{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":292,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":292,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"0e910beeb398","filters":{"venue":"Proteins Structure Function and Bioinformatics"}},"results":[{"id":"W2130939465","doi":"10.1002/prot.23188","title":"Prediction of protein secondary structure from circular dichroism using theoretically derived spectra","year":2011,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":750,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Protein secondary structure; Protein Data Bank; Protein Data Bank (RCSB PDB); Circular dichroism; Spectral line; Set (abstract data type); Protein structure; Chemistry; Biological system; Data set; Protein tertiary structure; Crystallography; Reference data; Algorithm; Computer science; Data mining; Physics; Artificial intelligence; Biology; Stereochemistry; Biochemistry","authors":[{"name":"Caroline Louis‐Jeune","is_ca":true},{"name":"Miguel A. Andrade‐Navarro","is_ca":false},{"name":"Carol Perez‐Iratxeta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00969396886819784,"gpt":0.1867185213220017,"spread":0.1770245524538038,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001479636,0.001299151,0.001182076,0.002094387,0.0005688022,0.0009149244,0.0008689679,0.0007407135,0.001589451],"category_scores_gemma":[0.003936295,0.0004607275,0.0009419978,0.001123183,0.0004663097,0.0006485185,0.000539127,0.0009929294,0.001470507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001011582,"about_ca_system_score_gemma":0.00113736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001373792,"about_ca_topic_score_gemma":0.001263659,"domain_scores_codex":[0.9994815,0.0001343475,0.00004276333,0.0001514779,0.0001506059,0.00003936673],"domain_scores_gemma":[0.9986311,0.0006656412,0.0001597291,0.0001645913,0.0003051558,0.0000738161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00160625,0.0005498617,0.03214031,0.001339411,0.0002447655,0.0008389408,0.0005112582,0.2580376,0.5713654,0.01431851,0.007171986,0.1118757],"study_design_scores_gemma":[0.0000481291,0.0001405252,0.005668202,0.00002851824,0.00003323859,0.0002452318,0.00005028772,0.8629861,0.1243031,0.00352929,0.002918699,0.00004866278],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3563918,0.0006120725,0.6215311,0.0001627131,0.00004965513,0.0001321623,0.005722408,0.01301194,0.002386115],"genre_scores_gemma":[0.4895501,0.0004376628,0.4945967,0.00005634284,0.00001801786,0.0001860844,0.01323182,0.001306496,0.0006167685],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002094387,"threshold_uncertainty_score":0.007825196,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160907977","doi":"10.1002/prot.22234","title":"Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":574,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Louisiana-Pacific (Canada)","funders":"","keywords":"Tautomer; Macromolecule; Solvation; Chemistry; Conformational isomerism; van der Waals force; Computational chemistry; Ionization; Hydrogen atom; Chemical physics; Molecule; Ion; Stereochemistry; Group (periodic table)","authors":[{"name":"Paul Labute","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006493487316384788,"gpt":0.1975555903765083,"spread":0.1910621030601235,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001049097,0.00278195,0.001930851,0.002235073,0.001400908,0.002775681,0.003421338,0.001181259,0.02166567],"category_scores_gemma":[0.002565595,0.001414685,0.001840314,0.001628387,0.0006830808,0.00218552,0.002692668,0.00205121,0.009437756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001064358,"about_ca_system_score_gemma":0.001611838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003133312,"about_ca_topic_score_gemma":0.003180128,"domain_scores_codex":[0.9995541,0.0000713206,0.00003231091,0.0001223401,0.0001857119,0.00003412429],"domain_scores_gemma":[0.9993236,0.0002360109,0.0000798772,0.0001830012,0.0001199684,0.00005749067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001474648,0.0002591483,0.009489396,0.001831664,0.0004892107,0.0008618952,0.0005331718,0.056382,0.03105205,0.02590657,0.2524481,0.619272],"study_design_scores_gemma":[0.0004512244,0.0001667213,0.002079263,0.0001330074,0.0001351926,0.001380398,0.0001594934,0.6942023,0.0754036,0.03751156,0.1880916,0.0002856475],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.008037631,0.0003842629,0.8720525,0.0001760506,0.0001640521,0.000107457,0.008219685,0.1084267,0.002431742],"genre_scores_gemma":[0.08373249,0.000860505,0.8679622,0.0001873302,0.00008651274,0.0005708736,0.02624645,0.01650182,0.003851813],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02166567,"threshold_uncertainty_score":0.07247889,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018410079","doi":"10.1002/prot.21804","title":"Docking and scoring protein complexes: CAPRI 3rd Edition","year":2007,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":355,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Institute of Genetics; Canadian Institutes of Health Research; University of Toronto","keywords":"Docking (animal); Computational biology; Computer science; Artificial intelligence; Machine learning; Biology; Medicine","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Raúl Méndez","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009686016743464136,"gpt":0.2151971343064413,"spread":0.2055111175629772,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004615696,0.006014321,0.004142697,0.004328724,0.001294296,0.006510605,0.01313696,0.002483386,0.1006354],"category_scores_gemma":[0.008609201,0.005487099,0.003702091,0.003547351,0.0009512555,0.00286098,0.004499802,0.006355047,0.1367026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002081811,"about_ca_system_score_gemma":0.002148198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005147673,"about_ca_topic_score_gemma":0.006155337,"domain_scores_codex":[0.9972959,0.0003926602,0.0002386955,0.0004168539,0.001420614,0.0002352626],"domain_scores_gemma":[0.9957349,0.0008642426,0.000181599,0.001290438,0.001712261,0.0002166174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0004785088,0.000218264,0.0007504689,0.001240277,0.0003570397,0.0001914381,0.0001623048,0.01248516,0.005967908,0.007091717,0.8231407,0.1479162],"study_design_scores_gemma":[0.0005890626,0.0002268305,0.003213847,0.0007313569,0.000202763,0.001010775,0.00007060252,0.1436473,0.0300377,0.02710603,0.7926921,0.0004717406],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.002278681,0.004687504,0.4944504,0.0006591326,0.001111906,0.0008186352,0.04704412,0.4102241,0.03872561],"genre_scores_gemma":[0.0162383,0.005850002,0.5761307,0.001366982,0.000425751,0.004084182,0.1921405,0.1341685,0.06959517],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1006354,"threshold_uncertainty_score":0.336659,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129414710","doi":"10.1002/prot.20551","title":"Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures","year":2005,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":347,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Docking (animal); Computational biology; Macromolecular docking; Computer science; Protein–ligand docking; Searching the conformational space for docking; Protein structure; Artificial intelligence; Chemistry; Virtual screening; Biology; Biochemistry; Drug discovery; Medicine","authors":[{"name":"Raúl Méndez","is_ca":false},{"name":"Raphaël Leplae","is_ca":false},{"name":"Marc F. Lensink","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01133100212198269,"gpt":0.2838555535211666,"spread":0.272524551399184,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04394697,0.003077874,0.002111561,0.003113894,0.001558007,0.004531601,0.004486077,0.001853662,0.004573712],"category_scores_gemma":[0.04725021,0.0008669226,0.00240092,0.001670731,0.001077645,0.00205901,0.004313002,0.002284699,0.003127236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002481085,"about_ca_system_score_gemma":0.003983942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007974257,"about_ca_topic_score_gemma":0.006050303,"domain_scores_codex":[0.9669139,0.0108375,0.001850127,0.004130624,0.01381517,0.002452629],"domain_scores_gemma":[0.9378918,0.02909654,0.005184509,0.008604288,0.01708189,0.002140978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.007591771,0.001474636,0.1146527,0.001619202,0.001360702,0.0009635111,0.002757833,0.2571459,0.04989508,0.004985109,0.02692927,0.5306243],"study_design_scores_gemma":[0.000393007,0.003910457,0.1217622,0.0005213359,0.0006323752,0.0006500644,0.002016057,0.7016597,0.1287927,0.003990542,0.03498891,0.0006827185],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7640753,0.00247391,0.1985038,0.001214263,0.000295705,0.001053523,0.003243949,0.01470317,0.01443636],"genre_scores_gemma":[0.8512062,0.0005758,0.1308675,0.0002987531,0.0000540182,0.0004974109,0.01083404,0.001214954,0.004451358],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04394697,"threshold_uncertainty_score":0.2324166,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165531467","doi":"10.1002/prot.24428","title":"Docking, scoring, and affinity prediction in CAPRI","year":2013,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Canada Research Chairs; Hospital for Sick Children; University of Toronto","funders":"Agence Nationale de la Recherche","keywords":"Docking (animal); Computer science; Artificial intelligence; Computational biology; Biology; Medicine","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004166134472791118,"gpt":0.1880848308742308,"spread":0.1839186964014396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03636152,0.004898326,0.002923714,0.004333925,0.002288609,0.003652553,0.00660814,0.003335418,0.004747727],"category_scores_gemma":[0.03720323,0.001073812,0.001587051,0.003822215,0.001597171,0.002773353,0.00634913,0.003465715,0.002811166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003154808,"about_ca_system_score_gemma":0.003142802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01444196,"about_ca_topic_score_gemma":0.01334915,"domain_scores_codex":[0.9632831,0.01889701,0.001560231,0.002996719,0.01128148,0.001981493],"domain_scores_gemma":[0.9680277,0.01511226,0.001425991,0.00562117,0.00829778,0.001515137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.007432668,0.003817461,0.0394757,0.002680029,0.001766838,0.0006917485,0.001150021,0.3389241,0.03025606,0.01022231,0.07322519,0.4903579],"study_design_scores_gemma":[0.0006980529,0.002017998,0.01161612,0.0001351922,0.0001582347,0.0005377404,0.0004723209,0.935212,0.02581974,0.004985218,0.01807791,0.000269631],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.582352,0.009613418,0.2972987,0.002525018,0.001069168,0.003446257,0.007097053,0.05363904,0.04295933],"genre_scores_gemma":[0.6556678,0.001092184,0.3158965,0.0008708078,0.0001567809,0.001118794,0.0185433,0.00205047,0.004603324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03636152,"threshold_uncertainty_score":0.1923004,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2027403155","doi":"10.1002/prot.22818","title":"Docking and scoring protein interactions: CAPRI 2009","year":2010,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Docking (animal); Computer science; Protein–protein interaction; Web server; Computational biology; Artificial intelligence; Machine learning; Biology; Medicine; Biochemistry; The Internet; World Wide Web","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006309381073471988,"gpt":0.2139351207148065,"spread":0.2076257396413345,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02169785,0.003412409,0.002171803,0.002965275,0.001504304,0.002270985,0.005098512,0.002567787,0.004265643],"category_scores_gemma":[0.01610309,0.0009727858,0.001684713,0.001970145,0.001246332,0.00172869,0.004330488,0.002690933,0.004376207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002893769,"about_ca_system_score_gemma":0.00271653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01028507,"about_ca_topic_score_gemma":0.009491226,"domain_scores_codex":[0.9816895,0.007462997,0.0009198305,0.002645611,0.005704694,0.001577374],"domain_scores_gemma":[0.9878279,0.003707602,0.0009243978,0.003031724,0.003602491,0.0009058638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.01355498,0.005050711,0.06872749,0.001571092,0.001906404,0.0007928594,0.001220807,0.3008176,0.03898364,0.007850354,0.2140466,0.3454774],"study_design_scores_gemma":[0.0006638477,0.00269865,0.02325968,0.00007839049,0.0001249914,0.0004971698,0.0002454552,0.9176629,0.03240962,0.001890208,0.02024935,0.0002197568],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7471381,0.002468938,0.1307471,0.001196389,0.0006524666,0.002641036,0.01951066,0.06626771,0.02937755],"genre_scores_gemma":[0.6833328,0.0005621523,0.2297483,0.0005727922,0.00009579185,0.001542529,0.07306183,0.002862344,0.008221408],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02169785,"threshold_uncertainty_score":0.1147506,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972858764","doi":"10.1002/1097-0134(20000901)40:4<637::aid-prot80>3.0.co;2-4","title":"Polymer principles of protein calorimetric two-state cooperativity","year":2000,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Cooperativity; Thermodynamics; Chemistry; Enthalpy; Calorimetry; Protein folding; Heat capacity; Transition state theory; Crystallography; Physics; Kinetics; Quantum mechanics","authors":[{"name":"Hüseyin Kaya","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006139368365217365,"gpt":0.2092362043261783,"spread":0.203096835960961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002372567,0.0005743221,0.0008632274,0.001003851,0.000770567,0.001746529,0.00205345,0.00121283,0.00380615],"category_scores_gemma":[0.005313566,0.0006527207,0.0008065465,0.000557368,0.003594994,0.002616155,0.001581351,0.001669341,0.0009163088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001360158,"about_ca_system_score_gemma":0.000669538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004511496,"about_ca_topic_score_gemma":0.0001680189,"domain_scores_codex":[0.9983608,0.0002754079,0.00005817912,0.0004732239,0.0006343083,0.0001979639],"domain_scores_gemma":[0.9972941,0.00136588,0.0002673929,0.0005944319,0.0003127537,0.0001654089],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008114236,0.0001124035,0.001195792,0.0002514423,0.00003660157,0.0001978506,0.0003286072,0.03910978,0.04263197,0.8971678,0.001117989,0.01776858],"study_design_scores_gemma":[0.00004587329,0.000170617,0.001532851,0.00002894517,0.00002178882,0.0003744233,0.0000480902,0.309911,0.03103817,0.6473331,0.009424966,0.00007022298],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1617189,0.002088117,0.7837579,0.001617422,0.0002892634,0.0002755446,0.0002338637,0.0009160134,0.04910294],"genre_scores_gemma":[0.9254889,0.000920371,0.0603323,0.0005187038,0.0001281306,0.0007034519,0.000132466,0.0002022107,0.01157339],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00380615,"threshold_uncertainty_score":0.0127328,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2343238565","doi":"10.1002/prot.25007","title":"Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment","year":2016,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":164,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Division of Integrative Organismal Systems; Directorate for Biological Sciences; National Institutes of Health; Regione Campania; Division of Biological Infrastructure; National Institute of General Medical Sciences; Bundesministerium für Bildung und Forschung; Agence Nationale de la Recherche; National Research Foundation; Building Innovation Partnership; Research Councils UK; National Research Foundation of Korea; European Bioinformatics Institute; Ministerio de Economía y Competitividad; National Science Foundation; Horizon 2020 Framework Programme; Cancer Research UK; European Commission; Klaus Tschira Stiftung; Japan Agency for Medical Research and Development","keywords":"CASP; Homology modeling; Docking (animal); Computational biology; Computer science; Protein structure prediction; Template; Macromolecular docking; Protein structure; Bioinformatics; Data mining; Biology; Biochemistry; Programming