{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":548,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":548,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e2ee3f58331f","filters":{"venue":"The Plant Journal"}},"results":[{"id":"W2125360702","doi":"10.1111/j.1365-313x.2011.04520.x","title":"The family of terpene synthases in plants: a mid‐size family of genes for specialized metabolism that is highly diversified throughout the kingdom","year":2011,"lang":"en","type":"review","venue":"The Plant Journal","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1435,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institute of Food and Agriculture; Max-Planck-Gesellschaft; Genome British Columbia; Genome Canada; U.S. Department of Agriculture; U.S. Department of Energy; National Science Foundation","keywords":"Physcomitrella patens; Biology; Terpene; Gene family; Gene; Genome; Botany; Secondary metabolism; Biochemistry; Biosynthesis; Mutant","authors":[{"name":"Feng Chen","is_ca":false},{"name":"Dorothea Tholl","is_ca":false},{"name":"Jörg Bohlmann","is_ca":true},{"name":"Eran Pichersky","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09409525103428536,"gpt":0.3057812298029385,"spread":0.2116859787686531,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001212968,0.0005466444,0.0003716318,0.0005262094,0.0007040194,0.0007852026,0.0003122241,0.0004273478,0.002705235],"category_scores_gemma":[0.0001447271,0.0001963485,0.0003253595,0.0008662373,0.0002979741,0.0006872588,0.0005646597,0.0006398147,0.003783773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004349061,"about_ca_system_score_gemma":0.0006639216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001281567,"about_ca_topic_score_gemma":0.0008592887,"domain_scores_codex":[0.9998676,0.000009469547,0.000006171249,0.00006266576,0.00003516656,0.00001892543],"domain_scores_gemma":[0.9998996,0.000008401705,0.00002484654,0.000009596348,0.00002742153,0.00003019684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003986287,0.00006550747,0.01213866,0.0009055735,0.00007315661,0.0008631941,0.0003088586,0.001083728,0.6837128,0.005825939,0.009936072,0.2846878],"study_design_scores_gemma":[0.00008297066,0.0002394219,0.09777366,0.0002319957,0.0001756137,0.007436974,0.0003383897,0.002998124,0.1313108,0.008113039,0.7511863,0.0001127087],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.5839236,0.1840113,0.1293661,0.002418023,0.000936484,0.0004403392,0.02927225,0.009013799,0.06061808],"genre_scores_gemma":[0.8197585,0.04651853,0.05130741,0.0007506591,0.0003336685,0.0002543394,0.03460147,0.0003931273,0.04608233],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.002705235,"threshold_uncertainty_score":0.009049952,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1595771770","doi":"10.1111/j.1365-313x.2005.02399.x","title":"Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation‐induced senescence in Arabidopsis","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1066,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Max-Planck-Gesellschaft; Biotechnology and Biological Sciences Research Council; Deutsche Forschungsgemeinschaft; University of East Anglia","keywords":"Senescence; Biology; Transcriptome; Arabidopsis; Gene expression; Jasmonic acid; Cell biology; Gene; Gene expression profiling; Genetics; Mutant","authors":[{"name":"Vicky Buchanan‐Wollaston","is_ca":false},{"name":"Tania Page","is_ca":false},{"name":"Elizabeth Harrison","is_ca":false},{"name":"Emily Breeze","is_ca":false},{"name":"Pyung Ok Lim","is_ca":false},{"name":"Hong Gil Nam","is_ca":false},{"name":"Ji‐Feng Lin","is_ca":false},{"name":"Shu‐Hsing Wu","is_ca":false},{"name":"Jodi A. Swidzinski","is_ca":true},{"name":"Kimitsune Ishizaki","is_ca":false},{"name":"Christopher J. Leaver","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05415711795825242,"gpt":0.257525074985653,"spread":0.2033679570274006,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001005212,0.0001681229,0.0002168635,0.0003329101,0.0001650801,0.0002617325,0.00008775569,0.000151848,0.0005620345],"category_scores_gemma":[0.0001089596,0.0001249094,0.0003370744,0.000296963,0.0001306022,0.000165568,0.000146646,0.0002574504,0.0002133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002499955,"about_ca_system_score_gemma":0.000189484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000735386,"about_ca_topic_score_gemma":0.000962727,"domain_scores_codex":[0.9999294,0.000006268533,0.000005562035,0.00002328698,0.00001717923,0.00001823158],"domain_scores_gemma":[0.9999071,0.0000176216,0.0000223066,0.000009068774,0.00001626287,0.00002769099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000107439,0.000005741097,0.001112967,0.00002454617,0.000006147503,0.00003069112,0.00003447278,0.00001590621,0.997563,0.00002324914,0.00001719669,0.001058659],"study_design_scores_gemma":[0.00003086562,0.0004835812,0.7647538,0.00002203131,0.00009321542,0.0007183945,0.0002760672,0.0007866541,0.2277845,0.0003183649,0.004707877,0.00002464967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942777,0.001556355,0.001405955,0.00004513962,0.00001199876,0.00001256357,0.001847456,0.00004002536,0.0008029172],"genre_scores_gemma":[0.9876729,0.00114825,0.001696809,0.0001540996,0.0000111542,0.00004655519,0.007346406,0.00003397081,0.00188982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000735386,"threshold_uncertainty_score":0.001880229,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115831900","doi":"10.1111/j.1365-313x.2005.02371.x","title":"Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over‐expressing an MYB transcription factor","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1001,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Phenomenome Discoveries (Canada)","funders":"Core Research for Evolutional Science and Technology; RIKEN; Japan Science and Technology Agency","keywords":"Biology; Transcriptome; Arabidopsis; Metabolome; Gene; Functional genomics; MYB; Flavonoid biosynthesis; Gene expression profiling; Genetics; Metabolomics; Transcription factor; Gene expression; Mutant; Genomics; Genome; Bioinformatics","authors":[{"name":"Takayuki Tohge","is_ca":false},{"name":"Yasutaka Nishiyama","is_ca":false},{"name":"Masami Yokota Hirai","is_ca":false},{"name":"Mitsuru Yano","is_ca":false},{"name":"Jun‐ichiro Nakajima","is_ca":false},{"name":"Motoko Awazuhara","is_ca":false},{"name":"Eri Inoue","is_ca":false},{"name":"Hideki Takahashi","is_ca":false},{"name":"Dayan B. Goodenowe","is_ca":true},{"name":"Masahiko Kitayama","is_ca":false},{"name":"Masaaki Noji","is_ca":false},{"name":"Mami Yamazaki","is_ca":false},{"name":"Kazuki Saito","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01921156516553094,"gpt":0.2387822804676231,"spread":0.2195707153020922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008518608,0.0003969633,0.0002262557,0.0003420121,0.0001175089,0.0001622745,0.0001137633,0.0001474509,0.0004453525],"category_scores_gemma":[0.00005272503,0.000130494,0.0003643693,0.0002801479,0.00007626223,0.0001616231,0.000135546,0.0002346821,0.0001816868],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002363793,"about_ca_system_score_gemma":0.0001585535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008425862,"about_ca_topic_score_gemma":0.0009875031,"domain_scores_codex":[0.9999384,0.000005271468,0.000003206213,0.00002685685,0.00001525046,0.00001100773],"domain_scores_gemma":[0.9999676,0.00000499712,0.000008325273,0.000003570156,0.000007753927,0.000007822765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003131304,0.000003680228,0.0002148122,0.00001620992,0.000004158029,0.00001056286,0.000005719128,0.00003918376,0.9989184,0.00001361126,0.000009427522,0.0007329101],"study_design_scores_gemma":[0.00002558433,0.000332002,0.1573933,0.00001145122,0.0001203999,0.0004666261,0.00007993041,0.005555052,0.8325189,0.0003112033,0.003161921,0.0000236631],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780489,0.001256879,0.01293883,0.00008744977,0.00001600671,0.00004523575,0.006574398,0.0001893796,0.0008429458],"genre_scores_gemma":[0.9644023,0.0009839716,0.01914379,0.0001120268,0.0000160897,0.0001251688,0.01330561,0.00008434252,0.001826733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008425862,"threshold_uncertainty_score":0.001715064,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1954784702","doi":"10.1111/j.1365-313x.2005.02437.x","title":"The Botany Array Resource: e‐Northerns, Expression Angling, and promoter analyses","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":775,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Resource (disambiguation); Web resource; Set (abstract data type); Computer science; Arabidopsis thaliana; World Wide Web; Expression (computer science); Graphics; The Internet; Microarray analysis techniques; Interface (matter); Information retrieval; Database; Computational biology; Bioinformatics; Gene; Biology; Gene expression; Genetics; Computer graphics (images)","authors":[{"name":"Kiana Toufighi","is_ca":true},{"name":"Siobhán M. Brady","is_ca":true},{"name":"Ryan E Austin","is_ca":true},{"name":"Eugene Ly","is_ca":false},{"name":"Nicholas J. Provart","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04612986692244227,"gpt":0.2807855459935443,"spread":0.234655679071102,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002436174,0.001966978,0.002637848,0.005207278,0.001806447,0.002154554,0.003758465,0.0008292288,0.1098653],"category_scores_gemma":[0.00254169,0.002080971,0.001298727,0.006710621,0.0003673976,0.001453134,0.001817649,0.00221229,0.1025951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007041147,"about_ca_system_score_gemma":0.001371569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00224357,"about_ca_topic_score_gemma":0.007686211,"domain_scores_codex":[0.9983844,0.0002049575,0.0001923476,0.0004120476,0.0006009835,0.0002052956],"domain_scores_gemma":[0.9988528,0.0002874909,0.0001072147,0.0004462768,0.0001653426,0.0001408353],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001333229,0.0003079821,0.002796949,0.002441945,0.000216837,0.00072935,0.0004026976,0.001585377,0.3488369,0.005360261,0.5176849,0.1183036],"study_design_scores_gemma":[0.0004967789,0.0001297731,0.01722906,0.0001526798,0.0001901701,0.001215136,0.0001003417,0.006001319,0.1469593,0.005722358,0.8215953,0.0002077668],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.008070094,0.001289204,0.2066165,0.0002251924,0.0002630442,0.0006877416,0.670932,0.08422092,0.02769531],"genre_scores_gemma":[0.01117725,0.000788855,0.267504,0.000268421,0.0001007138,0.002229095,0.6722607,0.02779591,0.01787509],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.1098653,"threshold_uncertainty_score":0.3675361,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153775758","doi":"10.1046/j.1365-313x.2000.00845.x","title":"Early steps in cold sensing by plant cells: the role of actin cytoskeleton and membrane fluidity","year":2000,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":569,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cell biology; Cytochalasin D; Actin; Calcium; Cytoskeleton; Actin cytoskeleton; Microfilament; Calcium signaling; Chemistry; Calcium pump; Biology; Biophysics; Signal transduction; Biochemistry; Cell; ATPase","authors":[{"name":"Björn Lárus Örvar","is_ca":true},{"name":"Veena Sangwan","is_ca":true},{"name":"F Omann","is_ca":true},{"name":"Rajinder S. Dhindsa","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009542842581241546,"gpt":0.1738235308604797,"spread":0.1642806882792381,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008572359,0.0004210733,0.00025632,0.0001667502,0.0003193692,0.0004437763,0.0002140055,0.0004649255,0.0007104039],"category_scores_gemma":[0.00008877742,0.0001824955,0.0001727939,0.0001161851,0.0003946763,0.0005983197,0.0002311439,0.0004785746,0.0002217001],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005767409,"about_ca_system_score_gemma":0.000178819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009921096,"about_ca_topic_score_gemma":0.001246044,"domain_scores_codex":[0.9999429,0.00000609498,0.00000433237,0.00001707701,0.00001324078,0.00001634963],"domain_scores_gemma":[0.9999087,0.00001147034,0.00002956403,0.00001128582,0.00001502442,0.00002399643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000537732,0.000006100853,0.0002160805,0.00002404591,0.000001687058,0.00002624914,0.00001318882,0.00002771864,0.9989249,0.00008351958,0.000009055659,0.0006136331],"study_design_scores_gemma":[0.00001714784,0.000289267,0.05252804,0.00001512894,0.00001919347,0.000348472,0.00008167278,0.0008642508,0.94329,0.0004265994,0.002102946,0.00001722866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872507,0.005945646,0.0042458,0.0001994868,0.00002055234,0.00003677431,0.0002300194,0.0001208493,0.001950128],"genre_scores_gemma":[0.9954914,0.001454332,0.001414055,0.00004406887,0.00001193629,0.00002294384,0.0002793938,0.000009568712,0.001272246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009921096,"threshold_uncertainty_score":0.004184544,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3193177704","doi":"10.1111/j.1365-313x.2008.03449.x","title":"Terpenoid biomaterials","year":2008,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":520,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Genome British Columbia; Genome