{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":37,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":37,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"eabbdd27e787","filters":{"venue":"Oncogenesis"}},"results":[{"id":"W2461078957","doi":"10.1038/oncsis.2016.38","title":"An essential role of Ffar2 (Gpr43) in dietary fibre-mediated promotion of healthy composition of gut microbiota and suppression of intestinal carcinogenesis","year":2016,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health","keywords":"Gut flora; Bifidobacterium; Butyrate; Biology; Carcinogenesis; Dysbiosis; Short-chain fatty acid; Microbiome; Microbiology; Immunology; Food science; Genetics; Lactobacillus; Fermentation; Cancer","authors":[{"name":"Sathish Sivaprakasam","is_ca":false},{"name":"Ashish Gurav","is_ca":false},{"name":"Amy V. Paschall","is_ca":false},{"name":"Genevieve Coe","is_ca":false},{"name":"Kapil Chaudhary","is_ca":false},{"name":"Yimei Cai","is_ca":false},{"name":"Ravindra Kolhe","is_ca":false},{"name":"Pamela M. Martin","is_ca":false},{"name":"Darren D. Browning","is_ca":false},{"name":"Linsheng Huang","is_ca":false},{"name":"Haojie Shi","is_ca":false},{"name":"Humberto Sifuentes","is_ca":false},{"name":"Matam Vijay–Kumar","is_ca":false},{"name":"Stuart A. Thompson","is_ca":false},{"name":"David H. Munn","is_ca":false},{"name":"Andrew L. Mellor","is_ca":false},{"name":"Tracy L. McGaha","is_ca":true},{"name":"Shyang-Yun Pamela K. Shiao","is_ca":false},{"name":"Chelsea Cutler","is_ca":false},{"name":"Kebin Liu","is_ca":false},{"name":"Vadivel Ganapathy","is_ca":false},{"name":"Haocheng Li","is_ca":false},{"name":"Nagendra Singh","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008948218970227162,"gpt":0.2650956665919996,"spread":0.2561474476217724,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001818424,0.0001241798,0.0003181832,0.0001172874,0.0000210339,0.000001372434,0.0001150392,0.0001574261,0.00001364918],"category_scores_gemma":[0.00002073179,0.0001015869,0.00006348154,0.0001165187,0.0001511264,0.000008318042,0.00006539866,0.00002836788,3.029846e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000153501,"about_ca_system_score_gemma":0.0001328993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004149256,"about_ca_topic_score_gemma":0.0001476887,"domain_scores_codex":[0.9988353,0.0001517625,0.0005038494,0.0002569159,0.00009003253,0.0001621633],"domain_scores_gemma":[0.9991451,0.00002498858,0.0003469181,0.0002503892,0.0001671963,0.00006543978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006287072,0.000400413,0.109652,0.0003585344,0.00001788574,4.805673e-7,0.0000860725,0.000004311383,0.8852342,0.000003694002,0.00001601287,0.003597698],"study_design_scores_gemma":[0.0006526632,0.001013046,0.2924705,0.0001678525,0.00002149862,0.000007912192,0.00004054046,0.00001566833,0.7055221,0.000006568399,0.00001432863,0.00006729643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984179,0.0008815741,0.0001015861,0.00009366729,0.00003778388,0.0002067908,0.0002431305,0.000003000695,0.00001452619],"genre_scores_gemma":[0.9984173,0.0004528311,0.0008498605,0.00001067278,0.00003018059,0.000004425627,0.0002157163,0.00001450261,0.000004466076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1828185,"threshold_uncertainty_score":0.4142593,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4387965670","doi":"10.1038/s41389-023-00492-0","title":"Molecular mechanisms in colitis-associated colorectal cancer","year":2023,"lang":"en","type":"review","venue":"Oncogenesis","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; U.S. Department of Health and Human Services; AbbVie Canada; National Institutes of Health; Regeneron Pharmaceuticals; Eli Lilly and Company","keywords":"Field cancerization; Epigenetics; Carcinogenesis; Colorectal cancer; Inflammatory bowel disease; Biology; Pathogenesis; Mouse model of colorectal and intestinal cancer; Cancer research; Context (archaeology); Cancer; Disease; KRAS; Bioinformatics; Medicine; Immunology; Genetics; Pathology; Gene","authors":[{"name":"Royce Zhou","is_ca":false},{"name":"Noam Harpaz","is_ca":false},{"name":"Steven H. Itzkowitz","is_ca":false},{"name":"Ramon Parsons","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06234820072534254,"gpt":0.3710494475942608,"spread":0.3087012468689183,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003830191,0.0006500002,0.002829877,0.0005305668,0.00005024817,0.00002463502,0.0003187112,0.0009547693,0.0004208296],"category_scores_gemma":[0.0003383716,0.0006008145,0.0007374151,0.001736382,0.00006888164,0.00002038083,0.0001864827,0.0005114134,0.0002963538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002435023,"about_ca_system_score_gemma":0.002080128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000757558,"about_ca_topic_score_gemma":0.001787123,"domain_scores_codex":[0.9966586,0.0002818617,0.0008607634,0.000813561,0.000653084,0.0007321417],"domain_scores_gemma":[0.9985833,0.0002558099,0.0003546264,0.0004188261,0.0001368841,0.0002505143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008628609,0.0003330756,0.0001264925,0.01844803,0.001437326,0.001669351,0.00008363099,0.00001238957,0.0003464549,0.0001043323,0.001183536,0.9761691],"study_design_scores_gemma":[0.002404301,0.0009791602,0.001574124,0.06641082,0.007393303,0.0001923988,0.00006408435,0.00004802308,0.0021869,0.0003603701,0.9162651,0.002121453],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005764505,0.9892572,0.000008437034,0.00004481798,0.001152161,0.002196717,0.0003549492,0.0002232155,0.0009979936],"genre_scores_gemma":[0.0007629223,0.9948888,0.0001538174,0.0001232593,0.0001317691,0.002338633,0.0002605132,0.0003136412,0.001026633],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9740477,"threshold_uncertainty_score":0.9996443,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2419639748","doi":"10.1038/oncsis.2016.41","title":"PPAR-delta promotes survival of breast cancer cells in harsh metabolic conditions","year":2016,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Sunnybrook Health Science Centre; Toronto General Hospital; University of Toronto; Sunnybrook Hospital","funders":"National Natural Science Foundation of China; Canadian Institutes of Health Research; Leukemia and Lymphoma Society of Canada; Philipps-Universität Marburg; Leukemia and Lymphoma Society","keywords":"Breast cancer; Downregulation and upregulation; Peroxisome proliferator-activated receptor; Biology; Cancer research; Endocrinology; Cancer cell; Internal medicine; Cancer; Receptor; Medicine; Biochemistry","authors":[{"name":"Xinning Wang","is_ca":true},{"name":"G Wang","is_ca":true},{"name":"Yonghong Shi","is_ca":true},{"name":"Liankun Sun","is_ca":true},{"name":"Reginald M. Gorczynski","is_ca":true},{"name":"YJ Li","is_ca":true},{"name":"Zi‐jun Xu","is_ca":false},{"name":"David Spaner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01147707450891929,"gpt":0.2650121089424038,"spread":0.2535350344334845,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001258359,0.0001630683,0.0002426579,0.00008071365,0.00003435176,0.000007052922,0.0001911256,0.0001581875,0.0002827153],"category_scores_gemma":[0.0000296292,0.0001220507,0.0000924187,0.0001838961,0.0001085016,0.000008407309,0.00007590971,0.00003938823,0.00001591241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002568374,"about_ca_system_score_gemma":0.0001725325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001820443,"about_ca_topic_score_gemma":0.0002337248,"domain_scores_codex":[0.9989492,0.0000987408,0.0002430077,0.0003209284,0.0001322386,0.000255907],"domain_scores_gemma":[0.9993964,0.00001929177,0.000104401,0.0002803978,0.0001132992,0.00008619877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005313314,0.0001181561,0.04443114,0.00001203756,0.00008400474,0.000001090446,0.00001572803,0.000007722247,0.9516177,0.00002114938,0.0003557504,0.003282389],"study_design_scores_gemma":[0.0005829454,0.00004011375,0.0194195,0.00003326473,0.00002642413,0.00000484472,0.00001735026,0.000002331159,0.9744063,0.00001442907,0.005279117,0.0001733495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972681,0.0006871553,0.00005148645,0.0002855533,0.0002192363,0.0001565919,0.00116387,0.00001192239,0.0001561126],"genre_scores_gemma":[0.9981841,0.001032449,0.00009328742,0.00004735924,0.0001638056,0.00008430044,0.00004123241,0.00003142773,0.0003219731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02501164,"threshold_uncertainty_score":0.4977083,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046448384","doi":"10.1038/oncsis.2014.1","title":"Serum levels of mature microRNAs in DICER1-mutated pleuropulmonary blastoma","year":2014,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Congenital Diaphragmatic Hernia Studies","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Medical Research Council; Alex's Lemonade Stand Foundation for Childhood Cancer; Sparks; European Commission; TD Bank; Cancer Research UK","keywords":"microRNA; Pulmonary Blastoma; Biology; Genetics; Medicine; Gene; Internal medicine; Lung","authors":[{"name":"Matthew J. Murray","is_ca":false},{"name":"Shivani Bailey","is_ca":false},{"name":"Katie L. Raby","is_ca":false},{"name":"Harpreet K. Saini","is_ca":false},{"name":"Leanne de Kock","is_ca":true},{"name":"G.A. Amos Burke","is_ca":false},{"name":"William D. Foulkes","is_ca":true},{"name":"Anton J. Enright","is_ca":false},{"name":"Nicholas Coleman","is_ca":false},{"name":"Marc Tischkowitz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01539918833270781,"gpt":0.2616271374263983,"spread":0.2462279490936904,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002290097,0.0001940214,0.000525518,0.0001943287,0.00003185725,0.000005514625,0.0001135177,0.000111894,0.0002633213],"category_scores_gemma":[0.0002603518,0.0001691498,0.0001140047,0.0004097086,0.00008369249,0.00004154152,0.00009580071,0.0001257551,0.0001261774],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006356837,"about_ca_system_score_gemma":0.00006746123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006217839,"about_ca_topic_score_gemma":0.0001823725,"domain_scores_codex":[0.9986886,0.00009649243,0.000414119,0.0002616973,0.0002638684,0.0002751832],"domain_scores_gemma":[0.9991776,0.0001619465,0.0001090711,0.0003364209,0.0001107395,0.000104215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004181644,0.0004416011,0.2842453,0.0008030227,0.0002915856,0.0003176691,0.001280771,0.0000115911,0.4747508,0.00005165999,0.0007843943,0.2366035],"study_design_scores_gemma":[0.001278749,0.000191534,0.9637104,0.0002075176,0.0001219853,0.00008101054,0.0002034304,0.0002032463,0.02932656,0.00005544656,0.004450341,0.0001697486],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899881,0.0006229472,0.00003044419,0.0009123649,0.0001063292,0.0002603194,0.00007659608,0.0000554087,0.007947513],"genre_scores_gemma":[0.9974328,0.00003546353,0.0007395038,0.0003485121,0.00007343602,0.00001524762,0.000005853719,0.00004136562,0.001307815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6794651,"threshold_uncertainty_score":0.6897729,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971044822","doi":"10.1038/oncsis.2012.36","title":"Serum-stimulated cell cycle entry promotes ncOGT synthesis required for cyclin D expression","year":2012,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Université Lille 1 - Sciences et Technologies; Centre National de la Recherche Scientifique; Simon Fraser University; University of Washington; King's College London; Ligue Contre le Cancer; Université de Lille; Association pour la Recherche sur le Cancer","keywords":"Cyclin D1; HeLa; Cell cycle; MAPK/ERK pathway; Cell biology; Intracellular; Cyclin; Cell growth; Biology; Cell; Cyclin A; Cyclin D; Molecular biology; Chemistry; Kinase; Biochemistry","authors":[{"name":"Stéphanie Olivier‐Van Stichelen","is_ca":false},{"name":"Ludivine Drougat","is_ca":false},{"name":"Vanessa Dehennaut","is_ca":false},{"name":"Ikram El Yazidi‐Belkoura","is_ca":false},{"name":"C. Guinez","is_ca":false},{"name":"A-M Mir","is_ca":false},{"name":"J.