language; Medicine","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Sameer Velankar","is_ca":false},{"name":"Andriy Kryshtafovych","is_ca":false},{"name":"Shen‐You Huang","is_ca":false},{"name":"Dina Schneidman‐Duhovny","is_ca":false},{"name":"Andrej Šali","is_ca":false},{"name":"Joan Segura","is_ca":false},{"name":"Narcís Fernández‐Fuentes","is_ca":false},{"name":"Shruthi Viswanath","is_ca":false},{"name":"Ron Elber","is_ca":false},{"name":"Sergei Grudinin","is_ca":false},{"name":"Petr Popov","is_ca":false},{"name":"Émilie Neveu","is_ca":false},{"name":"Hasup Lee","is_ca":false},{"name":"Minkyung Baek","is_ca":false},{"name":"Sangwoo Park","is_ca":false},{"name":"Lim Heo","is_ca":false},{"name":"Gyu Rie Lee","is_ca":false},{"name":"Chaok Seok","is_ca":false},{"name":"Sanbo Qin","is_ca":false},{"name":"Huan‐Xiang Zhou","is_ca":false},{"name":"David W. Ritchie","is_ca":false},{"name":"Bernard Maigret","is_ca":false},{"name":"Marie‐Dominique Devignes","is_ca":false},{"name":"Anisah W. Ghoorah","is_ca":false},{"name":"Mieczyslaw Torchala","is_ca":false},{"name":"Raphaël A. G. Chaleil","is_ca":false},{"name":"Paul A. Bates","is_ca":false},{"name":"Efrat Ben‐Zeev","is_ca":false},{"name":"Miriam Eisenstein","is_ca":false},{"name":"Surendra S. Negi","is_ca":false},{"name":"Zhiping Weng","is_ca":false},{"name":"Thom Vreven","is_ca":false},{"name":"Brian G. Pierce","is_ca":false},{"name":"Tyler Borrman","is_ca":false},{"name":"Jinchao Yu","is_ca":false},{"name":"Françoise Ochsenbein","is_ca":false},{"name":"Raphaël Guérois","is_ca":false},{"name":"Anna Vangone","is_ca":false},{"name":"João Rodrigues","is_ca":false},{"name":"Gydo van Zundert","is_ca":false},{"name":"Li C. Xue","is_ca":false},{"name":"Ezgi Karaca","is_ca":false},{"name":"Adrien S. J. Melquiond","is_ca":false},{"name":"Koen M. Visscher","is_ca":false},{"name":"Panagiotis L. Kastritis","is_ca":false},{"name":"Alexandre M. J. J. Bonvin","is_ca":false},{"name":"Xianjin Xu","is_ca":false},{"name":"Liming Qiu","is_ca":false},{"name":"Chengfei Yan","is_ca":false},{"name":"Jilong Li","is_ca":false},{"name":"Zhiwei Ma","is_ca":false},{"name":"Jianlin Cheng","is_ca":false},{"name":"Xiaoqin Zou","is_ca":false},{"name":"Lenna X. Peterson","is_ca":false},{"name":"Hyungrae Kim","is_ca":false},{"name":"Amit Roy","is_ca":false},{"name":"Xusi Han","is_ca":false},{"name":"Juan Esquivel‐Rodríguez","is_ca":false},{"name":"Daisuke Kihara","is_ca":false},{"name":"Xiaofeng Yu","is_ca":false},{"name":"Neil J. Bruce","is_ca":false},{"name":"Jonathan C. Fuller","is_ca":false},{"name":"Rebecca C. Wade","is_ca":false},{"name":"Ivan Anishchenko","is_ca":false},{"name":"Petras J. Kundrotas","is_ca":false},{"name":"Ilya A. Vakser","is_ca":false},{"name":"Kenichiro Imai","is_ca":false},{"name":"Kazunori Yamada","is_ca":false},{"name":"Toshiyuki Oda","is_ca":false},{"name":"Tsukasa Nakamura","is_ca":false},{"name":"Kentaro Tomii","is_ca":false},{"name":"Chiara Pallara","is_ca":false},{"name":"Miguel Romero‐Durana","is_ca":false},{"name":"Brian Jiménez‐García","is_ca":false},{"name":"Iain H. Moal","is_ca":false},{"name":"Juan Fernández‐Recio","is_ca":false},{"name":"Jong Young Joung","is_ca":false},{"name":"Jong Yun Kim","is_ca":false},{"name":"Keehyoung Joo","is_ca":false},{"name":"Jooyoung Lee","is_ca":false},{"name":"Dima Kozakov","is_ca":false},{"name":"Sándor Vajda","is_ca":false},{"name":"Scott E. Mottarella","is_ca":false},{"name":"David R. Hall","is_ca":false},{"name":"Dmitri Beglov","is_ca":false},{"name":"Artem B. Mamonov","is_ca":false},{"name":"Bing Xia","is_ca":false},{"name":"Tanggis Bohnuud","is_ca":false},{"name":"Carlos A. Del Carpio","is_ca":false},{"name":"Eichiro Ichiishi","is_ca":false},{"name":"Nicholas Marze","is_ca":false},{"name":"Daisuke Kuroda","is_ca":false},{"name":"Shourya S. Roy Burman","is_ca":false},{"name":"Jeffrey J. Gray","is_ca":false},{"name":"Edrisse Chermak","is_ca":false},{"name":"Luigi Cavallo","is_ca":false},{"name":"Romina Oliva","is_ca":false},{"name":"Andrey Tovchigrechko","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01192565642475052,"gpt":0.2104065274022416,"spread":0.198480870977491,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009685869,0.002776136,0.002283199,0.001154117,0.0009817231,0.001613203,0.002575283,0.001918032,0.003906263],"category_scores_gemma":[0.009520678,0.0006154698,0.002268913,0.001092009,0.0007058161,0.001503871,0.002018,0.002279912,0.002475557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008730781,"about_ca_system_score_gemma":0.0009785971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002471766,"about_ca_topic_score_gemma":0.001674721,"domain_scores_codex":[0.9952219,0.001960884,0.0003421997,0.0008041402,0.001267367,0.0004036495],"domain_scores_gemma":[0.9914908,0.004567923,0.0003922257,0.001857047,0.001185579,0.0005064022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003754355,0.001728113,0.03580023,0.000815313,0.001535184,0.001471551,0.000442342,0.7869223,0.06852597,0.005799443,0.0322727,0.06093252],"study_design_scores_gemma":[0.0001659192,0.0005749761,0.005091826,0.00001812594,0.00007875532,0.0003759841,0.0001310767,0.9525326,0.03638828,0.001860462,0.00271455,0.0000674548],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8572788,0.001243395,0.1178011,0.0005949762,0.000184026,0.0003563023,0.005282425,0.01104838,0.006210553],"genre_scores_gemma":[0.859213,0.0003052216,0.113638,0.0002205346,0.00002851806,0.0003121182,0.02364231,0.001329035,0.001311283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009685869,"threshold_uncertainty_score":0.05122441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2980678340","doi":"10.1002/prot.25838","title":"Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment","year":2019,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; H2020 European Institute of Innovation and Technology; Lietuvos Mokslo Taryba; National Research Foundation of Korea; Francis Crick Institute; Medical Research Council Canada; National Natural Science Foundation of China; Wellcome Trust; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Agence Nationale de la Recherche; National Research Foundation; National Science Foundation; Horizon 2020 Framework Programme; Cancer Research UK","keywords":"CASP; Template; Docking (animal); Protein structure prediction; Computer science; Computational biology; Chemistry; Biology; Protein structure; Biochemistry; Medicine","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Guillaume Brysbaert","is_ca":false},{"name":"Nurul Nadzirin","is_ca":false},{"name":"Sameer Velankar","is_ca":false},{"name":"Raphaël A. G. Chaleil","is_ca":false},{"name":"Tereza Gerguri","is_ca":false},{"name":"Paul A. Bates","is_ca":false},{"name":"Élodie Laine","is_ca":false},{"name":"Alessandra Carbone","is_ca":false},{"name":"Sergei Grudinin","is_ca":false},{"name":"Ren Kong","is_ca":false},{"name":"Ran‐Ran Liu","is_ca":false},{"name":"Ximing Xu","is_ca":false},{"name":"Hang Shi","is_ca":false},{"name":"Shan Chang","is_ca":false},{"name":"Miriam Eisenstein","is_ca":false},{"name":"Agnieszka Karczyńska","is_ca":false},{"name":"Cezary Czaplewski","is_ca":false},{"name":"Emilia A. Lubecka","is_ca":false},{"name":"Agnieszka G. Lipska","is_ca":false},{"name":"Paweł Krupa","is_ca":false},{"name":"Magdalena A. Mozolewska","is_ca":false},{"name":"Łukasz Golon","is_ca":false},{"name":"Sergey A. Samsonov","is_ca":false},{"name":"Adam Liwo","is_ca":false},{"name":"Silvia Crivelli","is_ca":false},{"name":"Guillaume Pagès","is_ca":false},{"name":"Mikhail Karasikov","is_ca":false},{"name":"Maria Kadukova","is_ca":false},{"name":"Yumeng Yan","is_ca":false},{"name":"Sheng‐You Huang","is_ca":false},{"name":"Mireia Rosell","is_ca":false},{"name":"Luis Angel Rodríguez‐Lumbreras","is_ca":false},{"name":"Miguel Romero‐Durana","is_ca":false},{"name":"Lucía Díaz","is_ca":false},{"name":"Juan Fernández‐Recio","is_ca":false},{"name":"Charles Christoffer","is_ca":false},{"name":"Genki Terashi","is_ca":false},{"name":"Woong‐Hee Shin","is_ca":false},{"name":"Tunde Aderinwale","is_ca":false},{"name":"Sai Raghavendra Maddhuri Venkata Subraman","is_ca":false},{"name":"Daisuke Kihara","is_ca":false},{"name":"Dima Kozakov","is_ca":false},{"name":"Sándor Vajda","is_ca":false},{"name":"Kathryn Porter","is_ca":false},{"name":"Dzmitry Padhorny","is_ca":false},{"name":"Israel Desta","is_ca":false},{"name":"Dmitri Beglov","is_ca":false},{"name":"Mikhail Ignatov","is_ca":false},{"name":"Sergey Kotelnikov","is_ca":false},{"name":"Iain H. Moal","is_ca":false},{"name":"David W. Ritchie","is_ca":false},{"name":"Isaure Chauvot de Beauchêne","is_ca":false},{"name":"Bernard Maigret","is_ca":false},{"name":"Marie‐Dominique Devignes","is_ca":false},{"name":"Maria Elisa Ruiz Echartea","is_ca":false},{"name":"Didier Barradas‐Bautista","is_ca":false},{"name":"Zhen Cao","is_ca":false},{"name":"Luigi Cavallo","is_ca":false},{"name":"Romina Oliva","is_ca":false},{"name":"Yue Cao","is_ca":false},{"name":"Yang Shen","is_ca":false},{"name":"Minkyung Baek","is_ca":false},{"name":"Taeyong Park","is_ca":false},{"name":"Hyeonuk Woo","is_ca":false},{"name":"Chaok Seok","is_ca":false},{"name":"Merav Braitbard","is_ca":false},{"name":"Lirane Bitton","is_ca":false},{"name":"Dina Scheidman‐Duhovny","is_ca":false},{"name":"Justas Dapkūnas","is_ca":false},{"name":"Kliment Olechnovič","is_ca":false},{"name":"Česlovas Venclovas","is_ca":false},{"name":"Petras J. Kundrotas","is_ca":false},{"name":"Saveliy Belkin","is_ca":false},{"name":"Devlina Chakravarty","is_ca":false},{"name":"Varsha D. Badal","is_ca":false},{"name":"Ilya A. Vakser","is_ca":false},{"name":"Thom Vreven","is_ca":false},{"name":"Sweta Vangaveti","is_ca":false},{"name":"Tyler Borrman","is_ca":false},{"name":"Zhiping Weng","is_ca":false},{"name":"Johnathan D. Guest","is_ca":false},{"name":"Ragul Gowthaman","is_ca":false},{"name":"Brian G. Pierce","is_ca":false},{"name":"Xianjin Xu","is_ca":false},{"name":"Rui Duan","is_ca":false},{"name":"Liming Qiu","is_ca":false},{"name":"Jie Hou","is_ca":false},{"name":"Benjamin Ryan Merideth","is_ca":false},{"name":"Zhiwei Ma","is_ca":false},{"name":"Jianlin Cheng","is_ca":false},{"name":"Xiaoqin Zou","is_ca":false},{"name":"Panagiotis I. Koukos","is_ca":false},{"name":"Jorge Roel‐Touris","is_ca":false},{"name":"Francesco Ambrosetti","is_ca":false},{"name":"Cunliang Geng","is_ca":false},{"name":"Jörg Schaarschmidt","is_ca":false},{"name":"Mikaël Trellet","is_ca":false},{"name":"Adrien S. J. Melquiond","is_ca":false},{"name":"Li C. Xue","is_ca":false},{"name":"Brian Jiménez‐García","is_ca":false},{"name":"Charlotte W. van Noort","is_ca":false},{"name":"Rodrigo V. Honorato","is_ca":false},{"name":"Alexandre M. J. J. Bonvin","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00675560256241768,"gpt":0.2063586023320199,"spread":0.1996029997696022,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01567856,0.002842165,0.002289907,0.0009533082,0.00112571,0.002249867,0.00260982,0.002943994,0.005306872],"category_scores_gemma":[0.01580656,0.0005850791,0.00240612,0.000879429,0.001095631,0.002131416,0.002777827,0.003762871,0.005047794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00108593,"about_ca_system_score_gemma":0.001896036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004052255,"about_ca_topic_score_gemma":0.003192864,"domain_scores_codex":[0.9910536,0.003382096,0.0005581488,0.002207568,0.001897992,0.0009006592],"domain_scores_gemma":[0.9869719,0.005663563,0.0005509807,0.00381404,0.001622599,0.00137694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.01605762,0.003205563,0.0851771,0.002100723,0.003796962,0.002271172,0.0009412701,0.483198,0.07040322,0.006876983,0.1867237,0.1392478],"study_design_scores_gemma":[0.0005920333,0.001356195,0.01277515,0.00008384662,0.0002093951,0.0006965991,0.00031835,0.9234062,0.04741507,0.003856097,0.009144314,0.0001466351],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8843701,0.003662877,0.05868889,0.001774137,0.0008893201,0.0004801653,0.01067877,0.02853825,0.0109174],"genre_scores_gemma":[0.8759322,0.0003585565,0.07072317,0.001113499,0.0001515631,0.0002097472,0.04565254,0.001811916,0.004046855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01567856,"threshold_uncertainty_score":0.08291709,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062743407","doi":"10.1002/1097-0134(20000901)40:4<543::aid-prot20>3.0.co;2-o","title":"Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity","year":2000,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Cooperativity; Chemistry; Statistical physics; Enthalpy; Thermodynamics; Globular protein; Protein folding; Hydrogen bond; Computational chemistry; Crystallography; Molecule; Physics","authors":[{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004242679406257823,"gpt":0.2057551532292796,"spread":0.2015124738230217,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006390437,0.0004193414,0.0004403785,0.0003480581,0.0002944929,0.0005567656,0.0008710573,0.0007476121,0.0005283605],"category_scores_gemma":[0.002563094,0.0003188207,0.000414773,0.0003457629,0.001114444,0.001019359,0.0007629145,0.0007390991,0.0001016357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004778541,"about_ca_system_score_gemma":0.0004352659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003205947,"about_ca_topic_score_gemma":0.001849863,"domain_scores_codex":[0.9998069,0.00006115976,0.000007601875,0.00003287273,0.00005335792,0.00003807425],"domain_scores_gemma":[0.9992256,0.0004613058,0.0001082989,0.000105661,0.00003262271,0.00006649005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00007202534,0.0001146455,0.003096556,0.00004996005,0.0000248487,0.0001251453,0.0001328397,0.9324401,0.01563583,0.04370745,0.0001568621,0.004443756],"study_design_scores_gemma":[0.000004165365,0.00001334302,0.0002437085,0.000001623103,0.000002843055,0.00001109306,0.00001089364,0.9911441,0.0009469641,0.007556595,0.00006080639,0.000003943721],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8015002,0.0002437943,0.1941569,0.0003709573,0.00001154712,0.00003771409,0.00005400934,0.0001876868,0.003437219],"genre_scores_gemma":[0.9923165,0.00009799869,0.007102269,0.00003743607,0.000006549431,0.00004694568,0.00002171514,0.00002046183,0.0003501468],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003205947,"threshold_uncertainty_score":0.006374598,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3195593976","doi":"10.1002/prot.26222","title":"Prediction of protein assemblies, the next frontier: The <scp>CASP14‐CAPRI</scp> experiment","year":2021,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; H2020 European Institute of Innovation and Technology; Lietuvos Mokslo Taryba; National Institute of General Medical Sciences; Ministerio de Ciencia e Innovación; Narodowe Centrum Nauki; National Natural Science Foundation of China; Cancer Research UK; National Science Foundation; Department of Energy and Climate Change; National Institutes of Health; Institut national de recherche en informatique et en automatique (INRIA); Changzhou Science and Technology Bureau; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust; Medical Research Council Canada; Francis Crick Institute","keywords":"CASP; Server; Computer science; Template; Protein structure prediction; Data mining; Biology; Computer network; Protein structure","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Guillaume Brysbaert","is_ca":false},{"name":"Théo Mauri","is_ca":false},{"name":"Nurul Nadzirin","is_ca":false},{"name":"Sameer Velankar","is_ca":false},{"name":"Raphaël A. G. Chaleil","is_ca":false},{"name":"Tereza Clarence","is_ca":false},{"name":"Paul A. Bates","is_ca":false},{"name":"Ren Kong","is_ca":false},{"name":"Bin Liu","is_ca":false},{"name":"Guangbo Yang","is_ca":false},{"name":"Ming Liu","is_ca":false},{"name":"Hang Shi","is_ca":false},{"name":"Xufeng Lu","is_ca":false},{"name":"Shan Chang","is_ca":false},{"name":"Raj S. Roy","is_ca":false},{"name":"Farhan Quadir","is_ca":false},{"name":"Jian Liu","is_ca":false},{"name":"Jianlin Cheng","is_ca":false},{"name":"Anna Antoniak","is_ca":false},{"name":"Cezary Czaplewski","is_ca":false},{"name":"Artur Giełdoń","is_ca":false},{"name":"Mateusz Kogut","is_ca":false},{"name":"Agnieszka G. Lipska","is_ca":false},{"name":"Adam