{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":253,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":253,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"6daab0e57b0b","filters":{"venue":"Retrovirology"}},"results":[{"id":"W2142677020","doi":"10.1186/1742-4690-11-35","title":"Rapid inflammasome activation in microglia contributes to brain disease in HIV/AIDS","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Heritage Medical Research Clinic; University of Alberta","funders":"","keywords":"Microglia; Inflammasome; Innate immune system; Immunology; Virology; Neuroinflammation; Lentivirus; Feline immunodeficiency virus; Inflammation; Medicine; Biology; Caspase 1; Immune system; Virus; Viral disease","retraction":null,"screen_n_in":null,"score":{"opus":0.003711217908039639,"gpt":0.2126647352193984,"spread":0.2089535173113588,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003513128,0.0001574706,0.0002121649,0.0002347802,0.00003018344,0.00001266874,0.0001880245,0.0002051563,0.0000236124],"category_scores_gemma":[0.0007557345,0.0001681524,0.00006063421,0.000197702,0.00006467734,0.000007364841,0.0001062093,0.0001409974,0.00004627985],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003323622,"about_ca_system_score_gemma":0.00005277029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002828036,"about_ca_topic_score_gemma":0.00009648669,"domain_scores_codex":[0.9987124,0.000199595,0.00028324,0.0003603139,0.00006046579,0.000383951],"domain_scores_gemma":[0.9994684,0.00004527314,0.00005662511,0.0003284745,0.00003277928,0.00006843332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005742481,0.0000522708,0.2212346,0.00001118411,0.00001360247,0.000002380578,0.00005059147,0.0001912227,0.7719489,0.0007654572,0.001005873,0.004149573],"study_design_scores_gemma":[0.003753293,0.0008170971,0.637437,0.00003041331,0.000008229808,0.000001161991,0.0000705554,0.0001970589,0.1650247,0.0008885773,0.191367,0.0004048317],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947019,0.0002598373,0.001158499,0.003135409,0.00009325938,0.0002543506,0.00000560756,0.000009684207,0.0003814169],"genre_scores_gemma":[0.9959703,0.00004022215,0.0001146407,0.003094918,0.00008346639,0.00005655155,0.0001978015,0.00001941798,0.0004226821],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6069243,"threshold_uncertainty_score":0.6857056,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066457589","doi":"10.1186/s12977-015-0150-z","title":"The CRISPR/Cas9 system inactivates latent HIV-1 proviral DNA","year":2015,"lang":"en","type":"article","venue":"Retrovirology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Program for Changjiang Scholars and Innovative Research Team in University; Peking Union Medical College; Canadian Institutes of Health Research; Chinese Academy of Medical Sciences","keywords":"CRISPR; Cas9; Genome editing; DNA; Virology; Biology; Gene; Jurkat cells; Computational biology; Genetics; T cell; Immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.009639150517552578,"gpt":0.2666982627753903,"spread":0.2570591122578377,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002583736,0.0001540726,0.0001442386,0.00002757878,0.00009691767,0.00002608037,0.0002351584,0.0001760954,0.000002101988],"category_scores_gemma":[0.0001050367,0.0001121582,0.00006915417,0.00005988406,0.00009108042,0.000002467049,0.0001406074,0.0001251039,0.00005255956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004081929,"about_ca_system_score_gemma":0.0000594223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000017446,"about_ca_topic_score_gemma":0.00001433885,"domain_scores_codex":[0.9989899,0.00007580047,0.0001873584,0.0002772728,0.0001131255,0.0003565782],"domain_scores_gemma":[0.9993471,0.00001960188,0.00005551787,0.0004031617,0.00005530438,0.0001193494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005622227,0.0000762327,0.02702072,0.00007900679,0.0002204437,0.00004319448,0.00019849,0.002460197,0.9313939,0.002652259,0.03100332,0.004290028],"study_design_scores_gemma":[0.00198536,0.002008654,0.01112407,0.00001800293,0.00007265658,0.0003725955,0.0009171052,0.002827517,0.5285982,0.00009223663,0.4513519,0.0006317073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885753,0.001950434,0.005778387,0.0006369735,0.0006574515,0.0002129,0.000009017531,0.00005288951,0.002126673],"genre_scores_gemma":[0.9982091,0.0000563663,0.0001767889,0.00008944076,0.0003939004,0.00003276042,0.00003133824,0.00002566038,0.0009846089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4203485,"threshold_uncertainty_score":0.4573677,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2622470207","doi":"10.1186/s12977-017-0360-7","title":"HIV drug resistance against strand transfer integrase inhibitors","year":2017,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":178,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Elvitegravir; Dolutegravir; Raltegravir; Integrase; Integrase inhibitor; Drug resistance; Medicine; Biology; Virology; Pharmacology; Genetics; Human immunodeficiency virus (HIV); Antiretroviral therapy; Viral load","retraction":null,"screen_n_in":null,"score":{"opus":0.04907448771527052,"gpt":0.3381716428923646,"spread":0.2890971551770941,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003424448,0.0007661781,0.00313713,0.0004082514,0.0002053559,0.00003851549,0.000336123,0.0006932236,0.0001781674],"category_scores_gemma":[0.0001111675,0.0005460069,0.0008787989,0.0001521114,0.0002991929,0.00006706406,0.00005139351,0.0009839085,0.0006889697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003293667,"about_ca_system_score_gemma":0.0007476774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003209937,"about_ca_topic_score_gemma":0.00008950294,"domain_scores_codex":[0.9971358,0.0002164271,0.00088388,0.000833235,0.0003192129,0.0006114064],"domain_scores_gemma":[0.9982211,0.000170556,0.0002323784,0.001011874,0.00005990687,0.0003041772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001912438,0.0002877238,0.0002283709,0.01271728,0.00165974,0.002086794,0.0002799442,3.106695e-8,0.000001987645,0.0002505668,0.05979593,0.9225004],"study_design_scores_gemma":[0.001472285,0.00004203276,0.0000102347,0.007730104,0.002270077,0.00006026328,0.00001161679,3.30055e-7,0.000007365664,0.0000158027,0.987976,0.0004038931],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001559373,0.9807202,0.00002460782,0.001749695,0.0004533275,0.001234349,0.00009454496,0.0001050523,0.01546226],"genre_scores_gemma":[0.0001401067,0.8437377,0.0002132002,0.0001019917,0.0003467428,0.0001437818,0.0007942864,0.00009700999,0.1544252],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.92818,"threshold_uncertainty_score":0.9996991,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1555082803","doi":"10.1186/1742-4690-3-15","title":"HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated","year":2006,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":167,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal; Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research; Centre National de la Recherche Scientifique; Cancer Research Society; Association pour la Recherche sur le Cancer","keywords":"Polyadenylation; Transcription (linguistics); Retrovirus; Exon; Biology; Gene isoform; RNA splicing; Messenger RNA; Long terminal repeat; Antisense RNA; RNA; Alternative splicing; Genetics; Gene; Molecular biology; Virology; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.01123085807187943,"gpt":0.213887283094651,"spread":0.2026564250227716,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002395969,0.0002249877,0.0003873256,0.0001557807,0.0002756941,0.00001670187,0.0001985917,0.0003054355,0.00004847733],"category_scores_gemma":[0.0000576972,0.0001549009,0.00006814152,0.0001852725,0.0004799954,0.00006116194,0.00005825284,0.0005228426,0.00007482283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002198252,"about_ca_system_score_gemma":0.00001567024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00122362,"about_ca_topic_score_gemma":0.0007449773,"domain_scores_codex":[0.9983035,0.0004454239,0.0003421158,0.0003636063,0.00004205092,0.0005032814],"domain_scores_gemma":[0.9993358,0.0002811745,0.0001558828,0.0001860429,0.00002914648,0.00001199696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001999068,0.0001574295,0.2017176,0.00002359758,0.0001080672,0.0001600611,0.001623622,0.000005496517,0.7914261,0.00204047,0.001149963,0.001387682],"study_design_scores_gemma":[0.003378465,0.0004671194,0.9608572,0.0000319176,0.00007487354,0.0004877645,0.00151029,0.00001366845,0.01944529,0.0006857425,0.01270106,0.0003465853],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866688,0.008454678,0.00003070393,0.001526975,0.0003535268,0.0002124564,0.00003298534,0.00005568478,0.002664197],"genre_scores_gemma":[0.9981806,0.0002672202,0.00002346943,0.0007795856,0.00007702208,0.00001726322,0.00002918784,0.00001628267,0.0006093941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7719808,"threshold_uncertainty_score":0.6316674,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146943626","doi":"10.1186/1742-4690-11-41","title":"Differential binding of neutralizing and non-neutralizing antibodies to native-like soluble HIV-1 Env trimers, uncleaved Env proteins, and monomeric subunits","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Aids Fonds; National Institutes of Health; International AIDS Vaccine Initiative","keywords":"Antigenicity; Trimer; Epitope; Immunogen; Chemistry; Glycoprotein; Gp41; Protein subunit; Antibody; Glycan; Plasma protein binding; Protein structure; Biochemistry; Biology; Dimer; Immunology; Monoclonal antibody","retraction":null,"screen_n_in":null,"score":{"opus":0.01443357038737107,"gpt":0.2475113739447813,"spread":0.2330778035574102,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002371205,0.0002742812,0.0006170683,0.0003860092,0.0002880116,0.00002225671,0.000163766,0.0002503691,0.00007323352],"category_scores_gemma":[0.00008676302,0.0002392891,0.00006716159,0.0001692382,0.000460448,0.0000991768,0.0002337497,0.0003132261,0.0000747009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003695002,"about_ca_system_score_gemma":0.00004090825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002759227,"about_ca_topic_score_gemma":0.00004760922,"domain_scores_codex":[0.9980502,0.0003881825,0.0003314211,0.0004909733,0.00005367479,0.0006855588],"domain_scores_gemma":[0.9992054,0.0002638524,0.0001391044,0.0002408883,0.0000479436,0.0001028539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004598692,0.000113414,0.1033481,0.00007827111,0.000305726,0.000007929752,0.000890962,0.000003364274,0.89066,0.0003285349,0.0003452459,0.003458647],"study_design_scores_gemma":[0.01040419,0.006435113,0.3233254,0.0001493433,0.0002697369,0.0001538814,0.0008212787,0.00009365195,0.638114,0.0001064219,0.01926014,0.0008668112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971296,0.0008935211,0.000468137,0.0003363726,0.0002183956,0.0005433075,0.00005880426,0.0000378612,0.0003139526],"genre_scores_gemma":[0.9982192,0.0003259459,0.0002759228,0.00006161078,0.00003067207,0.00004656087,0.0001299986,0.00002544475,0.0008846713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2525459,"threshold_uncertainty_score":0.9757925,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121429599","doi":"10.1186/1742-4690-10-16","title":"Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?","year":2013,"lang":"en","type":"review","venue":"Retrovirology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":147,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; University of Winnipeg","funders":"","keywords":"Endogenous retrovirus; Transcription factor; Epigenetics; Retrovirus; Long terminal repeat; Genome; Biology; Transcription (linguistics); Genetics; Promoter; Endogeny; Computational biology; Gene; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.1027754539244905,"gpt":0.2717709372094307,"spread":0.1689954832849402,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001816199,0.0004409315,0.001135321,0.00004791493,0.0002757533,0.00007281266,0.0004000578,0.0007647559,0.0005733276],"category_scores_gemma":[0.00008249168,0.000166295,0.0006773521,0.0002261747,0.00006126725,0.00008071354,0.00005553868,0.0003194455,0.000126426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001050333,"about_ca_system_score_gemma":0.00004813566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009057597,"about_ca_topic_score_gemma":0.0001603133,"domain_scores_codex":[0.9978863,0.0002191286,0.0006088772,0.000585619,0.0001560208,0.0005440522],"domain_scores_gemma":[0.9988744,0.0004351429,0.0003657231,0.0001278161,0.0000557552,0.0001411841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001001523,0.00008524673,0.0001932369,0.001397008,0.0001418504,0.000004673385,0.0000831842,2.043673e-7,0.0154782,0.0002668323,0.0001802099,0.9821593],"study_design_scores_gemma":[0.0001369141,0.0007228923,0.0003774877,0.0002550152,0.0003407338,0.00004809817,0.00001279422,0.000007702971,0.00003074239,0.0002437262,0.9974656,0.0003583576],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02002575,0.9756369,0.00002182317,0.0000813865,0.0005738437,0.002514748,0.0007903267,0.0001487756,0.0002064243],"genre_scores_gemma":[0.006033029,0.9900382,0.00008728511,0.00003968982,0.001062969,0.0005805673,0.00174779,0.000008048325,0.0004024401],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9972853,"threshold_uncertainty_score":0.6781315,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113654810","doi":"10.1186/1742-4690-8-52","title":"The role of unintegrated DNA in HIV infection","year":2011,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":145,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Provirus; Integrase; Virology; Biology; Reverse