Canada","keywords":"Terpenoid; Context (archaeology); Biochemical engineering; Chemistry; Biology; Engineering; Botany","authors":[{"name":"Jörg Bohlmann","is_ca":true},{"name":"Christopher I. Keeling","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02241764150035325,"gpt":0.2048684942553197,"spread":0.1824508527549664,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002045863,0.0008436622,0.0004235814,0.001201141,0.0004741315,0.001197537,0.0004455631,0.0008741998,0.02034599],"category_scores_gemma":[0.0003569546,0.0003245113,0.0005127564,0.0007119862,0.000249752,0.001199368,0.0009031421,0.001465668,0.01655287],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004222757,"about_ca_system_score_gemma":0.00036205,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000172304,"about_ca_topic_score_gemma":0.000415212,"domain_scores_codex":[0.9997159,0.00002172068,0.00002140507,0.00005184167,0.0001448327,0.00004433238],"domain_scores_gemma":[0.9998611,0.00002218969,0.00002745195,0.00002011784,0.00003970388,0.00002940446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001410113,0.0001271086,0.0002950284,0.003944037,0.00006789453,0.0007940079,0.0001760473,0.001161482,0.7121628,0.01864559,0.02654425,0.2359407],"study_design_scores_gemma":[0.00002155698,0.0002229454,0.0005015263,0.0002792849,0.00004440788,0.001194118,0.00008261917,0.0006472579,0.2901749,0.003060487,0.7037235,0.00004739129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.09725089,0.4285237,0.1046968,0.003302131,0.007942463,0.000948066,0.006221213,0.004893384,0.3462214],"genre_scores_gemma":[0.4601848,0.2429907,0.06815354,0.002616069,0.001302287,0.0006305256,0.005088865,0.0008102141,0.218223],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.02034599,"threshold_uncertainty_score":0.06806409,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2772246790","doi":"10.1111/tpj.13801","title":"The <i>Physcomitrella patens</i> chromosome‐scale assembly reveals moss genome structure and evolution","year":2017,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":487,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Université Laval; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Office of Science; Directorate for Biological Sciences; Ministry of Innovation and Advanced Education; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Alberta Innovates; Universiteit Gent; U.S. Department of Energy; European Commission; Alberta Innovates - Technology Futures; Joint Genome Institute; Ministerio de Economía y Competitividad; National Science Foundation","keywords":"Physcomitrella patens; Genome; Biology; Transposable element; Gene; Genetics; Genome evolution; Plant evolution","authors":[{"name":"Daniel Lang","is_ca":false},{"name":"Kristian K Ullrich","is_ca":false},{"name":"Florent Murat","is_ca":false},{"name":"Jörg Fuchs","is_ca":false},{"name":"Jerry Jenkins","is_ca":false},{"name":"Fabian B. Haas","is_ca":false},{"name":"Mathieu Piednoël","is_ca":false},{"name":"Heidrun Gundlach","is_ca":false},{"name":"Michiel Van Bel","is_ca":false},{"name":"Rabea Meyberg","is_ca":false},{"name":"Cristina Goena Vives","is_ca":false},{"name":"Jordi Morata","is_ca":false},{"name":"Aikaterini Symeonidi","is_ca":false},{"name":"Manuel Hiß","is_ca":false},{"name":"Wellington Muchero","is_ca":false},{"name":"Yasuko Kamisugi","is_ca":false},{"name":"Omar Saleh","is_ca":false},{"name":"Guillaume Blanc","is_ca":false},{"name":"Eva L. Decker","is_ca":false},{"name":"Nico van Gessel","is_ca":false},{"name":"Jane Grimwood","is_ca":false},{"name":"Richard D. Hayes","is_ca":false},{"name":"Sean W. Graham","is_ca":true},{"name":"Lee E. Gunter","is_ca":false},{"name":"Stuart F. McDaniel","is_ca":false},{"name":"Sebastian N. W. Hoernstein","is_ca":false},{"name":"Anders Larsson","is_ca":false},{"name":"Fay‐Wei Li","is_ca":false},{"name":"Pierre‐François Perroud","is_ca":false},{"name":"Jeremy Phillips","is_ca":false},{"name":"Priya Ranjan","is_ca":false},{"name":"D. Rokshar","is_ca":false},{"name":"Carl J. Rothfels","is_ca":false},{"name":"Lucas Schneider","is_ca":false},{"name":"Shengqiang Shu","is_ca":false},{"name":"Dennis Wm. Stevenson","is_ca":false},{"name":"F. Thümmler","is_ca":false},{"name":"Michael Tillich","is_ca":false},{"name":"Juan Carlos Villarreal Aguilar","is_ca":true},{"name":"Thomas Widiez","is_ca":false},{"name":"Gane Ka‐Shu Wong","is_ca":true},{"name":"Ann M. Wymore","is_ca":false},{"name":"Yong Zhang","is_ca":false},{"name":"Andreas Zimmer","is_ca":false},{"name":"Ralph S. Quatrano","is_ca":false},{"name":"Klaus Mayer","is_ca":false},{"name":"David Goodstein","is_ca":false},{"name":"Josep Casacuberta","is_ca":false},{"name":"Klaas Vandepoele","is_ca":false},{"name":"Ralf Reski","is_ca":false},{"name":"Andrew C. Cuming","is_ca":false},{"name":"Gerald A. Tuskan","is_ca":false},{"name":"Florian Maumus","is_ca":false},{"name":"Jérôme Salse","is_ca":false},{"name":"Jeremy Schmutz","is_ca":false},{"name":"Stefan A. Rensing","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009789172038740324,"gpt":0.2214608311620956,"spread":0.2116716591233553,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001294332,0.0004199919,0.0002014568,0.0006040466,0.0002776863,0.0005766128,0.000212593,0.000250382,0.001697822],"category_scores_gemma":[0.0003936916,0.0002216925,0.0004267514,0.0006132185,0.0001159454,0.0002698283,0.0002444923,0.0004850398,0.0008921586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003981125,"about_ca_system_score_gemma":0.0004373013,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004946467,"about_ca_topic_score_gemma":0.005976782,"domain_scores_codex":[0.9999346,0.000005204139,0.000004297349,0.00003449237,0.00001180766,0.000009634068],"domain_scores_gemma":[0.9998502,0.00002646296,0.00004553551,0.00002418834,0.0000274667,0.00002624638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002345104,0.00001466652,0.006961138,0.0002941047,0.00006593477,0.0003677187,0.0001783847,0.001794289,0.9681892,0.0003239758,0.001116099,0.02045992],"study_design_scores_gemma":[0.00005641375,0.0003032366,0.4672202,0.0001749573,0.0003788334,0.001819903,0.000361269,0.01974017,0.4516204,0.001257586,0.05698389,0.00008317598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9352209,0.001864465,0.03269603,0.0002712937,0.00004860327,0.00006061397,0.02437644,0.002741838,0.002719843],"genre_scores_gemma":[0.8575447,0.001577829,0.06759033,0.0001119401,0.00002327657,0.00008537729,0.06871365,0.0006809351,0.003671892],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004946467,"threshold_uncertainty_score":0.009835362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1680516124","doi":"10.1111/j.1365-313x.2005.02583.x","title":"Abscisic acid‐activated SNRK2 protein kinases function in the gene‐regulation pathway of ABA signal transduction by phosphorylating ABA response element‐binding factors","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":479,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"Japan Society for the Promotion of Science; Ministry of Agriculture, Forestry and Fisheries; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Abscisic acid; Phosphorylation; Kinase; Signal transduction; Protein kinase A; Cell biology; Biology; Protein phosphorylation; Biochemistry; Chemistry; Gene","authors":[{"name":"Yuhko Kobayashi","is_ca":false},{"name":"Michiharu Murata","is_ca":false},{"name":"Hideyuki Minami","is_ca":false},{"name":"Shuhei Yamamoto","is_ca":false},{"name":"Yasuaki Kagaya","is_ca":false},{"name":"Tokunori Hobo","is_ca":true},{"name":"Akiko Yamamoto","is_ca":false},{"name":"Tsukaho Hattori","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02283718279976568,"gpt":0.2049440917077933,"spread":0.1821069089080276,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001029327,0.0009843098,0.0003118077,0.0001944526,0.0002144497,0.000276994,0.0002276041,0.0002484636,0.001467251],"category_scores_gemma":[0.00009089943,0.0001632901,0.0005307913,0.0001281854,0.0001674743,0.0003080187,0.0002726571,0.0002763233,0.001385888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002707039,"about_ca_system_score_gemma":0.0001658355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003690552,"about_ca_topic_score_gemma":0.0007633229,"domain_scores_codex":[0.9999083,0.0000144827,0.00001115805,0.00002540577,0.00001787676,0.00002265522],"domain_scores_gemma":[0.9999393,0.000006215561,0.00001975254,0.000008054019,0.000008510415,0.00001818116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001968786,0.00002633568,0.0007749235,0.00009648471,0.00001289662,0.0001726419,0.0000178224,0.000146273,0.9955205,0.0001601459,0.00007226413,0.002802795],"study_design_scores_gemma":[0.000039404,0.0001988069,0.01850325,0.00001045253,0.00003097844,0.001312577,0.00004391699,0.002591491,0.9724502,0.0002166954,0.004587612,0.00001459458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788519,0.006491908,0.00968008,0.000118213,0.00007285678,0.000039995,0.000694732,0.000324446,0.003725849],"genre_scores_gemma":[0.9881448,0.001732049,0.004377528,0.00004603409,0.00002032927,0.00002547649,0.001217353,0.00002761049,0.004408867],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001467251,"threshold_uncertainty_score":0.004908442,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052360880","doi":"10.1046/j.1365-313x.2003.01652.x","title":"An abscisic acid‐sensitive checkpoint in lateral root development of <i>Arabidopsis</i>","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":447,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Toronto; Universiteit Utrecht; University of Cambridge; University of California, Santa Barbara; University of Leeds; Royal Society; University of Missouri","keywords":"Auxin; Abscisic acid; Meristem; Primordium; Lateral root; Arabidopsis; Biology; Cell biology; Mutant; Gene; Biochemistry","authors":[{"name":"Ive De Smet","is_ca":false},{"name":"Laurent Signora","is_ca":false},{"name":"Tom Beeckman","is_ca":false},{"name":"Dirk Inzé","is_ca":false},{"name":"Christine H. Foyer","is_ca":false},{"name":"Hanma Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02928853992571713,"gpt":0.2436213276698679,"spread":0.2143327877441507,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000612447,0.0003090618,0.0001899708,0.0001558191,0.0001635592,0.0002129383,0.0002389644,0.0002928743,0.001913251],"category_scores_gemma":[0.00008684198,0.0002050957,0.0002784299,0.00008528304,0.000160626,0.0001799925,0.0001671949,0.0006377161,0.0008109006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004247645,"about_ca_system_score_gemma":0.0002592865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001392577,"about_ca_topic_score_gemma":0.001574592,"domain_scores_codex":[0.9999368,0.000007015296,0.000006053097,0.00002119624,0.00001647081,0.00001240252],"domain_scores_gemma":[0.9998956,0.00001305903,0.00002901626,0.00001485135,0.00001349366,0.00003404024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003665628,0.000003773073,0.00007250382,0.00001326391,0.000001120794,0.00004150826,0.000003508335,0.00001547624,0.9993352,0.00004845658,0.00001967211,0.0004088413],"study_design_scores_gemma":[0.00002220788,0.0001667378,0.02678818,0.0000107198,0.00001630244,0.0004853795,0.00002814897,0.000756264,0.9679243,0.0001184343,0.003672344,0.00001109842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891946,0.002289629,0.003454561,0.0001264315,0.0000559123,0.00002595281,0.0006437195,0.000437022,0.003772217],"genre_scores_gemma":[0.9938021,0.0004050524,0.0008911458,0.00007559422,0.00001020011,0.00002642913,0.0006702836,0.00008551915,0.00403374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001913251,"threshold_uncertainty_score":0.006400466,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141856952","doi":"10.1046/j.1365-313x.2003.01624.x","title":"Two different novel <i>cis</i>‐acting elements of <i>erd1</i>, a <i>clpA</i> homologous <i>Arabidopsis</i> gene function in induction by dehydration stress and dark‐induced senescence","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":442,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Research & Development Corporation","funders":"","keywords":"Abscisic acid; Arabidopsis; Etiolation; Biology; Gene; Reporter gene; Gene expression; Transgene; Arabidopsis thaliana; Promoter; Molecular biology; Mutant; Genetics; Biochemistry","authors":[{"name":"Séan D. Simpson","is_ca":true},{"name":"Kazuo Nakashima","is_ca":false},{"name":"Yoshihiro Narusaka","is_ca":false},{"name":"Motoaki Seki","is_ca":false},{"name":"Kazuo Shinozaki","is_ca":false},{"name":"Kazuko