Liwo","is_ca":false},{"name":"Emilia A. Lubecka","is_ca":false},{"name":"Martyna Maszota‐Zieleniak","is_ca":false},{"name":"Adam K. Sieradzan","is_ca":false},{"name":"Rafał Ślusarz","is_ca":false},{"name":"Patryk A. Wesołowski","is_ca":false},{"name":"Karolina Zięba","is_ca":false},{"name":"Carlos Adriel Del Carpio Munoz","is_ca":false},{"name":"Eiichiro Ichiishi","is_ca":false},{"name":"Ameya Harmalkar","is_ca":false},{"name":"Jeffrey J. Gray","is_ca":false},{"name":"Alexandre M. J. J. Bonvin","is_ca":false},{"name":"Francesco Ambrosetti","is_ca":false},{"name":"Rodrigo V. Honorato","is_ca":false},{"name":"Zuzana Jandová","is_ca":false},{"name":"Brian Jiménez‐García","is_ca":false},{"name":"Panagiotis I. Koukos","is_ca":false},{"name":"Siri van Keulen","is_ca":false},{"name":"Charlotte W. van Noort","is_ca":false},{"name":"Manon Réau","is_ca":false},{"name":"Jorge Roel‐Touris","is_ca":false},{"name":"Sergei Kotelnikov","is_ca":false},{"name":"Dzmitry Padhorny","is_ca":false},{"name":"Kathryn A. Porter","is_ca":false},{"name":"Andrey Alekseenko","is_ca":false},{"name":"Mikhail Ignatov","is_ca":false},{"name":"Israel Desta","is_ca":false},{"name":"Ryota Ashizawa","is_ca":false},{"name":"Zhuyezi Sun","is_ca":false},{"name":"Usman Ghani","is_ca":false},{"name":"Nasser Hashemi","is_ca":false},{"name":"Sándor Vajda","is_ca":false},{"name":"Dima Kozakov","is_ca":false},{"name":"Mireia Rosell","is_ca":false},{"name":"Luis Angel Rodríguez‐Lumbreras","is_ca":false},{"name":"Juan Fernández‐Recio","is_ca":false},{"name":"Agnieszka Karczyńska","is_ca":false},{"name":"Sergei Grudinin","is_ca":false},{"name":"Yumeng Yan","is_ca":false},{"name":"Hao Li","is_ca":false},{"name":"Peicong Lin","is_ca":false},{"name":"Sheng‐You Huang","is_ca":false},{"name":"Charles Christoffer","is_ca":false},{"name":"Genki Terashi","is_ca":false},{"name":"Jacob Verburgt","is_ca":false},{"name":"Daipayan Sarkar","is_ca":false},{"name":"Tunde Aderinwale","is_ca":false},{"name":"Xiao Wang","is_ca":false},{"name":"Daisuke Kihara","is_ca":false},{"name":"Tsukasa Nakamura","is_ca":false},{"name":"Yuya Hanazono","is_ca":false},{"name":"Ragul Gowthaman","is_ca":false},{"name":"Johnathan D. Guest","is_ca":false},{"name":"Rui Yin","is_ca":false},{"name":"Ghazaleh Taherzadeh","is_ca":false},{"name":"Brian G. Pierce","is_ca":false},{"name":"Didier Barradas‐Bautista","is_ca":false},{"name":"Zhen Cao","is_ca":false},{"name":"Luigi Cavallo","is_ca":false},{"name":"Romina Oliva","is_ca":false},{"name":"Yuanfei Sun","is_ca":false},{"name":"Shaowen Zhu","is_ca":false},{"name":"Yang Shen","is_ca":false},{"name":"Taeyong Park","is_ca":false},{"name":"Hyeonuk Woo","is_ca":false},{"name":"Jinsol Yang","is_ca":false},{"name":"Sohee Kwon","is_ca":false},{"name":"Jonghun Won","is_ca":false},{"name":"Chaok Seok","is_ca":false},{"name":"Yasuomi Kiyota","is_ca":false},{"name":"Shinpei Kobayashi","is_ca":false},{"name":"Yoshiki Harada","is_ca":false},{"name":"Mayuko Takeda‐Shitaka","is_ca":false},{"name":"Petras J. Kundrotas","is_ca":false},{"name":"Amar Singh","is_ca":false},{"name":"Ilya A. Vakser","is_ca":false},{"name":"Justas Dapkūnas","is_ca":false},{"name":"Kliment Olechnovič","is_ca":false},{"name":"Česlovas Venclovas","is_ca":false},{"name":"Rui Duan","is_ca":false},{"name":"Liming Qiu","is_ca":false},{"name":"Xianjin Xu","is_ca":false},{"name":"Shuang Zhang","is_ca":false},{"name":"Xiaoqin Zou","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01129118542889246,"gpt":0.204990011256002,"spread":0.1936988258271095,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01267022,0.002331733,0.001668715,0.0009952299,0.001178587,0.002021817,0.002611141,0.002012323,0.005069557],"category_scores_gemma":[0.01237264,0.0006253988,0.001643193,0.0007946055,0.0009114696,0.002621445,0.00268538,0.002854301,0.003381014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001107734,"about_ca_system_score_gemma":0.001836578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005790666,"about_ca_topic_score_gemma":0.005787046,"domain_scores_codex":[0.9940681,0.002527854,0.0002701459,0.001072294,0.001444541,0.0006170416],"domain_scores_gemma":[0.9908971,0.003801229,0.000326878,0.002576354,0.001544202,0.000854189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.01022746,0.004138894,0.07628708,0.001630622,0.002769778,0.001349018,0.0006946672,0.3933079,0.04743062,0.007440683,0.2645347,0.1901886],"study_design_scores_gemma":[0.0009552939,0.003187277,0.01607607,0.0000876812,0.0002776685,0.0005500045,0.0004300061,0.9030833,0.04860755,0.005263327,0.02134664,0.0001352218],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8957708,0.00335491,0.0381707,0.002762432,0.0008234711,0.0007643672,0.0145442,0.02475083,0.01905826],"genre_scores_gemma":[0.8126557,0.000464836,0.104198,0.001126858,0.0002021634,0.0005135524,0.07367487,0.001709742,0.005454205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01267022,"threshold_uncertainty_score":0.0670073,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095650841","doi":"10.1002/prot.24348","title":"Genome-scale prediction of proteins with long intrinsically disordered regions","year":2013,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; University of Alberta","keywords":"Proteome; Computational biology; Biology; Biogenesis; Genome; Gene; Bioinformatics; Genetics","authors":[{"name":"Zhenling Peng","is_ca":true},{"name":"Marcin J. Mizianty","is_ca":true},{"name":"Lukasz Kurgan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003483437428919523,"gpt":0.1730483056958545,"spread":0.169564868266935,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004054789,0.0006184251,0.0004657897,0.001153397,0.0003095773,0.000415595,0.0002907332,0.0004373721,0.0008364939],"category_scores_gemma":[0.0009866478,0.0001590148,0.0006427719,0.001302729,0.0001555401,0.0003907728,0.0004741333,0.0005098634,0.0005815814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000306373,"about_ca_system_score_gemma":0.0004162742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002275807,"about_ca_topic_score_gemma":0.002789604,"domain_scores_codex":[0.9998647,0.00002332344,0.000008370094,0.00005460569,0.00002864425,0.000020371],"domain_scores_gemma":[0.9995968,0.0001685347,0.00008441967,0.00003143418,0.00006590549,0.00005295761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002510836,0.0006854943,0.3137389,0.001370832,0.0007689336,0.003344975,0.0002758992,0.1650598,0.3191366,0.003456102,0.0356454,0.1540061],"study_design_scores_gemma":[0.00008083472,0.0002891906,0.1197987,0.00004089252,0.0001805719,0.0009756543,0.0001551996,0.8254234,0.04144988,0.002387183,0.009164489,0.00005403014],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9430248,0.002029407,0.03319203,0.0002800687,0.00004195443,0.00003813254,0.01654838,0.003728865,0.001116404],"genre_scores_gemma":[0.8815455,0.0009687575,0.05837687,0.00009946297,0.00002821315,0.00006638325,0.0576811,0.0002136001,0.001020156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002275807,"threshold_uncertainty_score":0.004525185,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069982947","doi":"10.1002/prot.1163","title":"Probabilistic sampling of protein conformations: New hope for brute force?","year":2001,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Conformational isomerism; Probabilistic logic; Protein structure; Sampling (signal processing); Algorithm; Protein structure prediction; Computer science; Protein secondary structure; Sequence (biology); Statistical physics; Mathematics; Artificial intelligence; Physics; Chemistry; Molecule","authors":[{"name":"Howard J. Feldman","is_ca":true},{"name":"Christopher W.V. Hogue","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01168964491533693,"gpt":0.2359132571651796,"spread":0.2242236122498427,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01356296,0.001229822,0.00259367,0.001213616,0.001568459,0.00249426,0.002772828,0.003290999,0.003280544],"category_scores_gemma":[0.04401537,0.001121517,0.001778389,0.0009568457,0.006238346,0.008563434,0.003183988,0.006774604,0.0009553801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001452661,"about_ca_system_score_gemma":0.001502546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004221076,"about_ca_topic_score_gemma":0.002810895,"domain_scores_codex":[0.9947959,0.002735761,0.0001533591,0.0008249706,0.001220615,0.000269509],"domain_scores_gemma":[0.9726059,0.02129672,0.0006395581,0.003965031,0.0009457953,0.0005470425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006305589,0.0003537262,0.006166338,0.000386939,0.0003556098,0.0001912507,0.0006774564,0.3616168,0.003809637,0.499925,0.008807188,0.1170796],"study_design_scores_gemma":[0.0001296293,0.0001468192,0.0003969508,0.00006213188,0.00002864352,0.00006927717,0.00008402563,0.5669066,0.0009868715,0.4238239,0.007288845,0.00007639349],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03087254,0.003844301,0.9477351,0.01166527,0.0004068718,0.00007371105,0.00009572856,0.0009867876,0.004319753],"genre_scores_gemma":[0.4407667,0.005045447,0.5422177,0.003767336,0.001305953,0.0005344427,0.0003644687,0.0007410477,0.005256747],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01356296,"threshold_uncertainty_score":0.07172865,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988878165","doi":"10.1002/prot.23220","title":"Ensemble modeling of protein disordered states: Experimental restraint contributions and validation","year":2011,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Statistical physics; Relaxation (psychology); Intrinsically disordered proteins; Ensemble average; Experimental data; Ensemble learning; Conformational ensembles; Ensemble forecasting; Molecular dynamics; Computer science; Physics; Biological system; Materials science; Chemistry; Computational chemistry; Mathematics; Machine learning; Nuclear magnetic resonance; Statistics; Biology","authors":[{"name":"Joseph A. Marsh","is_ca":true},{"name":"Julie D. Forman‐Kay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01047002068103368,"gpt":0.222954348474278,"spread":0.2124843277932443,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005678086,0.0007544822,0.0009676169,0.0007015076,0.000652504,0.0005173807,0.001255752,0.0006606196,0.0006825643],"category_scores_gemma":[0.01041849,0.0002893106,0.0006825858,0.0007571443,0.0004944149,0.001342023,0.000784494,0.001037481,0.0001574163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006495837,"about_ca_system_score_gemma":0.0008735895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005386953,"about_ca_topic_score_gemma":0.004809625,"domain_scores_codex":[0.9987923,0.0005556253,0.00007134955,0.0001983019,0.0003135709,0.00006884226],"domain_scores_gemma":[0.992845,0.003512298,0.0004081808,0.001494447,0.001584731,0.0001553849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001198604,0.000086922,0.006162603,0.00005882076,0.00009065297,0.00004565778,0.00009136876,0.9628826,0.005429577,0.00266448,0.0002175824,0.0221499],"study_design_scores_gemma":[0.000005331819,0.00003775135,0.0006148653,0.000007195949,0.000009982928,0.00001610618,0.000011798,0.9939483,0.004146966,0.0009766398,0.0002153184,0.000009749302],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5667474,0.0004307774,0.4302293,0.0001231033,0.00004179945,0.00005869626,0.0004109539,0.0007824273,0.00117544],"genre_scores_gemma":[0.8993108,0.0002494976,0.09890324,0.00003675196,0.00001464879,0.000115188,0.0009856487,0.00013934,0.0002448836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005678086,"threshold_uncertainty_score":0.03002894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118171500","doi":"10.1002/prot.22886","title":"Remeasuring HEWL pK <sub>a</sub> values by NMR spectroscopy: Methods, analysis, accuracy, and implications for theoretical pK <sub>a</sub> calculations","year":2010,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Free Radicals and Antioxidants","field":"Chemistry","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Chemistry; Nuclear magnetic resonance spectroscopy; Spectroscopy; Computational chemistry; Analytical Chemistry (journal); Chromatography; Physics; Stereochemistry","authors":[{"name":"Helen Webb","is_ca":false},{"name":"Barbara Mary Tynan‐Connolly","is_ca":false},{"name":"Gregory M. Lee","is_ca":true},{"name":"Damien Farrell","is_ca":false},{"name":"Fergal O’Meara","is_ca":false},{"name":"Chresten R. Søndergaard","is_ca":false},{"name":"Kaare Teilum","is_ca":false},{"name":"Chandralal M. Hewage","is_ca":false},{"name":"Lawrence P. McIntosh","is_ca":true},{"name":"Jens Erik Nielsen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009056581071874953,"gpt":0.2652517979568751,"spread":0.2561952168850001,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007046115,0.001663931,0.0008666067,0.001100456,0.0008083462,0.001626241,0.002125445,0.001171932,0.001043332],"category_scores_gemma":[0.02434858,0.0008187419,0.0005905629,0.0009876809,0.001054108,0.002801826,0.001171937,0.002471522,0.0007753726],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001374191,"about_ca_system_score_gemma":0.001210064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003241277,"about_ca_topic_score_gemma":0.00326556,"domain_scores_codex":[0.998538,0.000544845,0.0001119249,0.0002091567,0.0005399609,0.00005617493],"domain_scores_gemma":[0.9910255,0.004612908,0.0008373671,0.002189564,0.001207714,0.0001268286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000506697,0.0003929943,0.01254953,0.001165329,0.0004789183,0.0003067857,0.0008462328,0.4536967,0.2326276,0.04596402,0.004833004,0.2466322],"study_design_scores_gemma":[0.00003249304,0.00008100303,0.00329881,0.0000799798,0.00004619517,0.0001223308,0.0001087398,0.8614329,0.1070506,0.02291638,0.004714531,0.0001160501],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.05024914,0.0009429575,0.9450548,0.0005241806,0.0000946505,0.000057879,0.0002766345,0.00171038,0.00108948],"genre_scores_gemma":[0.2207526,0.00153387,0.7747942,0.0001749536,0.00004857391,0.000257095,0.0004219206,0.001105571,0.0009112009],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007046115,"threshold_uncertainty_score":0.03726387,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2003690049","doi":"10.1002/prot.10504","title":"Docking studies and model development of tea polyphenol proteasome inhibitors: Applications to rational drug design","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Docking (animal); Chemistry; Stereochemistry; Proteasome; Threonine; Scissile bond; Serine; Active site; Polyphenol; Biochemistry; Enzyme","authors":[{"name":"David M. Smith","is_ca":false},{"name":"Kenyon G. Daniel","is_ca":false},{"name":"Zhigang Wang","is_ca":true},{"name":"Wayne C. Guida","is_ca":false},{"name":"Tak Hang Chan","is_ca":true},{"name":"Q. Ping Dou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02279429408638839,"gpt":0.2508220656880583,"spread":0.2280277716016699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004178323,0.001145782,0.001287768,0.0005802233,0.0004065892,0.0008574222,0.0009425635,0.0008752362,0.002760367],"category_scores_gemma":[0.0008517604,0.000567763,0.0008229025,0.0005786541,0.0003519897,0.0005190767,0.0004313921,0.0007044751,0.0004955971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009185287,"about_ca_system_score_gemma":0.001108064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007257691,"about_ca_topic_score_gemma":0.005816266,"domain_scores_codex":[0.9998636,0.00005630033,0.000006941221,0.0000182154,0.00003630858,0.0000185646],"domain_scores_gemma":[0.9998063,0.0001162245,0.00002218663,0.000008907037,0.00002906518,0.00001732812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00005970177,0.00002907388,0.0002246063,0.00006886241,0.00002837426,0.00006397038,0.00001481725,0.9918185,0.001572857,0.003034448,0.0002225636,0.002862189],"study_design_scores_gemma":[0.00003409482,0.00004405454,0.00005442065,0.000007815276,0.00001161004,0.000009850176,0.00001137209,0.9969888,0.0008451389,0.001202475,0.0007844406,0.000006012937],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3932695,0.004227535,0.5643868,0.001502129,0.0001745264,0.0004728272,0.002009259,0.001978976,0.03197847],"genre_scores_gemma":[0.829021,0.003848747,0.1594505,0.000177576,0.00004020203,0.0008522748,0.001304707,0.0001967154,0.005108263],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007257691,"threshold_uncertainty_score":0.01443094,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155361286","doi":"10.1002/prot.22305","title":"Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"Fudan