transcriptase; DNA; Viral replication; Chromatin; Genome; Gene; Virus; Genetics; Human immunodeficiency virus (HIV); RNA","retraction":null,"screen_n_in":null,"score":{"opus":0.02314585287335347,"gpt":0.2898293690325497,"spread":0.2666835161591963,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000331857,0.0002544126,0.001009028,0.0002754542,0.00008903175,0.000004038889,0.0002803639,0.0007710874,0.000354481],"category_scores_gemma":[0.0001372318,0.0001443652,0.0002573802,0.0002677186,0.0004353233,0.00002029063,0.0000963565,0.0007886468,0.002495773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001087387,"about_ca_system_score_gemma":0.0002455102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007195451,"about_ca_topic_score_gemma":0.000538473,"domain_scores_codex":[0.997654,0.00109534,0.0004886035,0.000279571,0.00002158332,0.0004609352],"domain_scores_gemma":[0.9988797,0.0003909451,0.0002568226,0.0004119998,0.00004053253,0.00002002019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007031859,0.0001300041,0.001328169,0.0002786656,0.0004553877,0.000008506564,0.00003965296,3.250111e-8,0.000105824,0.00297911,0.0004839348,0.9941204],"study_design_scores_gemma":[0.0003374778,0.000387054,0.0003471223,0.0003065613,0.000138562,0.00007432489,0.000009183239,1.002436e-7,0.0001039176,0.0001784872,0.9980198,0.00009737987],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000539329,0.9943672,0.000002018516,0.00001079064,0.0002120286,0.0004413686,0.00009568137,0.00002217362,0.004309444],"genre_scores_gemma":[0.002640968,0.9947352,0.00000293648,0.000003367478,0.00001393873,0.0001293348,0.0005819852,0.0000214711,0.001870801],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9975359,"threshold_uncertainty_score":0.9982809,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064647506","doi":"10.1186/1742-4690-7-55","title":"Semen-mediated enhancement of HIV infection is donor-dependent and correlates with the levels of SEVI","year":2010,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":137,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Deutsche Forschungsgemeinschaft; Baden-Württemberg Stiftung","keywords":"Semen; Infectivity; Prostatic acid phosphatase; Virology; Tropism; Lentivirus; Immunology; Sexual transmission; Biology; Virus; Human immunodeficiency virus (HIV); Microbicide; Viral disease; Prostate; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.008557116582004235,"gpt":0.2349073714479887,"spread":0.2263502548659845,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002117063,0.0001082564,0.0002249597,0.00007313815,0.00007486995,0.000002745101,0.00008377472,0.0001812653,0.001063447],"category_scores_gemma":[0.00003992836,0.00006301214,0.00003105408,0.00007313947,0.0005051075,0.00002895766,0.00006368607,0.0003157135,0.000148863],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001191701,"about_ca_system_score_gemma":0.0000496961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001652295,"about_ca_topic_score_gemma":0.0002624852,"domain_scores_codex":[0.9992449,0.0001244728,0.0001779326,0.0001802001,0.00004270884,0.0002298334],"domain_scores_gemma":[0.9993457,0.0002108182,0.0001343095,0.0002216177,0.00006729326,0.0000202625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000277765,0.0001381595,0.2305437,0.00001820137,0.000352052,0.000002715845,0.0003978765,8.994962e-7,0.7652405,0.000173991,0.000592433,0.002261687],"study_design_scores_gemma":[0.00347825,0.003122303,0.3984743,0.00001306842,0.0001169549,0.0001070705,0.00008716209,0.000008201177,0.5830923,0.00006749501,0.01130315,0.0001297753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977213,0.0004769754,0.0001316859,0.0007652289,0.000117862,0.0002338644,0.0001070634,0.00001035486,0.000435701],"genre_scores_gemma":[0.9986069,0.0001881937,0.00002407119,0.00006737719,0.000008605506,0.00002312187,0.00004790074,0.000006773967,0.001027012],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1821482,"threshold_uncertainty_score":0.9998497,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110471430","doi":"10.1186/1742-4690-10-22","title":"Viral fitness cost prevents HIV-1 from evading dolutegravir drug pressure","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":132,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Canadian Foundation for AIDS Research","keywords":"Dolutegravir; Integrase; Integrase inhibitor; Drug resistance; Virology; Medicine; Drug; Antiretroviral therapy; HIV drug resistance; Mutation; Viral evolution; Human immunodeficiency virus (HIV); Pharmacology; Viral load; Genetics; Biology; Gene; Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.00948701864596269,"gpt":0.2476125431875112,"spread":0.2381255245415485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001125831,0.0002698434,0.0005019009,0.0001263393,0.0001027591,0.00002554026,0.0001640654,0.000202549,0.002763292],"category_scores_gemma":[0.00005340426,0.0002162474,0.0001185631,0.0001140802,0.00009771176,0.0001456614,0.00009756679,0.0002983218,0.002491192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009928858,"about_ca_system_score_gemma":0.00008066255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000239611,"about_ca_topic_score_gemma":0.00001817018,"domain_scores_codex":[0.9983378,0.000116802,0.000324442,0.0004715089,0.0002549769,0.0004944542],"domain_scores_gemma":[0.9990846,0.0001195613,0.0001070869,0.0004129513,0.00005458667,0.0002212258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002868242,0.0005484227,0.8690114,0.00007453554,0.001021206,0.0001788556,0.001353301,0.00001147664,0.009131456,0.0002968749,0.1036877,0.01439791],"study_design_scores_gemma":[0.00961812,0.000321453,0.7168429,0.0001817582,0.001079411,0.00009353709,0.0002355985,0.001576895,0.006799357,0.001848326,0.260695,0.0007076683],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988921,0.0006935148,0.0001554203,0.004987262,0.0003443231,0.001044143,0.0000499415,0.0001259985,0.003678393],"genre_scores_gemma":[0.9114894,0.00005081872,0.001520605,0.0005047279,0.0002490481,0.0002095525,0.0003763474,0.00003687779,0.08556268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1570073,"threshold_uncertainty_score":0.9982855,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099164564","doi":"10.1186/1742-4690-7-114","title":"Modulation of HIV-1-host interaction: role of the Vpu accessory protein","year":2010,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Tetherin; Downregulation and upregulation; Virology; Simian immunodeficiency virus; Interferon; Endoplasmic reticulum; Biology; Antiviral protein; Antibody; Human immunodeficiency virus (HIV); Virus; Cell biology; Viral replication; Immunology; Genetics; RNA; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02598733885965507,"gpt":0.3135574541858948,"spread":0.2875701153262397,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001999327,0.0002481412,0.001087402,0.0001873775,0.00007917307,0.00000377085,0.0005090896,0.0009155447,0.0008107329],"category_scores_gemma":[0.0001508774,0.000151291,0.0004316072,0.0001795648,0.0004341995,0.00004803873,0.0002234246,0.001040176,0.0005876445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005810515,"about_ca_system_score_gemma":0.0002391116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006391722,"about_ca_topic_score_gemma":0.00002744623,"domain_scores_codex":[0.9980828,0.000691244,0.0005778138,0.0003016254,0.00005585766,0.0002906395],"domain_scores_gemma":[0.9983603,0.000199058,0.0006784209,0.0006626655,0.00008027361,0.00001926445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001203378,0.0003112556,0.0004656415,0.002066184,0.0007350658,0.000003055339,0.00007335556,8.372264e-7,0.04064847,0.0007398233,0.0002954196,0.9545406],"study_design_scores_gemma":[0.0003590729,0.0002555269,0.0007347608,0.0006439394,0.0002161198,0.00006796691,0.00001050814,6.232559e-7,0.002665884,0.00005116091,0.9948889,0.0001055094],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007232113,0.9894133,0.000006919023,0.00005790931,0.0004377812,0.001068175,0.0003040865,0.00001585889,0.001463891],"genre_scores_gemma":[0.08084558,0.9152752,0.00003268459,0.000008619149,0.00007328608,0.0002304654,0.0005892997,0.00003854119,0.002906299],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9945935,"threshold_uncertainty_score":0.8876956,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147046090","doi":"10.1186/1742-4690-11-15","title":"HIV Nef and Vpu protect HIV-infected CD4+ T cells from antibody-mediated cell lysis through down-modulation of CD4 and BST2","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Victoria Hospital; Université de Montréal; McGill University Health Centre; Royal Victoria Regional Health Centre; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Antibody-dependent cell-mediated cytotoxicity; Epitope; Virology; Antibody; Biology; Immune system; Tetherin; Cell biology; Virus; Cell; Viral envelope; Immunology; Monoclonal antibody; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.005873977137636515,"gpt":0.2262516645814145,"spread":0.220377687443778,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001951835,0.0002338643,0.0005290075,0.000138763,0.0001368309,0.00001180674,0.0001180966,0.0004600022,0.0004294993],"category_scores_gemma":[0.0001337874,0.0001934819,0.00006723289,0.0001472422,0.000460671,0.00008771416,0.000120406,0.0003085936,0.0005663317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002712721,"about_ca_system_score_gemma":0.00003798098,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006169202,"about_ca_topic_score_gemma":0.00004207686,"domain_scores_codex":[0.9980827,0.0005951273,0.0003222842,0.0004913869,0.00005535195,0.0004531231],"domain_scores_gemma":[0.998841,0.0005132014,0.000179778,0.0003488306,0.00006429142,0.00005286469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000296892,0.0001576491,0.09974814,0.0000319868,0.0002002808,0.000006981486,0.0002800258,0.000004716901,0.8973298,0.00007851977,0.0004769721,0.001388006],"study_design_scores_gemma":[0.008926253,0.002419589,0.615703,0.00002890064,0.0002390673,0.00003246521,0.00006948401,0.000271473,0.3543227,0.0009196712,0.01664795,0.0004194531],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954538,0.001620598,0.001004238,0.0003380857,0.0001048913,0.0004445636,0.0003614482,0.00005684733,0.0006154684],"genre_scores_gemma":[0.9968227,0.0005572428,0.0003777429,0.00007036235,0.00003355708,0.00002644263,0.001759377,0.0000197653,0.0003328398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5430071,"threshold_uncertainty_score":0.7889962,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1513718978","doi":"10.1186/1742-4690-3-18","title":"The retrovirus RNA trafficking granule: from birth to maturity","year":2006,"lang":"en","type":"review","venue":"Retrovirology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Canada Research Chairs; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"RNA; Ribonucleoprotein; Biology; Cell biology; Retrovirus; RNA-binding protein; RNA splicing; RNA silencing; Genetics; Gene; RNA interference","retraction":null,"screen_n_in":null,"score":{"opus":0.02111545994434543,"gpt":0.3121638568871639,"spread":0.2910483969428185,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005480381,0.000524135,0.001085144,0.0001365724,0.0003617229,0.0001121959,0.0010792,0.0009222204,0.00002392379],"category_scores_gemma":[0.0003509275,0.0003601838,0.0005753919,0.000271799,0.0001985827,0.000002917752,0.0004310507,0.0008168447,0.0001785356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008314141,"about_ca_system_score_gemma":0.0002824532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000351842,"about_ca_topic_score_gemma":0.0005261081,"domain_scores_codex":[0.9966248,0.0005577837,0.0006295115,0.000930675,0.0003075888,0.0009496836],"domain_scores_gemma":[0.9980364,0.0002068116,0.0002636686,0.001187707,0.0000640292,0.0002414219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001024765,0.00003506627,0.00004269174,0.000492827,0.0002291448,0.00004473679,0.000005469053,0.000004818682,0.003803151,0.00007862246,0.01869216,0.9764689],"study_design_scores_gemma":[0.0001888931,0.0003672111,0.00006576568,0.0002121139,0.0001029876,0.00002792558,0.000004104359,0.000006319892,0.0001661071,0.00002949737,0.9984692,0.0003598724],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01154762,0.986017,0.0001910103,0.0001246033,0.0004371438,0.0006493918,0.0002261081,0.00003625975,0.0007708928],"genre_scores_gemma":[0.00115502,0.9920027,0.0001723371,0.000238448,0.001321714,0.0001176142,0.0006220722,0.0001042384,0.004265828],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.979777,"threshold_uncertainty_score":0.999885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165907518","doi":"10.1186/1742-4690-10-1","title":"Attenuation of multiple Nef functions in HIV-1 elite controllers","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"International Development Research Centre; Canadian Institutes of Health Research; Harvard University Center for AIDS Research; Harvard University; Center for AIDS Research, University of Washington; Bill and Melinda Gates Foundation","keywords":"Viremia; Infectivity; Human immunodeficiency virus (HIV); Viral replication; Immune system; Biology; Virology; Phenotype; Immunology; CD74; Virus; Cell biology; Genetics; Gene; T cell; MHC class