Yamaguchi‐Shinozaki","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02198438603921823,"gpt":0.2147030967446448,"spread":0.1927187107054266,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001272273,0.0006468774,0.0004150413,0.0003811055,0.0002031225,0.0003280243,0.0006048445,0.0004703718,0.001668824],"category_scores_gemma":[0.0002686805,0.0004405135,0.0007504695,0.0002028121,0.000356548,0.00026475,0.0003697133,0.001123266,0.0010379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005972332,"about_ca_system_score_gemma":0.0003841163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005055059,"about_ca_topic_score_gemma":0.001337562,"domain_scores_codex":[0.9997619,0.00002219074,0.0000217488,0.0001114082,0.0000451208,0.00003772325],"domain_scores_gemma":[0.99966,0.00004897752,0.0001095956,0.00004006417,0.0000475356,0.00009370984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009234902,0.000024901,0.0001992364,0.00004155888,0.000005256981,0.0001018287,0.00001828975,0.00003570117,0.9983903,0.00010008,0.00002634056,0.0009642308],"study_design_scores_gemma":[0.00006075088,0.0002199908,0.01608937,0.00002867858,0.00005221564,0.001179197,0.0000555325,0.001038203,0.9750499,0.0001369505,0.00605645,0.0000326798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9575328,0.001947371,0.03262163,0.0001944152,0.0001125764,0.0002565209,0.003591421,0.0004611229,0.003282193],"genre_scores_gemma":[0.9641829,0.0006162201,0.01776417,0.0003825552,0.00003151976,0.0002042881,0.01090747,0.0001911548,0.005719789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001668824,"threshold_uncertainty_score":0.00558275,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154701173","doi":"10.1111/j.1365-313x.2012.05093.x","title":"The genome of flax (<i>Linum usitatissimum</i>) assembled <i>de novo</i> from short shotgun sequence reads","year":2012,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":440,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia; University of Manitoba; Plant Biotechnology Institute; University of Alberta","funders":"","keywords":"Contig; Linum; Genome; Sequence assembly; Shotgun; Shotgun sequencing; Biology; Genetics; Gene; Whole genome sequencing; Reference genome; Computational biology; Proteome; Expressed sequence tag; Transcriptome; Botany","authors":[{"name":"Yidong Wang","is_ca":false},{"name":"Neil Hobson","is_ca":true},{"name":"Leonardo Galindo‐González","is_ca":true},{"name":"Shilin Zhu","is_ca":false},{"name":"Daihu Shi","is_ca":false},{"name":"Joshua McDill","is_ca":true},{"name":"Linfeng Yang","is_ca":false},{"name":"Simon Hawkins","is_ca":false},{"name":"Godfrey Neutelings","is_ca":false},{"name":"Raju Datla","is_ca":true},{"name":"Georgina M. Lambert","is_ca":false},{"name":"David W. Galbraith","is_ca":false},{"name":"Christopher J. Grassa","is_ca":true},{"name":"Armando Geraldes","is_ca":true},{"name":"Quentin Cronk","is_ca":true},{"name":"Christopher A. Cullis","is_ca":false},{"name":"Prasanta K. Dash","is_ca":false},{"name":"Polumetla Ananda Kumar","is_ca":false},{"name":"Sylvie Cloutier","is_ca":true},{"name":"Andrew Sharpe","is_ca":true},{"name":"Gane Ka‐Shu Wong","is_ca":true},{"name":"Jun Wang","is_ca":false},{"name":"Michael K. Deyholos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04206556416161341,"gpt":0.2417574998785412,"spread":0.1996919357169278,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001516797,0.0007631552,0.0004327715,0.0006013279,0.0005518944,0.0003806344,0.0002402847,0.0004757936,0.002501371],"category_scores_gemma":[0.0003506433,0.0002112058,0.0005947608,0.0008703085,0.0001553084,0.0003007207,0.0002466339,0.0005169186,0.001560931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005195658,"about_ca_system_score_gemma":0.0005906747,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004386306,"about_ca_topic_score_gemma":0.005019945,"domain_scores_codex":[0.9998686,0.00001371721,0.00001044496,0.0000652583,0.0000259213,0.0000159881],"domain_scores_gemma":[0.9999005,0.00001929161,0.00002301032,0.00000960925,0.00002824992,0.00001936311],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004914042,0.00002182117,0.001015534,0.0003315202,0.0000319535,0.0001452596,0.0000556658,0.0003289833,0.9853492,0.0001583583,0.001450377,0.01062001],"study_design_scores_gemma":[0.000223215,0.001297106,0.1794466,0.0002156512,0.0007049162,0.003126671,0.0002828983,0.008204261,0.6594489,0.001019363,0.1459113,0.000119162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7531503,0.005601404,0.04196864,0.0006327917,0.0002092629,0.000451804,0.18412,0.00336024,0.01050558],"genre_scores_gemma":[0.4032449,0.00237039,0.1035605,0.0004619384,0.00005304754,0.0004348485,0.4787075,0.0005531732,0.01061371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004386306,"threshold_uncertainty_score":0.00872153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159898141","doi":"10.1111/j.1365-313x.2007.03252.x","title":"Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion<sup>†</sup>","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Surface Properties and Treatments","field":"Agricultural and Biological Sciences","cited_by":436,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Cutin; Arabidopsis; Mutant; ATP-binding cassette transporter; Arabidopsis thaliana; Biology; Cell biology; Secretion; Biochemistry; Transporter; Gene","authors":[{"name":"David A. Bird","is_ca":true},{"name":"Fred Beisson","is_ca":false},{"name":"Alexandra Brigham","is_ca":true},{"name":"John J. H. Shin","is_ca":true},{"name":"Stephen P. Greer","is_ca":true},{"name":"Reinhard Jetter","is_ca":true},{"name":"Ljerka Kunst","is_ca":true},{"name":"Xuemin Wu","is_ca":true},{"name":"Alexander Yephremov","is_ca":false},{"name":"Lacey Samuels","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0495132471972924,"gpt":0.227661282656472,"spread":0.1781480354591796,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009230337,0.0002989974,0.000207103,0.0002377005,0.0001785561,0.0002749754,0.000166747,0.0002637611,0.001004943],"category_scores_gemma":[0.0001416368,0.0001399573,0.0002100851,0.0002039422,0.0001349385,0.0002321652,0.0001628039,0.0004352877,0.0007134767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004497729,"about_ca_system_score_gemma":0.0002371957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001607816,"about_ca_topic_score_gemma":0.001717802,"domain_scores_codex":[0.9999408,0.000004330841,0.00000752625,0.00001574396,0.0000215415,0.00001008915],"domain_scores_gemma":[0.9998548,0.00002020042,0.00002865987,0.00002219344,0.0000303771,0.00004372567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001266838,0.000007181157,0.0001545655,0.00001629965,0.000001248693,0.00007069605,0.000008581501,0.00002127818,0.9988024,0.00004544547,0.00002195145,0.0008377132],"study_design_scores_gemma":[0.00002412126,0.0001431585,0.03052209,0.000009503871,0.00003747897,0.001344563,0.0001114831,0.001548612,0.9555061,0.00009780671,0.01063963,0.00001537104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897127,0.0006088212,0.005441102,0.0002405661,0.00002609054,0.00005228008,0.002255888,0.0001125788,0.001549899],"genre_scores_gemma":[0.9726788,0.0007979004,0.00867106,0.0001542466,0.0000125982,0.00005205589,0.01122271,0.0001234857,0.006287064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001607816,"threshold_uncertainty_score":0.003361821,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1821823015","doi":"10.1046/j.1365-313x.2003.01799.x","title":"The radish <i>Rfo</i> restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":435,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Cégep Saint-Jean-sur-Richelieu; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pentatricopeptide repeat; Biology; Genetics; Arabidopsis; Gene; Cytoplasmic male sterility; Synteny; Mutant; Chromosome","authors":[{"name":"Gregory G. Brown","is_ca":true},{"name":"Nataša Formanová","is_ca":true},{"name":"Hua Jin","is_ca":true},{"name":"Richard Wargachuk","is_ca":true},{"name":"Charles Dendy","is_ca":true},{"name":"Prashant P. Patil","is_ca":true},{"name":"Martin Laforest","is_ca":true},{"name":"Jinfa Zhang","is_ca":true},{"name":"Wing‐Yee Cheung","is_ca":true},{"name":"Benoit Landry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009733371523793836,"gpt":0.2024493478296472,"spread":0.1927159763058534,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006351116,0.0005576283,0.0001960267,0.0002107309,0.0001615228,0.0001830895,0.0002599682,0.000241349,0.00113554],"category_scores_gemma":[0.00006599643,0.0001741997,0.000286952,0.0001369016,0.0002354802,0.0001313055,0.0002343379,0.000544995,0.0008394259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003056111,"about_ca_system_score_gemma":0.0001629512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004583295,"about_ca_topic_score_gemma":0.0007416543,"domain_scores_codex":[0.9999449,0.000005202496,0.000003418844,0.00001958205,0.00001528168,0.00001153636],"domain_scores_gemma":[0.9999384,0.000007409832,0.00002520757,0.000008626169,0.000004075779,0.00001636143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002452877,0.000007219903,0.0001373926,0.00002291436,0.00000238043,0.00006691365,0.000008465629,0.00001995902,0.9980904,0.0001275469,0.00002608752,0.001466207],"study_design_scores_gemma":[0.00006508452,0.0004717982,0.03031222,0.00002120594,0.00007247704,0.002510994,0.00008037441,0.0007487923,0.9422737,0.0002160911,0.02320888,0.00001842367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877949,0.001234398,0.007128021,0.000153309,0.000040607,0.00005671768,0.0007365354,0.0004018701,0.002453595],"genre_scores_gemma":[0.9703378,0.001173967,0.0113555,0.0001046631,0.00002446659,0.00004948108,0.005016593,0.0001492583,0.01178832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00113554,"threshold_uncertainty_score":0.003798723,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123762144","doi":"10.1111/j.1365-313x.2009.03850.x","title":"Transient expression in <i>Nicotiana benthamiana</i> fluorescent marker lines provides enhanced definition of protein localization, movement and interactions <i>in planta</i>","year":2009,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":429,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Bimolecular fluorescence complementation; Nicotiana benthamiana; Subcellular localization; Green fluorescent protein; Biology; Yellow fluorescent protein; Cell biology; Protein subcellular localization prediction; mCherry; Transgene; Biochemistry; Cytoplasm; Gene","authors":[{"name":"Kathleen Martin","is_ca":false},{"name":"Kristin Kopperud","is_ca":false},{"name":"Romit Chakrabarty","is_ca":true},{"name":"Rituparna Banerjee","is_ca":false},{"name":"Robert E. Brooks","is_ca":false},{"name":"Michael M. Goodin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03073995789050845,"gpt":0.2454011009314583,"spread":0.2146611430409499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002642905,0.0003426266,0.0002513416,0.0002088542,0.0002973988,0.0005294012,0.0004034375,0.0002414724,0.0009806345],"category_scores_gemma":[0.0001513725,0.000196405,0.0002515978,0.0002318117,0.0002949712,0.0002799429,0.000366323,0.0007563687,0.0007602713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000559704,"about_ca_system_score_gemma":0.0002987307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001936643,"about_ca_topic_score_gemma":0.004101877,"domain_scores_codex":[0.9998585,0.0000180841,0.00001277519,0.00003809793,0.00005184857,0.00002070181],"domain_scores_gemma":[0.9998137,0.00003178993,0.00005044985,0.00003740194,0.00002697004,0.00003973852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009373323,0.000006069305,0.00008538389,0.00001590874,0.000001516668,0.00001264889,0.00001515184,0.00001803041,0.9990675,0.0001234197,0.0000252969,0.0006196731],"study_design_scores_gemma":[0.000007336844,0.00005499229,0.002069085,0.000006307539,0.00001679201,0.0002051719,0.00003642514,0.0008414586,0.9901399,0.0001138776,0.00650262,0.000006060824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8854197,0.001395336,0.1019112,0.0004138521,0.00008555386,0.000158708,0.002619331,0.001463085,0.00653314],"genre_scores_gemma":[0.9238741,0.001377018,0.05975405,0.000127497,0.00002258836,0.0001157271,0.00547777,0.0003841222,0.008867165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001936643,"threshold_uncertainty_score":0.004060924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015964007","doi":"10.1111/j.1365-313x.2009.03892.x","title":"Arabidopsis <i>CER8</i> encodes LONG‐CHAIN ACYL‐COA SYNTHETASE 1 (LACS1) that has overlapping functions with LACS2 in plant wax and cutin synthesis","year":2009,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Surface Properties and Treatments","field":"Agricultural and Biological Sciences","cited_by":418,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"Purdue University","keywords":"Cutin; Wax; Arabidopsis; Biochemistry; Cuticle (hair); Plant cuticle; Biosynthesis; Enzyme; Monomer; Chemistry; Biology; Mutant; Gene; Organic chemistry; Genetics; Polymer","authors":[{"name":"Shiyou Lü","is_ca":false},{"name":"Tao Song","is_ca":true},{"name":"Dylan K. Kosma","is_ca":false},{"name":"Eugene P. Parsons","is_ca":false},{"name":"Owen Rowland","is_ca":true},{"name":"Matthew