University","keywords":"Chemistry; Fibril; Nucleation; Molecular dynamics; Kinetics; Peptide; Biophysics; Amyloid (mycology); Crystallography; Biochemistry; Computational chemistry; Biology","authors":[{"name":"Yan Lü","is_ca":false},{"name":"Philippe Derreumaux","is_ca":false},{"name":"Zhi Guo","is_ca":false},{"name":"Normand Mousseau","is_ca":true},{"name":"Guanghong Wei","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01728095118054731,"gpt":0.2469652567553455,"spread":0.2296843055747982,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000187351,0.0002191617,0.0002048084,0.0002712035,0.0004118583,0.0003479676,0.000236107,0.0002121803,0.0009661553],"category_scores_gemma":[0.0006798689,0.0002596071,0.0002817682,0.0002001993,0.0005569389,0.0005335102,0.0002411486,0.0003657948,0.0001157958],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000630527,"about_ca_system_score_gemma":0.0004663768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004202533,"about_ca_topic_score_gemma":0.003489788,"domain_scores_codex":[0.9999219,0.00001229426,0.000004822018,0.00001699291,0.00002428461,0.00001970112],"domain_scores_gemma":[0.9998605,0.00005257309,0.00002248629,0.00001270552,0.00003047791,0.00002112583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004440764,0.0002477009,0.02998261,0.0001919885,0.0002181673,0.0004429601,0.0005153216,0.6834304,0.263067,0.007594618,0.000622562,0.0132426],"study_design_scores_gemma":[0.00003805626,0.0002087867,0.04006026,0.00001551761,0.00004036516,0.0001251357,0.000125422,0.9105842,0.04409293,0.003601528,0.001044321,0.00006347233],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996784,0.000115584,0.002054554,0.00003370081,0.000005252238,0.000009209388,0.0001116716,0.00003402322,0.0008521054],"genre_scores_gemma":[0.9987584,0.0001126651,0.0006237663,0.000008404722,0.000001815719,0.00002182761,0.0002088672,0.00001791507,0.0002463626],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004202533,"threshold_uncertainty_score":0.008356154,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2767509030","doi":"10.1002/prot.25419","title":"The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment","year":2017,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"CASP; Template; Computer science; Protein Data Bank (RCSB PDB); Computational biology; Protein structure prediction; Protein structure; Chemistry; Biology; Biochemistry; Programming language","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Sameer Velankar","is_ca":false},{"name":"Minkyung Baek","is_ca":false},{"name":"Lim Heo","is_ca":false},{"name":"Chaok Seok","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01250735590530209,"gpt":0.2431435335491241,"spread":0.230636177643822,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02651798,0.002680571,0.002084027,0.001240034,0.001520063,0.002982103,0.002980273,0.002041864,0.002652752],"category_scores_gemma":[0.03479937,0.0007150134,0.001805382,0.001458881,0.001191964,0.002634102,0.003219265,0.003222889,0.001702377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00166997,"about_ca_system_score_gemma":0.002051398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005963745,"about_ca_topic_score_gemma":0.004494515,"domain_scores_codex":[0.9825777,0.009291367,0.0008978134,0.002268933,0.004112216,0.0008520162],"domain_scores_gemma":[0.9748478,0.01206468,0.001089949,0.006951465,0.004004911,0.001041315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004052053,0.0008430621,0.05218684,0.001433943,0.001801075,0.001279209,0.001290286,0.7409629,0.0319229,0.009585095,0.05430683,0.1003358],"study_design_scores_gemma":[0.0002075357,0.0007239385,0.009099143,0.0001281143,0.0001565667,0.0005442842,0.0003823015,0.9361518,0.03521873,0.00600878,0.01126671,0.0001121772],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7757108,0.003647098,0.1780036,0.002987581,0.0005853627,0.000466728,0.007461516,0.01848185,0.01265555],"genre_scores_gemma":[0.8823302,0.0005080905,0.09252507,0.0004504664,0.00009963282,0.0003136497,0.01924282,0.002732956,0.001797157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02651798,"threshold_uncertainty_score":0.1402421,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977896619","doi":"10.1002/prot.10611","title":"Missense mutations in transmembrane domains of proteins: Phenotypic propensity of polar residues for human disease","year":2004,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Missense mutation; Transmembrane domain; Transmembrane protein; Biology; Membrane protein; Genetics; Protein structure; Biochemistry; Mutation; Phenotype; Amino acid; Gene; Chemistry; Membrane","authors":[{"name":"Anthony W. Partridge","is_ca":true},{"name":"Alex G. Therien","is_ca":true},{"name":"Charles M. Deber","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01110367083506009,"gpt":0.2271495258586634,"spread":0.2160458550236033,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003888117,0.0002642328,0.0002696603,0.0009485707,0.0002079923,0.00025353,0.0001033906,0.0003579202,0.001696897],"category_scores_gemma":[0.0009256274,0.0000680678,0.0002514113,0.0006733557,0.0002601294,0.0001407703,0.0003608731,0.0001771651,0.000240572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006725912,"about_ca_system_score_gemma":0.00008347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001661614,"about_ca_topic_score_gemma":0.0002624257,"domain_scores_codex":[0.9996692,0.00008650325,0.00004192553,0.0001067742,0.00006654146,0.00002912331],"domain_scores_gemma":[0.9993541,0.0002540732,0.0002318943,0.00005032779,0.00003488445,0.00007466734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001837152,0.0001237538,0.3598756,0.0002280427,0.0002632088,0.004431238,0.0002965302,0.001226717,0.6064233,0.0003925231,0.0002327957,0.02466917],"study_design_scores_gemma":[0.00001794991,0.0003687956,0.934329,0.00002707819,0.0001339184,0.01972324,0.0002477413,0.002201739,0.04106271,0.0003869883,0.001480599,0.00002031053],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985672,0.0002518675,0.0007238198,0.00001068435,0.000003508502,0.000004570933,0.0002289912,0.0000145045,0.0001949216],"genre_scores_gemma":[0.9990388,0.00008439402,0.0005234508,0.00000882751,0.000003280523,0.00000295116,0.0002485657,0.00000488694,0.00008479289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001696897,"threshold_uncertainty_score":0.005676627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974075455","doi":"10.1002/prot.10414","title":"Atoms‐in‐molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation‐induced changes in protein stability and genetic coding","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Chemistry; van der Waals force; Side chain; Molecule; Computational chemistry; Atoms in molecules; Charge (physics); Chemical physics; Thermodynamics; Physics; Quantum mechanics; Polymer; Organic chemistry","authors":[{"name":"Chérif F. Matta","is_ca":true},{"name":"Richard F. W. Bader","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01610989239390051,"gpt":0.2076259677711443,"spread":0.1915160753772437,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003657495,0.0002279618,0.0002106678,0.000389971,0.0002161701,0.0002492589,0.0003706948,0.000327075,0.0009053641],"category_scores_gemma":[0.0009784512,0.0001358293,0.0002173694,0.0003108149,0.000945135,0.0005858107,0.0002792,0.0009683689,0.0001535896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003770264,"about_ca_system_score_gemma":0.0001529705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004519183,"about_ca_topic_score_gemma":0.0002616677,"domain_scores_codex":[0.999816,0.00003301989,0.000005305575,0.00003671185,0.00009164716,0.00001722484],"domain_scores_gemma":[0.9995942,0.000210256,0.00007980394,0.00005774386,0.00004259621,0.00001550865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001772877,0.00008962441,0.005405631,0.0001714774,0.00004919609,0.0001322154,0.000136138,0.01059851,0.9499198,0.02072471,0.0001137304,0.01248163],"study_design_scores_gemma":[0.00001398677,0.0005042424,0.02203625,0.00001320747,0.00002172101,0.0003765575,0.0001933803,0.07780083,0.8837449,0.01143994,0.003816221,0.00003881539],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9377772,0.002629291,0.05499588,0.0001789757,0.00003999205,0.00003989244,0.0001788138,0.00008601644,0.00407392],"genre_scores_gemma":[0.988117,0.0008530948,0.01009875,0.00003321625,0.00001719493,0.00002933743,0.0001077555,0.00001644915,0.0007272959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009053641,"threshold_uncertainty_score":0.00302875,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995864101","doi":"10.1002/prot.10150","title":"Simple sequences are rare in the Protein Data Bank","year":2002,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Protein Data Bank (RCSB PDB); Protein Data Bank; Simple (philosophy); Sequence (biology); Sequence database; Biology; Protein sequencing; Computational biology; Sequence alignment; Protein structure database; Peptide sequence; Protein structure; Bioinformatics; Genetics; Biochemistry; Gene","authors":[{"name":"Melanie A. Huntley","is_ca":true},{"name":"G. Brian Golding","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01711177448531652,"gpt":0.2265372435001332,"spread":0.2094254690148167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003092868,0.001037738,0.001977876,0.004335043,0.001268403,0.002654457,0.001455326,0.001476457,0.01498099],"category_scores_gemma":[0.01274993,0.0008753401,0.0006220559,0.01263428,0.0008511912,0.00320661,0.00172435,0.001420197,0.02095909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001174619,"about_ca_system_score_gemma":0.002498265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001311765,"about_ca_topic_score_gemma":0.002405721,"domain_scores_codex":[0.9962851,0.0005805855,0.000817381,0.0006421564,0.001471311,0.0002035602],"domain_scores_gemma":[0.9879732,0.002791888,0.003026965,0.003894408,0.001718467,0.0005950579],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.007261875,0.0008133765,0.09632204,0.009971648,0.001297956,0.006661858,0.001466862,0.00364375,0.1204977,0.04585836,0.3731323,0.3330722],"study_design_scores_gemma":[0.0003000892,0.0003843016,0.0388156,0.0006091614,0.0003638519,0.006943282,0.0003440094,0.005666846,0.02241049,0.02192735,0.90207,0.0001650432],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.246355,0.02510137,0.1147781,0.005356612,0.002600387,0.0009171465,0.4834307,0.05915377,0.06230688],"genre_scores_gemma":[0.1660587,0.008095038,0.08597057,0.002246176,0.0003280656,0.0004276239,0.7238863,0.002023913,0.01096374],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01498099,"threshold_uncertainty_score":0.05011642,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104681220","doi":"10.1002/prot.22140","title":"The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"McGill University; Université Laval; Hôtel-Dieu de Québec","funders":"National Institute of General Medical Sciences; National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"PHD finger; H3K4me3; Histone code; Histone methylation; Histone H2A; Histone acetyltransferase; Histone H1; Chromatin; Histone deacetylase 2; Histone H3; Histone octamer; Chemistry; Histone; Chromatin remodeling; Histone methyltransferase; Nucleosome; SAP30; Epigenomics; Cell biology; Biology; Biochemistry; Zinc finger; Histone deacetylase; DNA methylation; Transcription factor; Promoter; Gene expression; Gene","authors":[{"name":"Karen S. Champagne","is_ca":false},{"name":"Nehmé Saksouk","is_ca":true},{"name":"Pedro V. Peña","is_ca":false},{"name":"Kyle Johnson","is_ca":false},{"name":"Mukta Ullah","is_ca":true},{"name":"Xiang‐Jiao Yang","is_ca":true},{"name":"Jacques Côté","is_ca":true},{"name":"Tatiana G. Kutateladze","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007606657227627412,"gpt":0.1962631606104568,"spread":0.1886565033828294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003313175,0.0007268224,0.0007788423,0.0002295492,0.001092651,0.000960944,0.001636527,0.0006034384,0.004370095],"category_scores_gemma":[0.000446937,0.0003584255,0.0002402339,0.0004692119,0.0004047332,0.0005400412,0.0006060099,0.001735095,0.0004790652],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00222073,"about_ca_system_score_gemma":0.001165204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01463432,"about_ca_topic_score_gemma":0.01960661,"domain_scores_codex":[0.9996448,0.00001614299,0.000009891754,0.00006414929,0.000210403,0.00005454923],"domain_scores_gemma":[0.9998556,0.00002810599,0.00002217065,0.000004849895,0.00002710001,0.00006221875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.007220962,0.002318102,0.03264304,0.003816522,0.001298102,0.009470147,0.001509659,0.04012451,0.6800658,0.01212403,0.0976366,0.1117726],"study_design_scores_gemma":[0.001843411,0.001959629,0.08946242,0.0003568011,0.0007540042,0.004192184,0.002325127,0.2318994,0.4835147,0.003900474,0.1793682,0.0004237296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9560713,0.01331504,0.008133497,0.001437077,0.0004463718,0.0001392804,0.004231872,0.0009624221,0.01526321],"genre_scores_gemma":[0.9593781,0.005115582,0.009514445,0.0005207297,0.0001139311,0.00007851765,0.01429746,0.0001373784,0.01084388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01463432,"threshold_uncertainty_score":0.02909827,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160472383","doi":"10.1002/prot.10263","title":"Origins of protein denatured state compactness and hydrophobic clustering in aqueous urea: Inferences from nonpolar potentials of mean force","year":2002,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Serbian Academy of Sciences and Arts","keywords":"Urea; Aqueous solution; Chemistry; Hydrophobic effect; Potential of mean force; Random coil; Denaturation (fissile materials); Solvent; Chaotropic agent; Thermodynamics; Heat capacity; Chemical physics; Molecular dynamics; Crystallography; Organic chemistry; Computational chemistry","authors":[{"name":"Seishi Shimizu","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006067843792665317,"gpt":0.1985460533340534,"spread":0.1924782095413881,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000367626,0.0004009811,0.0003488774,0.000497459,0.0004716231,0.0003797055,0.000311439,0.0004158847,0.0004777559],"category_scores_gemma":[0.001527318,0.0002359202,0.0003180129,0.000275165,0.0006966594,0.0005690701,0.0004442512,0.000370154,0.00007334375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005374725,"about_ca_system_score_gemma":0.0002855961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002865905,"about_ca_topic_score_gemma":0.002084997,"domain_scores_codex":[0.9999431,0.0000185794,0.000002791912,0.000006593489,0.00001464149,0.00001422838],"domain_scores_gemma":[0.9996934,0.0001781181,0.00004092393,0.00001431696,0.00003262513,0.00004062823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005399827,0.0001457245,0.01954514,0.000166802,0.00009191041,0.0007110456,0.0004993725,0.8090633,0.1487564,0.01310758,0.0001915945,0.007181162],"study_design_scores_gemma":[0.00003954649,0.0001477089,0.007460427,0.00001329686,0.0000180772,0.00004800469,0.0001262844,0.9720429,0.01541104,0.004484853,0.0001881867,0.00001960096],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964362,0.00009218682,0.002759356,0.00004480513,0.000002939638,0.000010397,0.0000212554,0.00001794417,0.0006147946],"genre_scores_gemma":[0.9991623,0.00007150169,0.000625441,0.000006041663,0.00000169701,0.00001626072,0.00002750394,0.00000924493,0.0000800116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002865905,"threshold_uncertainty_score":0.005698442,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110697653","doi":"10.1002/prot.21311","title":"Locating missing water molecules in protein cavities by the three‐dimensional reference interaction site model theory of molecular solvation","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"","keywords":"Solvation; Molecule; Molecular dynamics; Molecular