II","retraction":null,"screen_n_in":null,"score":{"opus":0.01113199152665109,"gpt":0.2316547561095162,"spread":0.2205227645828651,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001270455,0.00009304667,0.0002439509,0.0001876099,0.00004923042,0.000002777972,0.00008124845,0.0001855045,0.001833917],"category_scores_gemma":[0.0001773626,0.0000778758,0.00006179679,0.0001181445,0.0001817284,0.00006382218,0.0000328964,0.0001915823,0.006785657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004833343,"about_ca_system_score_gemma":0.00003954441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007642538,"about_ca_topic_score_gemma":0.0002078712,"domain_scores_codex":[0.9989802,0.000223531,0.0002411467,0.0001862845,0.0000257332,0.0003431658],"domain_scores_gemma":[0.9993854,0.0002695178,0.00006845871,0.0001953436,0.00005700519,0.00002427937],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002970808,0.0002614436,0.616281,0.000008049055,0.0001576239,0.000004807048,0.0001465736,0.00005666587,0.3668191,0.0003315412,0.005657128,0.009978953],"study_design_scores_gemma":[0.007529252,0.0006224106,0.9658548,0.000009210362,0.00002248071,0.00001760365,0.0001883828,0.0001135237,0.00339606,0.0001176898,0.02201703,0.0001115424],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946491,0.0008583706,0.0003275218,0.001047662,0.0001579995,0.0003925413,0.00006841497,0.00002228778,0.002476113],"genre_scores_gemma":[0.9962082,0.00005239886,0.00006164891,0.00008701186,0.0000120844,0.0001217418,0.0003163493,0.000007150502,0.003133441],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.363423,"threshold_uncertainty_score":0.9990785,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106118201","doi":"10.1186/1742-4690-4-71","title":"Detection, characterization and regulation of antisense transcripts in HIV-1","year":2007,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec; Université du Québec à Montréal","funders":"Canadian Institutes of Health Research","keywords":"Jurkat cells; Transfection; HEK 293 cells; Molecular biology; Biology; Antisense RNA; Luciferase; Retrovirus; Transcription (linguistics); Cell culture; Virology; Provirus; Gene; Messenger RNA; Virus; T cell; Genetics; Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.00701624349220519,"gpt":0.2037734511514554,"spread":0.1967572076592502,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002500835,0.0000939156,0.0002270669,0.0002097926,0.0000640265,0.000001625049,0.00003904603,0.000251648,0.00003919914],"category_scores_gemma":[0.00003347023,0.00008552608,0.00002948653,0.0001395176,0.0002387751,0.00004976,0.00001867698,0.0001404458,0.00002057399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001495967,"about_ca_system_score_gemma":0.000008610221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005531139,"about_ca_topic_score_gemma":0.0001903444,"domain_scores_codex":[0.9992128,0.00008411743,0.0002877274,0.0001819612,0.00001848634,0.0002149313],"domain_scores_gemma":[0.9996986,0.00006092791,0.0001025602,0.000095746,0.00003216524,0.00001000634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002556536,0.00003620703,0.08240147,0.00001553529,0.00002262104,0.000002305783,0.0003357731,7.000816e-7,0.9041401,0.0003260531,0.00000928456,0.01245431],"study_design_scores_gemma":[0.0007343396,0.0001675912,0.6808206,0.000006009707,0.0000128317,0.00003771393,0.00004680849,0.000004168949,0.3138263,0.00003687146,0.004245381,0.00006138086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940826,0.0007209443,0.004304065,0.0001103005,0.0003726843,0.0001112621,0.00001070973,0.00002389466,0.0002635729],"genre_scores_gemma":[0.9987525,0.0001854834,0.00002318666,0.00005140831,0.00002181239,0.000002199799,0.000042525,0.000007542201,0.0009133457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5984191,"threshold_uncertainty_score":0.3487653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2887170399","doi":"10.1186/s12977-018-0440-3","title":"Selective resistance profiles emerging in patient-derived clinical isolates with cabotegravir, bictegravir, dolutegravir, and elvitegravir","year":2018,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; McGill University; BC Children's Hospital; Jewish General Hospital","funders":"Université de Montréal; McGill University; Genome Canada; Gilead Sciences","keywords":"Elvitegravir; Dolutegravir; Raltegravir; Integrase inhibitor; Virology; Biology; Integrase; Drug resistance; Microbiology; Medicine; Viral load; Virus; Human immunodeficiency virus (HIV); Antiretroviral therapy","retraction":null,"screen_n_in":null,"score":{"opus":0.01119201152111467,"gpt":0.2854821367145856,"spread":0.274290125193471,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003741127,0.0004498803,0.0008897909,0.0004050914,0.0001922909,0.00002730331,0.0001194475,0.000357865,0.00006443407],"category_scores_gemma":[0.0001819129,0.0003241942,0.00009731278,0.0006619878,0.000798772,0.0001314907,0.00007786871,0.0006385666,0.00006463449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000125735,"about_ca_system_score_gemma":0.0002594305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001071045,"about_ca_topic_score_gemma":0.001504925,"domain_scores_codex":[0.9970714,0.0002891774,0.0007229229,0.0009244903,0.000254352,0.0007376077],"domain_scores_gemma":[0.9986401,0.0002404644,0.0002361996,0.0004241537,0.0001991306,0.0002600104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00390153,0.0004968437,0.9678158,0.00005767694,0.0003430703,0.0004014545,0.002167944,2.963439e-7,0.01306906,0.0005549847,0.001071502,0.01011984],"study_design_scores_gemma":[0.01066688,0.006128537,0.941735,0.0004500377,0.0003646198,0.0003102837,0.001190847,0.0001606159,0.01079135,0.001203193,0.02609848,0.0009002096],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933679,0.0009191979,0.0001149512,0.002301166,0.0001450554,0.0008590649,0.00001561954,0.0001085359,0.002168532],"genre_scores_gemma":[0.986122,0.000405934,0.009776194,0.0005008306,0.0001661692,0.0001040713,0.00006270291,0.0000617071,0.002800412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02608085,"threshold_uncertainty_score":0.999921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1490329041","doi":"10.1186/1742-4690-1-23","title":"Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably?","year":2004,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University; McGill University; Jewish General Hospital","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"RNA; Genome; Computational biology; Context (archaeology); Human immunodeficiency virus (HIV); Biology; Genetics; Virus; Viral life cycle; Virology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03194444059960346,"gpt":0.3222709761049877,"spread":0.2903265355053842,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002481641,0.0006143804,0.00185469,0.0003298689,0.0002372706,0.00002701678,0.0004651344,0.001297809,0.001223473],"category_scores_gemma":[0.0001942761,0.0004784632,0.0006853645,0.0002366072,0.0002981744,0.00007128839,0.0001598479,0.0006840469,0.01680242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003307727,"about_ca_system_score_gemma":0.0006736088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003088311,"about_ca_topic_score_gemma":0.000005647022,"domain_scores_codex":[0.9968956,0.0004193674,0.0006675467,0.0009187965,0.00006306569,0.001035628],"domain_scores_gemma":[0.9983813,0.0002936057,0.0004071248,0.0007175076,0.0001244273,0.00007609055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002921033,0.0005861073,0.0001414227,0.02109453,0.003940253,0.00006051794,0.000170925,9.0558e-7,0.0004494737,0.00146985,0.04196103,0.9298329],"study_design_scores_gemma":[0.001565852,0.001064459,0.00001208982,0.001593805,0.0007938514,0.0001346843,0.000002058352,4.227863e-7,0.00005405573,0.0001404843,0.9942703,0.0003678899],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001340775,0.992478,0.0007325928,0.0001667806,0.0006651851,0.002698683,0.001970343,0.0001186561,0.001156358],"genre_scores_gemma":[0.00006556861,0.9736561,0.0003283499,0.0001608493,0.0001511933,0.001132926,0.01014207,0.0001007469,0.01426225],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9523093,"threshold_uncertainty_score":0.9999987,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152129968","doi":"10.1186/1742-4690-10-11","title":"Cellular and molecular mechanisms involved in the establishment of HIV-1 latency","year":2013,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Latency (audio); Virus latency; Immunology; Gene silencing; Latent Virus; Human immunodeficiency virus (HIV); Biology; Viral replication; Medicine; Neuroscience; Virology; Virus; Genetics; Computer science; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02369436381320772,"gpt":0.2702228268941396,"spread":0.2465284630809318,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004853363,0.0003415782,0.001315769,0.0002934279,0.0000528173,0.00001202214,0.0004642491,0.0007159308,0.0003978646],"category_scores_gemma":[0.0000700114,0.0002021311,0.0002132912,0.0002033625,0.0003017198,0.00003393771,0.0001891189,0.0006875049,0.000850564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005441517,"about_ca_system_score_gemma":0.0001325484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001530355,"about_ca_topic_score_gemma":0.00001621977,"domain_scores_codex":[0.9971516,0.001306722,0.0005280689,0.000431321,0.00006332216,0.0005189402],"domain_scores_gemma":[0.9988329,0.0003294085,0.0002319416,0.0005454506,0.00003029753,0.00003002968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008283437,0.001537753,0.0003967805,0.0102166,0.002463077,0.0009021713,0.0007070556,5.587819e-7,0.01495963,0.02609548,0.005656241,0.9369818],"study_design_scores_gemma":[0.0009992064,0.0009119293,0.00004779211,0.0005472808,0.0004658323,0.0001097545,0.00008606628,4.303566e-7,0.0005889987,0.0008756935,0.9951063,0.0002607346],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001922954,0.9960679,0.00007670622,0.0001202295,0.0001124185,0.001184371,0.0001128496,0.00001213931,0.0003904601],"genre_scores_gemma":[0.00528582,0.9930875,0.00008871262,0.00005730284,0.000008633462,0.000326344,0.0008056436,0.00002567612,0.0003143898],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.98945,"threshold_uncertainty_score":0.9999274,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171270480","doi":"10.1186/1742-4690-4-87","title":"Compartmentalization of the gut viral reservoir in HIV-1 infected patients","year":2007,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Viral quasispecies; Biology; Virology; Viral replication; Virus; Gene; Viral evolution; Genome; Genetics; Hepatitis C virus","retraction":null,"screen_n_in":null,"score":{"opus":0.00917022424308706,"gpt":0.2543644636730613,"spread":0.2451942394299742,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002065881,0.0000854161,0.0001702436,0.0001230416,0.00006196523,0.00000172597,0.0001594984,0.0001566961,0.0002269927],"category_scores_gemma":[0.0001067649,0.00005864704,0.00004835887,0.0001901419,0.0002356562,0.00003282194,0.0001016038,0.0001792466,0.000303523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000851334,"about_ca_system_score_gemma":0.00002948927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001244808,"about_ca_topic_score_gemma":0.000436756,"domain_scores_codex":[0.9989697,0.0002614881,0.0002528796,0.0001475491,0.00004194397,0.0003264224],"domain_scores_gemma":[0.9995289,0.0001105169,0.00008567616,0.0002184986,0.0000412875,0.00001508899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002761372,0.0003490063,0.9467743,0.000004969787,0.00003906784,0.000002832293,0.0001009952,0.00000713225,0.05050107,0.000495097,0.001049228,0.0004001483],"study_design_scores_gemma":[0.00260669,0.0003945413,0.969838,0.000006184048,0.000007909885,0.000003553787,0.00001857161,0.000002009768,0.02248079,0.00006339535,0.004532028,0.00004635606],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975784,0.0001329793,0.00003078684,0.0001260725,0.0001884542,0.0002718572,0.000050854,0.00001287171,0.001607707],"genre_scores_gemma":[0.9990114,0.000009622133,0.00001322388,0.00005513924,0.000006330362,0.00000729784,0.0003672858,0.00000612849,0.0005235653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02802028,"threshold_uncertainty_score":0.3901276,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026939674","doi":"10.1186/1742-4690-8-99","title":"Inhibition of HIV-1 endocytosis allows lipid mixing at the plasma membrane, but not complete fusion","year":2011,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Health Sciences Centre","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Endocytosis; Fusion; Human immunodeficiency virus (HIV); Lipid bilayer fusion; Membrane; Medicine; Mixing (physics); Plasma; Antibody; Cell biology; Virology; Chemistry; Biochemistry; Immunology; Biology; Internal medicine; Physics; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.03332974615429515,"gpt":0.2342562523981368,"spread":0.2009265062438417,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002636619,0.0001812694,0.0003421674,0.0001315915,0.0002804688,0.00000359096,0.0002037332,0.0002593526,0.003940611],"category_scores_gemma":[0.00008103764,0.0001229424,0.0001441696,0.0001016801,0.0005817504,0.00004803414,0.0002518935,0.0003023954,0.003824364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007179185,"about_ca_system_score_gemma":0.00003882455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005231558,"about_ca_topic_score_gemma":0.0002959344,"domain_scores_codex":[0.9983048,0.0004769218,0.0003240338,0.0003208088,0.00006498825,0.0005083945],"domain_scores_gemma":[0.9990261,0.0003288287,0.0001549981,0.0003987341,0.0000534422,0.00003791858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001270014,0.0001574246,0.006321392,0.0000178625,0.000205288,0.00002905526,0.0005919306,0.000001872643,0.9871593,0.0003107073,0.001661217,0.002274005],"study_design_scores_gemma":[0.002759625,0.001086474,0.01749847,0.00001368924,0.0000739231,0.0002075443,0.0001252575,0.000009997496,0.9497914,0.00002754007,0.02827041,0.0001356133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912301,0.0003316606,0.00003921935,0.000424322,0.0002558582,0.0003042592,0.000337101,0.0000397623,0.007037664],"genre_scores_gemma":[0.995574,0.0002137313,0.00008628646,0.0001926378,0.0000327171,0.00004690441,0.0004327814,0.00001633921,0.003404594],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03736778,"threshold_uncertainty_score":0.9969699,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051122335","doi":"10.1186/1742-4690-7-31","title":"Host