A. Jenks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03924195567444626,"gpt":0.1858767123157082,"spread":0.1466347566412619,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007302802,0.0009641788,0.0002815368,0.0003411116,0.0002229361,0.0002680235,0.0003358072,0.0002635284,0.001218276],"category_scores_gemma":[0.0001005153,0.0002543263,0.0003277143,0.0001949151,0.0002262917,0.0002253259,0.0003383492,0.0005460797,0.0008585271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008163693,"about_ca_system_score_gemma":0.0002594386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001412667,"about_ca_topic_score_gemma":0.002099078,"domain_scores_codex":[0.999887,0.000006395288,0.000007429468,0.00004387713,0.00003361854,0.00002177044],"domain_scores_gemma":[0.999823,0.00001404188,0.00006595034,0.00002326673,0.00002758913,0.00004620311],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001902987,0.000005057135,0.0002259705,0.00001097676,0.000001564356,0.00003733426,0.000005447569,0.00002447576,0.9987318,0.00003982341,0.00002734622,0.0008711761],"study_design_scores_gemma":[0.00001286862,0.0001023521,0.01472899,0.000004581794,0.00002123937,0.0007234954,0.00002925503,0.0009132983,0.9755158,0.00007920485,0.007854858,0.00001404495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869738,0.001030053,0.006358197,0.0001644539,0.00004272587,0.00003249173,0.001837597,0.0009568612,0.002603892],"genre_scores_gemma":[0.9791641,0.0005422724,0.006705891,0.0001083506,0.00001440897,0.00003270976,0.006992142,0.0002979907,0.006142247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001412667,"threshold_uncertainty_score":0.005923271,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2096965511","doi":"10.1111/j.1365-313x.2004.02169.x","title":"Chromatin techniques for plant cells","year":2004,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":418,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"European Commission","keywords":"Chromatin; Epigenetics; Biology; Nucleosome; Histone; ChIA-PET; Chromatin remodeling; Computational biology; Histone code; Genetics; DNA methylation; Histone-modifying enzymes; Epigenomics; Regulation of gene expression; Cell biology; Gene; Gene expression","authors":[{"name":"Chris Bowler","is_ca":false},{"name":"Giovanna Benvenuto","is_ca":false},{"name":"Pierre Laflamme","is_ca":true},{"name":"Diana Molino","is_ca":false},{"name":"Aline V. Probst","is_ca":false},{"name":"Muhammad Tariq","is_ca":false},{"name":"Jerzy Paszkowski","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03257790391793854,"gpt":0.2431992612878292,"spread":0.2106213573698907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001149708,0.0007880086,0.0006540486,0.001456157,0.000952916,0.00109419,0.001069614,0.0008398892,0.03175627],"category_scores_gemma":[0.001072513,0.0006036291,0.0005892692,0.001116031,0.0008893607,0.001079902,0.001444962,0.003867039,0.02918149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004833936,"about_ca_system_score_gemma":0.0005197399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005380707,"about_ca_topic_score_gemma":0.00158976,"domain_scores_codex":[0.9994723,0.0001027105,0.00003962083,0.0001211668,0.0002202773,0.00004387048],"domain_scores_gemma":[0.9995139,0.0001307479,0.00003775326,0.0001710442,0.0000949345,0.00005163124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002520083,0.0001776246,0.0004342912,0.001926447,0.00006637776,0.0007479102,0.0006431692,0.0004562222,0.6020019,0.05269152,0.04546475,0.2951377],"study_design_scores_gemma":[0.00004254856,0.0001258325,0.0007374979,0.0001856337,0.00003435411,0.0009833644,0.00005866244,0.0003906097,0.08993282,0.0068345,0.9006484,0.00002584084],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01274313,0.09709162,0.7229759,0.00435204,0.007774957,0.002621175,0.008514471,0.009120479,0.1348063],"genre_scores_gemma":[0.06163099,0.05414418,0.6951812,0.002722002,0.001074138,0.00469207,0.01110231,0.002427496,0.1670257],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03175627,"threshold_uncertainty_score":0.1062353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118372805","doi":"10.1111/j.1365-313x.2009.03949.x","title":"<i>RRS1</i> and <i>RPS4</i> provide a dual <i>Resistance‐</i>gene system against fungal and bacterial pathogens","year":2009,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":417,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"Japan Atomic Energy Agency; Japan Society for the Promotion of Science; Shimane University; Sumitomo Foundation","keywords":"Biology; Arabidopsis; Pseudomonas syringae; Genetics; Plant disease resistance; Mutant; Locus (genetics); Gene; Ecotype; R gene","authors":[{"name":"Mari Narusaka","is_ca":true},{"name":"Ken Shirasu","is_ca":false},{"name":"Yoshiteru Noutoshi","is_ca":false},{"name":"Yasuyuki Kubo","is_ca":false},{"name":"Tomonori Shiraishi","is_ca":false},{"name":"Masaki Iwabuchi","is_ca":false},{"name":"Yoshihiro Narusaka","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01401061009943417,"gpt":0.1849711291741086,"spread":0.1709605190746744,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001482351,0.0006496208,0.0002573051,0.0004956682,0.0001682658,0.000255993,0.0005169836,0.0002569819,0.001759962],"category_scores_gemma":[0.0001287434,0.0002744591,0.000370851,0.0002116893,0.000279882,0.0001969333,0.0004625449,0.0005566502,0.001305859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004455232,"about_ca_system_score_gemma":0.0002311256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007739375,"about_ca_topic_score_gemma":0.001697419,"domain_scores_codex":[0.9998296,0.00002596745,0.00001319107,0.0000368095,0.00005406179,0.00004018362],"domain_scores_gemma":[0.9998316,0.00001622248,0.00007163239,0.00002572152,0.00001205493,0.00004274755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003836308,0.00001202817,0.0002058721,0.00001352992,0.000003616626,0.0000163587,0.000006085061,0.00001993581,0.9985527,0.00009109065,0.00003365536,0.001006848],"study_design_scores_gemma":[0.0000455352,0.0002850881,0.01765315,0.000008455818,0.00005219039,0.0006698033,0.00002991331,0.0006907021,0.966899,0.0001309707,0.01351646,0.0000186919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.981288,0.00100924,0.01220535,0.000173753,0.00005115353,0.00008894667,0.001445581,0.0009669541,0.002771052],"genre_scores_gemma":[0.9705778,0.0005280038,0.01520615,0.0001014865,0.00001969564,0.00009171804,0.005957399,0.0001577764,0.007360063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001759962,"threshold_uncertainty_score":0.005887687,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131727652","doi":"10.1046/j.1365-313x.2003.01620.x","title":"Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in<i>Arabidopsis</i>","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Postharvest Quality and Shelf Life Management","field":"Agricultural and Biological Sciences","cited_by":417,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Performance Plants (Canada); Queen's University","funders":"National Institute of General Medical Sciences; University of Illinois at Chicago; National Aeronautics and Space Administration","keywords":"Arabidopsis; Kinase; Protein kinase domain; Biology; c-Raf; Mutation; Protein kinase A; Signal transduction; Mitogen-activated protein kinase kinase; MAP2K7; Cell biology; Genetics; Cyclin-dependent kinase 2; Gene; Mutant","authors":[{"name":"Yafan Huang","is_ca":true},{"name":"Hui Li","is_ca":false},{"name":"Claire E. Hutchison","is_ca":false},{"name":"James G. Laskey","is_ca":false},{"name":"Joseph J. Kieber","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05056668686224516,"gpt":0.2214893717489809,"spread":0.1709226848867357,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001133652,0.0005245366,0.0001676217,0.0001932677,0.0002174063,0.0002486486,0.000325928,0.0002970423,0.001361019],"category_scores_gemma":[0.0001067035,0.000156451,0.0003480217,0.0001652253,0.0001559279,0.0001987409,0.0001160318,0.0005496368,0.0007888005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008344138,"about_ca_system_score_gemma":0.0002522901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00200146,"about_ca_topic_score_gemma":0.002795982,"domain_scores_codex":[0.9999042,0.00001108567,0.000008027587,0.00002789367,0.00002931809,0.00001960384],"domain_scores_gemma":[0.9998978,0.00001525906,0.00002400693,0.00001034406,0.00002062337,0.0000319734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002371611,0.000008024115,0.00005116327,0.0000154935,0.000001752736,0.00003512794,0.000002516714,0.00002769792,0.9995298,0.00003049768,0.00003021954,0.0002439481],"study_design_scores_gemma":[0.00002156872,0.000107458,0.009858079,0.00000557097,0.00002092449,0.001084311,0.00002193277,0.001628391,0.982331,0.00005341319,0.004855555,0.00001181769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860752,0.001789374,0.003970441,0.0003535243,0.00006082139,0.00004893441,0.004178595,0.0001264461,0.003396667],"genre_scores_gemma":[0.9730448,0.0009279478,0.005716646,0.0002058629,0.00001872307,0.00005268505,0.01170793,0.000121575,0.008203882],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00200146,"threshold_uncertainty_score":0.006054163,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113656016","doi":"10.1111/j.1365-313x.2009.04048.x","title":"Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin","year":2009,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":409,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Plant Biotechnology Institute; University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Genome Prairie; RIKEN; Genome Canada","keywords":"Nucleoporin; Arabidopsis; Nuclear pore; Biology; Arabidopsis thaliana; Yeast; Karyopherin; Genetics; Saccharomyces cerevisiae; Gene; Cell biology; Computational biology; Nuclear transport; Cytoplasm; Mutant; Cell nucleus","authors":[{"name":"Qing Lu","is_ca":true},{"name":"Xurong Tang","is_ca":true},{"name":"Gang Tian","is_ca":true},{"name":"Fang Wang","is_ca":true},{"name":"Kede Liu","is_ca":true},{"name":"Vi Nguyen","is_ca":true},{"name":"Susanne E. Kohalmi","is_ca":true},{"name":"Wilfred A. Keller","is_ca":true},{"name":"Edward W. T. Tsang","is_ca":true},{"name":"John J. Harada","is_ca":false},{"name":"Steven J. Rothstein","is_ca":true},{"name":"Yuhai Cui","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01995734855481509,"gpt":0.2178763552043318,"spread":0.1979190066495167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006039975,0.0004925426,0.0001621705,0.0001628934,0.0002061544,0.0003316313,0.0002117597,0.000297142,0.002921984],"category_scores_gemma":[0.0001087853,0.0001177558,0.000206246,0.0001327555,0.0001042095,0.0002321588,0.000252603,0.0002975897,0.001310922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003276227,"about_ca_system_score_gemma":0.0002484941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000523737,"about_ca_topic_score_gemma":0.0008343852,"domain_scores_codex":[0.9999405,0.000003840917,0.000003822142,0.00002096956,0.00002104493,0.000009814262],"domain_scores_gemma":[0.9999405,0.000004434228,0.00001440835,0.000009533615,0.000009530307,0.0000215804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001078202,0.00001252533,0.0004124774,0.00005578031,0.000006603812,0.0002374878,0.00001139427,0.00006421046,0.9953936,0.0002442341,0.0001625643,0.003291181],"study_design_scores_gemma":[0.00005161858,0.0001635744,0.03294448,0.00001689991,0.00003328687,0.005802714,0.00005525089,0.001606354,0.926838,0.0003013067,0.03216998,0.00001651699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.973363,0.005368378,0.01201784,0.0002928521,0.0001008345,0.00007910893,0.002608292,0.0009617627,0.005207893],"genre_scores_gemma":[0.9713666,0.001149305,0.007421176,0.00007254745,0.00002039706,0.00002914519,0.005898916,0.00007146181,0.01397045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002921984,"threshold_uncertainty_score":0.009775043,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156920582","doi":"10.1111/j.1365-313x.2011.04541.x","title":"Chloroplast genomes of photosynthetic eukaryotes","year":2011,"lang":"en","type":"review","venue":"The Plant Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":407,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Endosymbiosis; Plastid; Gene; Chloroplast; Genetics; Nuclear gene; Gene duplication; Intron; Lineage (genetic); Evolutionary biology","authors":[{"name":"Beverley R. Green","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05175920012033848,"gpt":0.2533556751078168,"spread":0.2015964749874783,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004656254,0.001021474,0.001233113,0.001659589,0.0003466825,0.0009651373,0.000957267,0.0009348014,0.003787162],"category_scores_gemma":[0.0005610342,0.0003865889,0.0003736902,0.001816132,0.0004682901,0.001343645,0.000685199,0.001380764,0.004620272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009236505,"about_ca_system_score_gemma":0.001233303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001425084,"about_ca_topic_score_gemma":0.001391625,"domain_scores_codex":[0.9998046,0.00001824706,0.00002615671,0.00005213911,0.00007998518,0.00001904056],"domain_scores_gemma":[0.9997838,0.0000537153,0.00003877142,0.00001507221,0.00007523394,0.00003341633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000789324,0.00002722583,0.0001507222,0.01103494,0.00003405703,0.0001814475,0.00006004397,0.0002183409,0.009669704,0.003261184,0.02037048,0.9549129],"study_design_scores_gemma":[0.000007125668,0.00002720444,0.0006319699,0.0009938118,0.00003095825,0.0006389107,0.00002046924,0.00001944922,0.001248871,0.0007956587,0.9955758,0.000009812904],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003874585,0.9943785,0.0006162509,0.0002606102,0.000321707,0.00001545714,0.0001550513,0.00003709376,0.003827963],"genre_scores_gemma":[0.002119728,0.9935529,0.00106644,0.0002261858,0.0001332482,0.0000182425,0.0004012385,0.000006211647,0.002475794],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003787162,"threshold_uncertainty_score":0.01266932,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137210312","doi":"10.1046/j.1365-313x.2002.01384.x","title":"Opposite changes in membrane fluidity