-C. Michalski","is_ca":false},{"name":"Tony Lefebvre","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02009691009484039,"gpt":0.2947362825961939,"spread":0.2746393725013536,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003791199,0.000200587,0.000187591,0.00007136221,0.000186633,0.00003095431,0.0002211048,0.0002747946,0.0002086965],"category_scores_gemma":[0.0003514509,0.0001821382,0.0001619499,0.0001272773,0.00004597777,0.00001386468,0.0001253435,0.00005969876,0.00009239846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002750948,"about_ca_system_score_gemma":0.00007027833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001740117,"about_ca_topic_score_gemma":0.000005947652,"domain_scores_codex":[0.9985006,0.0001163556,0.0002599018,0.000362973,0.0002203255,0.0005397802],"domain_scores_gemma":[0.9990228,0.00007326289,0.00009738286,0.0004402632,0.0001354661,0.0002307841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000234066,0.0002507744,0.004384433,0.00006826183,0.00002696855,0.000001028827,0.00004426593,0.00005591228,0.9808259,0.000005160329,0.001855407,0.01224784],"study_design_scores_gemma":[0.0006550643,0.0001280283,0.001802481,0.00002584738,0.00002617422,0.000004264533,0.00004422014,0.0003446436,0.9626012,0.00001714278,0.03411424,0.0002367096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933001,0.001023109,0.002065307,0.0001579414,0.0001634559,0.0006894703,0.00009818652,0.00004053804,0.002461855],"genre_scores_gemma":[0.9921982,0.0001162718,0.003755902,0.00008846941,0.0004446618,0.0002782498,0.0001251253,0.0000540346,0.002939032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03225883,"threshold_uncertainty_score":0.7427379,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2183272660","doi":"10.1038/oncsis.2015.34","title":"Multiple region whole-exome sequencing reveals dramatically evolving intratumor genomic heterogeneity in esophageal squamous cell carcinoma","year":2015,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Natural Science Foundation of China","keywords":"Biology; Exome sequencing; Genetic heterogeneity; Somatic evolution in cancer; Comparative genomic hybridization; Exome; Genetics; Nonsynonymous substitution; Sanger sequencing; Copy-number variation; Genomics; Cancer; Computational biology; Gene; Mutation; Genome; Phenotype","authors":[{"name":"Wei Cao","is_ca":false},{"name":"Wei Wu","is_ca":true},{"name":"Ming Yan","is_ca":false},{"name":"Fei Tian","is_ca":false},{"name":"Chao Ma","is_ca":false},{"name":"Q Zhang","is_ca":false},{"name":"X Li","is_ca":false},{"name":"Z Liu","is_ca":false},{"name":"Jianying Gu","is_ca":false},{"name":"Fred G. Biddle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04970348814612267,"gpt":0.2987155862839877,"spread":0.249012098137865,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005751721,0.0003391932,0.0006266722,0.0002805755,0.0001009979,0.00006230381,0.0002167678,0.0001616415,0.00003215141],"category_scores_gemma":[0.0003886091,0.0003056252,0.0001739599,0.0004081645,0.000092014,0.0001730607,0.0001335237,0.0002939914,0.0001917015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002569315,"about_ca_system_score_gemma":0.0009559828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001169187,"about_ca_topic_score_gemma":0.0004185791,"domain_scores_codex":[0.9971712,0.0002353834,0.0005648119,0.000621224,0.0006142755,0.00079308],"domain_scores_gemma":[0.9979916,0.000176664,0.0001339021,0.0006303964,0.0002252937,0.0008420973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008177698,0.0005495931,0.9519114,0.0004589488,0.00004254139,0.007912691,0.0009562629,0.0002844342,0.03367696,0.00001148555,0.0008318347,0.002546007],"study_design_scores_gemma":[0.01435752,0.002511233,0.8991639,0.0002123639,0.0002412306,0.000911614,0.0006916823,0.00574423,0.07517836,0.000237801,0.00009235374,0.0006577002],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883608,0.009039672,0.0001806446,0.0003856445,0.0001142554,0.0009443469,0.00002199179,0.00008381745,0.0008687814],"genre_scores_gemma":[0.9966264,0.00001888539,0.001875002,0.0002907565,0.0002598506,0.0001510715,0.00005603119,0.00007195017,0.0006500214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05274756,"threshold_uncertainty_score":0.9999396,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2605587330","doi":"10.1038/oncsis.2017.22","title":"Initial sites of hepadnavirus integration into host genome in human hepatocytes and in the woodchuck model of hepatitis B-associated hepatocellular carcinoma","year":2017,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. John’s Health Sciences Centre; Newfoundland and Labrador Centre for Applied Health Research; Health Sciences Centre; Memorial University of Newfoundland","funders":"Canadian Institutes of Health Research","keywords":"Woodchuck hepatitis virus; Hepatitis B virus; Biology; Virology; Virus; Hepadnaviridae; Hepatocellular carcinoma; Hepatitis B virus PRE beta; cccDNA; Hepatitis B virus DNA polymerase; Genetics; HBsAg","authors":[{"name":"Ranjit Chauhan","is_ca":true},{"name":"Norma D. Churchill","is_ca":true},{"name":"Patricia M. Mulrooney‐Cousins","is_ca":true},{"name":"Tomasz I. Michalak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06023920818438119,"gpt":0.3180862397622142,"spread":0.2578470315778331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006788564,0.0002478491,0.0007618813,0.0002686077,0.0002204752,0.00003039004,0.0002856482,0.0001859619,0.00001521529],"category_scores_gemma":[0.0005966501,0.0002035779,0.0001124501,0.0001851546,0.0003705373,0.000179634,0.0001632457,0.0002013761,0.0000023899],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001816346,"about_ca_system_score_gemma":0.0001319224,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.07352085,"about_ca_topic_score_gemma":0.08933992,"domain_scores_codex":[0.9981063,0.0001680634,0.000704516,0.0003222341,0.0004203628,0.0002785361],"domain_scores_gemma":[0.9985735,0.0001199158,0.0004288386,0.0005915151,0.0002248086,0.00006145216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007919561,0.0002278567,0.7925957,0.0001020549,0.00004291155,0.00005456469,0.004254544,0.000005293947,0.2018319,0.00008845889,0.000008537146,0.000709055],"study_design_scores_gemma":[0.001430339,0.0003170403,0.9228231,0.0002096337,0.000107212,0.000004481791,0.0002277355,0.008113214,0.06622788,0.0003555946,0.000008219542,0.0001755752],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972318,0.0009565502,0.00003312241,0.0002167039,0.00003190158,0.0006463421,0.00008712159,0.00001392174,0.0007825114],"genre_scores_gemma":[0.9985972,0.0007172053,0.0003426302,0.00009122422,0.00004134238,0.00009331763,0.00005294438,0.00002769395,0.00003641931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.135604,"threshold_uncertainty_score":0.9326487,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016411082","doi":"10.1038/oncsis.2015.7","title":"Prediction of recurrence-free survival using a protein expression-based risk classifier for head and neck cancer","year":2015,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Windsor; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research; Council of Scientific and Industrial Research, India; Department of Biotechnology, Ministry of Science and Technology, India","keywords":"Head and neck cancer; Oncology; Head and neck; Protein expression; Classifier (UML); Medicine; Internal medicine; Artificial intelligence; Computer science; Cancer; Surgery; Biology; Genetics; Gene","authors":[{"name":"Shyam S. Chauhan","is_ca":false},{"name":"Jasbir Kaur","is_ca":true},{"name":"Manish Kumar","is_ca":false},{"name":"A. Matta","is_ca":true},{"name":"Gunjan Srivastava","is_ca":true},{"name":"Akram Alyass","is_ca":true},{"name":"Jad Assi","is_ca":true},{"name":"Iona Leong","is_ca":true},{"name":"Colleen P. MacMillan","is_ca":true},{"name":"Ian Witterick","is_ca":true},{"name":"Terence J. Colgan","is_ca":true},{"name":"N. K. Shukla","is_ca":false},{"name":"Alok Thakar","is_ca":false},{"name":"Mehar Chand Sharma","is_ca":false},{"name":"K. W. Michael Siu","is_ca":true},{"name":"Paul G. Walfish","is_ca":true},{"name":"Ranju Ralhan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1547002456295401,"gpt":0.3557018739231172,"spread":0.2010016282935771,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000278282,0.0001237971,0.0003643222,0.00006509638,0.00008575118,0.000005432443,0.00005073116,0.0000839467,0.00001132467],"category_scores_gemma":[0.0003718236,0.00009795182,0.00006389483,0.000138405,0.00007467409,0.0000464258,0.00003448918,0.00006185568,3.855991e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001116013,"about_ca_system_score_gemma":0.0004683048,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007460426,"about_ca_topic_score_gemma":0.000219637,"domain_scores_codex":[0.9990491,0.00005260369,0.0002313384,0.0002357954,0.0002521522,0.0001790621],"domain_scores_gemma":[0.9991639,0.0000674948,0.000127626,0.0002317983,0.0002585113,0.000150731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003840144,0.0004091166,0.75318,0.001009748,0.0002019579,0.000005827718,0.001060635,0.0001061615,0.1534435,0.0000186811,0.007285656,0.0794386],"study_design_scores_gemma":[0.04135283,0.0066229,0.2997723,0.008585603,0.001599591,0.00001289933,0.001670449,0.0295807,0.5421767,0.0005861387,0.06713761,0.0009022757],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936563,0.002799125,0.001389487,0.0004067249,0.0003043431,0.0007064051,0.0003777432,0.00002920236,0.0003306737],"genre_scores_gemma":[0.9897771,0.0002103429,0.009032306,0.00005250225,0.0003603867,0.0003288678,0.00001150745,0.0000269615,0.000199972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4534077,"threshold_uncertainty_score":0.3994359,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2884432576","doi":"10.1038/s41389-018-0063-5","title":"A dual role of miR-22 modulated by RelA/p65 in resensitizing fulvestrant-resistant breast cancer cells to fulvestrant by targeting FOXP1 and HDAC4 and constitutive acetylation of p53 at Lys382","year":2018,"lang":"en","type":"article","venue":"Oncogenesis","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Lethbridge","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Fulvestrant; Acetylation; Cancer research; Breast cancer; Medicine; Cancer; Estrogen receptor; Chemistry; Internal medicine; Gene; Biochemistry","authors":[{"name":"Bo Wang","is_ca":true},{"name":"Dongping Li","is_ca":true},{"name":"Jody Filkowski","is_ca":true},{"name":"Rocio Rodriguez‐Juarez","is_ca":true},{"name":"Quinn Storozynsky","is_ca":true},{"name":"Megan Malach","is_ca":true},{"name":"Emily Carpenter","is_ca":true},{"name":"Olga Kovalchuk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004060373009132766,"gpt":0.2279263198684731,"spread":0.2238659468593403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001854197,0.0001698511,0.0002405307,0.00006590804,0.00007157456,0.00001028655,0.00005653392,0.0001582111,0.00001776772],"category_scores_gemma":[0.00002901296,0.0001782804,0.0000405729,0.0001480071,0.0002509047,0.00001075828,0.00009003731,0.0000356514,7.72363e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004961979,"about_ca_system_score_gemma":0.00008274815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006112425,"about_ca_topic_score_gemma":0.0003118025,"domain_scores_codex":[0.9987926,0.00008631036,0.0003572648,0.0004030115,0.000143046,0.0002177578],"domain_scores_gemma":[0.9993455,0.00002112717,0.0001818598,0.0001738385,0.0001635993,0.0001140595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000638689,0.00004841662,0.00526651,0.00005450283,0.00006015105,0.000002291957,0.0002012866,0.00007330807,0.9920009,0.000005129384,0.0005779368,0.001070901],"study_design_scores_gemma":[0.0007078552,0.0001342549,0.02211051,0.00009398587,0.00005246668,0.00001233301,0.0001769053,0.0002952742,0.975657,0.000009509621,0.0005651296,0.0001847818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954997,0.003084411,0.00008393697,0.00008572304,0.00003196878,0.0002900907,0.0008346431,0.000005710129,0.00008376336],"genre_scores_gemma":[0.9989936,0.000216236,0.0005095972,0.00002365559,0.00004573236,0.00001084144,0.0001420124,0.00002059492,0.00003777792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.016844,"threshold_uncertainty_score":0.7270063,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2616420862","doi":"10.1038/oncsis.2017.30","title":"Epigenetic