model; Molecular orbital theory; Water model; Solvation shell; Chemical physics; Chemistry; Statistical physics; Physics; Computational chemistry; Biological system; Molecular orbital; Quantum mechanics; Stereochemistry; Biology","authors":[{"name":"Takashi Imai","is_ca":false},{"name":"Ryusuke Hiraoka","is_ca":false},{"name":"Andriy Kovalenko","is_ca":true},{"name":"Fumio Hirata","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006274285532583817,"gpt":0.2008308579301203,"spread":0.1945565723975365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005118174,0.0003647338,0.00065133,0.0004400539,0.0004058162,0.000479358,0.001511708,0.001040842,0.0005709602],"category_scores_gemma":[0.0009627205,0.0002801586,0.0008654786,0.000312533,0.00108809,0.001220308,0.0007656735,0.0005900318,0.0002069015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005426358,"about_ca_system_score_gemma":0.0007042123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001454273,"about_ca_topic_score_gemma":0.000673549,"domain_scores_codex":[0.9998333,0.00006406748,0.000005868438,0.00002100394,0.00005713412,0.00001864354],"domain_scores_gemma":[0.9997825,0.00008708023,0.00003772691,0.00003644749,0.00003213689,0.0000240042],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00010998,0.00004785547,0.0008299277,0.00009346871,0.00004169529,0.000426883,0.0001954054,0.7674946,0.01868375,0.2015386,0.0007574754,0.009780516],"study_design_scores_gemma":[0.00001369169,0.00001848245,0.00007029462,0.000002455126,0.00000416091,0.00002150915,0.000008744148,0.9826761,0.0006860557,0.01622293,0.0002668863,0.000008659089],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2314289,0.0007517118,0.7627414,0.0006486931,0.00007592143,0.00004047339,0.00006065303,0.0003757817,0.003876428],"genre_scores_gemma":[0.8796689,0.0009722844,0.1157844,0.0001625909,0.0000640937,0.000252116,0.0001164139,0.0001293846,0.002849851],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001511708,"threshold_uncertainty_score":0.003937125,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171325548","doi":"10.1002/prot.10340","title":"Data mining crystallization databases: Knowledge‐based approaches to optimize protein crystal screens","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research","keywords":"Crystallization; Protein crystallization; Bottleneck; Nucleation; Database; Proteomics; Crystal (programming language); Computer science; Data mining; Computational biology; Crystallography; Chemistry; Biology; Biochemistry","authors":[{"name":"Matthew S. Kimber","is_ca":false},{"name":"François Vallée","is_ca":false},{"name":"Simon Houston","is_ca":false},{"name":"Alexander Nečakov","is_ca":false},{"name":"T. Skarina","is_ca":true},{"name":"E. Evdokimova","is_ca":true},{"name":"Steven Beasley","is_ca":true},{"name":"Dinesh Christendat","is_ca":true},{"name":"Alexei Savchenko","is_ca":true},{"name":"C.H. Arrowsmith","is_ca":true},{"name":"Masoud Vedadi","is_ca":false},{"name":"Mark Gerstein","is_ca":false},{"name":"A.M. Edwards","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1004926654413479,"gpt":0.2570565720959526,"spread":0.1565639066546048,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01148772,0.002965489,0.004158633,0.01177217,0.001537736,0.005632166,0.006107227,0.002204838,0.00377688],"category_scores_gemma":[0.03613519,0.001624326,0.002912988,0.01180376,0.0007880225,0.004363888,0.003157458,0.002456422,0.002919558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001471038,"about_ca_system_score_gemma":0.002783747,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004006509,"about_ca_topic_score_gemma":0.00676035,"domain_scores_codex":[0.9939501,0.001967621,0.001320762,0.001000769,0.001547939,0.0002127534],"domain_scores_gemma":[0.9817452,0.01141849,0.001201846,0.003145688,0.00202703,0.000461862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002378507,0.002305349,0.01732512,0.007592474,0.002158861,0.001317081,0.0007962739,0.09353271,0.01456093,0.03183339,0.1302808,0.6959185],"study_design_scores_gemma":[0.0009870924,0.0005040983,0.005406357,0.001052781,0.001022358,0.001167645,0.001022722,0.723499,0.02520026,0.1057708,0.134027,0.0003398723],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.02135498,0.004246933,0.8245066,0.002413153,0.0002693804,0.002493014,0.07842272,0.06136671,0.004926621],"genre_scores_gemma":[0.04286174,0.002378821,0.8652104,0.0004131198,0.00009155023,0.002092537,0.08525502,0.001001307,0.0006956361],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01177217,"threshold_uncertainty_score":0.06075358,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097271989","doi":"10.1002/prot.24356","title":"Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions","year":2013,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Defense Threat Reduction Agency; National Institute of General Medical Sciences; Cancer Research UK; Howard Hughes Medical Institute","keywords":"Library science; Protein chemistry; Chemistry; Computer science; Biochemistry","authors":[{"name":"Rocco Moretti","is_ca":false},{"name":"Sarel J. Fleishman","is_ca":false},{"name":"Rudi Agius","is_ca":false},{"name":"Mieczyslaw Torchala","is_ca":false},{"name":"Paul A. Bates","is_ca":false},{"name":"Panagiotis L. Kastritis","is_ca":false},{"name":"João Rodrigues","is_ca":false},{"name":"Mikaël Trellet","is_ca":false},{"name":"Alexandre M. J. J. Bonvin","is_ca":false},{"name":"Meng Cui","is_ca":false},{"name":"Marianne Rooman","is_ca":false},{"name":"Dimitri Gillis","is_ca":false},{"name":"Yves Dehouck","is_ca":false},{"name":"Iain H. Moal","is_ca":false},{"name":"Miguel Romero‐Durana","is_ca":false},{"name":"Laura Pérez‐Cano","is_ca":false},{"name":"Chiara Pallara","is_ca":false},{"name":"Brian Jiménez‐García","is_ca":false},{"name":"Juan Fernández‐Recio","is_ca":false},{"name":"Samuel Coulbourn Flores","is_ca":false},{"name":"Michael S. Pacella","is_ca":false},{"name":"Krishna Praneeth Kilambi","is_ca":false},{"name":"Jeffrey J. Gray","is_ca":false},{"name":"Petr Popov","is_ca":false},{"name":"Sergei Grudinin","is_ca":false},{"name":"Juan Esquivel‐Rodríguez","is_ca":false},{"name":"Daisuke Kihara","is_ca":false},{"name":"Nan Zhao","is_ca":false},{"name":"Dmitry Korkin","is_ca":false},{"name":"Xiaolei Zhu","is_ca":false},{"name":"Omar Demerdash","is_ca":false},{"name":"Julie C. Mitchell","is_ca":false},{"name":"Eiji Kanamori","is_ca":false},{"name":"Yuko Tsuchiya","is_ca":false},{"name":"Haruki Nakamura","is_ca":false},{"name":"Hasup Lee","is_ca":false},{"name":"Hahnbeom Park","is_ca":false},{"name":"Chaok Seok","is_ca":false},{"name":"Jamica Sarmiento","is_ca":false},{"name":"Shide Liang","is_ca":false},{"name":"Shunsuke Teraguchi","is_ca":false},{"name":"Daron M. Standley","is_ca":false},{"name":"Hiromitsu Shimoyama","is_ca":false},{"name":"Genki Terashi","is_ca":false},{"name":"Mayuko Takeda‐Shitaka","is_ca":false},{"name":"Mitsuo Iwadate","is_ca":false},{"name":"Hideaki Umeyama","is_ca":false},{"name":"Dmitri Beglov","is_ca":false},{"name":"David Hall","is_ca":false},{"name":"Dima Kozakov","is_ca":false},{"name":"Sándor Vajda","is_ca":false},{"name":"Brian G. Pierce","is_ca":false},{"name":"Howook Hwang","is_ca":false},{"name":"Thom Vreven","is_ca":false},{"name":"Zhiping Weng","is_ca":false},{"name":"Yangyu Huang","is_ca":false},{"name":"Haotian Li","is_ca":false},{"name":"Xiufeng Yang","is_ca":false},{"name":"Xiaofeng Ji","is_ca":false},{"name":"Shiyong Liu","is_ca":false},{"name":"Yi Xiao","is_ca":false},{"name":"Martin Zacharias","is_ca":false},{"name":"Sanbo Qin","is_ca":false},{"name":"Huan‐Xiang Zhou","is_ca":false},{"name":"Sheng‐You Huang","is_ca":false},{"name":"Xiaoqin Zou","is_ca":false},{"name":"Sameer Velankar","is_ca":false},{"name":"Joël Janin","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true},{"name":"David Baker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01706184217565264,"gpt":0.3067825654959474,"spread":0.2897207233202947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.04594436,0.002985471,0.001646699,0.004651793,0.001352167,0.001218395,0.002762267,0.00272317,0.00062533],"category_scores_gemma":[0.05061565,0.0004322232,0.001319228,0.001750498,0.001189846,0.002128082,0.002782924,0.001764067,0.0002775638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00143153,"about_ca_system_score_gemma":0.002164588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005899133,"about_ca_topic_score_gemma":0.00525297,"domain_scores_codex":[0.9832453,0.01061544,0.0006191531,0.002028715,0.003008903,0.0004825325],"domain_scores_gemma":[0.934118,0.04731135,0.001919362,0.004699121,0.01025459,0.001697619],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.002091418,0.001996314,0.09013889,0.0009830702,0.003392791,0.0002129719,0.0003751783,0.6257659,0.006930077,0.003489436,0.004734261,0.2598897],"study_design_scores_gemma":[0.0001398972,0.0006097847,0.004511815,0.00004395115,0.0001471425,0.0000887929,0.00009271366,0.9888897,0.002765366,0.002107797,0.0005637455,0.00003925043],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7276372,0.006449638,0.2535299,0.001503932,0.0002803542,0.0007262724,0.001532514,0.003835124,0.004504965],"genre_scores_gemma":[0.8597199,0.0006203036,0.1358587,0.0002418356,0.00006681943,0.0002609486,0.00259985,0.0001867478,0.0004448231],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9540557,"threshold_uncertainty_score":0.2429799,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1893315717","doi":"10.1002/prot.24576","title":"Assessment of fully automated antibody homology modeling protocols in molecular operating environment","year":2014,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Group for Research in Decision Analysis","funders":"","keywords":"Computer science; Template; Hypervariable region; Homology modeling; Computational biology; Antibody; Loop modeling; Loop (graph theory); Chemistry; Biology; Programming language; Immunology; Mathematics","authors":[{"name":"Johannes Maier","is_ca":true},{"name":"Paul Labute","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01432137181064668,"gpt":0.3183991745202934,"spread":0.3040778027096467,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006593347,0.0009350593,0.000626025,0.0006090773,0.0008777827,0.00129708,0.002863439,0.0009732103,0.005627697],"category_scores_gemma":[0.01612712,0.0004421923,0.000655239,0.0007529624,0.000318704,0.002025955,0.001022611,0.001043535,0.001412729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001254692,"about_ca_system_score_gemma":0.003675403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004094055,"about_ca_topic_score_gemma":0.002638892,"domain_scores_codex":[0.9967619,0.001226041,0.0002224917,0.0002568314,0.00129154,0.0002412965],"domain_scores_gemma":[0.989961,0.004423631,0.0004179838,0.002294294,0.002626666,0.0002762974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002421987,0.001700278,0.006461948,0.0006136757,0.0002899028,0.0002683857,0.0004500653,0.535883,0.05051775,0.02589665,0.01074706,0.3647493],"study_design_scores_gemma":[0.0001016578,0.0003704309,0.001185128,0.00003351361,0.00003371293,0.00006286392,0.00007552956,0.9516616,0.03486142,0.005176307,0.006396942,0.00004086742],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2620922,0.0005540468,0.7023049,0.0005059199,0.0001449211,0.001070575,0.002116256,0.02208157,0.009129658],"genre_scores_gemma":[0.4878457,0.0004806213,0.5034773,0.00009852323,0.00002126293,0.001282241,0.003317261,0.00177406,0.001703067],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006593347,"threshold_uncertainty_score":0.03486937,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1907442748","doi":"10.1002/prot.24678","title":"Score_set: A CAPRI benchmark for scoring protein complexes","year":2014,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":90,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche","keywords":"Docking (animal); Benchmark (surveying); Computer science; Data mining; Machine learning; Medicine; Geography","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01269396732050347,"gpt":0.239466791271349,"spread":0.2267728239508456,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01143293,0.00647794,0.003440085,0.007008343,0.002263199,0.004005023,0.007401543,0.002720593,0.009866756],"category_scores_gemma":[0.02603381,0.001151191,0.003307125,0.007728974,0.001090931,0.002494515,0.004829444,0.003176011,0.007009017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002525094,"about_ca_system_score_gemma":0.00335872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008275875,"about_ca_topic_score_gemma":0.007335913,"domain_scores_codex":[0.9881294,0.004433071,0.001342303,0.001160974,0.004291986,0.0006423275],"domain_scores_gemma":[0.9887177,0.005728988,0.0007193042,0.001930033,0.002172767,0.0007312192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002793514,0.001570954,0.01789319,0.006783617,0.002650684,0.0007952967,0.000390291,0.2109396,0.01036318,0.01895183,0.5973946,0.1294733],"study_design_scores_gemma":[0.00123935,0.001528425,0.01005906,0.0004637007,0.000415426,0.001204517,0.000253793,0.7829549,0.0225231,0.01858144,0.1604606,0.0003157275],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.2390511,0.02366373,0.2307201,0.003190747,0.001933117,0.00356389,0.2510441,0.1694116,0.07742169],"genre_scores_gemma":[0.1996776,0.004664117,0.2356959,0.0008736353,0.0001995019,0.004040826,0.5339658,0.01453727,0.006345455],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01143293,"threshold_uncertainty_score":0.06046385,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140340353","doi":"10.1002/prot.20127","title":"Complex folding pathways in a simple β‐hairpin","year":2004,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Regroupement Québécois sur les Matériaux de Pointe","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Protein folding; Downhill folding; Reptation; Molecular dynamics; Folding (DSP implementation); Lattice protein; Hydrogen bond; Chemical physics; Chemistry; Statistical physics; Molecular biophysics; Computational chemistry; Physics; Biological system; Phi value analysis; Molecule; Biology; Quantum mechanics","authors":[{"name":"Guanghong Wei","is_ca":true},{"name":"Normand Mousseau","is_ca":true},{"name":"Philippe Derreumaux","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01025151693632589,"gpt":0.2162538254942753,"spread":0.2060023085579494,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000149864,0.0002523395,0.0001978581,0.0002236674,0.0002962894,0.0004148489,0.0002025396,0.0003932943,0.0008912804],"category_scores_gemma":[0.0003054902,0.00018324,0.0004622682,0.0001776846,0.0003079109,0.0004172352,0.0002061532,0.0002944777,0.0001091039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002371893,"about_ca_system_score_gemma":0.0002500756,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009070591,"about_ca_topic_score_gemma":0.000610018,"domain_scores_codex":[0.9999384,0.00001202155,0.000004259843,0.00001883651,0.0000138794,0.0000126823],"domain_scores_gemma":[0.9999106,0.00002836618,0.00002283048,0.00001357277,0.00001069791,0.00001381312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008731166,0.0003661606,0.02239156,0.000365094,0.0002421204,0.001666887,0.001390669,0.336534,0.5686526,0.0404971,0.0005936038,0.02642705],"study_design_scores_gemma":[0.000129169,0.001034232,0.0320127,0.00006649119,0.000118153,0.00143211,0.0004439028,0.831041,0.08923723,0.03952075,0.004816673,0.0001476404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930316,0.0001437113,0.006035912,0.00001995205,0.000004146451,0.00001769813,0.00007551624,0.00004224873,0.0006291325],"genre_scores_gemma":[0.9902753,0.0001660022,0.008937606,0.00001164883,0.00000123454,0.00002586195,0.0001453587,0.0000159976,0.0004210735],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009070591,"threshold_uncertainty_score":0.002981603,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147568004","doi":"10.1002/prot.10108","title":"Anti‐cooperativity and cooperativity in hydrophobic interactions: Three‐body free energy landscapes and comparison with implicit‐solvent potential functions for proteins","year":2002,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Cooperativity; Chemistry; Solvent models; Potential of mean