hindrance to HIV-1 replication in monocytes and macrophages","year":2010,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Université de Montréal; Sidaction; Institut National de la Santé et de la Recherche Médicale; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Monocyte; Viral replication; Permissiveness; Biology; Immunology; Virus; Immune system; Macrophage; In vitro; In vivo; Virology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02423636418642084,"gpt":0.329912453151296,"spread":0.3056760889648752,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002861947,0.0003201339,0.001153532,0.0003779926,0.00008125774,0.00001441515,0.0003011399,0.0009264217,0.0002223136],"category_scores_gemma":[0.0002557013,0.0002543998,0.0001120465,0.0002049452,0.0002168359,0.00003351348,0.0001840434,0.0009736018,0.00514981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009066758,"about_ca_system_score_gemma":0.0001150824,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007690628,"about_ca_topic_score_gemma":0.0001058054,"domain_scores_codex":[0.9978797,0.0003663398,0.000397127,0.0008024766,0.00002806285,0.0005262882],"domain_scores_gemma":[0.9986742,0.0003065356,0.0001375163,0.0007990029,0.00002332995,0.00005939566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004436715,0.00007422942,0.0006369421,0.0006147202,0.00009462961,0.00004867056,0.00004879132,3.741303e-8,0.001130102,0.0001352332,0.00105782,0.9961144],"study_design_scores_gemma":[0.000452394,0.0002874493,0.001749936,0.0003047108,0.00007655773,0.000221295,0.00000329515,8.740956e-8,0.0001091209,0.00001400686,0.9965944,0.000186703],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003904754,0.9939988,0.000009768357,0.0002853546,0.0001916374,0.000894549,0.0002619391,0.00003697109,0.0004161774],"genre_scores_gemma":[0.001539846,0.9942561,0.0001096188,0.00007193333,0.00004053356,0.0003879334,0.0006037126,0.00003363144,0.002956713],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9959278,"threshold_uncertainty_score":0.9999908,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045183567","doi":"10.1186/1742-4690-6-11","title":"HIV-1 exploits importin 7 to maximize nuclear import of its DNA genome","year":2009,"lang":"en","type":"article","venue":"Retrovirology","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Wellcome Trust","keywords":"Nuclear transport; Importin; Biology; Integrase; Virology; Reverse transcriptase; Viral replication; DNA; Nuclear localization sequence; Provirus; Cell nucleus; RNA; Virus; Genome; Cell biology; Gene; Genetics; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.006162908518255798,"gpt":0.2154926512874497,"spread":0.2093297427691939,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001095786,0.0001450945,0.0002309933,0.0000721426,0.0000401987,0.000005926916,0.0001813631,0.0002349561,0.0001828647],"category_scores_gemma":[0.00006557982,0.0001413941,0.00009928914,0.00009348797,0.00003420794,0.000003859075,0.0000727706,0.00009562133,0.00009588794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001177707,"about_ca_system_score_gemma":0.00002412734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002436505,"about_ca_topic_score_gemma":0.000001810479,"domain_scores_codex":[0.9989671,0.00003362482,0.0002852612,0.0003426714,0.00009585371,0.0002754676],"domain_scores_gemma":[0.9993479,0.00000336057,0.0001255265,0.000362382,0.00005178771,0.0001090995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003177378,0.00003068913,0.00113028,0.000006093125,0.00002453259,0.00000728844,0.00004435373,0.00002261594,0.9939505,0.0003138697,0.002444159,0.001707823],"study_design_scores_gemma":[0.001577877,0.006903332,0.297513,0.000008947662,0.00007904118,0.0002210966,0.0001008687,0.00004569429,0.228104,0.0003660202,0.4644468,0.0006333365],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958517,0.0001829684,0.000165964,0.0006840712,0.0001588381,0.0001475596,0.00001697146,0.00002110683,0.002770833],"genre_scores_gemma":[0.9961816,0.00008228832,0.0006737438,0.002157766,0.0002822415,0.000002601027,0.00006557155,0.00002425521,0.000529944],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7658466,"threshold_uncertainty_score":0.5765885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168648244","doi":"10.1186/s12977-015-0159-3","title":"Long lasting control of viral rebound with a new drug ABX464 targeting Rev – mediated viral RNA biogenesis","year":2015,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Viral replication; Viral load; Raltegravir; Virology; Medicine; RNA; Drug; Viral entry; Integrase inhibitor; Viral shedding; Virus; Biology; Antiretroviral therapy; Pharmacology; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0122279793184836,"gpt":0.2367434725305003,"spread":0.2245154932120167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005650292,0.0002608905,0.0006014387,0.0002039719,0.0001339793,0.00001228825,0.0002607871,0.0002762509,0.0002314677],"category_scores_gemma":[0.000533437,0.0001960328,0.00009928735,0.0001919482,0.0004530647,0.00009551756,0.00008916658,0.0003484958,0.0006979654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001004436,"about_ca_system_score_gemma":0.0004029026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001702592,"about_ca_topic_score_gemma":0.0003149509,"domain_scores_codex":[0.9977829,0.0004863425,0.000429213,0.0004227553,0.0001053454,0.0007734681],"domain_scores_gemma":[0.9987327,0.0004016195,0.0002575027,0.0003080911,0.000149496,0.0001505542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005745612,0.0003545849,0.434902,0.00005024202,0.00153037,0.0002796896,0.0008984472,0.00007129823,0.5371392,0.0002362146,0.01201239,0.006779985],"study_design_scores_gemma":[0.1301625,0.03035261,0.2380341,0.0003599881,0.001807552,0.001531068,0.001954173,0.0004667496,0.5066801,0.001171124,0.08441448,0.003065589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908112,0.005806385,0.0012867,0.0006770761,0.000236049,0.0003470569,0.0001214964,0.00008633036,0.0006276894],"genre_scores_gemma":[0.9975032,0.0000513728,0.0003654537,0.0001373376,0.00008487323,0.00002187253,0.0003388983,0.00003179443,0.001465151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1968679,"threshold_uncertainty_score":0.8971166,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2517479804","doi":"10.1186/s12977-016-0293-6","title":"New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy","year":2016,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Université du Québec à Montréal; Centre Hospitalier Universitaire Sainte-Justine; Caprion (Canada); Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Persistence (discontinuity); Antiretroviral therapy; Medicine; Human immunodeficiency virus (HIV); Virology; Immunology; Data science; Viral load; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.01694001695659333,"gpt":0.2551682758850042,"spread":0.2382282589284109,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002423957,0.000194569,0.0003567406,0.0001181212,0.0003306108,0.000008114201,0.000437884,0.0002044699,0.0002996076],"category_scores_gemma":[0.0001915047,0.00009943872,0.000148571,0.0001546081,0.0003357838,0.00006856795,0.0002193585,0.0001842734,0.001241404],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000918437,"about_ca_system_score_gemma":0.0001005021,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002632928,"about_ca_topic_score_gemma":0.0001324612,"domain_scores_codex":[0.9981245,0.0003988092,0.0002867828,0.0003824983,0.0000700474,0.0007373075],"domain_scores_gemma":[0.9989302,0.0003063551,0.0001146664,0.0004978703,0.00007355802,0.00007739845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006855971,0.00005221752,0.1932247,0.000004381316,0.00023172,0.00002056778,0.0008006769,6.652994e-7,0.7892727,0.0002034067,0.0003183049,0.01518505],"study_design_scores_gemma":[0.003946825,0.001726233,0.3429765,0.00002408206,0.00002196975,0.00006278189,0.0001011114,4.018408e-7,0.6386002,0.00008025925,0.01229426,0.0001654033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925816,0.004207725,0.0004424726,0.001995959,0.0001984458,0.0003148195,0.00003342839,0.00003791776,0.0001876118],"genre_scores_gemma":[0.9981325,0.0004147186,0.00005748009,0.0001451203,0.00004870856,0.00001936274,0.00002097959,0.00001402611,0.001147124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1506725,"threshold_uncertainty_score":0.9995362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145161673","doi":"10.1186/1742-4690-4-75","title":"Requirements for the selective degradation of CD4 receptor molecules by the human immunodeficiency virus type 1 Vpu protein in the endoplasmic reticulum","year":2007,"lang":"en","type":"article","venue":"Retrovirology","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Endoplasmic-reticulum-associated protein degradation; Endoplasmic reticulum; Ubiquitin; Cytosol; Cell biology; Ubiquitin ligase; Protein degradation; Biology; Proteasome; Mutant; Biochemistry; Chemistry; Unfolded protein response; Enzyme","retraction":null,"screen_n_in":null,"score":{"opus":0.01816392811840444,"gpt":0.2771395457521008,"spread":0.2589756176336964,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001297518,0.0001328517,0.0001242113,0.00003300768,0.0002013143,0.00001193206,0.0004452016,0.000160636,0.00001370701],"category_scores_gemma":[0.0002663177,0.00007448949,0.00006967597,0.0001719643,0.0002297496,0.000003886317,0.00006206521,0.0001767574,0.000004020316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002036827,"about_ca_system_score_gemma":0.00004569381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001027001,"about_ca_topic_score_gemma":0.0001313051,"domain_scores_codex":[0.9987685,0.0002511465,0.0002828862,0.0002479638,0.0001412268,0.0003082405],"domain_scores_gemma":[0.9992334,0.0001039866,0.0001790131,0.000376966,0.00009117633,0.0000154044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002652404,0.00006725153,0.0006476537,0.000009008038,0.00002722648,3.418005e-7,0.0001557057,0.000003638635,0.995484,0.001489355,0.0007395819,0.001111001],"study_design_scores_gemma":[0.0004631861,0.001181152,0.001653936,0.000006122541,0.00001843174,0.000008015964,0.0002173843,0.00003012444,0.9788772,0.0002929425,0.01715759,0.00009395162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942634,0.001112196,0.001767085,0.0004092157,0.00008615182,0.001130882,0.00003337599,0.000005554622,0.001192153],"genre_scores_gemma":[0.9987947,0.00006832057,0.0001895865,0.0003378421,0.00006349265,0.0001452295,0.0001145866,0.00001574732,0.0002704746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01660684,"threshold_uncertainty_score":0.3037593,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155233217","doi":"10.1186/1742-4690-7-115","title":"Tetherin restricts direct cell-to-cell infection of HIV-1","year":2010,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Human immunodeficiency virus (HIV); Medicine; Tetherin; Cell; Antibody; Virology; Immunology; Biology; Genetics; Viral envelope","retraction":null,"screen_n_in":null,"score":{"opus":0.00726314141430208,"gpt":0.2367652782074818,"spread":0.2295021367931797,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001812331,0.0001299309,0.000251658,0.0001987316,0.00007960257,0.000003775505,0.0001429253,0.0003171898,0.001018696],"category_scores_gemma":[0.0001170626,0.000109746,0.00007584183,0.0001750075,0.0001653639,0.00002796746,0.00008258638,0.0004370488,0.005141767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002181677,"about_ca_system_score_gemma":0.00006303702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000474631,"about_ca_topic_score_gemma":0.0001453122,"domain_scores_codex":[0.9989235,0.0001886026,0.0001920824,0.0002659972,0.00003358595,0.000396217],"domain_scores_gemma":[0.999299,0.0001782817,0.00007358766,0.0003505046,0.00004625346,0.00005240296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001610299,0.0002710577,0.1294572,0.00001279404,0.00003687285,0.00001004766,0.00008084883,0.000005454257,0.8625556,0.00005463193,0.005436863,0.001917536],"study_design_scores_gemma":[0.001808043,0.00170077,0.1523889,0.000003019073,0.0000295652,0.00003211321,0.000008963302,0.000001341361,0.650617,0.00003127622,0.1932451,0.0001338522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9742945,0.0002319775,0.00004928978,0.0002190512,0.000485894,0.0002208841,0.0000590554,0.0000486085,0.02439073],"genre_scores_gemma":[0.9934101,0.00008044926,0.0001448702,0.00005678447,0.00003290875,0.00002943454,0.00008599603,0.00001457975,0.006144914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2119386,"threshold_uncertainty_score":0.9998945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125094932","doi":"10.1186/s12977-014-0129-1","title":"The highly polymorphic cyclophilin A-binding loop in HIV-1 capsid modulates viral resistance to MxB","year":2015,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université du Québec à Montréal; Jewish General Hospital","funders":"National Institutes of Health; Canadian Institutes of Health Research; Canadian Foundation for AIDS Research","keywords":"Cypa; Capsid; Cyclophilin A; Virology; Biology; Mutation; Viral replication; Amino acid; V3 loop; Phenotype; Genetics; Virus; Molecular biology; Peptide