pathway inhibitors represent potential drugs for treating pancreatic and bronchial neuroendocrine tumors","year":2017,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Neuroendocrine Tumor Research Advances","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Medical Research Council; Ministero dello Sviluppo Economico; Genome Canada; Fundação de Amparo à Pesquisa do Estado de São Paulo; Ontario Ministry of Economic Development and Innovation; Novartis Pharma; Ontario Genomics Institute; European Federation of Pharmaceutical Industries and Associations; Wellcome Trust; National Institute for Health and Care Research; Ontario Genomics; Pfizer","keywords":"Epigenetics; Cancer research; Biology; Histone; Histone methyltransferase; Propidium iodide; DNA methylation; Apoptosis; Bromodomain; Cell cycle; Cancer epigenetics; Cyclin D1; Molecular biology; Genetics; Gene expression; Programmed cell death; Gene","authors":[{"name":"Kate E Lines","is_ca":false},{"name":"Mark Stevenson","is_ca":false},{"name":"P. Filippakopoulos","is_ca":false},{"name":"Susanne Müller","is_ca":false},{"name":"Helen Lockstone","is_ca":false},{"name":"Benjamin Wright","is_ca":false},{"name":"Simona Grozinsky‐Glasberg","is_ca":false},{"name":"Ashley Grossman","is_ca":false},{"name":"Stefan Knapp","is_ca":false},{"name":"David Buck","is_ca":false},{"name":"C. Bountra","is_ca":false},{"name":"Rajesh V. Thakker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0186299800539821,"gpt":0.3146660545490026,"spread":0.2960360744950205,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001348516,0.0003165232,0.0006079637,0.0001586043,0.0007134776,0.0001581562,0.000267106,0.00001160383,0.00004206082],"category_scores_gemma":[0.001099196,0.0002781132,0.0002128467,0.00007871279,0.0002836949,0.000192229,0.0002987949,0.0001616579,0.00001343131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006306297,"about_ca_system_score_gemma":0.000158928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004287832,"about_ca_topic_score_gemma":0.00004944409,"domain_scores_codex":[0.9974846,0.00008761467,0.0004544026,0.0007396148,0.0005014888,0.0007322644],"domain_scores_gemma":[0.9979793,0.0002074778,0.0002710544,0.0009824543,0.0001184171,0.0004413065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003236782,0.0007416564,0.1813841,0.00150681,0.0003205445,0.01882481,0.0002053927,0.00008238336,0.4090234,0.000146727,0.001397103,0.3831303],"study_design_scores_gemma":[0.01151257,0.003371022,0.1606064,0.0004909293,0.0005954958,0.007787502,0.0004489849,0.001596887,0.7997805,0.0007024349,0.01227262,0.0008346091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938806,0.0007168031,0.00004942486,0.002440947,0.0002785318,0.001266445,0.00004190557,0.00009210905,0.001233276],"genre_scores_gemma":[0.9932692,0.0003421676,0.001440747,0.0001128814,0.0008114328,0.000253042,0.00002039431,0.00009026393,0.003659881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3907571,"threshold_uncertainty_score":0.9999671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2804089231","doi":"10.1038/s41389-018-0050-x","title":"Dysregulation of the MiR-449b target TGFBI alters the TGFβ pathway to induce cisplatin resistance in nasopharyngeal carcinoma","year":2018,"lang":"en","type":"article","venue":"Oncogenesis","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"Agence Nationale de la Recherche; Ontario Ministry of Health and Long-Term Care","keywords":"TGFBI; Cancer research; Nasopharyngeal carcinoma; Cisplatin; Transforming growth factor; microRNA; Downregulation and upregulation; Protein kinase B; Small hairpin RNA; Medicine; Biology; Signal transduction; Apoptosis; Internal medicine; Gene knockdown; Gene; Cell biology; Chemotherapy; Genetics; Radiation therapy","authors":[{"name":"Pierre-Antoine Bissey","is_ca":true},{"name":"Jacqueline H. Law","is_ca":true},{"name":"Jeff Bruce","is_ca":true},{"name":"Wei Shi","is_ca":true},{"name":"Aline Renoult","is_ca":false},{"name":"Melvin L.K. Chua","is_ca":true},{"name":"Kenneth W. Yip","is_ca":true},{"name":"Fei‐Fei Liu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01158874085880774,"gpt":0.2452201439227099,"spread":0.2336314030639022,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002460116,0.0001520128,0.0001403072,0.00004153619,0.0001244604,0.0000144045,0.0004510925,0.0001049865,0.00002542152],"category_scores_gemma":[0.0001562616,0.0001068254,0.00009110167,0.0002685044,0.0001522059,0.000004634126,0.000156533,0.00005108742,0.000009461052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003678815,"about_ca_system_score_gemma":0.0001763157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005997045,"about_ca_topic_score_gemma":0.0006824392,"domain_scores_codex":[0.9987785,0.0001606374,0.0002768452,0.0003291216,0.0002203021,0.000234621],"domain_scores_gemma":[0.9990212,0.00003654888,0.0001330364,0.0006303379,0.0001136152,0.00006522288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002370807,0.00005878574,0.04417622,0.00002192331,0.00002369994,0.00000180494,0.000362903,0.0001249132,0.9519598,0.00005540505,0.001974728,0.001002775],"study_design_scores_gemma":[0.0002504727,0.00007374474,0.2204378,0.00003025949,0.00001238177,0.000001021223,0.00005191203,0.00002012922,0.7674382,0.00004962294,0.01151564,0.0001188128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973113,0.0008952652,0.000111582,0.00035757,0.0001995284,0.0002918104,0.00004774227,0.000007452455,0.0007777534],"genre_scores_gemma":[0.9978528,0.000003269539,0.0008004673,0.0004223118,0.0002952477,0.00004342357,0.00002570609,0.00002601806,0.0005307581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1845215,"threshold_uncertainty_score":0.4356215,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3214607380","doi":"10.1038/s41389-021-00370-7","title":"Emerging role of G9a in cancer stemness and promises as a therapeutic target","year":2021,"lang":"en","type":"review","venue":"Oncogenesis","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Ontario Ministry of Research, Innovation and Science; Government of Canada; Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Cancer Research Society","keywords":"Cancer; Medicine; Cancer research; Internal medicine","authors":[{"name":"Joshua R. Haebe","is_ca":true},{"name":"Christopher J. Bergin","is_ca":true},{"name":"Tamara Sandouka","is_ca":true},{"name":"Yannick D. Benoit","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02972598532435625,"gpt":0.3619325085937819,"spread":0.3322065232694257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001778097,0.0002281434,0.0007294877,0.00008526714,0.00002755354,0.00001423248,0.0001210665,0.0002736873,0.00003482363],"category_scores_gemma":[0.00003035247,0.000203601,0.0001735209,0.0001813704,0.0000324529,0.000001742435,0.00009722407,0.00006410623,9.251356e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000210564,"about_ca_system_score_gemma":0.0003673626,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001343995,"about_ca_topic_score_gemma":0.00008865238,"domain_scores_codex":[0.9987975,0.0001683166,0.0003734383,0.0003880029,0.0001095441,0.0001632284],"domain_scores_gemma":[0.9993762,0.00002330511,0.0002221373,0.0002621009,0.00007014185,0.0000461266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005257765,0.00004537676,0.0006866012,0.002102125,0.0001427163,0.00000234415,0.00003593676,0.00001043623,0.01370331,0.00001562064,0.000003075182,0.9832472],"study_design_scores_gemma":[0.0001466714,0.00006602124,0.00006587607,0.001591156,0.0002536191,0.000003125786,0.00005014238,0.000005167645,0.02849144,0.00004206265,0.9690266,0.0002580859],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01321484,0.9860571,0.00002538938,0.000007452063,0.00007251909,0.0002984288,0.00003748145,0.000002712287,0.0002840995],"genre_scores_gemma":[0.00295291,0.9961799,0.0001726358,0.00001000506,0.0001065455,0.0001520872,0.0001293036,0.00004320815,0.0002533649],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9829891,"threshold_uncertainty_score":0.8302609,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2310953578","doi":"10.1038/oncsis.2016.17","title":"Kaiso depletion attenuates transforming growth factor-β signaling and metastatic activity of triple-negative breast cancer cells","year":2016,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; McMaster University","funders":"Canadian Institutes of Health Research; Vanderbilt University","keywords":"Cancer research; Metastasis; Metastatic breast cancer; Epithelial–mesenchymal transition; Gene silencing; Transforming growth factor; Triple-negative breast cancer; Carcinogenesis; Breast cancer; Transcription factor; Signal transduction; Cancer; Biology; Medicine; Internal medicine; Cell biology","authors":[{"name":"Blessing Bassey‐Archibong","is_ca":true},{"name":"Jacek M. Kwiecień","is_ca":true},{"name":"Snezana Milosavljevic","is_ca":true},{"name":"Robin Hallett","is_ca":true},{"name":"L Rayner","is_ca":true},{"name":"Matthias Erb","is_ca":true},{"name":"Catherine Crawford-Brown","is_ca":true},{"name":"Kyle B. Stephenson","is_ca":true},{"name":"Bédard Pa","is_ca":true},{"name":"John A. Hassell","is_ca":true},{"name":"Juliet M. Daniel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02727152823113934,"gpt":0.2848053893717047,"spread":0.2575338611405654,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001690999,0.0001931914,0.0004988922,0.0001226131,0.00006924613,0.000008624639,0.000048421,0.00005098927,0.0003370799],"category_scores_gemma":[0.0000321462,0.0001271369,0.0001493004,0.0002082914,0.0001130284,0.0001628227,0.00001638111,0.00005563966,0.000004105727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001201994,"about_ca_system_score_gemma":0.0001419997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002121972,"about_ca_topic_score_gemma":0.000248877,"domain_scores_codex":[0.9988747,0.00006830358,0.0002571235,0.0002962808,0.0002606394,0.0002430045],"domain_scores_gemma":[0.9991663,0.0002162487,0.0001593292,0.0001358257,0.0001716028,0.0001506655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003888488,0.00007483921,0.006853512,0.0002300423,0.0001949416,0.000005518168,0.0003305407,8.063888e-7,0.7885704,0.000006279672,0.00003005056,0.2033142],"study_design_scores_gemma":[0.002249443,0.0001346114,0.01990814,0.0002977762,0.0005627342,0.00002492734,0.0001475397,0.00001217881,0.9762585,0.00002695559,0.0002154415,0.0001617798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937126,0.0005959045,0.003534211,0.0009070042,0.0001346139,0.0003749653,0.0006328533,0.00002505226,0.00008278152],"genre_scores_gemma":[0.9968911,0.001889675,0.0008015434,0.00006109893,0.0000826357,0.00004060188,0.000002362577,0.0000306092,0.0002003523],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2031524,"threshold_uncertainty_score":0.5184492,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995930415","doi":"10.1038/oncsis.2012.11","title":"Constitutive activation of breast tumor kinase accelerates cell migration and tumor growth in vivo","year":2012,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Melanoma and MAPK Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Cancer research; Tyrosine kinase; Kinase; Cell growth; Metastasis; Proto-oncogene tyrosine-protein kinase Src; Chemistry; Cancer; Biology; Signal transduction; Internal medicine; Medicine; Cell biology; Biochemistry","authors":[{"name":"Sayem Miah","is_ca":true},{"name":"Alexandre Martin","is_ca":true},{"name":"Kiven Erique