force; Molecular dynamics; Energy landscape; Thermodynamics; Hydrophobic effect; Chemical physics; Solvent; Accessible surface area; Computational chemistry; Statistical physics; Physics; Organic chemistry; Solvation","authors":[{"name":"Seishi Shimizu","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006329224673341593,"gpt":0.2121875734988365,"spread":0.2058583488254949,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006068127,0.0005516189,0.0005440419,0.0006219092,0.0003950344,0.0005372301,0.0005632999,0.0006509803,0.0006195404],"category_scores_gemma":[0.002229375,0.0001642047,0.0004545565,0.0005348529,0.0005870274,0.0007205083,0.0003924065,0.0004188326,0.00007522008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005061352,"about_ca_system_score_gemma":0.0002954494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001585621,"about_ca_topic_score_gemma":0.001037215,"domain_scores_codex":[0.9998769,0.00005816432,0.000004709623,0.000008498585,0.00003421838,0.00001752924],"domain_scores_gemma":[0.9988586,0.0008850218,0.00007712119,0.00005654621,0.00006658084,0.0000561432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002608753,0.0001221257,0.004024364,0.0000985393,0.00006399233,0.0001721021,0.0001228223,0.9647446,0.01096301,0.01047851,0.0001624767,0.008786503],"study_design_scores_gemma":[0.00001914089,0.00005678097,0.001345036,0.000005958485,0.00000868704,0.00003129046,0.00003420661,0.9925443,0.001779318,0.004028719,0.0001358321,0.00001076903],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9773691,0.0006869285,0.01982068,0.0001819169,0.000009729937,0.00002160126,0.00005745776,0.00008399573,0.00176854],"genre_scores_gemma":[0.9951962,0.0002306543,0.004271984,0.00001582934,0.00000420944,0.00003035188,0.00005417804,0.00002407414,0.0001725912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001585621,"threshold_uncertainty_score":0.003672242,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148471287","doi":"10.1002/prot.22375","title":"On the relation between residue flexibility and local solvent accessibility in proteins","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Correlation; Residue (chemistry); Positive correlation; Mathematics; Context (archaeology); Flexibility (engineering); Chemistry; Biological system; Statistics; Geometry; Biology; Organic chemistry","authors":[{"name":"Hua Zhang","is_ca":true},{"name":"Tuo Zhang","is_ca":true},{"name":"Ke Chen","is_ca":true},{"name":"Shiyi Shen","is_ca":false},{"name":"Jishou Ruan","is_ca":false},{"name":"Lukasz Kurgan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.010269681171047,"gpt":0.241677836830556,"spread":0.231408155659509,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001099909,0.0004974154,0.0003552299,0.001305528,0.0002519469,0.0004326803,0.0002112699,0.0003852961,0.0004314277],"category_scores_gemma":[0.004550218,0.0001695282,0.00034523,0.00116899,0.0007638289,0.0007647371,0.0003568085,0.0003741933,0.0001447708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002310181,"about_ca_system_score_gemma":0.00021504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001847963,"about_ca_topic_score_gemma":0.001522003,"domain_scores_codex":[0.999638,0.000102121,0.00002119609,0.0001105973,0.00008668553,0.00004147825],"domain_scores_gemma":[0.9957866,0.003136694,0.0006391588,0.0001815963,0.0001585315,0.00009747453],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000685541,0.0002026903,0.314924,0.0002849327,0.0003401428,0.001317938,0.0005002663,0.4626849,0.110951,0.006559936,0.0003359675,0.1012126],"study_design_scores_gemma":[0.00001028405,0.0005045808,0.181687,0.00002815206,0.00007006629,0.0009425669,0.0001485897,0.785613,0.02082922,0.00967604,0.0003979651,0.00009266956],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9468461,0.0009434762,0.05090041,0.00006845026,0.000004620633,0.00001342642,0.000071202,0.0001027529,0.001049655],"genre_scores_gemma":[0.9947994,0.0001975845,0.0048547,0.000005630264,0.000006596629,0.000004892955,0.00005197897,0.000008645911,0.00007057601],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001847963,"threshold_uncertainty_score":0.005816996,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031464903","doi":"10.1002/prot.22919","title":"Structures of parasitic CDPK domains point to a common mechanism of activation","year":2010,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Signaling Pathways in Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Structural Genomics Consortium","funders":"Structural Genomics Consortium; Canadian Institutes of Health Research; Knut och Alice Wallenbergs Stiftelse; Stiftelsen för Strategisk Forskning; Ontario Innovation Trust; Wellcome Trust; Novartis Foundation; Ontario Genomics Institute; Merck; GlaxoSmithKline","keywords":"Mechanism (biology); Apicomplexa; Biology; Conformational change; Protein structure; Computational biology; Cell biology; Sequence (biology); Kinase; Biophysics; Plasmodium falciparum; Biochemistry; Physics; Immunology","authors":[{"name":"Amy K. Wernimont","is_ca":true},{"name":"Merhnaz Amani","is_ca":true},{"name":"Wei Qiu","is_ca":true},{"name":"J.C. Pizarro","is_ca":true},{"name":"J.D. Artz","is_ca":true},{"name":"Yu‐Hui Lin","is_ca":true},{"name":"Jocelyn Lew","is_ca":true},{"name":"Ashley Hutchinson","is_ca":true},{"name":"Raymond Hui","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005729244152178639,"gpt":0.2268647110411472,"spread":0.2211354668889686,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009941118,0.0002487205,0.0002012719,0.0002144107,0.0003442544,0.0004350473,0.0002216164,0.0003630726,0.001409818],"category_scores_gemma":[0.0002856595,0.0001374228,0.0002565339,0.0002093261,0.0004564275,0.0005181883,0.0002710652,0.0006674487,0.0003701695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004527862,"about_ca_system_score_gemma":0.0002794935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006230245,"about_ca_topic_score_gemma":0.0006504621,"domain_scores_codex":[0.9999483,0.000006762848,0.000004688305,0.00001528115,0.0000135466,0.00001143024],"domain_scores_gemma":[0.9998888,0.0000189594,0.00003417828,0.00001990982,0.00001773746,0.00002043027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004265128,0.00002962023,0.003995172,0.0003344824,0.00003871472,0.001284736,0.0004014726,0.002920422,0.9698302,0.009893025,0.0005575857,0.01028808],"study_design_scores_gemma":[0.0001463133,0.0004833262,0.06499128,0.00007065701,0.0001290035,0.01030501,0.0007579582,0.02683447,0.8300919,0.01563139,0.05044811,0.0001105573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9637963,0.002245149,0.02517764,0.000476883,0.00004094543,0.00005328184,0.0007560804,0.0002203264,0.007233471],"genre_scores_gemma":[0.9917556,0.0004415785,0.006366859,0.00003740795,0.000003449962,0.00001320677,0.0005309742,0.00001249189,0.0008385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001409818,"threshold_uncertainty_score":0.004716337,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154813243","doi":"10.1002/prot.22850","title":"Blind predictions of protein interfaces by docking calculations in CAPRI","year":2010,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Docking (animal); Computer science; Extant taxon; Protein function; Macromolecular docking; Protein–protein interaction; Computational biology; Data mining; Biological system; Protein structure; Chemistry; Biology; Medicine; Biochemistry","authors":[{"name":"Marc F. Lensink","is_ca":false},{"name":"Shoshana J. Wodak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004155056860339734,"gpt":0.2153989422427763,"spread":0.2112438853824366,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01670216,0.003389888,0.002471089,0.004111696,0.001107054,0.0036463,0.003384787,0.001992746,0.003721592],"category_scores_gemma":[0.02778248,0.0009181433,0.001873263,0.001676973,0.0009143801,0.002306734,0.005031664,0.001963875,0.003302888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001204397,"about_ca_system_score_gemma":0.001945657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002845783,"about_ca_topic_score_gemma":0.002454408,"domain_scores_codex":[0.9884144,0.004127536,0.0007461946,0.002041301,0.003946539,0.000723977],"domain_scores_gemma":[0.9819228,0.007578298,0.001900471,0.004251709,0.00350763,0.0008390691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.008560751,0.00208659,0.1159407,0.002836723,0.002107026,0.001565545,0.005436144,0.4170051,0.08299753,0.008904344,0.03924368,0.3133159],"study_design_scores_gemma":[0.0001593699,0.0008984896,0.01702001,0.0001301846,0.0001435252,0.0005163722,0.0005657768,0.9300273,0.03944911,0.003595588,0.007329521,0.0001647361],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6644838,0.001693238,0.279305,0.0003466409,0.0002456381,0.0009140333,0.003145208,0.03938232,0.01048408],"genre_scores_gemma":[0.800448,0.0004359231,0.1832867,0.0001810669,0.00005007393,0.0008378144,0.01069269,0.001776348,0.002291363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01670216,"threshold_uncertainty_score":0.08833051,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138202269","doi":"10.1002/prot.24285","title":"Protein misfolding in the late‐onset neurodegenerative diseases: Common themes and the unique case of amyotrophic lateral sclerosis","year":2013,"lang":"en","type":"review","venue":"Proteins Structure Function and Bioinformatics","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Amyotrophic lateral sclerosis; SOD1; Disease; Parkin; Neurodegeneration; Neuroscience; Medicine; Biology; Parkinson's disease; Pathology","authors":[{"name":"Vikram Khipple Mulligan","is_ca":false},{"name":"Avijit Chakrabartty","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03999805314667022,"gpt":0.2920854822541304,"spread":0.2520874291074602,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005754587,0.0004682785,0.001021797,0.00200035,0.0004034725,0.001395159,0.0004598551,0.001194351,0.0004974152],"category_scores_gemma":[0.0006156523,0.0002010459,0.0004341525,0.002294431,0.001135114,0.001937806,0.0007461857,0.0012278,0.0003482985],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005483731,"about_ca_system_score_gemma":0.0006002683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000715635,"about_ca_topic_score_gemma":0.001246213,"domain_scores_codex":[0.9996666,0.00007240196,0.00006280045,0.00006619677,0.00008752153,0.00004457859],"domain_scores_gemma":[0.9996742,0.0001164259,0.00009266826,0.00001402551,0.00006568652,0.00003701161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003683571,0.0001738299,0.01002654,0.0211763,0.0003365914,0.04353054,0.005282875,0.0008696023,0.04372381,0.02268863,0.03136814,0.8204547],"study_design_scores_gemma":[0.00002036845,0.000685252,0.02717274,0.004392722,0.0003225841,0.2515981,0.00292153,0.0008103953,0.008348711,0.02194486,0.6815895,0.0001932545],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006477911,0.9889376,0.001143641,0.001603523,0.0003748232,0.000007782253,0.00002378371,0.00001891096,0.001412029],"genre_scores_gemma":[0.03716392,0.9564394,0.001806632,0.001388425,0.001677186,0.00001414082,0.00005311651,0.000009344361,0.001447796],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00200035,"threshold_uncertainty_score":0.003978789,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123728960","doi":"10.1002/prot.10282","title":"Strategies for structural proteomics of prokaryotes: Quantifying the advantages of studying orthologous proteins and of using both NMR and X‐ray crystallography approaches","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; University Health Network","funders":"","keywords":"Thermotoga maritima; Escherichia coli; Genome; Structural genomics; Biology; Structural biology; Recombinant DNA; Thermophile; Crystallography; Biochemistry; Computational biology; Chemistry; Protein structure; Gene; Enzyme","authors":[{"name":"Alexei Savchenko","is_ca":true},{"name":"Adelinda Yee","is_ca":true},{"name":"Anna Khachatryan","is_ca":true},{"name":"T. Skarina","is_ca":true},{"name":"E. Evdokimova","is_ca":true},{"name":"Marina Pavlova","is_ca":true},{"name":"Anthony Semesi","is_ca":true},{"name":"Julian G. B. Northey","is_ca":true},{"name":"Steven Beasley","is_ca":true},{"name":"Ning Lan","is_ca":false},{"name":"Rajdeep Das","is_ca":false},{"name":"Mark Gerstein","is_ca":false},{"name":"Cheryl H. Arrowmith","is_ca":true},{"name":"A.M. Edwards","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04697185959797022,"gpt":0.2555268913483246,"spread":0.2085550317503543,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001383256,0.0007014734,0.0005618921,0.0007593941,0.0005522283,0.000976336,0.0005540061,0.0005885403,0.0005632291],"category_scores_gemma":[0.001419419,0.000315185,0.0004442394,0.0005616343,0.000806384,0.001056244,0.0008482287,0.001090951,0.0003208398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006622536,"about_ca_system_score_gemma":0.0004287821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008152576,"about_ca_topic_score_gemma":0.001991363,"domain_scores_codex":[0.9990218,0.0003345348,0.00008885159,0.0001662756,0.0003224887,0.00006604238],"domain_scores_gemma":[0.99946,0.0001542673,0.00009900868,0.00009754223,0.0001261679,0.00006298791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001095361,0.00003894688,0.003688937,0.0002557137,0.00004924846,0.00005877771,0.00008099272,0.0003597637,0.988592,0.0005630971,0.00008266747,0.00612044],"study_design_scores_gemma":[0.00004458537,0.0003965149,0.02594067,0.00007243423,0.0001449873,0.0009836892,0.0004539234,0.005466742,0.9560774,0.003936775,0.006438586,0.00004363083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9091029,0.008316195,0.07871731,0.001737015,0.0001134149,0.000100229,0.0004174453,0.0001430436,0.001352402],"genre_scores_gemma":[0.8491564,0.004054509,0.144545,0.0005344574,0.00004984991,0.0001083972,0.0007912994,0.00005866774,0.0007013915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001383256,"threshold_uncertainty_score":0.007315457,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097144976","doi":"10.1002/prot.10478","title":"Contact order dependent protein folding rates: Kinetic consequences of a cooperative interplay between favorable nonlocal interactions and local conformational preferences","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Cooperativity; Contact order; Chemistry; Protein folding; Folding (DSP implementation); Chemical physics; Crystallography; Lattice protein; Logarithm; Thermodynamics; Statistical physics; Physics; Native state; Mathematics","authors":[{"name":"Hüseyin Kaya","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009600855958684519,"gpt":0.2549104586405998,"spread":0.2453096026819153,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008643598,0.0002789042,0.0003622186,0.0003306564,0.0002029397,0.0004167026,0.0002711267,0.000240945,0.0003657452],"category_scores_gemma":[0.00324425,0.0001651845,0.000269398,0.0002970806,0.000687324,0.0006109186,0.0003149573,0.0004299532,0.00007792355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003546608,"about_ca_system_score_gemma":0.0001700586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004274918,"about_ca_topic_score_gemma":0.000632465,"domain_scores_codex":[0.9996896,0.0001102537,0.00002009399,0.00006180419,0.00007215471,0.00004615568],"domain_scores_gemma":[0.9978873,0.001208923,0.0003432431,0.000327808,0.0001113757,0.0001214551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001185179,0.0002717555,0.1321617,0.0002230528,0.0001809273,0.0003693884,0.0002990035,0.309242,0.5357062,0.005671334,0.0001312114,0.01455821],"study_design_scores_gemma":[0.00003559545,0.000516225,0.05464786,0.000007669652,0.00006668256,0.0004276296,0.000159396,0.7382819,0.2003062,0.005272112,0.0002226664,0.00005606389],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960294,0.00003742662,0.00375477,0.00001085144,6.161332e-7,0.000003669675,0.00001246577,0.00002014671,0.0001307353],"genre_scores_gemma":[0.999411,0.00001729049,0.0005205751,0.000001055499,3.100456e-7,0.000003345435,0.00002054826,0.000003154672,0.00002258932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008643598,"threshold_uncertainty_score":0.004571199,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095209497","doi":"10.1002/prot.21199","title":"NMR