sequence; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01652669800236984,"gpt":0.2531328555665941,"spread":0.2366061575642243,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005720558,0.0002075095,0.0003205424,0.0002075463,0.0002303047,0.00002191889,0.0004121559,0.0002759928,0.00006901423],"category_scores_gemma":[0.0003644929,0.0001479895,0.00006561721,0.0002542152,0.0003128862,0.00006188747,0.0001749377,0.0004500831,0.006229917],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001874875,"about_ca_system_score_gemma":0.0001458093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002355811,"about_ca_topic_score_gemma":0.001312674,"domain_scores_codex":[0.997771,0.000487595,0.0003229223,0.0004271651,0.00007444604,0.0009169309],"domain_scores_gemma":[0.9990003,0.0002864136,0.00006823942,0.0004833682,0.00005259283,0.0001090717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.008981533,0.0007341625,0.3277246,0.00003175135,0.0007012913,0.0009865976,0.002367913,0.0002664916,0.5521806,0.01606266,0.08239003,0.007572324],"study_design_scores_gemma":[0.01644112,0.004240445,0.2676202,0.00009397234,0.00009558185,0.0003574474,0.0009832961,0.00004069934,0.09896979,0.005935622,0.6039213,0.001300512],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984194,0.004930818,0.0000224075,0.007922818,0.0004531507,0.0003352047,0.0000775674,0.00005355712,0.002010442],"genre_scores_gemma":[0.9799477,0.0001034027,0.00007296989,0.000221126,0.00005103295,0.00008122178,0.0001237989,0.00002085787,0.01937785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5215313,"threshold_uncertainty_score":0.9945439,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110299975","doi":"10.1186/1742-4690-10-100","title":"Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"National Institute of Mental Health; Canadian Institutes of Health Research; Mbarara University of Science and Technology; Inyuvesi Yakwazulu-Natali; International Development Research Centre; Massachusetts General Hospital; Michael Smith Health Research BC; Department of Science and Technology, Ministry of Science and Technology, India; University of Oxford; Harvard University; Simon Fraser University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute","keywords":"Downregulation and upregulation; Human leukocyte antigen; Immunology; In vitro; Virology; Biology; Flow cytometry; Western blot; Medicine; Gene; Genetics; Antigen","retraction":null,"screen_n_in":null,"score":{"opus":0.005660410682771913,"gpt":0.2194527792362513,"spread":0.2137923685534794,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000151696,0.0001647317,0.0003735477,0.0001240268,0.00008520451,0.000008691176,0.0001585381,0.0002754079,0.0009346879],"category_scores_gemma":[0.0001001385,0.0001277355,0.00006978311,0.00008145886,0.000723319,0.00006921435,0.0001524097,0.0002240337,0.001642607],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004124651,"about_ca_system_score_gemma":0.00002950474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006607468,"about_ca_topic_score_gemma":0.0000582871,"domain_scores_codex":[0.9985831,0.0002754504,0.0002452838,0.0003571835,0.00003732083,0.0005016688],"domain_scores_gemma":[0.9992644,0.00018013,0.00006374705,0.0003505632,0.00005627633,0.00008487665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002140221,0.0001159941,0.5177411,0.00001809008,0.0001607929,0.000005546514,0.0001681104,0.000002174135,0.4741649,0.0003588682,0.002991275,0.00405916],"study_design_scores_gemma":[0.001111407,0.001019299,0.9811704,0.000004808777,0.00002420949,0.00001764442,0.00004069638,0.000007061798,0.01432222,0.0004296491,0.001742479,0.0001101767],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969248,0.0004292569,0.0000298928,0.001101519,0.0001092541,0.0004367608,0.0000676288,0.00003356893,0.0008672979],"genre_scores_gemma":[0.998292,0.00003331546,0.00008013208,0.0001150947,0.00001433565,0.00005958631,0.00008178411,0.00001130379,0.001312458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4634293,"threshold_uncertainty_score":0.9999786,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2791456925","doi":"10.1186/s12977-018-0392-7","title":"Beyond the replication-competent HIV reservoir: transcription and translation-competent reservoirs","year":2018,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Heart, Lung, and Blood Institute; Fonds de Recherche du Québec - Santé; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Provirus; Transcription (linguistics); Computational biology; Human immunodeficiency virus (HIV); Biology; Replication (statistics); Translation (biology); Viral replication; Computer science; Virology; Virus; Messenger RNA; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0526248614505328,"gpt":0.3130451790318863,"spread":0.2604203175813535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001069664,0.0005996159,0.001469941,0.0003236183,0.0006552662,0.00005121455,0.0008069662,0.0009956657,0.0007192722],"category_scores_gemma":[0.0001346148,0.0003760294,0.0005481058,0.0003352006,0.00116532,0.00009401456,0.0001425017,0.001127426,0.003260843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000156461,"about_ca_system_score_gemma":0.0002676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007367649,"about_ca_topic_score_gemma":0.0001331379,"domain_scores_codex":[0.9951148,0.001756089,0.0009225143,0.001230042,0.0001310288,0.0008455214],"domain_scores_gemma":[0.9967614,0.0008735905,0.0003567682,0.001801391,0.000113191,0.00009368008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004515148,0.0004938414,0.0002761271,0.004314336,0.003715927,0.00005741064,0.0009206323,0.000001272602,0.001232847,0.004129096,0.04934906,0.9350579],"study_design_scores_gemma":[0.0009199744,0.0006256445,0.0001593037,0.0003680487,0.0007558182,0.0003691973,0.00003493213,0.000003165461,0.00003436285,0.0003017167,0.9961205,0.0003073562],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006896187,0.9920635,0.00005143164,0.00226443,0.0005051742,0.001768682,0.0005613399,0.0001000634,0.001995724],"genre_scores_gemma":[0.0009035586,0.9905721,0.0001369955,0.0001271785,0.0001883922,0.0006380462,0.003565469,0.00007002523,0.003798228],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9467714,"threshold_uncertainty_score":0.9998692,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138739411","doi":"10.1186/1742-4690-8-95","title":"Human HERC5 restricts an early stage of HIV-1 assembly by a mechanism correlating with the ISGylation of Gag","year":2011,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Western University","funders":"Genome Institute of Singapore; Canadian Institutes of Health Research; Ontario HIV Treatment Network; University of Pennsylvania","keywords":"ISG15; Ubiquitin ligase; Human immunodeficiency virus (HIV); Cell biology; Virology; Biology; Viral replication; Interferon; Mechanism (biology); Group-specific antigen; Gene; Virus; Ubiquitin; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0260833820271594,"gpt":0.2532392717229061,"spread":0.2271558896957467,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002657052,0.0001227734,0.0002517896,0.00008930868,0.0001361277,0.000002867371,0.0002024071,0.0002145493,0.0003441213],"category_scores_gemma":[0.00003177394,0.00007879627,0.00004282098,0.0001159415,0.0002872093,0.00007333942,0.00004860426,0.0002774351,0.00009055246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002172523,"about_ca_system_score_gemma":0.00004573859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001171185,"about_ca_topic_score_gemma":0.0001426619,"domain_scores_codex":[0.998749,0.0004531101,0.000228994,0.0002116852,0.00005450496,0.0003027422],"domain_scores_gemma":[0.9992329,0.0001058609,0.0002336474,0.0003322022,0.00006881,0.0000266081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004971421,0.0003470431,0.08497962,0.00001669685,0.0002668676,0.00001490824,0.001636158,0.000002621159,0.9027885,0.008256952,0.0005112292,0.0006822259],"study_design_scores_gemma":[0.005683513,0.02146675,0.5258618,0.00003030318,0.0001704972,0.00005229965,0.00126306,0.00002385675,0.443076,0.0005109656,0.00154604,0.0003149256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967757,0.0002214978,0.0005494276,0.00005504022,0.00003632569,0.0002476632,0.00009981458,0.00002096387,0.001993604],"genre_scores_gemma":[0.9961976,0.00001236741,0.000131474,0.0000216666,0.000005599232,0.0000177556,0.0001193551,0.00001392695,0.003480254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4597125,"threshold_uncertainty_score":0.3767887,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2346013961","doi":"10.1186/s12977-016-0267-8","title":"Characterization of novel Bovine Leukemia Virus (BLV) antisense transcripts by deep sequencing reveals constitutive expression in tumors and transcriptional interaction with viral microRNAs","year":2016,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; Saskatchewan Health Authority","funders":"Amis de l'Institut Bordet; Fonds De La Recherche Scientifique - FNRS","keywords":"Bovine leukemia virus; microRNA; Virology; Biology; Leukemia; Virus; Gene; Computational biology; Molecular biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0116393855171854,"gpt":0.2124214858097981,"spread":0.2007821002926127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001578423,0.0002433146,0.0004946334,0.0001955398,0.0001194046,0.000005380093,0.00009237935,0.0002926305,0.00006721874],"category_scores_gemma":[0.00003668971,0.0001622804,0.00005513236,0.0001015774,0.0008367315,0.000233365,0.00002995932,0.0002574337,0.000009922108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001791449,"about_ca_system_score_gemma":0.00007722152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001956069,"about_ca_topic_score_gemma":0.000162973,"domain_scores_codex":[0.9985464,0.0001820232,0.0004572776,0.000415733,0.00004873459,0.0003498368],"domain_scores_gemma":[0.999418,0.0001056548,0.0002505287,0.0001350596,0.00006315502,0.00002764742],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001904616,0.00009673119,0.009866705,0.00003168348,0.00007796336,0.000009878571,0.0007881473,0.000002201147,0.9860063,0.0003489386,0.00003396732,0.000832902],"study_design_scores_gemma":[0.004405512,0.0008599766,0.03788904,0.0002380233,0.00004668245,0.0002681914,0.0001866898,0.000006737201,0.9546528,0.00002160399,0.001192532,0.0002322115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924842,0.0009769856,0.005284073,0.0001880754,0.0002979811,0.0002491449,0.0003718426,0.00003145673,0.000116306],"genre_scores_gemma":[0.9987686,0.0004791233,0.0001028303,0.0001324317,0.000023021,0.00001730555,0.0001394212,0.00001732304,0.0003199677],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03135347,"threshold_uncertainty_score":0.6617603,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152043347","doi":"10.1186/1742-4690-2-65","title":"Dual role of TRBP in HIV replication and RNA interference: viral diversion of a cellular pathway or evasion from antiviral immunity?","year":2005,"lang":"en","type":"article","venue":"Retrovirology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Canadian Foundation for AIDS Research","keywords":"Evasion (ethics); Human immunodeficiency virus (HIV); Virology; Dual (grammatical number); Viral replication; RNA interference; Replication (statistics); Immunity; microRNA; Medicine; Computational biology; RNA; Immunology; Biology; Immune system; Virus; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02317443219431537,"gpt":0.2409828573070122,"spread":0.2178084251126968,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002631391,0.00008575198,0.0002376526,0.00003435615,0.00005468141,0.00000502079,0.0001572658,0.0001087804,0.0000823591],"category_scores_gemma":[0.0001584138,0.00003497474,0.00003360139,0.0001378453,0.0001623904,0.0001034018,0.0002550147,0.0001471586,0.000007328767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002100453,"about_ca_system_score_gemma":0.000007856984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001016995,"about_ca_topic_score_gemma":0.0007146151,"domain_scores_codex":[0.9990386,0.0001941127,0.0002274803,0.0002339028,0.000132344,0.0001735309],"domain_scores_gemma":[0.9994597,0.0002776029,0.0001152649,0.00008529248,0.00003415736,0.00002797977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000414561,0.00007955566,0.0272224,0.000003868191,0.000007918595,0.000002522909,0.0002086755,6.251823e-7,0.928655,0.00003908679,0.00003449042,0.04333128],"study_design_scores_gemma":[0.0003885944,0.001099103,0.3847221,0.00002982481,0.000007124527,0.000001737502,0.0004885604,0.0005450302,0.6112502,0.0003020418,0.001072125,0.00009350325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987012,0.0004186756,0.000002355123,0.000326307,0.00001261748,0.0001145864,0.0002516859,0.000009438216,0.0001631246],"genre_scores_gemma":[0.9992938,0.0004327838,0.0000536858,0.00001969445,0.00004305743,0.000004202604,0.00009577464,5.419751e-7,0.00005644234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3574997,"threshold_uncertainty_score":0.1537398,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132585743","doi":"10.1186/1742-4690-11-7","title":"The M50I polymorphic substitution in association with the R263K mutation in HIV-1 subtype B integrase increases drug resistance but does not restore viral replicative fitness","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"National Institutes of Health; Canadian Institutes of Health Research; Canadian Foundation for AIDS Research","keywords":"Integrase; Virology; Human immunodeficiency virus (HIV); Integrase inhibitor; Genetics; Mutation; Drug resistance; Substitution (logic); Medicine; Amino acid substitution; Drug; Biology; Antiretroviral therapy; Viral