mimic cold and heat stress activation of distinct plant MAP kinase pathways","year":2002,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":405,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cell biology; MAPK/ERK pathway; Cytoskeleton; Extracellular; Kinase; Signal transduction; Heat shock protein; Heat shock; Mitogen-activated protein kinase; Chemistry; Biology; Biophysics; Biochemistry; Cell","authors":[{"name":"Veena Sangwan","is_ca":true},{"name":"Björn Lárus Örvar","is_ca":true},{"name":"John Beyerly","is_ca":false},{"name":"Heribert Hirt","is_ca":false},{"name":"Rajinder S. Dhindsa","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04307793192789886,"gpt":0.1940030611549158,"spread":0.1509251292270169,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005833664,0.000227302,0.0001827896,0.0001126743,0.0001218919,0.000181993,0.0001316669,0.0001800452,0.0008896154],"category_scores_gemma":[0.00007245132,0.00009643942,0.0001852197,0.00007831039,0.0001920412,0.0002235031,0.0002082191,0.0003746875,0.0001592407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002801808,"about_ca_system_score_gemma":0.00008851648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001809394,"about_ca_topic_score_gemma":0.0002962067,"domain_scores_codex":[0.9999307,0.00001010893,0.000005513003,0.00001669373,0.00001551448,0.00002147484],"domain_scores_gemma":[0.9999492,0.00000637114,0.00001914481,0.00000466027,0.000006381727,0.0000141299],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001014623,0.000004471243,0.00005853769,0.00001264299,0.000001897929,0.00001588851,0.000004985854,0.00002687739,0.9995198,0.00004816106,0.000007479066,0.000197701],"study_design_scores_gemma":[0.00001173124,0.00009548129,0.004195752,0.000002275011,0.000006230855,0.0001061412,0.00001840614,0.0005908502,0.994119,0.00007511033,0.0007737596,0.000005240904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957282,0.0007412417,0.00232319,0.00006374494,0.00002295289,0.00002017576,0.0001671121,0.00005107081,0.0008823558],"genre_scores_gemma":[0.9971676,0.0003578177,0.001404567,0.00003795925,0.000008049009,0.00003585365,0.0002667449,0.00001174423,0.0007094959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008896154,"threshold_uncertainty_score":0.00297612,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048717980","doi":"10.1111/j.1365-313x.2008.03627.x","title":"The DDF1 transcriptional activator upregulates expression of a gibberellin‐deactivating gene, <i>GA2ox7</i>, under high‐salinity stress in Arabidopsis","year":2008,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":401,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Arabidopsis; Gibberellin; Dwarfism; Biology; Promoter; Mutant; Transcription factor; Gene; Activator (genetics); Transgene; Wild type; Cell biology; Arabidopsis thaliana; Gene expression; Genetics","authors":[{"name":"Hiroshi Magome","is_ca":true},{"name":"Shinjiro Yamaguchi","is_ca":false},{"name":"Atsushi Hanada","is_ca":false},{"name":"Yuji Kamiya","is_ca":false},{"name":"Kenji Oda","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04420175649858232,"gpt":0.234292700217638,"spread":0.1900909437190557,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006880105,0.0004420752,0.000195188,0.0001840582,0.000115748,0.0001972136,0.0001524403,0.0001805489,0.0006527963],"category_scores_gemma":[0.00004880502,0.0001941495,0.0001842302,0.00008969953,0.0001471592,0.0001344181,0.0001922541,0.0003421688,0.0002692401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004170018,"about_ca_system_score_gemma":0.00015236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008879115,"about_ca_topic_score_gemma":0.001030529,"domain_scores_codex":[0.9999349,0.000007211232,0.000004577425,0.00001779766,0.00001712072,0.00001837229],"domain_scores_gemma":[0.9999316,0.000009960896,0.00001649532,0.000006204977,0.000007434541,0.00002838515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001448878,0.000003526651,0.00007504536,0.000008938375,0.000001200325,0.00001997546,0.000004760664,0.000009839529,0.9996698,0.00001583491,0.00001044909,0.0001661769],"study_design_scores_gemma":[0.0000133579,0.00007855511,0.01011785,0.000005473609,0.00001668154,0.0002023932,0.00003113023,0.001067234,0.9868217,0.00004346744,0.001595891,0.000006169922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956404,0.0006572889,0.002128711,0.00006567256,0.00002722443,0.00001323185,0.0003230443,0.0001917753,0.0009526672],"genre_scores_gemma":[0.9953596,0.0003158724,0.001181056,0.00006197792,0.000008759426,0.00001827689,0.0006722817,0.00004129088,0.002340993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008879115,"threshold_uncertainty_score":0.003025651,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161558474","doi":"10.1111/j.1365-313x.2007.03307.x","title":"Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":391,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Newcastle University; Eastern Michigan University","keywords":"Xylan; Mutant; Biochemistry; Cell wall; Xylose; Chemistry; Xylanase; Xyloglucan; Polysaccharide; Secondary cell wall; Gene; Biology; Enzyme; Fermentation","authors":[{"name":"David Brown","is_ca":false},{"name":"Florence Goubet","is_ca":false},{"name":"Vicky W.K. Wong","is_ca":true},{"name":"Royston Goodacre","is_ca":false},{"name":"Elaine Stephens","is_ca":false},{"name":"Paul Dupree","is_ca":false},{"name":"Simon R. Turner","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03895946593711884,"gpt":0.2513030949466887,"spread":0.2123436290095698,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001136731,0.0006439394,0.0003686534,0.000532749,0.0001321211,0.0002930248,0.0003115878,0.0002718284,0.0008605004],"category_scores_gemma":[0.0001443752,0.0001591424,0.0004717988,0.0002497435,0.0001679044,0.0001562861,0.0002708167,0.0004665115,0.0002151077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002323745,"about_ca_system_score_gemma":0.0001346848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004222474,"about_ca_topic_score_gemma":0.0003646546,"domain_scores_codex":[0.9998872,0.00000920919,0.00001820048,0.00003443608,0.00002860029,0.00002227342],"domain_scores_gemma":[0.9997892,0.00004610146,0.00005150622,0.00002952536,0.00001987877,0.00006383484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004534885,0.000009840852,0.0004314234,0.00001236202,0.000004443325,0.00003689319,0.000008538228,0.00004618506,0.9988474,0.00001737478,0.000002586457,0.0005376145],"study_design_scores_gemma":[0.0000132481,0.00030392,0.06171066,0.000008190318,0.00007014687,0.0009086167,0.00006748235,0.001875357,0.9336728,0.0000965739,0.001258297,0.00001461283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971955,0.0001396432,0.00189002,0.0000127604,0.000003127699,0.00001015215,0.0003245607,0.00005087311,0.000373491],"genre_scores_gemma":[0.9922485,0.0001983869,0.004266051,0.00002864046,0.000003115542,0.00002340843,0.001969799,0.00007481573,0.001187253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008605004,"threshold_uncertainty_score":0.002878726,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165953217","doi":"10.1111/j.1365-313x.2003.01998.x","title":"<i>dwarf and delayed‐flowering 1</i>, a novel <i>Arabidopsis</i> mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor","year":2004,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":364,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Arabidopsis; Gibberellin; Mutant; Biology; Transcription factor; Dwarfism; Gene; Ectopic expression; Genetics; Phenotype; Transgene; Cell biology","authors":[{"name":"Hiroshi Magome","is_ca":true},{"name":"Shinjiro Yamaguchi","is_ca":false},{"name":"Atsushi Hanada","is_ca":false},{"name":"Yuji Kamiya","is_ca":false},{"name":"Kenji Oda","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03309116323812253,"gpt":0.2336554593684405,"spread":0.200564296130318,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005607427,0.0008039457,0.0002292285,0.0003266512,0.0002413817,0.0002449228,0.0003216634,0.000276225,0.001190333],"category_scores_gemma":[0.00006818909,0.0002172451,0.0003481312,0.0001421261,0.0001942731,0.0001241925,0.0002679913,0.0006311439,0.0005594299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003236283,"about_ca_system_score_gemma":0.0001998819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001158304,"about_ca_topic_score_gemma":0.001646137,"domain_scores_codex":[0.9999214,0.000004846403,0.000007709763,0.00002906739,0.00002250431,0.00001431764],"domain_scores_gemma":[0.999859,0.0000154382,0.00004623809,0.00001244433,0.00001105664,0.00005582274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001582136,0.000005791935,0.0001170168,0.000008595108,0.00000280876,0.0001133869,0.000004516656,0.0000156425,0.999383,0.00003541746,0.00003151044,0.0002663511],"study_design_scores_gemma":[0.00004690186,0.000205149,0.03397487,0.00001090713,0.00006721855,0.005220593,0.00004378076,0.002096751,0.9485632,0.0001602223,0.009582038,0.00002839034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870282,0.0005852101,0.007132906,0.0001471939,0.00005898841,0.00003957764,0.002235266,0.000594753,0.00217782],"genre_scores_gemma":[0.9812292,0.0003513403,0.00377245,0.0001214305,0.00002572201,0.00004508755,0.005807342,0.0003265748,0.008320847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001190333,"threshold_uncertainty_score":0.003982067,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043146469","doi":"10.1046/j.0960-7412.2001.01215.x","title":"H<sub>2</sub>O<sub>2</sub> plays different roles in determining penetration failure in three diverse plant–fungal interactions","year":2002,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":357,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Amgen (Canada); University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Penetration (warfare); Extracellular; Cell wall; Fungus; Cell biology; Cytoskeleton; Plant cell; Biophysics; Cell; Chemistry; Biology; Biochemistry; Botany; Gene","authors":[{"name":"Denny G. Mellersh","is_ca":true},{"name":"Inge Viia Foulds","is_ca":true},{"name":"Verna J. Higgins","is_ca":true},{"name":"Michéle C. Heath","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03406702676604317,"gpt":0.2111895947484206,"spread":0.1771225679823774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001898003,0.0005261987,0.000337269,0.0001922884,0.0001671378,0.0003005118,0.0001879906,0.0004260003,0.000730161],"category_scores_gemma":[0.0001462687,0.0002610076,0.0002665084,0.0001517962,0.0002919891,0.0003172068,0.0002678738,0.0004808217,0.0002222582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002332606,"about_ca_system_score_gemma":0.0001041877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004108889,"about_ca_topic_score_gemma":0.0006478155,"domain_scores_codex":[0.9998272,0.00003033643,0.00001937266,0.00003514164,0.00003672277,0.00005126682],"domain_scores_gemma":[0.9997275,0.000066739,0.00008980962,0.0000248407,0.00002478911,0.00006616667],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000891681,0.000007849716,0.0004415388,0.000009282708,0.000002640473,0.00003124354,0.000006340522,0.00001711128,0.9991862,0.000006989983,0.000003512157,0.0001980824],"study_design_scores_gemma":[0.000005311921,0.0002018772,0.02926887,0.000001914346,0.00001857983,0.0002212173,0.00004582572,0.0005924139,0.9693705,0.00002590183,0.0002424128,0.000005166088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996223,0.0005581776,0.002447804,0.00003732716,0.000006403365,0.00002916884,0.0001414145,0.00003345723,0.0005233018],"genre_scores_gemma":[0.997404,0.0001963397,0.001504033,0.00003911518,0.000004496155,0.00003051588,0.0002092312,0.00001333688,0.0005988905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000730161,"threshold_uncertainty_score":0.002442598,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068766729","doi":"10.1046/j.1365-313x.2003.01938.x","title":"Overexpression of the rice <i>Osmyb4</i> gene increases chilling and freezing tolerance of <i>Arabidopsis thaliana</i> plants","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":355,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Research Council Canada; Università degli Studi dell'Insubria","keywords":"Arabidopsis thaliana; Coleoptile; Oryza sativa; Biology; Transgene; Arabidopsis; Genetically modified crops; Gene expression; Genetically modified rice; Cell biology; Ecotype; Gene; Photosystem II; Botany; Mutant; Genetics; Photosynthesis","authors":[{"name":"Candida Vannini","is_ca":false},{"name":"Franca Locatelli","is_ca":false},{"name":"Marcella Bracale","is_ca":false},{"name":"Enrico Magnani","is_ca":false},{"name":"Milena Marsoni","is_ca":false},{"name":"Michela Osnato","is_ca":false},{"name":"Monica Mattana","is_ca":false},{"name":"Elena Baldoni","is_ca":false},{"name":"Immacolata