structure and binding studies confirm that PA4608 from <i>Pseudomonas aeruginosa</i> is a PilZ domain and a c‐di‐GMP binding protein","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; University of Wyoming","keywords":"Guanosine; Biochemistry; Signal transducing adaptor protein; Binding protein; Binding site; Protein structure; Guanosine monophosphate; Chemistry; Binding domain; Biology; Stereochemistry; Nucleotide; Receptor","authors":[{"name":"Theresa A. Ramelot","is_ca":false},{"name":"Adelinda Yee","is_ca":true},{"name":"John Cort","is_ca":false},{"name":"Anthony Semesi","is_ca":true},{"name":"C.H. Arrowsmith","is_ca":true},{"name":"Michael A. Kennedy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008744382100391447,"gpt":0.207684373333078,"spread":0.1989399912326865,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008685995,0.0003162297,0.0002366847,0.00009421559,0.0002391279,0.0001471323,0.0001881258,0.000449801,0.002561956],"category_scores_gemma":[0.0002803823,0.0001010812,0.000272956,0.0001414674,0.0001615754,0.000174152,0.0001390129,0.0005134835,0.001430751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002002321,"about_ca_system_score_gemma":0.0001142752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009449742,"about_ca_topic_score_gemma":0.0008693985,"domain_scores_codex":[0.9999195,0.00001212001,0.000005015055,0.00001801051,0.00002565264,0.000019733],"domain_scores_gemma":[0.9998241,0.00003462193,0.00003585426,0.00001449096,0.0000311039,0.00005987007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008259412,0.00004034501,0.0007991971,0.00003873849,0.000004447597,0.0000803978,0.00002790029,0.0001122154,0.9970312,0.00008677619,0.0001445331,0.001551593],"study_design_scores_gemma":[0.00004156846,0.0005523611,0.02670974,0.00001322757,0.00001886962,0.002829725,0.00009957976,0.003337106,0.9541197,0.0002362759,0.01202061,0.00002130519],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905482,0.0005768987,0.003777944,0.0003203177,0.00002137994,0.0000277816,0.0009977103,0.000106891,0.003622904],"genre_scores_gemma":[0.9749215,0.0005518393,0.01451746,0.0003024658,0.00001768574,0.00003117947,0.006429853,0.00005996506,0.003168052],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002561956,"threshold_uncertainty_score":0.008570611,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148809281","doi":"10.1002/prot.10620","title":"Functional interaction of 13 yeast SCF complexes with a set of yeast E2 enzymes in vitro","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Ubiquitin; Yeast; Ubiquitin-conjugating enzyme; Enzyme; Biochemistry; In vitro; Ubiquitin ligase; Protein subunit; Saccharomyces cerevisiae; Chemistry; Cell biology; Biology; Gene","authors":[{"name":"Bart Kus","is_ca":true},{"name":"Catherine E Caldon","is_ca":true},{"name":"Ronit Andorn‐Broza","is_ca":true},{"name":"A.M. Edwards","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01223125429976308,"gpt":0.2163192130280032,"spread":0.2040879587282401,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007306308,0.0008526963,0.0006234976,0.0003704692,0.0004781803,0.001377104,0.0004732467,0.0004049713,0.001776438],"category_scores_gemma":[0.000469235,0.0004497491,0.0006695881,0.0004899947,0.000230009,0.0002712123,0.0005746481,0.0005987977,0.0007119668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001330304,"about_ca_system_score_gemma":0.0004319217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002623813,"about_ca_topic_score_gemma":0.004014501,"domain_scores_codex":[0.9990923,0.000183635,0.0001297417,0.0001575761,0.0002717239,0.0001651052],"domain_scores_gemma":[0.9997326,0.00006753441,0.00003256613,0.00004420642,0.00005282205,0.00007033714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009548725,0.0002995378,0.007143338,0.0002944572,0.0001839379,0.0002886581,0.0001021085,0.001146571,0.9786235,0.0005451029,0.0006500912,0.009767832],"study_design_scores_gemma":[0.00004462299,0.000168433,0.007575728,0.0000208827,0.00007309538,0.0003328554,0.00005486764,0.002199621,0.9819986,0.00006965204,0.00744583,0.00001580429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902999,0.002958,0.003916885,0.0001182103,0.00005255812,0.00004859506,0.0009582355,0.0001470325,0.00150052],"genre_scores_gemma":[0.9773952,0.001781793,0.00889148,0.0001176558,0.00001251135,0.00006465142,0.007371653,0.00007439857,0.004290661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002623813,"threshold_uncertainty_score":0.009652078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142319132","doi":"10.1002/prot.22538","title":"Assessment of the protein‐structure refinement category in CASP8","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Fondation pour la Recherche Médicale","keywords":"CASP; Computer science; Correlation; Protein structure prediction; Protein structure; Template; Data mining; Mathematics; Chemistry","authors":[{"name":"Justin L. MacCallum","is_ca":false},{"name":"Lan Hua","is_ca":false},{"name":"Michael J. Schnieders","is_ca":false},{"name":"Vijay S. Pande","is_ca":false},{"name":"Matthew P. Jacobson","is_ca":false},{"name":"Ken A. Dill","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004078147536853637,"gpt":0.2198048741540042,"spread":0.2157267266171506,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0350474,0.001341407,0.001351381,0.01412427,0.001699285,0.003396244,0.001868777,0.001101942,0.0041409],"category_scores_gemma":[0.08471905,0.0002776945,0.001146461,0.004648778,0.001244749,0.002117308,0.002894749,0.001154139,0.001473081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001509451,"about_ca_system_score_gemma":0.001512611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002766756,"about_ca_topic_score_gemma":0.003757987,"domain_scores_codex":[0.9778354,0.006463195,0.003884233,0.001112015,0.009339159,0.001366029],"domain_scores_gemma":[0.8970211,0.03821597,0.01476964,0.006240622,0.0404041,0.003348603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003855994,0.000305115,0.6281387,0.001420951,0.001085624,0.0006889314,0.001129569,0.008794781,0.004685118,0.004161851,0.02509554,0.3206379],"study_design_scores_gemma":[0.0006303943,0.002326783,0.6860126,0.001958825,0.001982381,0.006522456,0.004112459,0.1723802,0.02897985,0.02168091,0.07278463,0.0006286508],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8778894,0.009836208,0.06697515,0.003180591,0.0007021483,0.001058262,0.006289598,0.004757926,0.02931079],"genre_scores_gemma":[0.9417061,0.001077142,0.04529605,0.0004074512,0.0001896473,0.0002849406,0.008166739,0.0006293541,0.002242643],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0350474,"threshold_uncertainty_score":0.1853505,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110655770","doi":"10.1002/prot.21111","title":"Impact of EGFR point mutations on the sensitivity to gefitinib: Insights from comparative structural analyses and molecular dynamics simulations","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Lung Cancer Treatments and Mutations","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"T790M; Gefitinib; Mutation; Mutant; Point mutation; Mutagenesis; Molecular dynamics; Computational biology; Biology; Chemistry; Genetics; Epidermal growth factor receptor; Gene; Cancer; Computational chemistry","authors":[{"name":"Bing Liu","is_ca":true},{"name":"Brandon Bernard","is_ca":true},{"name":"Jian Wu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01801608363722405,"gpt":0.3289903166708865,"spread":0.3109742330336625,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000529167,0.0006365778,0.0009097058,0.0007748326,0.0006199296,0.0005192113,0.000672842,0.000799827,0.001126829],"category_scores_gemma":[0.001283326,0.0003358779,0.001127559,0.0005068219,0.0005193076,0.0005335634,0.0003702812,0.0006349095,0.0001052303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001106255,"about_ca_system_score_gemma":0.0009616187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01515088,"about_ca_topic_score_gemma":0.01021869,"domain_scores_codex":[0.9998679,0.00003619244,0.000008713797,0.00001899026,0.0000332621,0.0000349263],"domain_scores_gemma":[0.999524,0.000286392,0.00004495829,0.00002552791,0.00006566812,0.00005348035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001744744,0.0001230455,0.003922516,0.00006839479,0.00009036004,0.0001178481,0.00004423774,0.9886023,0.003142972,0.001106124,0.000321727,0.002285995],"study_design_scores_gemma":[0.00002242336,0.00006100995,0.001715033,0.000004857859,0.0000201795,0.00001285931,0.00002063406,0.9971517,0.0005542058,0.0003040115,0.0001258456,0.000007259376],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928579,0.0002966906,0.002823805,0.0002096593,0.00001798741,0.0000226159,0.0003311644,0.0001094293,0.003330739],"genre_scores_gemma":[0.9973243,0.000194337,0.001745714,0.00003085644,0.000007388896,0.00003973556,0.0004036394,0.00002643664,0.000227602],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01515088,"threshold_uncertainty_score":0.03012538,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2053947235","doi":"10.1002/prot.1154","title":"Speeding protein folding beyond the Gō model: How a little frustration sometimes helps","year":2001,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Frustration; Energy landscape; Protein folding; Statistical physics; Folding (DSP implementation); Physics; Kinetics; Chemical physics; Hamiltonian (control theory); Thermodynamics; Chemistry; Classical mechanics; Condensed matter physics; Mathematics; Engineering; Nuclear magnetic resonance; Mathematical optimization","authors":[{"name":"Steven S. Plotkin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007994913296369865,"gpt":0.2081611389460154,"spread":0.2001662256496455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009799948,0.0007684555,0.0008084002,0.0003517368,0.0009999889,0.001080517,0.0009788712,0.001876364,0.0020761],"category_scores_gemma":[0.006673845,0.0003777854,0.0005364863,0.0002300031,0.00229846,0.00502636,0.001531231,0.002025196,0.0005999769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005014871,"about_ca_system_score_gemma":0.0003960297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001386097,"about_ca_topic_score_gemma":0.001313536,"domain_scores_codex":[0.9997545,0.00008535496,0.000009879969,0.00004569611,0.00004628832,0.00005828029],"domain_scores_gemma":[0.9983343,0.000784538,0.000132088,0.0004938986,0.00006570253,0.0001894966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001543336,0.0004575779,0.006088069,0.0006395984,0.0003429777,0.0009829132,0.001304498,0.5201553,0.08567095,0.2868208,0.01135385,0.08464012],"study_design_scores_gemma":[0.0001628458,0.0003511588,0.0009725727,0.00006984415,0.00009335196,0.0004021435,0.0002896173,0.664553,0.0181312,0.307232,0.007635889,0.0001063143],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6496726,0.005642778,0.2979455,0.0197659,0.0009819453,0.0000594438,0.000129447,0.003542821,0.0222596],"genre_scores_gemma":[0.9784897,0.0009163687,0.01722602,0.0009184676,0.00007208355,0.0000307694,0.00003017645,0.000346344,0.001970045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0020761,"threshold_uncertainty_score":0.006945193,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150072598","doi":"10.1002/prot.10506","title":"Simple two‐state protein folding kinetics requires near‐levinthal thermodynamic cooperativity","year":2003,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Cooperativity; Protein folding; Chemistry; Thermodynamics; Native state; Lattice protein; Enthalpy; Kinetics; Downhill folding; Folding (DSP implementation); Energy landscape; Intramolecular force; Chemical physics; Phi value analysis; Crystallography; Physics; Stereochemistry; Classical mechanics","authors":[{"name":"Hüseyin Kaya","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005942935023025641,"gpt":0.2210054765554958,"spread":0.2150625415324701,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009800806,0.0004323802,0.001032566,0.0003244346,0.0005247064,0.001484713,0.0007254549,0.001051663,0.000988111],"category_scores_gemma":[0.003391285,0.0004212098,0.0008466072,0.0002352675,0.00171064,0.001624977,0.0007116931,0.0007831783,0.0003715443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001044767,"about_ca_system_score_gemma":0.0007502918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00115101,"about_ca_topic_score_gemma":0.0006744144,"domain_scores_codex":[0.9993894,0.0001568221,0.00004771191,0.0001368702,0.0001495349,0.000119725],"domain_scores_gemma":[0.9985597,0.0006633156,0.0002318821,0.0003578537,0.0001164347,0.0000709124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002522385,0.0002513469,0.008977889,0.0002147642,0.0001574113,0.0008826999,0.0008070003,0.3981832,0.09709995,0.4839891,0.0005082623,0.008676216],"study_design_scores_gemma":[0.00004912556,0.0001370639,0.001728456,0.000008180725,0.00002306073,0.000332807,0.00006220568,0.7966692,0.008540176,0.1914294,0.0009772837,0.0000430239],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7866606,0.0001411907,0.2034135,0.0004755587,0.00002490776,0.0001055932,0.000084753,0.0003782616,0.008715712],"genre_scores_gemma":[0.9927557,0.00006414579,0.005527546,0.00004467093,0.000004437903,0.0001046772,0.00003576016,0.00002294766,0.001440137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001484713,"threshold_uncertainty_score":0.00758034,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149064382","doi":"10.1002/prot.21066","title":"Criteria for downhill protein folding: Calorimetry, chevron plot, kinetic relaxation, and single‐molecule radius of gyration in chain models with subdued degrees of cooperativity","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Natural Sciences and Engineering Research Council of Canada","funders":"","keywords":"Cooperativity; Radius of gyration; Chemistry; Thermodynamics; Heat capacity; Protein folding; Folding (DSP implementation); Chevron (anatomy); Relaxation (psychology); Chemical physics; Physics; Polymer","authors":[{"name":"Michael Knott","is_ca":true},{"name":"Hue Sun Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008477218267574284,"gpt":0.2061066421497445,"spread":0.1976294238821702,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002314172,0.0007182381,0.0006599302,0.001511337,0.0004228258,0.001009155,0.0007853471,0.0008087083,0.000378423],"category_scores_gemma":[0.007947466,0.0003194752,0.0004437397,0.0004506843,0.001522595,0.001488144,0.0008634067,0.0009072021,0.00007962835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00160975,"about_ca_system_score_gemma":0.0005932059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00279997,"about_ca_topic_score_gemma":0.001009221,"domain_scores_codex":[0.999448,0.0002127782,0.00002966553,0.0001168039,0.0001229164,0.0000697558],"domain_scores_gemma":[0.9965559,0.001675087,0.0009570256,0.0003031425,0.0002118463,0.0002970349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005746036,0.0001756275,0.02162552,0.0001597994,0.00006000815,0.0003651598,0.0007598604,0.7204524,0.1457109,0.09961894,0.0003287233,0.01016848],"study_design_scores_gemma":[0.00001056427,0.000036065,0.002267024,0.00000575156,0.000003500972,0.00004145047,0.00002663045,0.9797812,0.008101608,0.009606516,0.00009691487,0.00002290139],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8861138,0.0003707783,0.1119005,0.0002133975,0.00001034556,0.00005210147,0.0000658107,0.000285096,0.0009882357],"genre_scores_gemma":[0.9931545,0.0000452097,0.00655606,0.00001237258,0.000003546661,0.000036289,0.00003136316,0.00003341671,0.0001272541],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00279997,"threshold_uncertainty_score":0.01223862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154157579","doi":"10.1002/prot.22229","title":"Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; Howard Hughes Medical Institute","keywords":"Chemistry; Crystal structure; Nuclear magnetic resonance spectroscopy; Crystallography; Hydrogen bond; Nuclear magnetic resonance crystallography; Phaser; Molecule; Fluorine-19 NMR; Physics; Stereochemistry","authors":[{"name":"Theresa A. Ramelot","is_ca":true},{"name":"Srivatsan Raman","is_ca":false},{"name":"A.P. Kuzin","is_ca":false},{"name":"Rong