Lukong","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009962973943617767,"gpt":0.2188371606717613,"spread":0.2088741867281436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009894777,0.00009817192,0.0001118754,0.0000488909,0.00002985504,0.000006956522,0.00004701667,0.00005087977,0.00001752333],"category_scores_gemma":[0.00002827686,0.00009259796,0.0000278226,0.00007542626,0.00005208369,0.00001234714,0.00003465265,0.00002484335,0.000002171608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001125531,"about_ca_system_score_gemma":0.00005286191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001971433,"about_ca_topic_score_gemma":0.00005196058,"domain_scores_codex":[0.999468,0.00003981734,0.0001390316,0.0001488034,0.00005990512,0.0001444458],"domain_scores_gemma":[0.9996937,0.00001277872,0.00008311761,0.00009266416,0.00005919994,0.00005856107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006053666,0.00009305726,0.1311338,0.00003206026,0.000006206272,0.000001298136,0.00006602808,0.000001565294,0.8680552,0.0001244855,0.0001129545,0.000312757],"study_design_scores_gemma":[0.000340466,0.00007606579,0.04690201,0.0000134739,0.00001103927,0.00001924911,0.0001229835,0.00001029638,0.9515537,0.00001059773,0.0008385101,0.00010163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974831,0.000296018,0.0001337769,0.00002724461,0.00005535789,0.0001238327,0.00004951655,0.000004147509,0.00182702],"genre_scores_gemma":[0.9993554,0.00004781588,0.0002930416,0.0000688741,0.000106659,0.00001977972,0.0000365423,0.000008632031,0.0000632478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08423182,"threshold_uncertainty_score":0.3776035,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2027102691","doi":"10.1038/oncsis.2014.30","title":"Lyn tyrosine kinase regulates androgen receptor expression and activity in castrate-resistant prostate cancer","year":2014,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Michael Smith Health Research BC","keywords":"LYN; Androgen receptor; Prostate cancer; Cancer research; Tyrosine kinase; LNCaP; Proto-oncogene tyrosine-protein kinase Src; Downregulation and upregulation; Receptor tyrosine kinase; Kinase; Chemistry; Carcinogenesis; Cell biology; Signal transduction; Biology; Internal medicine; Medicine; Cancer; Biochemistry; Gene","authors":[{"name":"Anousheh Zardan","is_ca":true},{"name":"Ka Mun Nip","is_ca":true},{"name":"Daksh Thaper","is_ca":true},{"name":"Paul Toren","is_ca":true},{"name":"Sepideh Vahid","is_ca":true},{"name":"Eliana Beraldi","is_ca":true},{"name":"Ladan Fazli","is_ca":true},{"name":"François Lamoureux","is_ca":true},{"name":"Kilian M. Gust","is_ca":true},{"name":"Michael Cox","is_ca":true},{"name":"Jennifer L. Bishop","is_ca":true},{"name":"Amina Zoubeidi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0216318519662704,"gpt":0.3062238376102353,"spread":0.2845919856439649,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002408178,0.0001908931,0.0003316574,0.0001296392,0.00009845725,0.00003032747,0.00005326999,0.00009897192,0.0001187862],"category_scores_gemma":[0.0000372191,0.0001391494,0.00004701126,0.0002489918,0.0001087678,0.0001086738,0.00005721268,0.0001096591,0.00001023817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001973228,"about_ca_system_score_gemma":0.0001561265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007616784,"about_ca_topic_score_gemma":0.0002654305,"domain_scores_codex":[0.9987163,0.00009675149,0.0001750596,0.0003989237,0.0002498095,0.0003631885],"domain_scores_gemma":[0.999339,0.00005592887,0.00006443894,0.0002446119,0.00007816827,0.0002178027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002304547,0.0001789384,0.08013887,0.0001922679,0.00003039716,0.0000487154,0.0001956364,0.000005909294,0.8664677,0.000004742841,0.0004638677,0.04996841],"study_design_scores_gemma":[0.003471232,0.0004146186,0.1023711,0.0004101417,0.00004722776,0.000007901401,0.00006161398,0.0001687803,0.8873091,0.00002628649,0.00553952,0.0001725102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935216,0.004078811,0.000004536481,0.001341836,0.00007033713,0.0005198105,0.00005588137,0.00003841645,0.0003688216],"genre_scores_gemma":[0.99445,0.002263183,0.0002862743,0.00004981649,0.0001034463,0.0001607184,0.00003030473,0.00003237132,0.002623913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0497959,"threshold_uncertainty_score":0.5674348,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2808091516","doi":"10.1038/s41389-018-0058-2","title":"Neutrophil TLR4 and PKR are targets of breast cancer cell glycosaminoglycans and effectors of glycosaminoglycan-induced APRIL secretion","year":2018,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Lausanne; Cure Brain Cancer Foundation; Universities Space Research Association","keywords":"Heparan sulfate; Secretion; Tumor microenvironment; Glycosaminoglycan; Cancer cell; Cancer research; Cell biology; Chondroitin sulfate; Biology; Chemistry; Cancer; Internal medicine; Endocrinology; Medicine; Biochemistry","authors":[{"name":"Uilst Bat-Erdene","is_ca":true},{"name":"Éric Quan","is_ca":true},{"name":"Kelvin Y.K. Chan","is_ca":true},{"name":"Brianna-Marie Lee","is_ca":true},{"name":"Wejdan Matook","is_ca":true},{"name":"Ki‐Young Lee","is_ca":true},{"name":"Jesusa L. Rosales","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01630935895208097,"gpt":0.2840130135979626,"spread":0.2677036546458816,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002224201,0.0002667919,0.0006250446,0.0002074738,0.00008688481,0.0000116138,0.0001217029,0.0001951372,0.0003189146],"category_scores_gemma":[0.0000600817,0.0002335644,0.0001049922,0.000349469,0.0003735613,0.00007574699,0.0001560652,0.0001309714,0.000005656238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001325928,"about_ca_system_score_gemma":0.0001957103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002227619,"about_ca_topic_score_gemma":0.0004829358,"domain_scores_codex":[0.9981155,0.0001230691,0.0003631515,0.0004904933,0.000540365,0.0003674501],"domain_scores_gemma":[0.998402,0.000129843,0.0002579097,0.0004226475,0.0004574254,0.0003301893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009391909,0.0001692238,0.1053023,0.0007649264,0.00007444235,0.00002924205,0.0002123287,7.992239e-7,0.8784023,0.000008330217,0.0001923341,0.01390461],"study_design_scores_gemma":[0.001893323,0.0009051092,0.4250521,0.0002089752,0.0001793642,0.00007082028,0.0001766593,0.0002681391,0.5707015,0.000005499543,0.0003654673,0.0001729711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959573,0.002124503,0.00004885946,0.0004263415,0.000123969,0.0005173406,0.0001333337,0.00002581538,0.0006425757],"genre_scores_gemma":[0.997574,0.001331711,0.0003869832,0.00008527473,0.0002270118,0.00003071322,0.00001935792,0.00005386513,0.0002910242],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3197498,"threshold_uncertainty_score":0.952448,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2797744743","doi":"10.1038/s41389-021-00316-z","title":"Resistance to BET inhibitors in lung adenocarcinoma is mediated by casein kinase phosphorylation of BRD4","year":2021,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia Hospital; University of British Columbia; BC Cancer Agency","funders":"Michael Smith Health Research BC; Government of Canada; Canadian Institutes of Health Research; Cancer Research Society","keywords":"BRD4; Bromodomain; Gene knockdown; Cancer research; Epigenetics; Biology; Oncogene; Chromatin; Downregulation and upregulation; Kinase; Histone; Cell biology; Cancer; Cell culture; Genetics; Gene; Cell cycle","authors":[{"name":"Jack Calder","is_ca":true},{"name":"Amy Nagelberg","is_ca":true},{"name":"Jennifer Luu","is_ca":true},{"name":"Daniel Lu","is_ca":true},{"name":"William W. Lockwood","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006934044545964807,"gpt":0.2381323143803055,"spread":0.2311982698343407,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000148229,0.000135521,0.0001723621,0.00006708974,0.000035624,0.00001163728,0.0001063913,0.0001540285,0.00008934073],"category_scores_gemma":[0.0001493933,0.0001525122,0.00007097475,0.0003402257,0.00002785792,0.000006047068,0.00007116231,0.00004694799,0.00001291962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004799551,"about_ca_system_score_gemma":0.0001427981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000795487,"about_ca_topic_score_gemma":0.000364345,"domain_scores_codex":[0.9988486,0.00008009327,0.000333897,0.0003694434,0.0001857291,0.0001822257],"domain_scores_gemma":[0.9993272,0.00001310573,0.00009835161,0.0003189865,0.0001403861,0.0001018986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008387777,0.00007224126,0.02443708,0.00003233204,0.00001732843,0.00001556263,0.00009249459,0.000004564616,0.9229621,0.000009887105,0.0507394,0.001533123],"study_design_scores_gemma":[0.0004144709,0.00004965309,0.005470884,0.00003349264,0.000009619454,0.000001918259,0.000093742,0.00001276195,0.9201889,0.000004614329,0.07356213,0.0001578108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9873716,0.01042737,0.0001786154,0.0009520488,0.0001438413,0.0001864586,0.0001498589,0.000008417389,0.000581736],"genre_scores_gemma":[0.9959078,0.0002986266,0.0006099804,0.0005669864,0.0001229113,0.0000348425,0.0004128996,0.00002269513,0.002023235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02282273,"threshold_uncertainty_score":0.6219268,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3165507113","doi":"10.1038/s41389-021-00334-x","title":"MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5","year":2021,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Centre for Blood Research, University of British Columbia; Syöpäjärjestöt; Academy of Finland; Oulun Yliopisto; Medical Research Center Oulu; Helsingin Yliopisto","keywords":"Cell adhesion; Matrix metalloproteinase; Cancer research; Cell migration; Cell; Cleavage (geology); Motility; Cell biology; Biology; Biochemistry","authors":[{"name":"Krista Juurikka","is_ca":false},{"name":"Antoine Dufour","is_ca":true},{"name":"Kari P. Pehkonen","is_ca":false},{"name":"Barbara Mainoli","is_ca":true},{"name":"Priscila Campioni Rodrigues","is_ca":false},{"name":"Nestor Solis","is_ca":true},{"name":"Théo Klein","is_ca":true},{"name":"Pia Nyberg","is_ca":false},{"name":"Christopher M. Overall","is_ca":true},{"name":"Tuula Salo","is_ca":false},{"name":"Pirjo Åström","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006843257939286562,"gpt":0.208264683580374,"spread":0.2014214256410874,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000866241,0.0001701927,0.0002091467,0.00003645109,0.00007432538,0.00001771544,0.00009076665,0.0001785606,0.00002093184],"category_scores_gemma":[0.00004319384,0.0001701418,0.000106189,0.0000889657,0.00004427891,0.000008495366,0.0001292245,0.00004040567,0.000006933735],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009269853,"about_ca_system_score_gemma":0.00009340256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002908754,"about_ca_topic_score_gemma":0.00009981557,"domain_scores_codex":[0.9989719,0.0001049569,0.0002268238,0.0003835409,0.0001353847,0.0001773267],"domain_scores_gemma":[0.9993207,0.00001991698,0.0001220984,0.000316069,0.000123017,0.0000982393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004454536,0.0001668971,0.01105594,0.0000820183,0.0000145939,0.00002598269,0.00003932694,0.000001233587,0.9866615,0.000007619283,0.001043311,0.0008570636],"study_design_scores_gemma":[0.0004293989,0.0003558731,0.004754355,0.00002017609,0.00006681676,0.00002099808,0.0001852812,0.00001925835,0.9925053,0.0000289649,0.001417618,0.0001960047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940982,0.004503981,0.0002902421,0.00004647178,0.00007645107,0.0001414912,0.00004513504,0.000008764713,0.000789261],"genre_scores_gemma":[0.9975792,0.0007690657,0.0008173393,0.0001413859,0.0001758681,0.00001432095,0.0001804939,0.00002495813,0.0002974224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006301587,"threshold_uncertainty_score":0.6938182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3121035950","doi":"10.1038/s41389-020-00297-5","title":"Prolactin receptor-driven combined luminal and epithelial differentiation in breast cancer restricts plasticity, stemness, tumorigenesis and metastasis","year":2021,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Taif University; King Abdulaziz University; McGill University Health Centre; McGill University","keywords":"CD44; Cancer