Coraggio","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01772668292317839,"gpt":0.1933400991754836,"spread":0.1756134162523052,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005433189,0.0003491063,0.0002058645,0.0001672096,0.0001135407,0.0002255757,0.000123245,0.000130092,0.001253505],"category_scores_gemma":[0.00006623033,0.0002064872,0.0002038468,0.0001238126,0.0001816161,0.0001217459,0.0002325928,0.0003763621,0.000442299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003502806,"about_ca_system_score_gemma":0.0001511941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009271721,"about_ca_topic_score_gemma":0.00117191,"domain_scores_codex":[0.9999512,0.00000599938,0.000003871622,0.00001281953,0.00001011859,0.00001595593],"domain_scores_gemma":[0.9998962,0.00001147202,0.00003353179,0.00001206691,0.00001081478,0.00003595882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002957636,0.000003581582,0.00009552931,0.000009152478,0.00000234392,0.00001322981,0.000003463353,0.00001350343,0.9996457,0.00001358691,0.00001357534,0.0001566505],"study_design_scores_gemma":[0.00002298162,0.0001186727,0.01890029,0.000008133962,0.00003044262,0.0002333555,0.00003910969,0.000862648,0.9777606,0.00005210064,0.001964167,0.000007635454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974843,0.0003321068,0.0008100639,0.00005115839,0.00001091115,0.000006271492,0.0003185824,0.0001558046,0.0008307284],"genre_scores_gemma":[0.9938491,0.0003174053,0.001282294,0.00005955078,0.000007763756,0.00001804277,0.001423535,0.0001045621,0.002937589],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001253505,"threshold_uncertainty_score":0.004193425,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139013199","doi":"10.1046/j.1365-313x.2003.01707.x","title":"The <i>ABSCISIC ACID INSENSITIVE 3</i> (<i>ABI3</i>) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in <i>Arabidopsis</i>","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":353,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Arabidopsis; Auxin; Abscisic acid; Mutant; Biology; Lateral root; Transcription factor; Promoter; Primordium; Wild type; Genetics; Gene; Cell biology; Gene expression","authors":[{"name":"Siobhán M. Brady","is_ca":true},{"name":"Sara F. Sarkar","is_ca":false},{"name":"Dario Bonetta","is_ca":false},{"name":"Peter McCourt","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02096066615235644,"gpt":0.2137773751172813,"spread":0.1928167089649248,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007822314,0.0003634433,0.0001922482,0.0002407014,0.0002183072,0.0002845445,0.0001757079,0.0002354043,0.001064027],"category_scores_gemma":[0.0001027289,0.0002009294,0.0002838006,0.0001587426,0.0002818088,0.0001596398,0.0002591837,0.0004860865,0.0006864177],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004858537,"about_ca_system_score_gemma":0.0002109504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008748427,"about_ca_topic_score_gemma":0.002009949,"domain_scores_codex":[0.9999088,0.000009487095,0.000006392153,0.00002528107,0.00003032661,0.00001965477],"domain_scores_gemma":[0.9998516,0.00001645497,0.00006144404,0.00001290367,0.00001288078,0.00004465305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002285236,0.000004823988,0.0002101428,0.000007642137,0.000001243659,0.00003750627,0.000004237405,0.00001078217,0.9993075,0.00003657708,0.00001770914,0.0003390705],"study_design_scores_gemma":[0.00002244155,0.00009383665,0.03357049,0.00000803766,0.00002719694,0.001310501,0.00003637774,0.0007247571,0.960581,0.0002114976,0.003400364,0.00001339164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943469,0.0005026313,0.002960443,0.0001099926,0.00001779439,0.00001042388,0.0006532417,0.0001912053,0.001207367],"genre_scores_gemma":[0.9912528,0.0004693203,0.00277766,0.0001123126,0.00000933426,0.0000123767,0.001814585,0.0001123998,0.003439231],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001064027,"threshold_uncertainty_score":0.00355953,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967497630","doi":"10.1046/j.1365-313x.2003.01916.x","title":"Characterisation of a pine MYB that regulates lignification","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":337,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; U.S. Department of Energy","keywords":"MYB; Promoter; Gene; Transcription factor; Yeast; Complementary DNA; Biology; Xylem; Transgene; Transcription (linguistics); Enzyme; Cell biology; Recombinant DNA; Lignin; Gene expression; Biochemistry; Botany","authors":[{"name":"Astrid Patzlaff","is_ca":false},{"name":"Stephanie McInnis","is_ca":false},{"name":"Adrian Courtenay","is_ca":false},{"name":"Christine Surman","is_ca":false},{"name":"Lisa J. Newman","is_ca":false},{"name":"Caroline Smith","is_ca":false},{"name":"Michael Bevan","is_ca":false},{"name":"Shawn D. Mansfield","is_ca":true},{"name":"Ross Whetten","is_ca":false},{"name":"Ronald R. Sederoff","is_ca":false},{"name":"Malcolm M. Campbell","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01994923742023619,"gpt":0.2262134145666009,"spread":0.2062641771463647,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007990866,0.0002311022,0.0001925324,0.0002451226,0.0001514543,0.000250302,0.0001357703,0.0002088054,0.000807716],"category_scores_gemma":[0.0001270979,0.0001664922,0.0002056024,0.0001418047,0.0001120052,0.0001301315,0.0001509211,0.0003659565,0.0005415716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001747627,"about_ca_system_score_gemma":0.0001495515,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007286942,"about_ca_topic_score_gemma":0.0009117641,"domain_scores_codex":[0.9999547,0.000003770572,0.000003058979,0.00001214597,0.00001349829,0.00001280322],"domain_scores_gemma":[0.9998974,0.00001896447,0.000026838,0.000008777257,0.00001369217,0.00003441913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001402911,0.000002273646,0.0001908189,0.00001052213,6.86197e-7,0.00002538305,0.000005760885,0.00000859395,0.9993703,0.00001838309,0.00000463538,0.0003485678],"study_design_scores_gemma":[0.00002510576,0.0003076907,0.07701448,0.00002568393,0.00003661541,0.001277616,0.0001247551,0.001168455,0.9080883,0.0001643539,0.01175351,0.00001340061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933271,0.001324067,0.003112043,0.00005598767,0.00001634852,0.00002267973,0.0007818138,0.00004872539,0.001311168],"genre_scores_gemma":[0.9830425,0.001087079,0.004987511,0.0001136241,0.00002301336,0.00003526938,0.005354545,0.00004648485,0.005310046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000807716,"threshold_uncertainty_score":0.002702057,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044923609","doi":"10.1046/j.1365-313x.2003.01800.x","title":"A method for profiling classes of plant hormones and their metabolites using liquid chromatography‐electrospray ionization tandem mass spectrometry: an analysis of hormone regulation of thermodormancy of lettuce (<i>Lactuca sativa</i> L.) seeds","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Seed Germination and Physiology","field":"Agricultural and Biological Sciences","cited_by":332,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute; Simon Fraser University","funders":"","keywords":"Abscisic acid; Chemistry; Gibberellin; Electrospray ionization; Chromatography; Germination; Zeatin; Tandem mass spectrometry; Raphanus; Lactuca; Plant hormone; High-performance liquid chromatography; Mass spectrometry; Cytokinin; Biochemistry; Botany; Auxin; Biology","authors":[{"name":"Sheila Chiwocha","is_ca":true},{"name":"Suzanne R. Abrams","is_ca":true},{"name":"Stephen J. Ambrose","is_ca":true},{"name":"Adrian J. Cutler","is_ca":true},{"name":"Mary K. Loewen","is_ca":true},{"name":"Andrew R. S. Ross","is_ca":true},{"name":"Allison R. Kermode","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02434117450048419,"gpt":0.2537539043233538,"spread":0.2294127298228696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005405804,0.001422699,0.0006669736,0.00153996,0.0006090477,0.0005732119,0.0007404767,0.001128342,0.001333381],"category_scores_gemma":[0.0005273075,0.0005174201,0.0005024952,0.0006910362,0.0004641013,0.0004896405,0.0004736786,0.001144861,0.001127477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005468164,"about_ca_system_score_gemma":0.0009543311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001447813,"about_ca_topic_score_gemma":0.002559593,"domain_scores_codex":[0.9993901,0.00006633681,0.00003588391,0.000215168,0.0002537161,0.00003876277],"domain_scores_gemma":[0.9996058,0.00009312001,0.00007964172,0.00002860621,0.0001264757,0.0000664839],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003969091,0.00002157071,0.0002089982,0.00005283697,0.00001720413,0.00002930017,0.000008530806,0.00003597544,0.9931691,0.00003630171,0.0001207765,0.006259867],"study_design_scores_gemma":[0.00007048896,0.0004109435,0.01063318,0.00003482007,0.0001034539,0.001759061,0.0000290579,0.004498426,0.9727209,0.0001950562,0.00947263,0.00007201014],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2120364,0.00980097,0.75997,0.0005349726,0.0003901399,0.001497756,0.004559724,0.007060537,0.004149497],"genre_scores_gemma":[0.2892914,0.007350925,0.6851444,0.001220267,0.0001464933,0.003095916,0.00465626,0.0004677251,0.008626635],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00153996,"threshold_uncertainty_score":0.004460633,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1924776877","doi":"10.1111/j.1365-313x.2010.04181.x","title":"Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus","year":2010,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":331,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Arabidopsis; Cell wall; Biology; Microfibril; Secondary cell wall; Cellulose; Stem cell; Arabidopsis thaliana; Cell biology; Botany; Gene; Biochemistry; Mutant","authors":[{"name":"Colleen P. MacMillan","is_ca":false},{"name":"Shawn D. Mansfield","is_ca":true},{"name":"Z. H. Stachurski","is_ca":false},{"name":"Robin J. Evans","is_ca":false},{"name":"Simon G. Southerton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01669431460507554,"gpt":0.1911291256281898,"spread":0.1744348110231143,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000590018,0.0002744879,0.0001390057,0.0003862594,0.0001239319,0.0001638262,0.00009981041,0.0001295437,0.000253921],"category_scores_gemma":[0.00007261359,0.0001328252,0.0001396342,0.0002107448,0.0001265179,0.0001776485,0.0001538109,0.0001654225,0.0001131178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000269575,"about_ca_system_score_gemma":0.0001441939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001170599,"about_ca_topic_score_gemma":0.002026054,"domain_scores_codex":[0.9999496,0.00000338546,0.00000367076,0.00002403795,0.00001125715,0.000008085918],"domain_scores_gemma":[0.9999073,0.000009911587,0.00003325605,0.000005742188,0.000009615346,0.00003418433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002429368,0.000001618691,0.0004335961,0.00001233736,0.000001735389,0.0000188779,0.00001150923,0.00002905596,0.9989375,0.00002596098,0.000004781123,0.0004985795],"study_design_scores_gemma":[0.00001809331,0.0001430213,0.367007,0.00001114252,0.00004323338,0.001607666,0.0001395838,0.002532983,0.6248771,0.0003158115,0.003274104,0.00003025846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962847,0.0006374214,0.001821468,0.00002700155,0.000003118243,0.000007819147,0.0006210147,0.00004793757,0.0005495008],"genre_scores_gemma":[0.9926569,0.0003012532,0.003426869,0.00004560935,0.000003523538,0.00001855835,0.001542883,0.00002683865,0.001977502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001170599,"threshold_uncertainty_score":0.002327502,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046944468","doi":"10.1046/j.1365-313x.2001.2641042.x","title":"<i>APETALA1</i> and <i>SEPALLATA3</i> interact to promote flower development","year":2001,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":325,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"MADS-box; Biology; Sepal; Petal; AP-1 transcription factor; Gene; Arabidopsis; Meristem; Genetics; Botany; Mutant; Gene expression","authors":[{"name":"Soraya Pelaz","is_ca":true},{"name":"Cindy Gustafson‐Brown","is_ca":true},{"name":"Susanne E. Kohalmi","is_ca":true},{"name":"William L. Crosby","is_ca":true},{"name":"Martin F. Yanofsky","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02684879336297461,"gpt":0.2342752138604201,"spread":0.2074264204974455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001402289,0.0004557914,0.0002344971,0.0002536921,0.0002368027,0.0004342919,0.0002000003,0.0002490066,0.001660163],"category_scores_gemma":[0.0001781823,0.0001778596,0.0004137158,0.0001622532,0.000228151,0.0002346603,0.0004480565,0.0004159285,0.0008781378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003535097,"about_ca_system_score_gemma":0.000143828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003904185,"about_ca_topic_score_gemma":0.0007950788,"domain_scores_codex":[0.9998811,0.00001837557,0.000006624657,0.00002476203,0.0000428183,0.00002626357],"domain_scores_gemma":[0.9997486,0.0000549551,0.00006500904,0.00002647115,0.0000203889,0.00008456998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000529795,0.000009493258,0.0004779341,0.00001898046,0.000005486255,0.00006249194,0.000005848109,0.00002595569,0.9984072,0.00007693563,0.00002690751,0.0008298029],"study_design_scores_gemma":[0.00001379377,0.0001358622,0.02173523,0.00000400688,0.00002543701,0.0007888674,0.00003756243,0.0005795002,0.9725261,0.0001568641,0.003990947,0.000005858848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880601,0.00121117,0.005951069,0.0001134699,0.00001881816,0.00002011443,0.0004718385,0.0002947926,0.003858669],"genre_scores_gemma":[0.9924998,0.0003948845,0.002973023,0.00007162163,0.000006283249,0.00001513808,0.001133634,0.00005995441,0.002845697],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001660163,"threshold_uncertainty_score":0.005553842,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1906055002","doi":"10.1111/j.1365-313x.2005.02359.x","title":"The <i>etr1‐2</i> mutation in <i>Arabidopsis thaliana</i> affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist‐chilling and germination","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":318,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute; Simon Fraser University","funders":"University of Pittsburgh","keywords":"Abscisic acid; Gibberellin; Germination; Cytokinin; Dormancy; Mutant; Wild type; Biology; Seed dormancy; Zeatin; Arabidopsis thaliana; Plant physiology; Auxin; Arabidopsis; Botany; Plant hormone; Horticulture; Biochemistry; Gene","authors":[{"name":"Sheila Chiwocha","is_ca":true},{"name":"Adrian J. Cutler","is_ca":true},{"name":"Suzanne R. Abrams","is_ca":true},{"name":"Stephen J. Ambrose","is_ca":true},{"name":"Jenny J. Yang","is_ca":true},{"name":"Andrew R. S. Ross","is_ca":true},{"name":"Allison R. Kermode","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01407825023154022,"gpt":0.2108146332629231,"spread":0.1967363830313829,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001216444,0.0008275956,0.0003132528,0.0003457732,0.0002117305,0.0003179368,0.0004966714,0.0004860619,0.001761908],"category_scores_gemma":[0.0001208162,0.0004282229,0.000500172,0.0001729907,0.0002996257,0.0001739325,0.0002798023,0.0007859936,0.0007340596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004733347,"about_ca_system_score_gemma":0.0002014666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001434966,"about_ca_topic_score_gemma":0.002368528,"domain_scores_codex":[0.9998304,0.00002405806,0.00002679769,0.00005647656,0.00003906261,0.00002314045],"domain_scores_gemma":[0.9996753,0.00003304224,0.0001401092,0.00003432305,0.00001862281,0.00009869785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004023422,0.00001187447,0.00007952804,0.000008347238,0.000003956037,0.00005639603,0.000004515188,0.00001878569,0.9996108,0.00001944771,0.00001238865,0.0001337726],"study_design_scores_gemma":[0.00005946215,0.000247226,0.02426921,0.00001405497,0.00005261437,0.00134539,0.00004606703,0.001562198,0.9695584,0.00005488667,0.002758805,0.00003170804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945674,0.0002008249,0.002628669,0.00009024411,0.00003232116,0.00004205932,0.001395984,0.0003142529,0.000728225],"genre_scores_gemma":[0.9890401,0.0001783919,0.003921377,0.000139506,0.00001320886,0.00005940839,0.002178954,0.0003027369,0.004166337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001761908,"threshold_uncertainty_score":0.005894184,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145445055","doi":"10.1111/j.1365-313x.2007.03050.x","title":"A mutation in <i>NLA</i>, which encodes a RING‐type ubiquitin ligase, disrupts the adaptability of <i>Arabidopsis</i> to nitrogen limitation","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant nutrient uptake and metabolism","field":"Agricultural and Biological Sciences","cited_by":317,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Arabidopsis; Mutant; Biology; Ubiquitin ligase; Cell biology; Wild type; Ubiquitin; Arabidopsis thaliana; Genetics; Gene","authors":[{"name":"Mingsheng Peng","is_ca":true},{"name":"Carol Hannam","is_ca":true},{"name":"Honglan Gu","is_ca":true},{"name":"Yong‐Mei Bi","is_ca":true},{"name":"Steven J. Rothstein","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03331320502760763,"gpt":0.2408612469204481,"spread":0.2075480418928405,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001514742,0.001092704,0.0003319042,0.0006006406,0.0003668696,0.0003228542,0.0007525671,0.0006789827,0.002013641],"category_scores_gemma":[0.0001861817,0.0003903016,0.0006451676,0.0002639229,0.0006254134,0.0001910755,0.0005400772,0.0007907938,0.001088615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006979243,"about_ca_system_score_gemma":0.0003608775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001714006,"about_ca_topic_score_gemma":0.001911317,"domain_scores_codex":[0.9998245,0.00002318438,0.00002690531,0.00005194074,0.00004744875,0.00002602671],"domain_scores_gemma":[0.9995288,0.0000916404,0.000199068,0.0000400951,0.00002247729,0.0001178943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005844592,0.00003103154,0.000146191,0.00002683209,0.00001472382,0.000238827,0.00001099096,0.00009067713,0.9984756,0.0001481225,0.00008377511,0.0006747852],"study_design_scores_gemma":[0.0001021881,0.0004302742,0.01700598,0.00003687309,0.0001034537,0.002964432,0.00006425846,0.00478621,0.9645788,0.000227826,0.009644176,0.00005544362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841337,0.0006712145,0.008494387,0.0001790927,0.0001534182,0.0001321481,0.00190518,0.001024602,0.003306297],"genre_scores_gemma":[0.9851888,0.0005445958,0.005527238,0.0001911708,0.00005592543,0.00009637555,0.002163354,0.0003409492,0.005891572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002013641,"threshold_uncertainty_score":0.006736338,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1905441747","doi":"10.1111/j.1365-313x.2009.03996.x","title":"Mutations in the <i>cinnamate 4‐hydroxylase</i> gene impact metabolism, growth and development in Arabidopsis","year":2009,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":316,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"National Science Foundation","keywords":"Phenylpropanoid; Mutant; Arabidopsis; Biochemistry; Biology; Gene; Secondary metabolism; Enzyme; Genetics; Biosynthesis","authors":[{"name":"Anthony L. Schilmiller","is_ca":true},{"name":"Jake Stout","is_ca":true},{"name":"Jing‐Ke Weng","is_ca":false},{"name":"John M. Humphreys","is_ca":true},{"name":"Max O. Ruegger","is_ca":true},{"name":"Clint Chapple","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01150287898505706,"gpt":0.2476553932478881,"spread":0.236152514262831,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009922906,0.001080813,0.0002349502,0.0004916506,0.0002456609,0.000284422,0.0003015496,0.0004324282,0.001909179],"category_scores_gemma":[0.0001160656,0.0003176196,0.0003253276,0.0002423084,0.0003203077,0.0001696036,0.0003127312,0.0005824474,0.0008007128],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005545338,"about_ca_system_score_gemma":0.0002590822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002325306,"about_ca_topic_score_gemma":0.002765054,"domain_scores_codex":[0.9998409,0.00001755283,0.00001749267,0.00004422428,0.0000508491,0.0000289477],"domain_scores_gemma":[0.9997696,0.00004177814,0.00007803547,0.00002437125,0.00001313803,0.0000730285],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003662409,0.0000128602,0.0001573143,0.00001284816,0.000005101423,0.000121784,0.000009445548,0.00005592123,0.9988548,0.00004728566,0.00003442845,0.000651513],"study_design_scores_gemma":[0.00007038025,0.0002382244,0.04120722,0.00002035733,0.000110723,0.002478986,0.00008001074,0.002243777,0.9456729,0.000174802,0.007662787,0.00003993342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991546,0.0006244575,0.002970524,0.00008981915,0.0000316125,0.00004474454,0.001360045,0.0006431596,0.002689645],"genre_scores_gemma":[0.988023,0.0006287828,0.002914691,0.00009027867,0.0000154447,0.00003115888,0.001791259,0.0002952872,0.006210051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002325306,"threshold_uncertainty_score":0.006386817,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1572357774","doi":"10.1111/j.1365-313x.2011.04619.x","title":"Next‐generation mapping of Arabidopsis genes","year":2011,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":312,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Tech University; University of Toronto","funders":"","keywords":"Computational biology; Biology; Genetics; Genome; Population; Arabidopsis; DNA sequencing; Gene; Reference genome; Mutant","authors":[{"name":"Ryan S. Austin","is_ca":true},{"name":"Danielle P. Vidaurre","is_ca":true},{"name":"George Stamatiou","is_ca":true},{"name":"Robert Breit","is_ca":true},{"name":"Nicholas J. Provart","is_ca":true},{"name":"Dario Bonetta","is_ca":true},{"name":"Jianfeng Zhang","is_ca":true},{"name":"Pauline Fung","is_ca":true},{"name":"Yunchen Gong","is_ca":true},{"name":"Pauline W. Wang","is_ca":true},{"name":"Peter McCourt","is_ca":true},{"name":"David S. Guttman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0869088258073299,"gpt":0.2256076608328207,"spread":0.1386988350254909,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004960064,0.0003513597,0.0004162768,0.0006464447,0.0003741942,0.0004267311,0.000533991,0.0004534069,0.002011969],"category_scores_gemma":[0.0005893259,0.0002408611,0.0005845229,0.0004941836,0.0001655397,0.0002529708,0.0003180487,0.0007886558,0.00119505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004757738,"about_ca_system_score_gemma":0.0004321155,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001643524,"about_ca_topic_score_gemma":0.003639395,"domain_scores_codex":[0.9997512,0.00003267599,0.00001332452,0.00008279552,0.0000926533,0.00002745278],"domain_scores_gemma":[0.9997396,0.00008723175,0.00003718351,0.00006100465,0.00004498857,0.00003004053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008896209,0.00002743726,0.0008402949,0.0001090327,0.00003472326,0.0001027864,0.00004741339,0.0009478944,0.9580218,0.001156527,0.001196809,0.03742647],"study_design_scores_gemma":[0.000100257,0.0002098819,0.03854713,0.00005316351,0.0001466745,0.000789748,0.00008014545,0.02295202,0.8257135,0.0042412,0.1070777,0.00008844699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.287191,0.003714507,0.6752999,0.000723897,0.0004288817,0.0004747453,0.01486364,0.004828222,0.01247521],"genre_scores_gemma":[0.2995617,0.00219374,0.667455,0.0006893134,0.00007783189,0.0006733821,0.01856671,0.0006689611,0.01011338],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002011969,"threshold_uncertainty_score":0.006730676,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063954820","doi":"10.1046/j.1365-313x.2000.00899.x","title":"Expression of the plant cyclin‐dependent kinase inhibitor ICK1 affects cell division, plant growth and morphology","year":2000,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":305,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; Saskatoon Medical Imaging","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cyclin-dependent kinase; Biology; Cauliflower mosaic virus; Cell division; Cell biology; Cell growth; CDK inhibitor; Plant cell; Arabidopsis thaliana; Botany; Genetically modified crops; Transgene; Cell cycle; Cell; Biochemistry; Mutant; Gene","authors":[{"name":"Hong Wang","is_ca":true},{"name":"Yongming Zhou","is_ca":true},{"name":"Steve Whitwill","is_ca":true},{"name":"Larry C. Fowke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01602935843976952,"gpt":0.211673249567725,"spread":0.1956438911279555,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006456529,0.0003148201,0.0002369602,0.0002732304,0.0001943634,0.0003450795,0.0002549607,0.0002907194,0.0006926407],"category_scores_gemma":[0.00009101782,0.0002058209,0.0001792285,0.0001871867,0.000210019,0.0001901247,0.0001593354,0.0006016452,0.0002511216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001021895,"about_ca_system_score_gemma":0.0002641822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002514497,"about_ca_topic_score_gemma":0.002785712,"domain_scores_codex":[0.9999022,0.00000667752,0.000007986841,0.0000309398,0.00002353026,0.00002861755],"domain_scores_gemma":[0.9998795,0.00002445323,0.00003124146,0.00001291752,0.000008230584,0.000043725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003878592,0.000009093957,0.0001059362,0.00001215791,0.000001207978,0.00001711205,0.000008275729,0.00004237636,0.9993148,0.000038563,0.00001765593,0.0003940711],"study_design_scores_gemma":[0.000009678833,0.0000814079,0.009683888,0.000003810891,0.00001155142,0.0001121531,0.00002577133,0.001321602,0.9867639,0.00003372701,0.001946344,0.000006224969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947136,0.001758272,0.0008442334,0.00007370191,0.0000177544,0.00001190765,0.0004664645,0.00009256145,0.002021515],"genre_scores_gemma":[0.9949142,0.0006951003,0.0008346837,0.00003537839,0.000005793193,0.0000163824,0.0006516047,0.00003734402,0.002809426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002514497,"threshold_uncertainty_score":0.007414401,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2970493850","doi":"10.1111/tpj.14516","title":"Cannabis glandular trichomes alter morphology and metabolite content during flower maturation","year":2019,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":301,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Fibics (Canada); Canada's Michael Smith Genome Sciences Centre; Critical Systems Labs; University of British Columbia","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Trichome; Biology; Terpene; Botany; Monoterpene; Secondary metabolite; Cannabinoid; Transcriptome; Biochemistry; Gene; Gene expression","authors":[{"name":"Samuel J. Livingston","is_ca":true},{"name":"Teagen D. Quilichini","is_ca":true},{"name":"Judith K. Booth","is_ca":true},{"name":"Darren C. J. Wong","is_ca":true},{"name":"Kim H. Rensing","is_ca":true},{"name":"Jessica Laflamme‐Yonkman","is_ca":true},{"name":"Simone