load; Gene; Pharmacology","retraction":null,"screen_n_in":null,"score":{"opus":0.005441236661451402,"gpt":0.2259729518336836,"spread":0.2205317151722322,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001055617,0.0001725457,0.0002779397,0.0001396336,0.0001808515,0.00002006032,0.0001248225,0.0001266262,0.0000116308],"category_scores_gemma":[0.0009449021,0.00008461226,0.00003888964,0.0003057235,0.0002079893,0.0000894519,0.00002687329,0.0003460337,0.0000322507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006666779,"about_ca_system_score_gemma":0.0001543795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004762374,"about_ca_topic_score_gemma":0.01140212,"domain_scores_codex":[0.9982772,0.0004995719,0.0003050058,0.0003395012,0.0002745004,0.0003042307],"domain_scores_gemma":[0.998366,0.0008698066,0.0002648609,0.0003582333,0.00009415211,0.00004697643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00271249,0.000176874,0.9842539,0.00002158293,0.00008574189,0.00008421966,0.001372063,0.00001228286,0.001481661,0.00809825,0.000942378,0.000758505],"study_design_scores_gemma":[0.003474929,0.0002094807,0.9823686,0.0001126327,0.0001220781,0.0000217683,0.0008239471,0.0002809799,0.007487063,0.0007753269,0.004129712,0.0001934283],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9621035,0.0001742758,0.000102674,0.03662408,0.0000632281,0.0004564654,0.000009349971,0.00003525641,0.0004311219],"genre_scores_gemma":[0.9904464,0.00007514402,0.0001335907,0.0003210383,0.00007419059,0.0001656607,0.0001048691,0.00001511295,0.008663937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03630304,"threshold_uncertainty_score":0.636265,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150538842","doi":"10.1186/1742-4690-5-41","title":"The host protein Staufen1 interacts with the Pr55Gagzinc fingers and regulates HIV-1 assembly via its N-terminus","year":2008,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"N-terminus; RNA; C-terminus; Biology; Mutant; Zinc finger; Cell biology; Chemistry; Peptide sequence; Virology; Biochemistry; Transcription factor; Gene; Amino acid","retraction":null,"screen_n_in":null,"score":{"opus":0.01005038384232718,"gpt":0.2209776585765303,"spread":0.2109272747342032,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002479648,0.0002098079,0.0002395785,0.00005902969,0.0008928737,0.00002467349,0.000282844,0.0001796042,0.00008691709],"category_scores_gemma":[0.0001085754,0.00009906721,0.00004797999,0.0001018094,0.0009704743,0.00007840875,0.0001108731,0.00047441,0.0006494027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004483061,"about_ca_system_score_gemma":0.00009270835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006131061,"about_ca_topic_score_gemma":0.000148802,"domain_scores_codex":[0.9983597,0.0004462379,0.0001768875,0.0003315194,0.00006062388,0.0006250036],"domain_scores_gemma":[0.9989002,0.0004923386,0.000108585,0.0003866704,0.0000651713,0.00004706358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00322635,0.0002964319,0.01223872,0.00003342818,0.001194957,0.001118315,0.002166828,0.000003863129,0.9503515,0.0006690148,0.01569035,0.01301023],"study_design_scores_gemma":[0.007641277,0.008690546,0.3134655,0.00007290793,0.0001612233,0.009355186,0.0006186368,0.00004511787,0.340831,0.00009078661,0.3182913,0.0007365928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890207,0.00343193,0.00002590544,0.005857727,0.00008072014,0.0006339347,0.0000272059,0.00004340037,0.0008784689],"genre_scores_gemma":[0.9880342,0.0001906298,0.00002214198,0.0001896445,0.00002994932,0.000135022,0.00004481151,0.00001948356,0.01133412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6095206,"threshold_uncertainty_score":0.8346975,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130048636","doi":"10.1186/1742-4690-8-47","title":"Differential effect of CLK SR Kinases on HIV-1 gene expression: potential novel targets for therapy","year":2011,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Ontario HIV Treatment Network","keywords":"Viral replication; RNA; Biology; Kinase; Gene expression; Virology; Virus; P-TEFb; Gene; Cell biology; Promoter; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0217066065368252,"gpt":0.2567239458012174,"spread":0.2350173392643922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001207906,0.0002282571,0.0004544174,0.0001340971,0.0001336803,0.000003178652,0.0002329682,0.0003343537,0.001926963],"category_scores_gemma":[0.00006425448,0.0001543212,0.000222029,0.00004340491,0.0002736147,0.0000300982,0.00006712294,0.0001984623,0.0003311147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002212115,"about_ca_system_score_gemma":0.0000305578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002968583,"about_ca_topic_score_gemma":0.000002336274,"domain_scores_codex":[0.998566,0.0002673485,0.0002379748,0.0003699676,0.0000492519,0.0005094303],"domain_scores_gemma":[0.999204,0.0002551972,0.0001147469,0.0003394704,0.00004324993,0.00004333103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.009988325,0.0007049792,0.005192133,0.00001835335,0.0003369256,0.00001560039,0.00009548621,0.000001156275,0.9774965,0.0001270268,0.001685701,0.004337796],"study_design_scores_gemma":[0.00814615,0.01065322,0.01522682,0.000008869471,0.00004348403,0.00003118969,0.000005283843,0.000001832246,0.9630975,0.00003929065,0.002625894,0.0001204831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947219,0.001114937,0.002166755,0.00006193571,0.0005735222,0.0006177215,0.0004089446,0.00003893606,0.0002952766],"genre_scores_gemma":[0.9982361,0.0001592695,0.0002162544,0.0000452543,0.00007618569,0.0001689108,0.0005099914,0.00002309474,0.0005648927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01439904,"threshold_uncertainty_score":0.9989854,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2133919090","doi":"10.1186/1742-4690-10-96","title":"The PKR activator, PACT, becomes a PKR inhibitor during HIV-1 replication","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"RNA regulation and disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Faculty of Medicine, McGill University; McGill University; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Protein kinase R; Pact; Activator (genetics); Interferon; EIF-2 kinase; Biology; Small hairpin RNA; Molecular biology; Viral replication; Protein kinase A; Antiviral protein; Cell biology; RNA; Phosphorylation; Virology; Virus; Cyclin-dependent kinase 2; Biochemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.005261296341085971,"gpt":0.2267331645317724,"spread":0.2214718681906864,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009043825,0.0001127988,0.0000931812,0.00002790489,0.0001875101,0.00003758326,0.0001639839,0.0001463037,0.00009074629],"category_scores_gemma":[0.0001954296,0.00008401223,0.00007773675,0.00005640903,0.0001085406,0.000007633596,0.00008741598,0.00007674158,0.0001599973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001981248,"about_ca_system_score_gemma":0.00003872776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001442473,"about_ca_topic_score_gemma":0.000007050476,"domain_scores_codex":[0.9990968,0.00007980329,0.0001735572,0.0003265208,0.00008325662,0.0002400907],"domain_scores_gemma":[0.999039,0.00002354014,0.00009833397,0.0006769751,0.00005580111,0.000106327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001112124,0.0000368275,0.05191087,0.000007244051,0.00003299215,0.000001102958,0.00001586446,0.00001077161,0.9331267,0.0002804789,0.01205965,0.002406308],"study_design_scores_gemma":[0.0009010332,0.0001755039,0.7517532,0.00000321557,0.0000156659,0.00003014395,0.0000630479,0.0001316354,0.13443,0.0003298121,0.1119458,0.0002209526],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949269,0.0003098886,0.0001030916,0.003446219,0.0001182619,0.0002095759,0.000005504669,0.00002542098,0.0008551477],"genre_scores_gemma":[0.9949738,0.0001009371,0.00005554163,0.0004752809,0.0003092415,0.00008178091,0.00006449784,0.00001727911,0.00392164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7986966,"threshold_uncertainty_score":0.3425919,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063764327","doi":"10.1186/1742-4690-11-45","title":"HIV-1 Vpr stimulates NF-κB and AP-1 signaling by activating TAK1","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"School of Medicine, Indiana University; Center for AIDS Research, University of Washington; Higher Education Discipline Innovation Project; National Institutes of Health; Keio University; Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences; Directorate for Biological Sciences; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Gene knockdown; Phosphorylation; Cell biology; Activator (genetics); Mutant; Transcription factor; Ubiquitin ligase; Ubiquitin; Signal transduction; Kinase; NF-κB; NFKB1; IκB kinase; Biology; Gene; Chemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.004927175682872586,"gpt":0.208955850062912,"spread":0.2040286743800394,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003650291,0.000187094,0.0002380682,0.00006426434,0.00007108803,0.00001846496,0.0001568839,0.0002928085,0.00002476942],"category_scores_gemma":[0.0003062005,0.0001916657,0.0000441064,0.00007157925,0.0001161533,0.00000459944,0.0001225896,0.0001940837,0.00001403556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001445695,"about_ca_system_score_gemma":0.00002271556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002600879,"about_ca_topic_score_gemma":0.000006854792,"domain_scores_codex":[0.9986534,0.0001563694,0.0002388264,0.0004797028,0.00008738574,0.0003842886],"domain_scores_gemma":[0.9994208,0.0001019728,0.0001033163,0.0002636846,0.00002865186,0.00008155492],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000561649,0.00002492301,0.02907897,0.00001501678,0.00001769411,0.000002733525,0.0000412986,0.000376114,0.9680843,0.00009394951,0.0004664947,0.001742386],"study_design_scores_gemma":[0.001293644,0.0007134178,0.002571815,0.00002055742,0.00001465047,0.00002985942,0.00003787663,0.002872086,0.9755296,0.0003345996,0.01621575,0.0003661106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944267,0.0005058381,0.004147512,0.0002056626,0.00007761765,0.0001002824,0.00001255992,0.00002297013,0.0005008454],"genre_scores_gemma":[0.9977002,0.00003129461,0.001205456,0.0005344052,0.0001926516,0.00001070672,0.000091406,0.00003420584,0.0001996597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02650716,"threshold_uncertainty_score":0.7815902,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1855068291","doi":"10.1186/1742-4690-3-94","title":"Lung cancer induced in mice by the envelope protein of jaagsiekte sheep retrovirus (JSRV) closely resembles lung cancer in sheep infected with JSRV","year":2006,"lang":"en","type":"article","venue":"Retrovirology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Retrovirus; Virology; Pathology; Virus; Adenocarcinoma; Antibody; Merkel cell polyomavirus; Oncogene; Cancer; Immunology; Medicine; Carcinoma; Cell cycle","retraction":null,"screen_n_in":null,"score":{"opus":0.01215408299086639,"gpt":0.2959924269019309,"spread":0.2838383439110645,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004810484,0.0004500653,0.0008010612,0.0004648511,0.0001362811,0.00002659171,0.0004547175,0.0005771468,0.0006105192],"category_scores_gemma":[0.000126995,0.0003503068,0.0001169034,0.001056459,0.0002878812,0.0001872982,0.0001925393,0.0009153553,0.000009159756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006806618,"about_ca_system_score_gemma":0.0005122786,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1002587,"about_ca_topic_score_gemma":0.05847118,"domain_scores_codex":[0.9962747,0.0008271107,0.0008226734,0.0007506679,0.0003045019,0.001020383],"domain_scores_gemma":[0.998539,0.0002628843,0.0004580295,0.0004954108,0.0001546844,0.00009002141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003504085,0.0003910837,0.6714752,0.000221601,0.0001674318,0.0002520424,0.0002921918,0.0004826651,0.3191292,0.0007124265,0.00248576,0.0008864038],"study_design_scores_gemma":[0.005315971,0.00231264,0.9783826,0.0002351435,0.000198472,0.0001045823,0.00006469495,0.002149619,0.008477439,0.0001973792,0.001834322,0.0007271223],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916955,0.00298039,0.00002508453,0.0007585306,0.0002459636,0.001658039,0.0001564358,0.00008365168,0.002396395],"genre_scores_gemma":[0.9975538,0.0001936732,0.00003724069,0.0004413768,0.0001958636,0.001185381,0.00004238141,0.00008434319,0.0002659659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3106517,"threshold_uncertainty_score":0.9998949,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2766733089","doi":"10.1186/s12977-017-0370-5","title":"Reduced antiretroviral drug efficacy and concentration in HIV-infected microglia contributes to viral persistence in brain","year":2017,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire Sainte-Justine; University of Alberta; Université de Montréal; McGill University; University of Calgary; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation; Gilead Sciences","keywords":"Microglia; Medicine; In vivo; Drug; Peripheral blood mononuclear cell; Immunology; Human brain; Viral load; Virology; In vitro; Pharmacology; Biology; Human immunodeficiency virus (HIV); Inflammation","retraction":null,"screen_n_in":null,"score":{"opus":0.01321981137822067,"gpt":0.2712741528217636,"spread":0.258054341443543,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003460774,0.0001869879,0.000405213,0.0001939441,0.0002448746,0.00005166773,0.0002752065,0.0002447344,0.00006406476],"category_scores_gemma":[0.0008808327,0.0001755255,0.00004321372,0.00009067071,0.0004929451,0.0001270284,0.0001582144,0.0003773959,0.0003743302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001429605,"about_ca_system_score_gemma":0.0001047218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006817741,"about_ca_topic_score_gemma":0.000703481,"domain_scores_codex":[0.9981564,0.0003840286,0.0002861241,0.0004706047,0.00003394775,0.0006689329],"domain_scores_gemma":[0.9991674,0.0002586016,0.00009855659,0.0003857028,0.00003594711,0.00005373077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000687415,0.000129523,0.4883349,0.000006224952,0.00004046039,0.00006455291,0.0003361361,0.000001671628,0.5068518,0.000370508,0.0009510097,0.002225794],"study_design_scores_gemma":[0.008014763,0.0008178736,0.9535502,0.00003382565,0.00001314665,0.00002708803,0.00006467312,0.00001310892,0.03506958,0.00005387612,0.002182995,0.0001588359],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992224,0.001008412,0.00001284359,0.00550218,0.0002039489,0.0005536018,0.00006443499,0.00002591654,0.0004047083],"genre_scores_gemma":[0.9984862,0.00006316096,0.00004131881,0.0002756783,0.00001652876,0.00003607473,0.0001436762,0.00001085374,0.0009265151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4717822,"threshold_uncertainty_score":0.7157721,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106245879","doi":"10.1186/1742-4690-3-93","title":"PRMT6 diminishes HIV-1 Rev binding to and export of viral RNA","year":2006,"lang":"en","type":"article","venue":"Retrovirology","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; McGill University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Arginine; Methylation; Mutant; RNA; Methyltransferase; Molecular biology; Messenger RNA; Lysine; Chemistry; Protein methylation; Wild type; RNA-binding protein; Biochemistry; Biology; Amino acid; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.004665678214794156,"gpt":0.2189075988757943,"spread":0.2142419206610001,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009845257,0.0001008356,0.0001525535,0.0000692984,0.00003166962,0.000005085011,0.00007280803,0.0001944491,0.0000217533],"category_scores_gemma":[0.00002965633,0.000105477,0.00004274346,0.00007012624,0.00008118397,0.000002687023,0.00007604872,0.00005267539,0.000007200267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001511427,"about_ca_system_score_gemma":0.00002873764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002120367,"about_ca_topic_score_gemma":0.00003943524,"domain_scores_codex":[0.9992349,0.00003263013,0.0002089854,0.0002721777,0.00006996482,0.0001813623],"domain_scores_gemma":[0.9996163,0.000008533902,0.00009187216,0.0002107874,0.00003026985,0.00004220175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009643184,0.00001626536,0.02252498,0.00001218759,0.00001681014,0.000001539546,0.00001443076,0.0001086401,0.9720049,0.0001254978,0.003807422,0.00127091],"study_design_scores_gemma":[0.0006381099,0.0009299804,0.1482572,0.00001146611,0.00003281756,0.00004487934,0.00001637739,0.00005876335,0.8025657,0.0001275721,0.04710225,0.0002149115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971579,0.0004584406,0.0005640493,0.0002686451,0.0001182845,0.0001261328,0.00001697729,0.000009087252,0.001280515],"genre_scores_gemma":[0.9973356,0.00003757032,0.0006068561,0.00007565447,0.0002588767,0.000009787759,0.00009248359,0.00001608581,0.001567134],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1694392,"threshold_uncertainty_score":0.4301227,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147257015","doi":"10.1186/s12977-015-0197-x","title":"Evidence that the endosomal sorting complex required for transport-II (ESCRT-II) is required for efficient human immunodeficiency virus-1 (HIV-1) production","year":2015,"lang":"en","type":"article","venue":"Retrovirology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"NIHR Cambridge Biomedical Research Centre; Cambridge Institute for Medical Research, University of Cambridge; Medical Research Council; Universitetet i Oslo; McGill University","keywords":"ESCRT; Endosome; Cell biology; Gene knockdown; TSG101; Biology; Viral entry; Mutant; Virology; Virus; Intracellular; Cell culture; Viral replication; Biochemistry; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.08578250582603977,"gpt":0.2936922892699589,"spread":0.2079097834439191,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001041465,0.0002899487,0.0003302471,0.00006958341,0.0008427741,0.00001808287,0.0004111168,0.0003065463,0.00002137646],"category_scores_gemma":[0.0002157593,0.0002409707,0.0003102666,0.0001228908,0.0003244077,0.00001627648,0.00007357279,0.0001378197,0.000003807335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004907854,"about_ca_system_score_gemma":0.0001158643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006332092,"about_ca_topic_score_gemma":0.0001107222,"domain_scores_codex":[0.9977363,0.00008440104,0.0005387278,0.0007861688,0.0002516417,0.0006028042],"domain_scores_gemma":[0.9986144,0.00003147778,0.0003754934,0.0006661264,0.0002180195,0.00009446972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000948646,0.0001324666,0.003279493,0.00004851495,0.00004883299,0.000001398635,0.0009905447,0.000373725,0.9929526,0.0002903387,0.0004592753,0.0004742062],"study_design_scores_gemma":[0.005051197,0.008858346,0.01440482,0.0001092507,0.0005133388,0.0001022602,0.0008624712,0.004972961,0.8053609,0.0009402383,0.1576226,0.001201647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9399619,0.001625851,0.05479499,0.001621883,0.0004772361,0.001290623,0.00007916871,0.00004510433,0.0001032814],"genre_scores_gemma":[0.9951705,0.00008683344,0.0005492105,0.00032085,0.0004942497,0.0002357855,0.002353775,0.00004804877,0.000740701],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1875917,"threshold_uncertainty_score":0.98265,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1545163572","doi":"10.1186/1742-4690-4-14","title":"The HBZ-SP1 isoform of human T-cell leukemia virus type I represses JunB activity by sequestration into nuclear bodies","year":2007,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"Centre National de la Recherche Scientifique; Cancer Research Society; Association pour la Recherche sur le Cancer","keywords":"JUNB; Nuclear localization sequence; Nucleolus; Nuclear protein; bZIP domain; Molecular biology; Human T-lymphotropic virus 1; Gene isoform; Transcription factor; Transfection; Biology; Cell biology; Chemistry; Leukemia; Cell culture; Genetics; Leucine zipper; T-cell leukemia; Cytoplasm; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.009680469090530074,"gpt":0.2495963191360948,"spread":0.2399158500455648,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005702436,0.0002443141,0.0004150553,0.00008370016,0.0008465099,0.00001419359,0.0003276443,0.0005041352,0.0001221756],"category_scores_gemma":[0.0001363135,0.0001727882,0.000113151,0.0001136455,0.001141293,0.00009796324,0.0001985061,0.0005146253,0.0002099701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001304575,"about_ca_system_score_gemma":0.00006186825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001955612,"about_ca_topic_score_gemma":0.001313744,"domain_scores_codex":[0.9984192,0.0001886792,0.0004196565,0.0003699454,0.00006241011,0.0005401158],"domain_scores_gemma":[0.9987161,0.0003597269,0.0003349236,0.0004508243,0.0001106326,0.00002781994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005422333,0.0001037819,0.003628342,0.00002914674,0.000144858,0.000004134897,0.000603573,0.00000107644,0.9761863,0.001440921,0.01486451,0.002451141],"study_design_scores_gemma":[0.001145326,0.001660717,0.02228461,0.00001208005,0.0001141494,0.00002560331,0.0006407555,0.000002656449,0.8136937,0.001281909,0.1587953,0.0003432258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9833445,0.005432288,0.00005983362,0.0001854835,0.0007841517,0.0001771464,0.00002025406,0.00009130797,0.009905027],"genre_scores_gemma":[0.9949586,0.001464299,0.0000575076,0.0001247633,0.00005602122,0.000005087151,0.00003960763,0.00002567792,0.003268372],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1624926,"threshold_uncertainty_score":0.70461,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2399342261","doi":"10.1186/s12977-016-0270-0","title":"CRISPR/Cas9: a double-edged sword when used to combat HIV infection","year":2016,"lang":"en","type":"article","venue":"Retrovirology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"CRISPR; SWORD; Human immunodeficiency virus (HIV); Medicine; Virology; Cas9; Computational biology; Biology; Immunology; Bioinformatics; Genetics; Computer science; World Wide Web; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01370862665907602,"gpt":0.2996128818741972,"spread":0.2859042552151212,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000138548,0.0001764115,0.0001863802,0.00009013958,0.00005259601,0.00001247232,0.0001476776,0.0002398526,0.0001062137],"category_scores_gemma":[0.00007122391,0.0001412887,0.00008838691,0.00007332516,0.00004955675,0.000003495165,0.000131506,0.00008103874,0.0001780282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002611761,"about_ca_system_score_gemma":0.00002776859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003288303,"about_ca_topic_score_gemma":0.00013684,"domain_scores_codex":[0.9989097,0.00004532219,0.0001915785,0.0004012019,0.00008850238,0.000363738],"domain_scores_gemma":[0.9993185,0.00002051725,0.00004022501,0.0004301666,0.00004792013,0.0001427027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00021927,0.00002897824,0.02733324,0.000009086717,0.00004037401,0.000003737595,0.00006217436,0.00009345885,0.9613472,0.0001053195,0.007634869,0.003122346],"study_design_scores_gemma":[0.002738314,0.00101008,0.04284349,0.00001569388,0.00003423084,0.00005248656,0.00001010374,0.00002921327,0.6838244,0.0001187041,0.2689345,0.0003887567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9020609,0.0001615313,0.09521166,0.00136251,0.0003983791,0.0001887977,0.000008937129,0.00004486285,0.0005624159],"genre_scores_gemma":[0.9966049,0.00006292656,0.0005134176,0.0004039653,0.0003675561,0.00004110203,0.00002231817,0.00003286934,0.001950901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2775228,"threshold_uncertainty_score":0.5761586,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2191255018","doi":"10.1186/s12977-015-0226-9","title":"Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach","year":2015,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre; Université du Québec à Montréal; Centre Hospitalier de l’Université de Montréal; Caprion (Canada); Université de Montréal; Centre hospitalier universitaire de Québec","funders":"Fonds de Recherche du Québec - Santé; Fondation de France; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; Fondation du CHUM; Institut National de la Santé et de la Recherche Médicale; McGill University; Canadian Institutes of Health Research; McGill University Health Centre; Vanderbilt University","keywords":"C-C chemokine receptor type 6; Biology; Cancer research; Genetics; Chemokine receptor; Receptor; Chemokine","retraction":null,"screen_n_in":null,"score":{"opus":0.04655394021542786,"gpt":0.2870981139628942,"spread":0.2405441737474663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000766343,0.00055247,0.002204312,0.0007783398,0.0000754966,0.00001075398,0.0006721744,0.001354085,0.0002589401],"category_scores_gemma":[0.00007288788,0.0004520787,0.0005175439,0.0003652107,0.0004174764,0.00009491794,0.0001234804,0.001054427,0.001038217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005506163,"about_ca_system_score_gemma":0.0007701116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008260824,"about_ca_topic_score_gemma":0.00001925646,"domain_scores_codex":[0.9961556,0.000786602,0.00131602,0.0008486611,0.0001547843,0.0007383107],"domain_scores_gemma":[0.9982395,0.0003117349,0.0005935056,0.0006623555,0.000109165,0.00008377874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001560972,0.02128906,0.01313913,0.04810544,0.01040237,0.0002387273,0.002793227,0.0000793251,0.3737718,0.001540748,0.00382999,0.5232492],"study_design_scores_gemma":[0.004261081,0.0007712845,0.008247528,0.000362423,0.0009973046,0.0002552343,0.00005545873,0.00000394277,0.0003353149,0.00009278554,0.9838266,0.0007910605],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003580997,0.9892761,0.002568207,0.00001967891,0.0003877982,0.001440945,0.001913077,0.00003775194,0.0007754958],"genre_scores_gemma":[0.01624671,0.9650854,0.0001831582,0.00001888232,0.00004526497,0.0003386042,0.01545436,0.00007639934,0.002551201],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9799966,"threshold_uncertainty_score":0.9999424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109309231","doi":"10.1186/1742-4690-10-73","title":"Automethylation of protein arginine methyltransferase 6 (PRMT6) regulates its stability and its anti-HIV-1 activity","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Concordia University; McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Protein arginine methyltransferase 5; Methylation; Protein methylation; Methyltransferase; Arginine; Histone; Mutagenesis; In vitro; Chemistry; Infectivity; In vivo; Enzyme; Molecular biology; Biochemistry; Biology; Amino