research; Cancer stem cell; Biology; Breast cancer; Carcinogenesis; Metastasis; Cancer; Cellular differentiation; Cancer cell; Stem cell; Epithelial–mesenchymal transition; Internal medicine; Cell; Cell biology; Medicine","authors":[{"name":"Anwar Shams","is_ca":true},{"name":"Najat Binothman","is_ca":true},{"name":"Julien Boudreault","is_ca":true},{"name":"Ni Wang","is_ca":true},{"name":"Fuad Shams","is_ca":false},{"name":"Dana Hamam","is_ca":true},{"name":"Jun Tian","is_ca":true},{"name":"Alaa Moamer","is_ca":true},{"name":"Meiou Dai","is_ca":true},{"name":"Jean‐Jacques Lebrun","is_ca":true},{"name":"Suhad Ali","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01782458468315918,"gpt":0.2674981421594499,"spread":0.2496735574762907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001497237,0.0002610763,0.0006206521,0.0001927575,0.000110181,0.00005565445,0.00005484569,0.0001074896,0.0002850504],"category_scores_gemma":[0.00006118415,0.0002399965,0.00008484865,0.0005112346,0.00007920646,0.0001141131,0.000107593,0.0001391457,0.000005538711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001821623,"about_ca_system_score_gemma":0.0003378322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009573828,"about_ca_topic_score_gemma":0.001016898,"domain_scores_codex":[0.9982387,0.0001496721,0.0003836272,0.0005518774,0.0003429831,0.0003331775],"domain_scores_gemma":[0.9991127,0.0001210071,0.0001452081,0.0001911156,0.0001869112,0.0002430076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003234483,0.0006555427,0.5522584,0.0007894453,0.0003608139,0.0002076647,0.0004328449,0.00001819188,0.3326614,0.00005798489,0.0005411822,0.108782],"study_design_scores_gemma":[0.003917268,0.000147581,0.8917983,0.0002794867,0.0007965264,0.0001889681,0.0003858692,0.0001500828,0.09948383,0.00001307073,0.002534638,0.0003043901],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947832,0.001778756,0.00005964597,0.00221247,0.0003255644,0.0003456732,0.0003869293,0.00003235081,0.0000753952],"genre_scores_gemma":[0.9923699,0.005884061,0.0007191143,0.0001727068,0.0002966618,0.000109542,0.00005411902,0.00004211932,0.000351782],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3395399,"threshold_uncertainty_score":0.9786772,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071964414","doi":"10.1038/oncsis.2012.4","title":"Regulation of subcellular distribution and oncogenic potential of nucleophosmin by plakoglobin","year":2012,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Wnt/β-catenin signaling in development and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Killam Trusts; University of Alberta; Alberta Cancer Foundation; Cancer Research Institute","keywords":"Nucleophosmin; Plakoglobin; Carcinogenesis; Biology; Cytoplasm; Cell biology; Catenin; Cancer research; Subcellular localization; Molecular biology; Signal transduction; Cancer; Wnt signaling pathway; Genetics","authors":[{"name":"Lawrence Lam","is_ca":true},{"name":"Zackie Aktary","is_ca":true},{"name":"Mena Bishay","is_ca":true},{"name":"Carolin Werkman","is_ca":true},{"name":"CY Kuo","is_ca":true},{"name":"Michelle Heacock","is_ca":true},{"name":"Nutan Srivastava","is_ca":true},{"name":"J. Mackey","is_ca":true},{"name":"Manijeh Pasdar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004770187212750567,"gpt":0.2063433627722157,"spread":0.2015731755594651,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001861193,0.00009729273,0.0001328432,0.00001847957,0.00003348839,0.000003600427,0.00007333047,0.0001240168,0.00003955387],"category_scores_gemma":[0.00001612036,0.00009774645,0.00006027833,0.00007496707,0.00007501708,0.000005896358,0.00005007039,0.00002086274,0.000002004378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001551138,"about_ca_system_score_gemma":0.0000358996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002239173,"about_ca_topic_score_gemma":0.000001034503,"domain_scores_codex":[0.9993228,0.00003397376,0.0002167394,0.0001441262,0.0001299952,0.0001524018],"domain_scores_gemma":[0.9995996,0.000005503261,0.0001364251,0.0001341372,0.00006959152,0.00005479435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008666229,0.00005361945,0.0150983,0.00002436955,0.0000462273,1.009094e-7,0.00002746741,0.000009311822,0.9786185,0.0000253618,0.002734886,0.003275166],"study_design_scores_gemma":[0.0003286057,0.00007437776,0.0291564,0.000009932645,0.00004853038,0.000004273786,0.00002623369,0.00001577253,0.9613511,0.00001533428,0.008859197,0.0001102626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933326,0.004031841,0.002225673,0.0000214287,0.0001177117,0.00007950718,0.00008934211,0.000004344629,0.00009752177],"genre_scores_gemma":[0.9982174,0.0003006366,0.0003640737,0.00001168016,0.00009909283,0.000007005399,0.0005657369,0.00001230089,0.0004220549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01726745,"threshold_uncertainty_score":0.3985985,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037782111","doi":"10.1038/oncsis.2012.28","title":"Disruption of Abi1/Hssh3bp1 expression induces prostatic intraepithelial neoplasia in the conditional Abi1/Hssh3bp1 KO mice","year":2012,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"DOD Prostate Cancer Research Program; National Institute of Neurological Disorders and Stroke; National Institutes of Health; James N. Kirby Foundation; Memorial Sloan-Kettering Cancer Center; F. M. Kirby Foundation; U.S. Department of Defense","keywords":"LNCaP; Cancer research; Biology; Carcinogenesis; Prostate cancer; Downregulation and upregulation; Cancer; Gene; Genetics","authors":[{"name":"Xiufang Xiong","is_ca":false},{"name":"Anna Chorzalska","is_ca":false},{"name":"Patrycja M. Dubielecka","is_ca":false},{"name":"Julie R. White","is_ca":false},{"name":"Yogindra Vedvyas","is_ca":false},{"name":"Cyrus V. Hedvat","is_ca":false},{"name":"Adriana Haimovitz‐Friedman","is_ca":false},{"name":"Jason A. Koutcher","is_ca":false},{"name":"Jüri Reimand","is_ca":true},{"name":"Gary D. Bader","is_ca":true},{"name":"Janet A. Sawicki","is_ca":false},{"name":"Leszek Kotula","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01029858916818855,"gpt":0.266339654612373,"spread":0.2560410654441845,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003929351,0.00018449,0.0001754513,0.00008590941,0.0000855675,0.00001672606,0.0001946516,0.0002369744,0.00004749652],"category_scores_gemma":[0.00007361444,0.0001480561,0.00009984805,0.0002120178,0.0001099455,0.00002348993,0.00005635269,0.00009917694,0.00001567597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005132772,"about_ca_system_score_gemma":0.0001038202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005846545,"about_ca_topic_score_gemma":0.00007645546,"domain_scores_codex":[0.998583,0.0001995535,0.0003606562,0.0002694331,0.0002965619,0.0002908341],"domain_scores_gemma":[0.9992877,0.00005013709,0.0002164866,0.000296211,0.00008350134,0.00006595575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001592263,0.000188188,0.00921745,0.00004020471,0.00002982186,7.340504e-7,0.000589649,0.0003518083,0.9825519,0.00009217054,0.00078563,0.005993272],"study_design_scores_gemma":[0.0007623543,0.0001633327,0.1331612,0.00005540801,0.00005440143,0.00003909982,0.0003888041,0.00005726337,0.8602545,0.0001140441,0.004727828,0.0002217896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968652,0.001292278,0.0006014211,0.0002300465,0.0002736099,0.0003847436,0.00008349378,0.000009737711,0.0002594711],"genre_scores_gemma":[0.9980094,0.0001473246,0.0004268136,0.00009738513,0.0006040119,0.0001034404,0.0004886205,0.00002596738,0.00009698421],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1239437,"threshold_uncertainty_score":0.6037554,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3135677470","doi":"10.1038/s41389-021-00310-5","title":"TGFβ/cyclin D1/Smad-mediated inhibition of BMP4 promotes breast cancer stem cell self-renewal activity","year":2021,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"CD44; Cancer research; Cancer stem cell; SMAD; Biology; Stem cell; Cyclin D1; Bone morphogenetic protein 4; Triple-negative breast cancer; Population; Cancer; Transforming growth factor; Bone morphogenetic protein; Breast cancer; Cell; Cell cycle; Cell biology; Medicine; Genetics; Gene","authors":[{"name":"Gang Yan","is_ca":true},{"name":"Meiou Dai","is_ca":true},{"name":"Chenjing Zhang","is_ca":true},{"name":"Sophie Poulet","is_ca":true},{"name":"Alaa Moamer","is_ca":true},{"name":"Ni Wang","is_ca":true},{"name":"Julien Boudreault","is_ca":true},{"name":"Suhad Ali","is_ca":true},{"name":"Jean‐Jacques Lebrun","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01663302814003278,"gpt":0.2665056027530498,"spread":0.249872574613017,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001925466,0.0002288079,0.0005660831,0.0001010344,0.00006431522,0.00001510302,0.00005605979,0.0001522523,0.0007526609],"category_scores_gemma":[0.00001345561,0.0002113118,0.0002370309,0.0005539716,0.00005963445,0.00008408607,0.00006695385,0.0001298207,0.0000308553],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000239792,"about_ca_system_score_gemma":0.0009191915,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001468917,"about_ca_topic_score_gemma":0.0007761354,"domain_scores_codex":[0.998377,0.0001142769,0.0003428775,0.0004379635,0.0004122748,0.0003156147],"domain_scores_gemma":[0.9987518,0.00008235266,0.000220565,0.0003778476,0.0003437365,0.000223655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002816828,0.001068065,0.01558079,0.0006924223,0.000201877,0.000105478,0.0003278345,0.000007343113,0.9082169,0.000003232943,0.0007234475,0.07279092],"study_design_scores_gemma":[0.002065024,0.000120245,0.01950463,0.0002010684,0.0006276254,0.00007206824,0.0002008876,0.00004214731,0.9726794,0.000005868094,0.004265209,0.0002158062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939935,0.001898899,0.00005312469,0.001216296,0.0003900895,0.0003143529,0.0005621076,0.0000864428,0.00148515],"genre_scores_gemma":[0.9957084,0.001631067,0.0005713758,0.0001849267,0.0003332677,0.00006253296,0.00008115147,0.00004820892,0.001379066],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07257511,"threshold_uncertainty_score":0.8617045,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2901320358","doi":"10.1038/s41389-018-0100-4","title":"Pannexin 1 inhibits rhabdomyosarcoma progression through a mechanism independent of its canonical channel function","year":2018,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Connexins and lens biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Cancer Research Society","keywords":"Rhabdomyosarcoma; Ectopic expression; Myogenesis; Biology; Skeletal muscle; Multinucleate; In vivo; Cell biology; Embryonal rhabdomyosarcoma; Cell growth; Pannexin; Progenitor cell; Alveolar rhabdomyosarcoma; Cancer research; Anatomy; Cell culture; Pathology; Stem cell; Sarcoma; Medicine; Gap junction; Genetics; Intracellular","authors":[{"name":"Xiao Xiang","is_ca":true},{"name":"Stéphanie Langlois","is_ca":true},{"name":"Marie‐Eve St‐Pierre","is_ca":true},{"name":"Jessica Barré","is_ca":true},{"name":"David Grynspan","is_ca":true},{"name":"Bibianna Purgina","is_ca":true},{"name":"Kyle N. Cowan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01957088714419748,"gpt":0.2849639871619389,"spread":0.2653931000177414,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002203661,0.0001960229,0.0002305783,0.00005016545,0.0001079432,0.000008876608,0.0001845837,0.000351283,0.0001029229],"category_scores_gemma":[0.00006142692,0.0001674937,0.0001286537,0.0001367103,0.0001202871,0.000005981855,0.0002199721,0.00007186359,0.00003364997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001937489,"about_ca_system_score_gemma":0.0001469593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004416061,"about_ca_topic_score_gemma":0.0002099527,"domain_scores_codex":[0.9986371,0.00011282,0.0002999144,0.0004680554,0.0001705619,0.0003115319],"domain_scores_gemma":[0.9991557,0.00001226351,0.0001581807,0.0003548958,0.0002389694,0.00007998638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004955519,0.000156261,0.0003665673,0.00002447781,0.00007386222,0.000003301314,0.00007637266,0.000001137952,0.9862773,0.001026813,0.0004229661,0.01107538],"study_design_scores_gemma":[0.0007380274,0.002227253,0.001414408,0.00003558681,0.00004174802,0.0000329738,0.00008281614,0.00004189141,0.9644284,0.0003074428,0.03043158,0.0002179366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929243,0.001310934,0.003253306,0.000209097,0.0004260564,0.0002804976,0.00003204511,0.000021847,0.00154186],"genre_scores_gemma":[0.9978607,0.000251959,0.0004149582,0.0002991623,0.0006272121,0.00004963392,0.00007158412,0.00002797814,0.0003967875],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03000861,"threshold_uncertainty_score":0.6830195,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4367834560","doi":"10.1038/s41389-023-00467-1","title":"Retinoic