Xiao","is_ca":false},{"name":"Li‐Chung Ma","is_ca":false},{"name":"Thomas Acton","is_ca":false},{"name":"J.F. Hunt","is_ca":false},{"name":"G.T. Montelione","is_ca":false},{"name":"David Baker","is_ca":false},{"name":"Michael A. Kennedy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01008026154962658,"gpt":0.2263815216130362,"spread":0.2163012600634096,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008839907,0.001255456,0.002254824,0.0008537747,0.000716115,0.0008980625,0.001995977,0.0007170755,0.0008673832],"category_scores_gemma":[0.0132537,0.0006643001,0.001293359,0.002225314,0.0003453602,0.001285853,0.0008449213,0.001540668,0.0005188803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009011845,"about_ca_system_score_gemma":0.001580536,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006644177,"about_ca_topic_score_gemma":0.006870363,"domain_scores_codex":[0.9969931,0.001616189,0.0002648848,0.0003027132,0.0006491279,0.0001739389],"domain_scores_gemma":[0.9972941,0.001097462,0.0002688293,0.0004385429,0.0007808349,0.0001202133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003273289,0.001747823,0.05121484,0.002673604,0.003029034,0.001628574,0.002533281,0.1474409,0.434513,0.01433133,0.02028624,0.317328],"study_design_scores_gemma":[0.0004785417,0.001314989,0.01283801,0.0001472401,0.0009824475,0.001822304,0.0003353237,0.7411267,0.2205546,0.001603232,0.01860117,0.0001954848],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8142344,0.006549304,0.1706801,0.001058992,0.0001021253,0.0003217128,0.00180163,0.003027495,0.002224318],"genre_scores_gemma":[0.6484224,0.003926094,0.3400317,0.0002262461,0.00003764663,0.000317263,0.004980814,0.001087947,0.0009697998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008839907,"threshold_uncertainty_score":0.04675043,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137441527","doi":"10.1002/prot.22378","title":"Crystal structure of human eIF5A1: Insight into functional similarity of human eIF5A1 and eIF5A2","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Polyamine Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Structural Genomics Consortium","funders":"","keywords":"Eukaryotic initiation factor; Eukaryotic translation; Biology; EIF4A1; Gene isoform; Initiation factor; Biochemistry; EIF4EBP1; EIF4E; EIF4G; Eukaryotic translation initiation factor 4 gamma; Internal ribosome entry site; Gene; Messenger RNA; Molecular biology; Translation (biology)","authors":[{"name":"Yufeng Tong","is_ca":true},{"name":"Isaac Park","is_ca":false},{"name":"Bum‐Soo Hong","is_ca":true},{"name":"L. Nedyalkova","is_ca":true},{"name":"W. Tempel","is_ca":true},{"name":"Hee‐Won Park","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007645516101244236,"gpt":0.2306560252376066,"spread":0.2230105091363624,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003046278,0.001083754,0.0007552267,0.0003033954,0.0007931953,0.0008826001,0.0009866492,0.0007384827,0.007044881],"category_scores_gemma":[0.0004353962,0.0003559731,0.0004289009,0.0006519976,0.0001641203,0.0004233969,0.000420473,0.001722393,0.001248377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001420656,"about_ca_system_score_gemma":0.001005139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005038611,"about_ca_topic_score_gemma":0.006024195,"domain_scores_codex":[0.9998512,0.00001568222,0.000006736317,0.00003032038,0.0000673934,0.00002861814],"domain_scores_gemma":[0.9999098,0.00001952245,0.00001581011,0.000002720826,0.00002215731,0.00003001875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00553575,0.001547199,0.0195059,0.006150863,0.0007065179,0.005625559,0.00126605,0.04797674,0.5483533,0.01770561,0.2185204,0.1271061],"study_design_scores_gemma":[0.002240634,0.000942337,0.04739025,0.0008054411,0.0007199452,0.004457221,0.001235976,0.1719252,0.1687053,0.005442115,0.5957862,0.0003493924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7597477,0.1190764,0.02041499,0.006513248,0.002178662,0.0005561672,0.02874268,0.00243964,0.06033052],"genre_scores_gemma":[0.8626325,0.03066302,0.0304381,0.001296578,0.0003709808,0.000357728,0.05760092,0.0003214197,0.01631878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007044881,"threshold_uncertainty_score":0.0235675,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2079562344","doi":"10.1002/(sici)1097-0134(20000801)40:2<310::aid-prot110>3.0.co;2-a","title":"An Atoms-In-Molecules study of the genetically-encoded amino acids: I. Effects of conformation and of tautomerization on geometric, atomic, and bond properties","year":2000,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Molecule; Chemistry; Transferability; Density functional theory; Hydrogen bond; Atom (system on chip); Computational chemistry; Tautomer; Atoms in molecules; Amino acid; Ionic bonding; Chemical physics; Crystallography; Stereochemistry; Ion; Organic chemistry; Computer science","authors":[{"name":"Chérif F. Matta","is_ca":true},{"name":"Richard F. W. Bader","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004847944738934888,"gpt":0.1935960752284306,"spread":0.1887481304894957,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000157764,0.000242325,0.0002060253,0.0001509544,0.0002720887,0.0002678056,0.0002355431,0.0002292812,0.0006472258],"category_scores_gemma":[0.0003460231,0.0001037517,0.0002075844,0.0001561336,0.0005597894,0.0003827567,0.0002076923,0.0008441187,0.00007681166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002981966,"about_ca_system_score_gemma":0.0001559837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000791613,"about_ca_topic_score_gemma":0.0006924892,"domain_scores_codex":[0.9999188,0.00001981245,0.000002676643,0.00001849706,0.00002834575,0.00001186728],"domain_scores_gemma":[0.9997864,0.00013385,0.0000388471,0.00001375431,0.00001139644,0.00001571301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001471458,0.00009617057,0.0006360025,0.00009806484,0.00002269789,0.0001560145,0.0001133066,0.00597499,0.9801437,0.005868779,0.00009732935,0.006645893],"study_design_scores_gemma":[0.000030316,0.001108189,0.00583676,0.000009881272,0.00003324504,0.000256954,0.0001330986,0.04014918,0.9453542,0.003859764,0.003208198,0.00002019466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905212,0.00127482,0.006031538,0.0001656005,0.00002142372,0.00001702397,0.00003830924,0.00002506843,0.001905039],"genre_scores_gemma":[0.9902021,0.00187005,0.006078616,0.00005423728,0.00001927022,0.00002105814,0.00004180441,0.00001843388,0.001694495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000791613,"threshold_uncertainty_score":0.002165139,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166105683","doi":"10.1002/prot.21546","title":"High incidence of ubiquitin‐like domains in human ubiquitin‐specific proteases","year":2007,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Deubiquitinating enzyme; Ubiquitin; Proteases; Proteasome; Computational biology; Biology; Ubiquitins; Ubiquitin-Protein Ligases; Enzyme; Ubiquitin ligase; Subcellular localization; Protein domain; Ubiquitin-conjugating enzyme; Biochemistry; Cell biology; Gene","authors":[{"name":"Robert Ménard","is_ca":true},{"name":"Traian Sulea","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008354993592796477,"gpt":0.2281028190768516,"spread":0.2197478254840551,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007043428,0.0002139426,0.0003385265,0.001299749,0.0002974116,0.0007118603,0.0002227217,0.000661729,0.001083639],"category_scores_gemma":[0.001565907,0.0001879416,0.0002971701,0.001727066,0.0003584185,0.0004673837,0.0004932125,0.0003233452,0.0008685919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001745746,"about_ca_system_score_gemma":0.0001949538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002484008,"about_ca_topic_score_gemma":0.0002677428,"domain_scores_codex":[0.9989537,0.0001604544,0.0001218991,0.0003033475,0.0003524216,0.0001081054],"domain_scores_gemma":[0.9988198,0.0003563316,0.00041287,0.0001726072,0.0001102603,0.0001282248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00293256,0.000274336,0.4395891,0.0008242998,0.0003001812,0.005223867,0.0004577369,0.001559365,0.3860436,0.002859766,0.001481666,0.1584535],"study_design_scores_gemma":[0.00008474092,0.001113971,0.5792817,0.0001506617,0.0004377617,0.05810671,0.0007344091,0.004152318,0.3024701,0.004527764,0.04886578,0.00007400185],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982144,0.009026115,0.005840064,0.0001410198,0.00002685026,0.0000231953,0.0009352249,0.00014652,0.00171698],"genre_scores_gemma":[0.9906748,0.002979212,0.00384775,0.0001104465,0.00003873681,0.00001222685,0.001547111,0.00001736508,0.0007724636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299749,"threshold_uncertainty_score":0.003724992,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125563621","doi":"10.1002/prot.21057","title":"Characterization and tissue‐specific expression of two lepidopteran farnesyl diphosphate synthase homologs: Implications for the biosynthesis of ethyl‐substituted juvenile hormones","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Juvenile hormone; Biosynthesis; ATP synthase; Farnesyl diphosphate synthase; Hormone; Biology; Biochemistry; Enzyme; Chemistry","authors":[{"name":"Michel Cusson","is_ca":true},{"name":"Catherine Béliveau","is_ca":true},{"name":"Stephanie E. Sen","is_ca":false},{"name":"Sophie Vandermoten","is_ca":false},{"name":"Robert G. Rutledge","is_ca":true},{"name":"Don Stewart","is_ca":true},{"name":"Frédéric Francis","is_ca":false},{"name":"Éric Haubruge","is_ca":false},{"name":"Peter H. Rehse","is_ca":false},{"name":"David J. Huggins","is_ca":false},{"name":"Ashley P. G. Dowling","is_ca":false},{"name":"Guy H. Grant","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02049028658484928,"gpt":0.2584008736563627,"spread":0.2379105870715134,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009521368,0.0002969322,0.0001954001,0.0001823285,0.000125374,0.0003462376,0.0001837012,0.0002840347,0.0006496967],"category_scores_gemma":[0.0001480551,0.0001887654,0.0002509986,0.0001794097,0.0001247204,0.0001877634,0.000186159,0.0004043094,0.0005098406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002797076,"about_ca_system_score_gemma":0.0002214115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001083302,"about_ca_topic_score_gemma":0.001476701,"domain_scores_codex":[0.9999266,0.000005470631,0.000009362097,0.0000243355,0.00001935597,0.00001491221],"domain_scores_gemma":[0.9998637,0.00003447917,0.00002930253,0.00001592574,0.0000212256,0.00003524731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001912007,0.000003678505,0.0002070466,0.00001386786,0.00000140146,0.00002933836,0.00001336427,0.00001543539,0.9991385,0.00003102663,0.000006071508,0.0005209481],"study_design_scores_gemma":[0.00002792064,0.0001638654,0.05635703,0.00001412617,0.00004237755,0.001277862,0.0001652998,0.001353399,0.9349707,0.000102274,0.005509773,0.0000153533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915226,0.001474041,0.004189759,0.00008970558,0.0000142553,0.00003453376,0.001482558,0.000036857,0.001155596],"genre_scores_gemma":[0.9794103,0.001236082,0.00765845,0.0000836447,0.00001400734,0.00003944883,0.007024361,0.00004797671,0.004485752],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001083302,"threshold_uncertainty_score":0.002173424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171316518","doi":"10.1002/prot.22592","title":"Study of the impact of the T877A mutation on ligand‐induced helix‐12 positioning of the androgen receptor resulted in design and synthesis of novel antiandrogens","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Flutamide; Androgen receptor; Antiandrogen; Chemistry; Agonist; LNCaP; Androgen; Receptor; Prostate cancer; Biology; Biochemistry; Genetics; Hormone; Cancer","authors":[{"name":"Jinming Zhou","is_ca":true},{"name":"Bing Liu","is_ca":true},{"name":"Guoyan Geng","is_ca":true},{"name":"Jian Wu","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02837089358977605,"gpt":0.2879162032234596,"spread":0.2595453096336835,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001339963,0.0003071647,0.0002611826,0.00008753296,0.0003519536,0.0002383419,0.0003588324,0.0003127586,0.001331068],"category_scores_gemma":[0.000371329,0.0001444212,0.000313031,0.00009698658,0.0002249146,0.0002836742,0.000203998,0.0006416925,0.0001817873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002948615,"about_ca_system_score_gemma":0.0004397282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003345657,"about_ca_topic_score_gemma":0.002574841,"domain_scores_codex":[0.9999349,0.00001605114,0.000003444237,0.00001162134,0.00001485675,0.00001905593],"domain_scores_gemma":[0.99991,0.00003337127,0.00001513458,0.000007907671,0.0000163356,0.00001730262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002407065,0.0009444523,0.0133175,0.0006201728,0.0002592923,0.002075319,0.0003585957,0.4382677,0.492959,0.02078275,0.002627334,0.02538085],"study_design_scores_gemma":[0.0002522025,0.001131129,0.003790289,0.00004255536,0.0001303177,0.0001950663,0.0002292029,0.9010544,0.08807806,0.001569637,0.003476368,0.0000506888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938388,0.0002940331,0.003745897,0.0001270366,0.00004955599,0.00001482142,0.00008319828,0.0000657203,0.001780913],"genre_scores_gemma":[0.9970641,0.0001937873,0.002194809,0.00002869934,0.000004609924,0.00001401602,0.0001221174,0.00002602361,0.0003518378],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003345657,"threshold_uncertainty_score":0.006652415,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2952096628","doi":"10.1002/prot.25496","title":"Comprehensive mapping of cystic fibrosis mutations to CFTR protein identifies mutation clusters and molecular docking predicts corrector binding site","year":2018,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Binding site; Homology modeling; Mutant; In silico; Docking (animal); Cystic fibrosis transmembrane conductance regulator; Mutation; Cystic fibrosis; Computational biology; Plasma protein binding; Protein structure; Genetics; Biology; Chemistry; Gene; Biochemistry; Medicine; Enzyme","authors":[{"name":"Steven V. Molinski","is_ca":false},{"name":"Vijay Shahani","is_ca":false},{"name":"Adithya S. Subramanian","is_ca":false},{"name":"Stephen S. MacKinnon","is_ca":false},{"name":"Geoffrey Woollard","is_ca":false},{"name":"Marcon Laforet","is_ca":false},{"name":"Onofrio Laselva","is_ca":true},{"name":"Leonard D. Morayniss","is_ca":false},{"name":"Christine E. Bear","is_ca":true},{"name":"Andreas Windemuth","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01189026675749927,"gpt":0.2598120121687146,"spread":0.2479217454112154,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008091654,0.0002575353,0.0002705565,0.0006390705,0.000211682,0.0001843186,0.0001554406,0.0002372466,0.0006496722],"category_scores_gemma":[0.0001815404,0.0001196755,0.0003222589,0.0004284009,0.00009670381,0.0001035615,0.0002208315,0.0001756591,0.0002944769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002734256,"about_ca_system_score_gemma":0.0002623511,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002145981,"about_ca_topic_score_gemma":0.002707836,"domain_scores_codex":[0.9999321,0.000006639884,0.000005283347,0.00002214019,0.00002168266,0.00001219954],"domain_scores_gemma":[0.9999263,0.00001297987,0.00002435286,0.000008120171,0.00001057563,0.00001765926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003709723,0.00009168426,0.03432902,0.0001048647,0.00004547564,0.0005621221,0.0001599983,0.003214097,0.9468888,0.0003241353,0.0004026609,0.01350617],"study_design_scores_gemma":[0.00004296577,0.000566192,0.6161811,0.00006203023,0.0001826072,0.003704281,0.0004733538,0.05650435,0.3149357,0.0007611313,0.006534152,0.00005214674],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958626,0.0003328236,0.002921788,0.00001946867,0.000002623355,0.00001766854,0.0004843056,0.00009298105,0.0002656884],"genre_scores_gemma":[0.9942977,0.0001489148,0.004137614,0.000008722111,0.000001004544,0.00001228006,0.001151355,0.00001329199,0.0002291437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002145981,"threshold_uncertainty_score":0.004267037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}