabolomics After Natural Product Treatment in an Experimental Model of Cerebral Ischemia","year":2016,"lang":"en","type":"article","venue":"OMICS A Journal of Integrative Biology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Chinese University of Hong Kong; University of Hong Kong; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Cerebrospinal fluid; Metabolomics; Ischemia; Natural product; Product (mathematics); Medicine; Neuroscience; Computational biology; Biology; Bioinformatics; Internal medicine; Biochemistry","authors":[{"name":"Tao Huan","is_ca":true},{"name":"Jia Wen Xian","is_ca":false},{"name":"Wing Nang Leung","is_ca":false},{"name":"Liang Li","is_ca":true},{"name":"C.W. Chan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0138473251835763,"gpt":0.2852125326930623,"spread":0.271365207509486,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002326577,0.000286079,0.0006004004,0.0001722744,0.00002674801,0.000008387085,0.0002484638,0.0001285095,0.00001866968],"category_scores_gemma":[0.0001232833,0.0001516398,0.0002370465,0.00008135919,0.0002598724,0.00002022661,0.00009128457,0.0001234154,7.854242e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001086711,"about_ca_system_score_gemma":0.0001978469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001276203,"about_ca_topic_score_gemma":0.00007893436,"domain_scores_codex":[0.9986109,0.000120304,0.0005916931,0.0003239647,0.00007857045,0.0002746203],"domain_scores_gemma":[0.9989712,0.00002079888,0.0003976481,0.0002412515,0.0002914685,0.00007760955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001689801,0.0002840439,0.01331536,0.000002716955,0.0001875542,0.000002102261,0.0002089594,0.00001475137,0.9802039,0.002474158,0.00004282437,0.001573798],"study_design_scores_gemma":[0.001690635,0.002542866,0.001400611,0.00001946971,0.00003277525,0.00003393669,0.0002858779,0.000104455,0.9926827,0.0002885803,0.0007298628,0.0001882258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893246,0.009040462,0.000824157,0.0001724355,0.0002988869,0.0001452546,0.0001030801,0.000001815195,0.00008926854],"genre_scores_gemma":[0.991348,0.001514284,0.006649487,0.00005977046,0.0002203603,0.00001856747,0.00001545873,0.00001864927,0.0001554471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01247877,"threshold_uncertainty_score":0.6183692,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}