acid receptor β modulates mechanosensing and invasion in pancreatic cancer cells via myosin light chain 2","year":2023,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cellular Mechanics and Interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Trinity College","funders":"UK Research and Innovation; “la Caixa” Foundation","keywords":"Pancreatic cancer; Stromal cell; Cancer research; Downregulation and upregulation; Retinoic acid; Cancer cell; Biology; Cancer; Myosin; Cell biology; Retinoic acid receptor; Chemistry; Endocrinology; Internal medicine; Medicine; Biochemistry","authors":[{"name":"Carlos Matellan","is_ca":false},{"name":"Dariusz Lachowski","is_ca":false},{"name":"Ernesto Cortés","is_ca":false},{"name":"Kai Ning Chiam","is_ca":false},{"name":"Aleksandar Krstić","is_ca":false},{"name":"Stephen D. Thorpe","is_ca":true},{"name":"Armando E. del Río Hernández","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01072000287355596,"gpt":0.2392072993718651,"spread":0.2284872964983091,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000182408,0.0001499279,0.0001633377,0.0001203108,0.00008676297,0.00002318174,0.00007538527,0.0001490118,0.00004838444],"category_scores_gemma":[0.00003503904,0.000149174,0.0000603418,0.0002548519,0.00001436859,0.000005237769,0.0001111318,0.00006446076,0.00003481485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000033343,"about_ca_system_score_gemma":0.00003439022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001902826,"about_ca_topic_score_gemma":0.0003035702,"domain_scores_codex":[0.9990315,0.00006634588,0.0001925849,0.0003755574,0.00009366183,0.0002402933],"domain_scores_gemma":[0.9995789,0.00001335562,0.00006374066,0.0002293805,0.00004245363,0.00007216242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002821083,0.00002194823,0.0004333183,0.00001976218,0.0000226042,0.000005728805,0.00007245572,0.00003140485,0.9929159,0.00000924382,0.0008581517,0.00558127],"study_design_scores_gemma":[0.0002232819,0.00008070064,0.0004420482,0.00005907626,0.00001958149,0.000005578562,0.00008230667,0.002204655,0.9854518,0.00004792633,0.01120263,0.0001804771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974585,0.001092538,0.000323422,0.0004649728,0.0003560262,0.0001604967,0.00001608926,0.00002389635,0.0001040486],"genre_scores_gemma":[0.9946081,0.003726747,0.0003110461,0.0001270979,0.0001600561,0.00003422282,0.00009384011,0.00003612498,0.000902752],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01034448,"threshold_uncertainty_score":0.6083138,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037179685","doi":"10.1038/oncsis.2014.45","title":"Kinome-wide screening of HER2+ breast cancer cells for molecules that mediate cell proliferation or sensitize cells to trastuzumab therapy","year":2014,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research","keywords":"Trastuzumab; Kinome; Cancer research; Cell growth; PI3K/AKT/mTOR pathway; Small interfering RNA; Breast cancer; Kinase; Signal transduction; Cell; Cell culture; Cancer; Medicine; Cell biology; Biology; Internal medicine; Transfection; Biochemistry; Genetics","authors":[{"name":"Valentina Lapin","is_ca":true},{"name":"Elize A. Shirdel","is_ca":true},{"name":"Xiangju Wei","is_ca":false},{"name":"Jeremy Mason","is_ca":false},{"name":"Igor Jurišica","is_ca":true},{"name":"Tak W. Mak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04106466693962878,"gpt":0.3146916047162688,"spread":0.27362693777664,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003395896,0.0002461293,0.0005022649,0.0001637544,0.0001151227,0.00002497624,0.0001398639,0.0001082558,0.0002456298],"category_scores_gemma":[0.00002505629,0.0001736214,0.0001956671,0.0002257189,0.00006336306,0.00005399894,0.00004446948,0.00009334736,0.00002533793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005627803,"about_ca_system_score_gemma":0.0002053829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006470567,"about_ca_topic_score_gemma":0.0001671098,"domain_scores_codex":[0.9982311,0.0001001294,0.0003271392,0.0003776329,0.0005252289,0.0004387858],"domain_scores_gemma":[0.9986548,0.0003787596,0.0001205451,0.0002480582,0.000300958,0.0002969207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005458773,0.0002554128,0.01095904,0.0004261357,0.0001424401,0.00001728044,0.0004922588,0.0003383099,0.8729382,0.00001007858,0.003228177,0.1057339],"study_design_scores_gemma":[0.001733969,0.0007845179,0.01919012,0.0001244781,0.00007134552,0.00001545794,0.0001089363,0.001643814,0.9603791,0.000009396905,0.01571498,0.0002239193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987386,0.0003621608,0.006941186,0.003162026,0.0001696607,0.001147715,0.000335471,0.00003561203,0.0004601169],"genre_scores_gemma":[0.9841079,0.0008342208,0.007820502,0.001801026,0.000553732,0.0001588301,0.00004844402,0.00006316203,0.004612161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.10551,"threshold_uncertainty_score":0.7080076,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991071027","doi":"10.1038/oncsis.2014.37","title":"Chaetocin antileukemia activity against chronic myelogenous leukemia cells is potentiated by bone marrow stromal factors and overcomes innate imatinib resistance","year":2014,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Chronic Myeloid Leukemia Treatments","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Saskatchewan Cancer Agency; University of Saskatchewan","funders":"","keywords":"Chronic myelogenous leukemia; Cancer research; Bone marrow; Stromal cell; Imatinib; Stem cell; Haematopoiesis; Imatinib mesylate; Biology; Immunology; Leukemia; Cell biology; Myeloid leukemia","authors":[{"name":"Luke Truitt","is_ca":true},{"name":"Catherine Hutchinson","is_ca":true},{"name":"John F. DeCoteau","is_ca":true},{"name":"C. Ronald Geyer","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00901262803584609,"gpt":0.2336495664022351,"spread":0.224636938366389,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003277753,0.000765491,0.001196086,0.0002165414,0.00034422,0.00007256283,0.0002363861,0.0004354476,0.0002411687],"category_scores_gemma":[0.00008604998,0.0006806182,0.0002764547,0.0004056832,0.0002544137,0.000242172,0.0001819305,0.0003901469,0.00007334936],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005324854,"about_ca_system_score_gemma":0.001113344,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007722442,"about_ca_topic_score_gemma":0.0002756812,"domain_scores_codex":[0.9964097,0.0001960479,0.0005999014,0.00109123,0.0007084218,0.0009946936],"domain_scores_gemma":[0.997753,0.000212267,0.000432791,0.0009810043,0.0001245063,0.0004964726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004361437,0.000232177,0.02873668,0.0005636948,0.0005380836,0.0001345848,0.0003993692,0.00001440012,0.9381392,0.000009117874,0.008546806,0.02224977],"study_design_scores_gemma":[0.01096068,0.0007520206,0.140467,0.0004537749,0.0007069652,0.00006650154,0.000105443,0.001723522,0.824033,0.00002154721,0.0196474,0.001062072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938621,0.002404996,0.0001038564,0.0003042994,0.0002322342,0.0008318702,0.0004609116,0.0002418542,0.001557878],"genre_scores_gemma":[0.992578,0.001444147,0.0006591873,0.0003917771,0.000188278,0.00005366009,0.00027024,0.0001487333,0.004265997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1141061,"threshold_uncertainty_score":0.9995645,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4378347748","doi":"10.1038/s41389-023-00475-1","title":"CDK4/6 inhibitors and the pRB-E2F1 axis suppress PVR and PD-L1 expression in triple-negative breast cancer","year":2023,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Advanced Breast Cancer Therapies","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"CIHR Skin Research Training Centre; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Cure Brain Cancer Foundation; Canadian Cancer Society; Government of Canada","keywords":"Triple-negative breast cancer; Cancer research; Breast cancer; Oncology; Medicine; Internal medicine; Cancer","authors":[{"name":"Mariusz Shrestha","is_ca":true},{"name":"Dong‐Yu Wang","is_ca":true},{"name":"Yaacov Ben‐David","is_ca":false},{"name":"Eldad Zacksenhaus","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01299193462303701,"gpt":0.2912556387195237,"spread":0.2782637040964867,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002788056,0.000226734,0.0004308052,0.0001684532,0.0001355683,0.00002386475,0.00008554607,0.00009849518,0.00009522474],"category_scores_gemma":[0.00008517003,0.0001476127,0.00005977645,0.0005424403,0.0003794984,0.0001594109,0.0001342228,0.0001610787,0.00000848669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001137255,"about_ca_system_score_gemma":0.00008395974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009071639,"about_ca_topic_score_gemma":0.0002844306,"domain_scores_codex":[0.9985895,0.0001256363,0.0002667349,0.0004100597,0.0002820507,0.0003260456],"domain_scores_gemma":[0.9991088,0.0003117408,0.0001019342,0.0002718625,0.00007574467,0.0001299146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.01794158,0.0002588162,0.2162995,0.0006830576,0.0004093543,0.0002245618,0.02159773,0.0001892125,0.1927627,0.0001337908,0.003002155,0.5464976],"study_design_scores_gemma":[0.02019441,0.0001333746,0.8700321,0.00114952,0.000184271,0.0002365611,0.004847263,0.0004820145,0.09371262,0.0008208037,0.00771637,0.0004907129],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894148,0.00366257,0.00001902134,0.005479235,0.0002315901,0.0007266867,0.000118211,0.00009415372,0.0002538002],"genre_scores_gemma":[0.9955271,0.001964341,0.0002277327,0.0003395939,0.0003142115,0.0003746739,0.000009989756,0.00004918607,0.00119317],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6537326,"threshold_uncertainty_score":0.6019472,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4388409498","doi":"10.1038/s41389-023-00497-9","title":"Combined in vitro/in vivo genome-wide CRISPR screens in triple negative breast cancer identify cancer stemness regulators in paclitaxel resistance","year":2023,"lang":"en","type":"article","venue":"Oncogenesis","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Paclitaxel; CRISPR; Cancer; Breast cancer; In vivo; Triple-negative breast cancer; Biology; Cancer research; In vitro; Genetics; Gene","authors":[{"name":"Gang Yan","is_ca":true},{"name":"Meiou Dai","is_ca":true},{"name":"Sophie Poulet","is_ca":true},{"name":"Ni Wang","is_ca":true},{"name":"Julien Boudreault","is_ca":true},{"name":"Girija Daliah","is_ca":true},{"name":"Suhad Ali","is_ca":true},{"name":"Jean‐Jacques