acid; Virus; Virology; Genetics; DNA; Mutation","retraction":null,"screen_n_in":null,"score":{"opus":0.009911885858899886,"gpt":0.2341703616651103,"spread":0.2242584758062105,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003077019,0.0001897008,0.0003033506,0.00009648295,0.00005386236,0.00001038549,0.0001027326,0.0003920824,0.0001789148],"category_scores_gemma":[0.0001825737,0.0001892314,0.00007516672,0.0001684652,0.0001242629,0.00002084819,0.00006718205,0.0001473032,0.00001357721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002681637,"about_ca_system_score_gemma":0.00006755342,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000399243,"about_ca_topic_score_gemma":0.00001606149,"domain_scores_codex":[0.9985934,0.0002433079,0.0002913559,0.0004734188,0.0001340026,0.0002644728],"domain_scores_gemma":[0.9992061,0.00003385472,0.0001574167,0.000329575,0.000185505,0.0000875597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001290603,0.00006005036,0.003633107,0.00006958635,0.00005848637,3.135516e-7,0.00003419414,0.0001736971,0.9925547,0.00006599924,0.00003206228,0.003188801],"study_design_scores_gemma":[0.0006122097,0.0004412934,0.145337,0.000007773333,0.00002582378,0.000006653932,0.000006490376,0.002134431,0.8508639,0.00008347227,0.000331047,0.0001499002],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960785,0.001426465,0.0008165614,0.0006599674,0.00007287373,0.0007798264,0.00003691405,0.00002462304,0.0001043043],"genre_scores_gemma":[0.9991256,0.0001456598,0.0002498977,0.0000233043,0.00009754151,0.00006139238,0.00007742886,0.0000237005,0.0001954953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1417039,"threshold_uncertainty_score":0.7716632,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116147829","doi":"10.1186/1742-4690-2-62","title":"Contribution of the C-terminal tri-lysine regions of human immunodeficiency virus type 1 integrase for efficient reverse transcription and viral DNA nuclear import","year":2005,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute; University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Integrase; Biology; Viral replication; Nuclear localization sequence; Viral life cycle; Nuclear transport; Reverse transcriptase; Mutant; Viral protein; Virology; DNA; Virus; Transcription (linguistics); Molecular biology; Cell biology; Cell nucleus; Gene; Genetics; RNA","retraction":null,"screen_n_in":null,"score":{"opus":0.01266992466661754,"gpt":0.2654239674979861,"spread":0.2527540428313685,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000220015,0.0001149587,0.00033283,0.0001050701,0.00009905205,0.000002414887,0.00006202508,0.0001066211,0.00004170087],"category_scores_gemma":[0.00007251038,0.0000785468,0.0001238861,0.0001326199,0.0002197014,0.00002769302,0.00001946935,0.0001045289,0.000003546988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008711762,"about_ca_system_score_gemma":0.00005643393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002657936,"about_ca_topic_score_gemma":0.00001846757,"domain_scores_codex":[0.9991239,0.00004641753,0.0003594155,0.0001736098,0.000122153,0.0001745203],"domain_scores_gemma":[0.9994437,0.00003019605,0.0001704678,0.0002027178,0.0001146911,0.00003822653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001432292,0.0007026632,0.004632479,0.00005328003,0.0001323104,0.000008617161,0.0009866272,0.000007008791,0.984614,0.005210353,0.0006899228,0.001530503],"study_design_scores_gemma":[0.04359439,0.01615582,0.2381873,0.0006585764,0.006098923,0.001181,0.00151629,0.009198518,0.6082692,0.001063176,0.07299959,0.001077194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969941,0.0002727666,0.0001017668,0.001918098,0.00007896453,0.0004933511,0.00002029262,0.00001416181,0.0001065121],"genre_scores_gemma":[0.9988542,0.00006001061,0.0002338756,0.00009619789,0.00003120926,0.000009696573,0.00005211091,0.00001082813,0.000651837],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3763448,"threshold_uncertainty_score":0.3203046,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155414077","doi":"10.1186/1742-4690-3-77","title":"The cell biology of HIV-1 and other retroviruses","year":2006,"lang":"en","type":"review","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; McGill University","funders":"National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; American Society for Cell Biology","keywords":"Retrovirus; Presentation (obstetrics); Human immunodeficiency virus (HIV); Biology; Virology; Library science; Computational biology; Virus; Medicine; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.03157593913644416,"gpt":0.3123914328057428,"spread":0.2808154936692987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000359339,0.0004096517,0.001534918,0.0002018383,0.0002259267,0.00001093163,0.0004517022,0.001021955,0.0002086561],"category_scores_gemma":[0.00009550928,0.0002302346,0.0003296926,0.0001514247,0.001451644,0.00001593345,0.0002301637,0.0006711156,0.001460718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000054154,"about_ca_system_score_gemma":0.0001918295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002001766,"about_ca_topic_score_gemma":0.00004933107,"domain_scores_codex":[0.9970628,0.001083528,0.0006454362,0.0004941199,0.00003324597,0.0006808742],"domain_scores_gemma":[0.9975003,0.001375204,0.0004421451,0.0006126392,0.00003608429,0.00003361509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009043084,0.0001845185,0.002206084,0.002042761,0.0009324914,0.00001651632,0.00002439859,8.394095e-8,0.0003968168,0.002219309,0.01600522,0.9758814],"study_design_scores_gemma":[0.000534712,0.0005646762,0.00003905705,0.0001324694,0.0003434048,0.00007532357,0.000005776638,4.575893e-8,0.0001081728,0.00006882095,0.9979582,0.000169356],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003118026,0.9926051,0.000008339925,0.00003512301,0.0002762115,0.000500845,0.0009495309,0.00003082385,0.005282181],"genre_scores_gemma":[0.0007688562,0.9927314,0.00001969126,0.00003089537,0.00005485371,0.00009467936,0.0004428576,0.00004594538,0.005810828],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.981953,"threshold_uncertainty_score":0.9993168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988041293","doi":"10.1186/1742-4690-6-14","title":"Effects of the K65R and K65R/M184V reverse transcriptase mutations in subtype C HIV on enzyme function and drug resistance","year":2009,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Health Research; Gilead Sciences","keywords":"Resistance mutation; Processivity; Reverse transcriptase; Biology; Primer (cosmetics); Molecular biology; Virology; Enzyme; RNA; Chemistry; Biochemistry; Polymerase","retraction":null,"screen_n_in":null,"score":{"opus":0.004459001498142942,"gpt":0.209601705514787,"spread":0.2051427040166441,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001162344,0.0001048746,0.0002109104,0.0001078177,0.00004953918,0.000002923787,0.00002740843,0.00007102502,0.00001277829],"category_scores_gemma":[0.00007420611,0.00007401923,0.00003076326,0.000153512,0.00008939429,0.00002982822,0.000006272811,0.0001487976,0.000007105823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004106113,"about_ca_system_score_gemma":0.00003694125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000740238,"about_ca_topic_score_gemma":0.00006402601,"domain_scores_codex":[0.99931,0.0001007422,0.0001600899,0.0001936126,0.00009732969,0.0001382136],"domain_scores_gemma":[0.9996325,0.0001184433,0.00005216536,0.0001325108,0.00001633782,0.00004801649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01055216,0.002508686,0.7255775,0.001152972,0.000440359,0.0006497549,0.00896415,0.00001702279,0.1759584,0.02175048,0.04024292,0.01218565],"study_design_scores_gemma":[0.005357256,0.0004360959,0.974722,0.0001670322,0.0002422749,0.00001827955,0.00007269849,0.00002485388,0.009150925,0.001310491,0.008387288,0.0001108172],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9856907,0.001021086,0.00002400824,0.01222261,0.00007045249,0.0003581535,0.000004472651,0.00001417543,0.0005943638],"genre_scores_gemma":[0.9925462,0.0001507221,0.000163812,0.0007001979,0.0000175109,0.00001121222,0.0000130191,0.00000639294,0.006390941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2491445,"threshold_uncertainty_score":0.3018417,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101808246","doi":"10.1186/1742-4690-6-5","title":"Microarray study reveals that HIV-1 induces rapid type-I interferon-dependent p53 mRNA up-regulation in human primary CD4+T cells","year":2009,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Université Laval","keywords":"Interferon; Human immunodeficiency virus (HIV); Messenger RNA; Microarray; Medicine; microRNA; Microarray analysis techniques; Antibody; Bioinformatics; Gene expression; Virology; Immunology; Computational biology; Molecular biology; Biology; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02271652059157583,"gpt":0.2742980531319389,"spread":0.2515815325403631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005570612,0.0002990761,0.0005625032,0.0003984787,0.0001818152,0.00002316302,0.0003730997,0.0004135933,0.00124759],"category_scores_gemma":[0.00003063221,0.0002596999,0.00008681517,0.0001872129,0.0001729744,0.0001186963,0.0001208249,0.0006344276,0.001772596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000259471,"about_ca_system_score_gemma":0.00007198256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001043191,"about_ca_topic_score_gemma":0.0001212925,"domain_scores_codex":[0.9972475,0.0008687382,0.0004535637,0.0006190764,0.00009114825,0.0007200143],"domain_scores_gemma":[0.999086,0.0001195854,0.0001597039,0.0005255311,0.00005241187,0.00005677846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007154672,0.001009227,0.08200709,0.000009052182,0.0001522613,0.00006068,0.0008696687,0.000004661919,0.9078246,0.00003868902,0.002535242,0.004773406],"study_design_scores_gemma":[0.005504844,0.00693436,0.8151336,0.0000210004,0.00005545932,0.00004973928,0.0003978906,3.707821e-7,0.1692232,0.0002399126,0.002134242,0.0003053438],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946577,0.001430072,0.00001578912,0.0004290757,0.0005242174,0.0008274073,0.00003383687,0.00006565089,0.002016228],"genre_scores_gemma":[0.9931021,0.00008046469,0.00002605264,0.000278824,0.00005024314,0.0000337556,0.000423049,0.0000207944,0.00598473],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7386013,"threshold_uncertainty_score":0.9999855,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2134250297","doi":"10.1186/1742-4690-10-86","title":"Regulation of host gene expression by HIV-1 TAR microRNAs","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; Université Laval; Centre hospitalier de l'Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"microRNA; Biology; tar (computing); Gene expression; Gene; Regulation of gene expression; Argonaute; Effector; Jurkat cells; Cell biology; Reporter gene; RNA interference; Genetics; RNA; T cell; Immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.007040922737285724,"gpt":0.2205209585028639,"spread":0.2134800357655782,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008631202,0.0001208291,0.0002326588,0.00008524207,0.0000795347,0.000004423362,0.0001476411,0.0002721505,0.004169856],"category_scores_gemma":[0.00004066408,0.00009633776,0.0000613582,0.00006602558,0.0002314672,0.00006840462,0.00007156863,0.0001632501,0.005636531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003965671,"about_ca_system_score_gemma":0.00002611788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001842705,"about_ca_topic_score_gemma":0.000003786568,"domain_scores_codex":[0.9989458,0.0002083437,0.0002237521,0.0002403286,0.00003406834,0.000347763],"domain_scores_gemma":[0.9994296,0.00008723633,0.0001014232,0.0002878624,0.00006079504,0.00003310185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008211554,0.0001126776,0.01382501,0.000006218754,0.00005877443,0.00000143516,0.00006147242,6.673953e-7,0.9182211,0.00003442663,0.06646982,0.001126285],"study_design_scores_gemma":[0.001195537,0.0004260347,0.0687379,0.000005393714,0.00001150096,0.00002541136,0.00001875185,0.000001808589,0.8947179,0.00007144423,0.03471015,0.00007814563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955347,0.002254312,0.0003123231,0.0005562004,0.0001236806,0.0002692559,0.0001600641,0.00003050434,0.0007589728],"genre_scores_gemma":[0.9931994,0.0000909155,0.0003413679,0.00006901714,0.00001688148,0.00004362857,0.000912107,0.00001201659,0.005314661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05491289,"threshold_uncertainty_score":0.9967405,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100275083","doi":"10.1186/1742-4690-10-128","title":"Efficient BST2 antagonism by Vpu is critical for early HIV-1 dissemination in humanized mice","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Antagonism; Human immunodeficiency virus (HIV); Medicine; Virology; Computational biology; Immunology; Biology; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.008217461403078396,"gpt":0.2839060059474153,"spread":0.2756885445443369,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000171597,0.000155489,0.0002765817,0.0001385903,0.000140482,0.00001912013,0.000165157,0.0003174499,0.001334614],"category_scores_gemma":[0.0002435809,0.0001356793,0.00007628931,0.00008334447,0.0002814595,0.00004206605,0.00005360792,0.0002501262,0.0038511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008722681,"about_ca_system_score_gemma":0.00002873575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002311234,"about_ca_topic_score_gemma":0.0000102092,"domain_scores_codex":[0.9985043,0.0001822851,0.0002564006,0.000372896,0.00004041502,0.0006437023],"domain_scores_gemma":[0.9990055,0.0006300419,0.00004127085,0.0001979492,0.00007907525,0.0000461838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003443023,0.0007249044,0.01297028,0.00002917653,0.00009484905,0.00001151492,0.0006168516,0.000001232329,0.9199951,0.001445646,0.05934794,0.004418179],"study_design_scores_gemma":[0.02552762,0.009172287,0.4379802,0.00008431115,0.0002126967,0.0002035864,0.0009408168,0.001277558,0.4172894,0.002159266,0.1036863,0.001465941],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928176,0.001115362,0.0007286898,0.003576095,0.0001849075,0.0006608324,0.0003234366,0.00003677981,0.0005563118],"genre_scores_gemma":[0.9953635,0.00002374478,0.0001301513,0.0002368119,0.00002169329,0.0003272673,0.0004996558,0.00001695522,0.003380256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5027057,"threshold_uncertainty_score":0.9995783,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}