Lebrun","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01025306557569314,"gpt":0.3091638174825899,"spread":0.2989107519068968,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004008023,0.0002710684,0.0004056441,0.0004114324,0.00003526769,0.00002129477,0.0002594184,0.0002128666,0.00003636454],"category_scores_gemma":[0.00007028208,0.0003057773,0.0000880817,0.001317197,0.00005328695,0.0000113698,0.0001233389,0.0001435374,0.000003580767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002589386,"about_ca_system_score_gemma":0.0001634653,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005747819,"about_ca_topic_score_gemma":0.09883088,"domain_scores_codex":[0.9979698,0.0001199113,0.0005141179,0.0006177578,0.0001994627,0.0005789246],"domain_scores_gemma":[0.9993467,0.00004717962,0.00008500615,0.0003725869,0.00005652898,0.00009199305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007300454,0.0001033645,0.3022021,0.0001337307,0.0000370687,0.00007992797,0.0004595003,0.009700118,0.6847183,0.000005527098,0.0006771685,0.001153174],"study_design_scores_gemma":[0.002009933,0.00002037668,0.7369853,0.0001424077,0.000009830755,0.000001095038,0.0005437227,0.0003202349,0.2588073,0.00003152372,0.0007917149,0.0003366068],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957592,0.002510672,0.00007366225,0.0004497772,0.0002280923,0.0004387936,0.0003917272,0.00002019944,0.0001279139],"genre_scores_gemma":[0.9960563,0.001825638,0.00009424923,0.00009320996,0.00009067383,0.0003963935,0.00006021449,0.00005515393,0.001328165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4347831,"threshold_uncertainty_score":0.9999394,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028366722","doi":"10.1038/oncsis.2012.25","title":"Overexpressing the CCL2 chemokine in an epithelial ovarian cancer cell line results in latency of in vivo tumourigenicity","year":2012,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Université de Montréal; Centre Hospitalier de l’Université de Montréal; McGill University","funders":"Terry Fox Research Institute; McGill University Health Centre; Cancer Research Society; McGill University","keywords":"CCL2; Immunohistochemistry; Biology; Cancer research; Chemokine; Ovarian cancer; Cell culture; Transcriptome; Cell; Gene; Cancer; Gene expression; Immunology; Immune system","authors":[{"name":"Paulina M. Wojnarowicz","is_ca":true},{"name":"Karen Gambaro","is_ca":true},{"name":"Manon de Ladurantaye","is_ca":true},{"name":"Michael C. Quinn","is_ca":true},{"name":"Diane Provencher","is_ca":true},{"name":"Patricia N. Tonin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03226192986578952,"gpt":0.3104675533251376,"spread":0.2782056234593481,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000547469,0.0001815035,0.0004210344,0.0001142755,0.00002764167,0.00000833172,0.0001156775,0.0001124892,0.0002329827],"category_scores_gemma":[0.00003799464,0.0001281632,0.00007449323,0.0003811248,0.00004029058,0.0001570712,0.00004298811,0.0001345859,0.000003096923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004548929,"about_ca_system_score_gemma":0.000186231,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02207913,"about_ca_topic_score_gemma":0.01445067,"domain_scores_codex":[0.9984625,0.0001110463,0.0005346799,0.000280762,0.0002288244,0.0003821875],"domain_scores_gemma":[0.9991921,0.00009673001,0.0001608237,0.0003942875,0.00004492067,0.0001111913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009452192,0.00276927,0.8953006,0.00008312258,0.00002783708,0.00004177911,0.002617944,0.0002051695,0.08808779,0.00002973073,0.00009436766,0.009797111],"study_design_scores_gemma":[0.005057742,0.0001342774,0.6783913,0.0002768395,0.00005933386,0.000002679389,0.0001274317,0.0001410203,0.3151382,0.0000143069,0.0005452607,0.0001115546],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994173,0.002289676,0.000002464735,0.001139976,0.0001618328,0.0004026353,0.0001284781,0.000009960246,0.001691982],"genre_scores_gemma":[0.9980904,0.0007530692,0.0003700847,0.0001798737,0.000341377,0.00009590587,0.00001324588,0.00002627709,0.0001297709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2270504,"threshold_uncertainty_score":0.9844329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4323971781","doi":"10.1038/s41389-023-00453-7","title":"Overexpression of tripartite motif-containing 47 (TRIM47) confers sensitivity to PARP inhibition via ubiquitylation of BRCA1 in triple negative breast cancer cells","year":2023,"lang":"en","type":"article","venue":"Oncogenesis","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"MD Precision (Canada)","funders":"Education Department of Jiangxi Province; Gannan Medical University; Peking University; Natural Science Foundation of Jiangxi Province; National Natural Science Foundation of China; Sun Yat-sen University; Natural Science Foundation of Guangdong Province","keywords":"Olaparib; Triple-negative breast cancer; Cancer research; PARP inhibitor; Poly ADP ribose polymerase; Homologous recombination; Ubiquitin ligase; DNA damage; Biology; DNA repair; Breast cancer; Ubiquitin; Molecular biology; Cancer; DNA; Polymerase; Gene; Genetics","authors":[{"name":"Fengen Liu","is_ca":false},{"name":"Binhui Xie","is_ca":false},{"name":"Rong Ye","is_ca":false},{"name":"Yuankang Xie","is_ca":false},{"name":"Baiyin Zhong","is_ca":false},{"name":"Jinrong Zhu","is_ca":false},{"name":"Yaoliang Tang","is_ca":false},{"name":"Zelong Lin","is_ca":false},{"name":"Huiru Tang","is_ca":true},{"name":"Ziqing Wu","is_ca":false},{"name":"Heping Li","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03146967025083622,"gpt":0.3253202689941541,"spread":0.2938505987433179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006880718,0.0001962507,0.0005885824,0.0004916873,0.00004920003,0.000006858382,0.00004230425,0.0001521692,0.0001618262],"category_scores_gemma":[0.0000679856,0.0002003309,0.0001347374,0.001230599,0.00008004563,0.0001609118,0.00004744275,0.0001235445,0.00002168918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003837509,"about_ca_system_score_gemma":0.000248947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002282724,"about_ca_topic_score_gemma":0.0003717381,"domain_scores_codex":[0.9980123,0.0002446932,0.0006256583,0.0003687115,0.0004536363,0.0002950203],"domain_scores_gemma":[0.9986524,0.0002556707,0.0003551654,0.0002676694,0.0003267832,0.0001423123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002222779,0.0001615995,0.01356193,0.000162852,0.00005032362,0.00001709816,0.00174073,0.002212981,0.9667966,0.00001923476,0.0004219369,0.01263196],"study_design_scores_gemma":[0.003932956,0.0002161292,0.1393381,0.001109687,0.00004753366,0.000008663293,0.0004491405,0.00195675,0.852649,0.000065267,0.00007241583,0.0001544211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966295,0.00004103089,0.0008318569,0.0006483031,0.0001951573,0.0008019311,0.0003884229,0.00006573236,0.0003981002],"genre_scores_gemma":[0.9989115,0.0001259689,0.0002598086,0.0002504791,0.0001313642,0.0001057571,0.00006091294,0.0000350074,0.0001192307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1257761,"threshold_uncertainty_score":0.8169258,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4213134475","doi":"10.1038/s41389-022-00384-9","title":"Quercetin induces pannexin 1 expression via an alternative transcript with a translationally active 5′ leader in rhabdomyosarcoma","year":2022,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Connexins and lens biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Cancer Research Society; University of Ottawa","keywords":"Biology; Transcription factor; Untranslated region; Downregulation and upregulation; Skeletal muscle; Myogenin; Quercetin; Messenger RNA; Transcription (linguistics); Luciferase; Cell biology; Myogenesis; Myocyte; Genetics; Anatomy; Transfection; Cell culture; Biochemistry; Gene","authors":[{"name":"Xiao Xiang","is_ca":true},{"name":"Huy‐Dung Hoang","is_ca":true},{"name":"Victoria H. Gilchrist","is_ca":true},{"name":"Stéphanie Langlois","is_ca":true},{"name":"Tommy Alain","is_ca":true},{"name":"Kyle N. Cowan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01821609646610702,"gpt":0.2538478023808219,"spread":0.2356317059147149,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001780739,0.0001856756,0.0001866993,0.0001036047,0.0001473868,0.000009544124,0.0002415006,0.0000999867,0.0002233447],"category_scores_gemma":[0.000007024646,0.0001651246,0.00006950818,0.0001513738,0.00007380603,0.000009958976,0.00005054141,0.0001527714,0.000001942932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003720285,"about_ca_system_score_gemma":0.0001179199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002689781,"about_ca_topic_score_gemma":0.0009843933,"domain_scores_codex":[0.9985338,0.0003475027,0.0001926002,0.0004976988,0.0001734349,0.0002548953],"domain_scores_gemma":[0.9995571,0.0000203513,0.00007421992,0.0002319986,0.00004694112,0.00006942781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001351872,0.0002671265,0.002473096,0.000004979546,0.00004187566,0.00002263492,0.001199406,0.0005166258,0.9720505,0.00003357432,0.00003379052,0.02200448],"study_design_scores_gemma":[0.002700742,0.002541369,0.02869036,0.00001704555,0.00003087022,0.00008901833,0.002947077,0.0002040142,0.9319978,0.0001358066,0.03006894,0.0005769047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969232,0.0003615318,0.001298794,0.0004379457,0.00006989736,0.0002469357,0.00009379673,0.00001260845,0.0005552912],"genre_scores_gemma":[0.998107,0.00002847302,0.0006463999,0.0003770087,0.0001188937,0.0002016033,0.0002963614,0.00002970564,0.0001945917],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04005269,"threshold_uncertainty_score":0.6733587,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055495578","doi":"10.1038/oncsis.2014.28","title":"The inhibitor of kappa B kinase-epsilon regulates MMP-3 expression levels and can promote lung metastasis","year":2014,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Mitacs; McGill University","keywords":"Kappa; Metastasis; Cancer research; Matrix metalloproteinase; Kinase; Internal medicine; Medicine; Oncology; Biology; Chemistry; Cell biology; Mathematics; Cancer","authors":[{"name":"Erica Seccareccia","is_ca":true},{"name":"Maxime Pinard","is_ca":true},{"name":"N Wang","is_ca":true},{"name":"S Li","is_ca":true},{"name":"Julia V. Burnier","is_ca":true},{"name":"David Dankort","is_ca":true},{"name":"Pnina Brodt","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008743170415083084,"gpt":0.2323380572407195,"spread":0.2235948868256365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003850506,0.0001678552,0.0001781874,0.00002837718,0.0001927874,0.00002569275,0.0001630971,0.0001303398,0.000006485183],"category_scores_gemma":[0.0001197113,0.0001166741,0.00008757475,0.00006889224,0.00008569987,0.000004955566,0.0001584406,0.0000451349,0.000001125966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001005326,"about_ca_system_score_gemma":0.00004221602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002607006,"about_ca_topic_score_gemma":0.00002607466,"domain_scores_codex":[0.9989594,0.0001285508,0.0002278814,0.0003158083,0.0001436627,0.0002247563],"domain_scores_gemma":[0.9992418,0.00002605283,0.000137117,0.0004187631,0.00008360355,0.00009263501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004979319,0.00002559775,0.0003084357,0.00003160535,0.00003375214,5.53514e-7,0.0000262269,0.000002418637,0.9843542,0.000112881,0.0008439517,0.01421056],"study_design_scores_gemma":[0.0003190955,0.0002388131,0.0005618078,0.00005185713,0.00004433508,0.000005682137,0.00002555234,0.00004617359,0.9839219,0.0003261122,0.01430587,0.000152768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960844,0.002340203,0.0006222962,0.0002830308,0.0001437305,0.0002431328,0.00004464449,0.00001181567,0.0002267619],"genre_scores_gemma":[0.9975767,0.0001305901,0.001649238,0.00007428962,0.0001912889,0.00003942623,0.00002253114,0.00002636015,0.0002896416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01405779,"threshold_uncertainty_score":0.4757833,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4319593697","doi":"10.1038/s41389-023-00450-w","title":"Negligible role of TRAIL death receptors in cell death upon endoplasmic reticulum stress in B-cell malignancies","year":2023,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Horizon 2020 Framework Programme; European Commission","keywords":"Endoplasmic reticulum; Programmed cell death; Receptor; Cell biology; Cell; Apoptosis; Biology; Medicine; Internal medicine; Biochemistry","authors":[{"name":"Francesca Favaro","is_ca":false},{"name":"Demi Both","is_ca":false},{"name":"Ingrid A. M. Derks","is_ca":false},{"name":"Marcel Spaargaren","is_ca":false},{"name":"Cristina Muñoz‐Pinedo","is_ca":false},{"name":"Eric Eldering","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009431183462877581,"gpt":0.2335512499857148,"spread":0.2241200665228372,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001773351,0.000274045,0.0003398021,0.0002349972,0.00004132073,0.00001894274,0.0002926661,0.0002231395,0.00003829499],"category_scores_gemma":[0.00006091076,0.0002736848,0.0001689875,0.0004340738,0.00004666077,0.000008613149,0.0001432335,0.0000914417,0.00003115326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000033991,"about_ca_system_score_gemma":0.0001680708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005177113,"about_ca_topic_score_gemma":0.0005488876,"domain_scores_codex":[0.9981243,0.0001157719,0.0004585327,0.0005443831,0.0002326843,0.0005243489],"domain_scores_gemma":[0.9991872,0.00004218352,0.0001383182,0.0004277404,0.00005769807,0.0001468474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001252342,0.0003347069,0.2731241,0.0001485224,0.0000128308,0.0000483342,0.0001650365,0.001831254,0.723246,0.00005948188,0.0002999986,0.0006044494],"study_design_scores_gemma":[0.001336148,0.0001804477,0.01403904,0.00008274379,0.00002766304,0.000003159762,0.000937931,0.0003417566,0.9800885,0.00008566759,0.002572064,0.0003048612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922901,0.002689732,0.000006712542,0.00003866486,0.000133684,0.0002511841,0.0001348161,0.00002535186,0.004429783],"genre_scores_gemma":[0.9949653,0.003365151,0.0002479233,0.00003085541,0.00006234008,0.00008913893,0.0002227407,0.00004619866,0.000970411],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2590851,"threshold_uncertainty_score":0.9999715,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410035685","doi":"10.1038/s41389-025-00552-7","title":"FLT4 activation promotes acute lymphoid leukemia survival through stabilization of MDM2/MDMX and inactivation of p53","year":2025,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Cancer-related Molecular Pathways","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Fonds de Recherche du Québec - Santé; Fondation de l’Hôpital Maisonneuve-Rosemont; Cancer Research Society","keywords":"MDMX; Cancer research; Mdm2; Biology; DNA damage; Cancer cell; Leukemia; Carcinogenesis; Cancer; Apoptosis; Receptor tyrosine kinase; Palbociclib; Signal transduction; Cell biology; Immunology; DNA; Genetics; Breast cancer","authors":[{"name":"Djazia Haferssas","is_ca":true},{"name":"Marion Dubuissez","is_ca":true},{"name":"Jonatan Barrera‐Chimal","is_ca":true},{"name":"Clémence Messmer","is_ca":true},{"name":"El Bachir Affar","is_ca":true},{"name":"Bruno Larrivée","is_ca":true},{"name":"Xuesong Liu","is_ca":false},{"name":"Casimiro Gerarduzzi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01329505450367629,"gpt":0.2830334721256499,"spread":0.2697384176219736,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001602767,0.0001374738,0.0003460427,0.0001639058,0.00004374966,0.000005968024,0.00005229989,0.0001593525,0.00002142556],"category_scores_gemma":[0.0002310402,0.0001358052,0.00006789933,0.0006485988,0.00008244136,0.0001465998,0.00004272944,0.00006172115,7.956432e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004503616,"about_ca_system_score_gemma":0.0005736672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003782,"about_ca_topic_score_gemma":0.00002679571,"domain_scores_codex":[0.9989306,0.00006127021,0.0003611445,0.0002524462,0.0002702871,0.0001242472],"domain_scores_gemma":[0.9990572,0.00008828881,0.0002314078,0.0002727502,0.0003183135,0.00003201894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003980708,0.0001120779,0.008444428,0.0003508005,0.0002259413,0.000001400155,0.0003891913,0.00007837982,0.9719456,0.001219093,0.0000741788,0.01676087],"study_design_scores_gemma":[0.001656143,0.0002208535,0.01978415,0.0003272652,0.0003115538,0.000006439876,0.0001600679,0.0005021931,0.9761331,0.0002628129,0.0005409534,0.00009448498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788724,0.0003284599,0.01738739,0.0002837239,0.000135076,0.0005136416,0.00001973155,0.00003834291,0.002421198],"genre_scores_gemma":[0.9978092,0.0003096412,0.001475574,0.00005995885,0.00003120193,0.00002449732,0.00009092024,0.00002211785,0.0001769341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01893672,"threshold_uncertainty_score":0.5537977,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412364265","doi":"10.1038/s41389-025-00567-0","title":"Ketone drink enhances therapeutic efficacy in prostate cancer by targeting EZH2","year":2025,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Diet and metabolism studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"National Institute of General Medical Sciences; Robert H. Lurie Comprehensive Cancer Center; National Cancer Institute; National Institutes of Health; U.S. Department of Health and Human Services; Northwestern University; U.S. Department of Defense","keywords":"Prostate cancer; Medicine; Prostate; Cancer; Oncology; Internal medicine","authors":[{"name":"Chaehyun Yum","is_ca":false},{"name":"Richard A Schäfer","is_ca":false},{"name":"Rui Wang","is_ca":false},{"name":"Ting-You Wang","is_ca":false},{"name":"X. Lu","is_ca":false},{"name":"Qi Liu","is_ca":false},{"name":"Yanan Ren","is_ca":false},{"name":"Qingshu Meng","is_ca":false},{"name":"Yong Yang","is_ca":false},{"name":"Xin Zhang","is_ca":false},{"name":"Yan Xiong","is_ca":false},{"name":"Xufen Yu","is_ca":false},{"name":"Xiaoyu Zhang","is_ca":false},{"name":"Jian Jin","is_ca":false},{"name":"Xuesen Dong","is_ca":true},{"name":"Yi Yang","is_ca":false},{"name":"Rendong Yang","is_ca":false},{"name":"Qi Cao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01212859059339834,"gpt":0.3159791657146523,"spread":0.303850575121254,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001829316,0.000158608,0.0003913228,0.0001104051,0.00007596441,0.0000134459,0.00007486287,0.00004586204,0.00007345897],"category_scores_gemma":[0.00006028073,0.0001263391,0.00007391952,0.0004384269,0.00006163197,0.00004360065,0.00004660766,0.00009282317,0.00001878983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006068298,"about_ca_system_score_gemma":0.0001238709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002870535,"about_ca_topic_score_gemma":0.00009254317,"domain_scores_codex":[0.9989823,0.00003696811,0.0002517868,0.0002721236,0.0001534063,0.0003034258],"domain_scores_gemma":[0.9996132,0.00007400843,0.00005390423,0.0001452377,0.00006452021,0.00004918953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003260789,0.000523892,0.2029147,0.0002305771,0.0003458304,0.00002014663,0.001515971,0.000006794999,0.3883967,0.0001160649,0.01435956,0.3912436],"study_design_scores_gemma":[0.002987828,0.00008550687,0.3633111,0.0003881791,0.0003585436,6.173893e-7,0.0007314435,0.0000225653,0.1992465,0.00006667253,0.4325266,0.0002744445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9226353,0.0654756,0.00001489941,0.002853144,0.0004745589,0.0003662582,0.00000773354,0.00005782065,0.008114709],"genre_scores_gemma":[0.9723322,0.01243211,0.0001601181,0.001003915,0.0001176007,0.0001598365,0.000009990669,0.00001818979,0.01376598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.418167,"threshold_uncertainty_score":0.5151958,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407033507","doi":"10.1038/s41389-025-00545-6","title":"Subtype-specific role for Jagged1 in promoting or inhibiting breast tumor formation","year":2025,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"Canadian Cancer Society Research Institute; Mississippi IDeA Network of Biomedical Research Excellence; U.S. Department of Health and Human Services; National Institute of General Medical Sciences; U.S. Department of Defense","keywords":"Cancer research; Breast tumor; Cell biology; Biology; Chemistry; Medicine; Breast cancer; Internal medicine; Cancer","authors":[{"name":"Wen-Cheng Chung","is_ca":false},{"name":"Wei Wang","is_ca":true},{"name":"Lavanya Challagundla","is_ca":false},{"name":"Charles D. Moore","is_ca":false},{"name":"Sean E. Egan","is_ca":true},{"name":"Keli Xu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01472417422302702,"gpt":0.255013775079091,"spread":0.240289600856064,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003302661,0.0001245823,0.0001329726,0.00008326042,0.0001046586,0.00003379414,0.0001198823,0.00009155263,0.000016944],"category_scores_gemma":[0.00009149555,0.0001150291,0.00006870572,0.0001842235,0.00001880735,0.000008304685,0.00007030887,0.00004771836,0.00000709701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000357002,"about_ca_system_score_gemma":0.0001056761,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001281183,"about_ca_topic_score_gemma":0.0001203277,"domain_scores_codex":[0.9991162,0.00004616263,0.0002554595,0.0002632765,0.00006709405,0.0002518146],"domain_scores_gemma":[0.999612,0.00002443744,0.00008591693,0.0001618534,0.00007898034,0.00003680111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002430476,0.00005809165,0.002195262,0.0001238956,0.00001096817,0.000002513144,0.0001118814,0.000009465621,0.9300265,0.0001404211,0.0003591715,0.06671879],"study_design_scores_gemma":[0.000740082,0.0001018388,0.001085656,0.0001096865,0.000008242348,0.00002937215,0.0002774013,0.0003388143,0.9677213,0.0001195166,0.02931273,0.0001553773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935861,0.0007081422,0.002113387,0.000202646,0.00008155435,0.0005434026,0.00005260204,0.00002169358,0.002690447],"genre_scores_gemma":[0.9970652,0.00004189328,0.001692516,0.0001896957,0.0001729609,0.0002046803,0.0001168778,0.00001866065,0.0004974863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06656341,"threshold_uncertainty_score":0.4690752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4416339432","doi":"10.1038/s41389-025-00586-x","title":"Pannexin 1 induces Rhabdomyosarcoma cell fusion by downregulating APOBEC2","year":2025,"lang":"en","type":"article","venue":"Oncogenesis","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Cancer Research Society; University of Ottawa","keywords":"Downregulation and upregulation; Rhabdomyosarcoma; Cell culture; Ectopic expression; Cell fusion; Cell","authors":[{"name":"Alexandra Welten","is_ca":true},{"name":"Amit Bera","is_ca":true},{"name":"Stéphanie Langlois","is_ca":true},{"name":"Xiao Xiang","is_ca":true},{"name":"Keshav Gupta","is_ca":true},{"name":"Emily Freeman","is_ca":true},{"name":"Kyle N. Cowan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004246200418276048,"gpt":0.235197736522053,"spread":0.230951536103777,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001016058,0.0001532497,0.0001401676,0.00004403426,0.0001651011,0.00001319032,0.0001930962,0.0002098211,0.00005221448],"category_scores_gemma":[0.00002646992,0.0001478177,0.00009305053,0.0001324181,0.00006684735,0.000003180784,0.0001448296,0.00005821266,0.00001657235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009234392,"about_ca_system_score_gemma":0.00006831877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006495821,"about_ca_topic_score_gemma":0.0000249201,"domain_scores_codex":[0.9990975,0.000078481,0.0001692883,0.0003572844,0.0000678313,0.0002296252],"domain_scores_gemma":[0.9995309,0.00002167491,0.000061156,0.0002974969,0.00003950807,0.00004922862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009243467,0.00009421973,0.002262315,0.00002362314,0.00002591328,5.532146e-7,0.00001497093,0.00002485524,0.963111,0.00005672869,0.01716121,0.01713216],"study_design_scores_gemma":[0.000578184,0.0001192534,0.007507277,0.00001302809,0.00002441842,8.005137e-7,0.0001392745,0.00002434559,0.9447076,0.0001627574,0.04652008,0.0002030253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817676,0.002487398,0.0005614896,0.0002988033,0.0001415873,0.00011345,0.00001582244,0.00002151161,0.01459236],"genre_scores_gemma":[0.9959669,0.0001795035,0.0002988542,0.0007458752,0.00007223335,0.00002877709,0.0001617366,0.00001363782,0.002532522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02935886,"threshold_uncertainty_score":0.6027833,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}