D. Castellarin","is_ca":true},{"name":"Jöerg Bohlmann","is_ca":true},{"name":"Jonathan E. Page","is_ca":true},{"name":"Lacey Samuels","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01609467168507576,"gpt":0.1895628688154759,"spread":0.1734681971304002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000672118,0.0001722073,0.0002020695,0.0004511854,0.0002624632,0.0003695134,0.00017759,0.0002457275,0.001456746],"category_scores_gemma":[0.0001519284,0.0002021541,0.0003418846,0.0002197492,0.0001825404,0.0002117299,0.0002616607,0.0004252825,0.0004163141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004054976,"about_ca_system_score_gemma":0.0002150252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004399977,"about_ca_topic_score_gemma":0.005537081,"domain_scores_codex":[0.9999158,0.00000593431,0.000003843138,0.00002102383,0.0000245389,0.00002880411],"domain_scores_gemma":[0.9998385,0.00002520178,0.00003297937,0.00001686857,0.00003655469,0.00004984536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008114745,0.000005109433,0.001294874,0.00001023418,0.000003141514,0.00007633065,0.00006509321,0.000007478631,0.9976266,0.00002568423,0.00001608973,0.0007883033],"study_design_scores_gemma":[0.000008347646,0.0001556293,0.5405689,0.00001270555,0.00002968155,0.0007739929,0.0004035149,0.0005832867,0.4548623,0.000105553,0.002475717,0.0000204712],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953722,0.0006179961,0.0009635059,0.00003769289,0.000006921155,0.00002144991,0.0006661252,0.00005423421,0.002259875],"genre_scores_gemma":[0.9930004,0.0003411497,0.000857908,0.00005521157,0.000004029098,0.00003362884,0.00102225,0.00003318156,0.004652192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004399977,"threshold_uncertainty_score":0.00874877,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167245757","doi":"10.1111/tpj.12670","title":"Arabidopsis <scp>RAV</scp>1 transcription factor, phosphorylated by <scp>S</scp>n<scp>RK</scp>2 kinases, regulates the expression of <i><scp>ABI</scp>3</i>,<i><scp>ABI</scp>4</i>, and <i><scp>ABI</scp>5</i> during seed germination and early seedling development","year":2014,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":298,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Natural Science Foundation of China; Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Chinese Academy of Sciences; China Agricultural University; National Science Foundation","keywords":"Abscisic acid; Arabidopsis; Transcription factor; Kinase; Phosphorylation; Phenotype; Biology; Cell biology; Chemistry; Mutant; Molecular biology; Genetics; Gene","authors":[{"name":"Cuizhu Feng","is_ca":false},{"name":"Yun Chen","is_ca":false},{"name":"Cun Wang","is_ca":false},{"name":"You‐Han Kong","is_ca":false},{"name":"Weihua Wu","is_ca":false},{"name":"Yifang Chen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01174224095973752,"gpt":0.1869990616674213,"spread":0.1752568207076837,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006395533,0.0004612028,0.0001939672,0.0002247586,0.0002588466,0.0002815626,0.0002164827,0.0001724194,0.001502607],"category_scores_gemma":[0.00007452338,0.0002424836,0.0003506095,0.0001221639,0.0001653969,0.000261628,0.0002129712,0.000415681,0.000896703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004939427,"about_ca_system_score_gemma":0.0002283695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001396056,"about_ca_topic_score_gemma":0.002255042,"domain_scores_codex":[0.9999175,0.000006893641,0.000004099086,0.00003358288,0.00001907504,0.00001885387],"domain_scores_gemma":[0.9999285,0.000006967146,0.00002551587,0.000009054813,0.00001146329,0.00001854523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002532214,0.000003283515,0.0001792188,0.00001637094,0.000001782302,0.00003007532,0.000007149888,0.00003606241,0.9987358,0.00006195054,0.00003654653,0.0008664089],"study_design_scores_gemma":[0.00001581694,0.0001008222,0.02539849,0.000007103727,0.00002436522,0.0006254948,0.0000493476,0.002954648,0.9643273,0.0001784935,0.006300878,0.00001711405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9818853,0.002518509,0.009610617,0.00009537999,0.00003482477,0.00002784189,0.0007749544,0.0008940161,0.004158497],"genre_scores_gemma":[0.9910433,0.0004856857,0.002736816,0.00004411791,0.000009416377,0.00001686888,0.001152796,0.00008184341,0.004429155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001502607,"threshold_uncertainty_score":0.005026698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111366671","doi":"10.1111/j.1365-313x.2005.02403.x","title":"Global transcript profiling of primary stems from <i>Arabidopsis thaliana</i> identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation","year":2005,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":297,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Monolignol; Biology; Arabidopsis; Candidate gene; Gene expression profiling; Gene; Genetics; Transcriptome; Microarray analysis techniques; Arabidopsis thaliana; Genome; Computational biology; Gene expression; Biosynthesis","authors":[{"name":"Jürgen Ehlting","is_ca":true},{"name":"Nathalie Mattheus","is_ca":false},{"name":"Dana Aeschliman","is_ca":false},{"name":"Eryang Li","is_ca":false},{"name":"Britta Hamberger","is_ca":false},{"name":"Ian F. Cullis","is_ca":false},{"name":"Jun Zhuang","is_ca":false},{"name":"Minako Kaneda","is_ca":false},{"name":"Shawn D. Mansfield","is_ca":false},{"name":"Lacey Samuels","is_ca":false},{"name":"Kermit Ritland","is_ca":false},{"name":"Brian E. Ellis","is_ca":true},{"name":"Jörg Bohlmann","is_ca":true},{"name":"Carl J. Douglas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01442563905088111,"gpt":0.227846469894014,"spread":0.2134208308431329,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008466131,0.0003482155,0.0002320295,0.0003140198,0.0001766021,0.0002261431,0.0001087899,0.0001512229,0.0007913581],"category_scores_gemma":[0.00008005701,0.0001183394,0.0003254383,0.0003060295,0.0001615165,0.000139182,0.0001150789,0.0003097464,0.0003152189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003055432,"about_ca_system_score_gemma":0.0001870584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001332271,"about_ca_topic_score_gemma":0.003124697,"domain_scores_codex":[0.9999382,0.000004114221,0.000003174292,0.00002496027,0.00001312712,0.00001631146],"domain_scores_gemma":[0.9999202,0.0000159885,0.000018351,0.000006917797,0.00001519204,0.00002332193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003792012,0.000003222616,0.0004216856,0.00001210632,0.000002166955,0.00001308134,0.000007077451,0.0000130244,0.9990927,0.000008579019,0.00002074782,0.0003677828],"study_design_scores_gemma":[0.00002466741,0.0003884087,0.2334054,0.00000931764,0.00007519223,0.0004567022,0.0001157898,0.001203336,0.7616948,0.0001023687,0.00250484,0.00001913089],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901533,0.0006031278,0.002729954,0.0000672533,0.00001348333,0.00003316281,0.005337218,0.000129375,0.0009331784],"genre_scores_gemma":[0.9703649,0.000608598,0.006760291,0.0001961675,0.00001921658,0.00009990395,0.01823063,0.00008555096,0.003634737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001332271,"threshold_uncertainty_score":0.002649069,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125317555","doi":"10.1111/tpj.12014","title":"<scp><i>SIZ1</i></scp>deficiency causes reduced stomatal aperture and enhanced drought tolerance via controlling salicylic acid‐induced accumulation of reactive oxygen species in<scp>A</scp>rabidopsis","year":2012,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":296,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Japan Society for the Promotion of Science; University of Tsukuba; Ministry of Education, Culture, Sports, Science and Technology; University of Toronto; U.S. Department of Agriculture","keywords":"Reactive oxygen species; Salicylic acid; Drought tolerance; Transpiration; NADPH oxidase; Stomatal conductance; Chemistry; Biology; Cell biology; Botany; Biochemistry; Photosynthesis","authors":[{"name":"Kenji Miura","is_ca":false},{"name":"Hiroyuki Okamoto","is_ca":false},{"name":"Eiji Okuma","is_ca":false},{"name":"Hayato Shiba","is_ca":false},{"name":"Hiroshi Kamada","is_ca":false},{"name":"Paul M. Hasegawa","is_ca":false},{"name":"Yoshiyuki Murata","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04602433543004478,"gpt":0.2544924587568775,"spread":0.2084681233268327,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008093692,0.0006653608,0.000282919,0.0003248939,0.0001974883,0.0002372056,0.000316007,0.0003255339,0.001871351],"category_scores_gemma":[0.00007492814,0.0002478,0.0003136721,0.0002531957,0.0002302071,0.0001739587,0.0001995352,0.0007528856,0.0006405837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004880064,"about_ca_system_score_gemma":0.0002003832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001321977,"about_ca_topic_score_gemma":0.001533083,"domain_scores_codex":[0.9999028,0.00001168507,0.00001280201,0.00002612166,0.00002908967,0.00001749896],"domain_scores_gemma":[0.9998314,0.0000223984,0.00006152243,0.00002331368,0.00001591092,0.00004550184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001993793,0.000005149165,0.00004722831,0.00001335839,0.000002431579,0.00002119356,0.000003694705,0.00002278586,0.9996166,0.00003279037,0.00001876342,0.000196038],"study_design_scores_gemma":[0.00002700843,0.0001250659,0.01190602,0.000006323823,0.00002949337,0.000364526,0.00003532312,0.002533824,0.9804638,0.00009155037,0.004403293,0.00001383853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919714,0.0004334265,0.003842918,0.0001284083,0.00002641884,0.00002626931,0.001853675,0.0004596405,0.001257934],"genre_scores_gemma":[0.9895777,0.0003113952,0.002407227,0.00006437615,0.000009363106,0.00004218908,0.003953085,0.0002092156,0.003425542],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001871351,"threshold_uncertainty_score":0.006260276,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147499704","doi":"10.1046/j.1365-313x.2003.01846.x","title":"Expression of a stress‐induced hemoglobin affects NO levels produced by alfalfa root cultures under hypoxic stress","year":2003,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant responses to water stress","field":"Agricultural and Biological Sciences","cited_by":295,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Hemoglobin; Oxygen; Hypoxia (environmental); Nitric oxide; Cell culture; Biology; Biochemistry; Chemistry; Molecular biology; Endocrinology; Genetics","authors":[{"name":"Christos Dordas","is_ca":true},{"name":"Brian B. Hasinoff","is_ca":true},{"name":"Abir U. Igamberdiev","is_ca":true},{"name":"Nathalie Manac'h","is_ca":true},{"name":"Jean Rivoal","is_ca":true},{"name":"Robert D. Hill","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02784511427346491,"gpt":0.2274602566046413,"spread":0.1996151423311763,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008166584,0.0002177044,0.0002149392,0.00008741627,0.000130503,0.0001709613,0.0001591286,0.0001488815,0.0004427966],"category_scores_gemma":[0.00009414293,0.0001460115,0.0001071307,0.00008986356,0.0001451969,0.00009640577,0.0001450805,0.0002916563,0.0001313633],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003556029,"about_ca_system_score_gemma":0.0001693037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003122612,"about_ca_topic_score_gemma":0.003983091,"domain_scores_codex":[0.9999294,0.000009881528,0.000005358525,0.00001699587,0.00001883607,0.00001948307],"domain_scores_gemma":[0.9998775,0.00001983123,0.00003078451,0.00001520413,0.00002344843,0.00003330066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000202928,0.00000210809,0.00005415383,0.000004039334,6.776398e-7,0.000009958651,0.000007430918,0.000007855232,0.9997817,0.000006017751,0.000003351997,0.0001024387],"study_design_scores_gemma":[0.000009702598,0.0001535901,0.01147339,0.00000442873,0.0000161439,0.0001039255,0.00007487237,0.0006996332,0.9865329,0.00003314789,0.0008931807,0.000005039944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986168,0.0001530775,0.0006670278,0.00002519227,0.000005353553,0.000003988505,0.000107989,0.0000213513,0.0003992231],"genre_scores_gemma":[0.9959874,0.0002004257,0.001204515,0.00003254255,0.000004214502,0.00001268824,0.0004907608,0.00002639571,0.002041201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003122612,"threshold_uncertainty_score":0.006208837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999044492","doi":"10.1046/j.1365-313x.2000.00799.x","title":"Short root mutant of <i>Lotus japonicus</i> with a dramatically altered symbiotic phenotype","year":2000,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":291,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Emergent BioSolutions (Canada)","funders":"College of Engineering, Michigan State University; York University; Michigan State University; U.S. Department of Energy; National Science Foundation","keywords":"Lotus japonicus; Mutant; Biology; Root nodule; Symbiosis; Root hair; Lateral root; Meristem; Cytokinin; Auxin; Organogenesis; Elongation; Wild type; Cell biology; Shoot; Botany; Arabidopsis; Genetics; Gene; Bacteria","authors":[{"name":"Judith Wopereis","is_ca":true},{"name":"Eloísa Pajuelo","is_ca":true},{"name":"Frank B. Dazzo","is_ca":false},{"name":"Qunyi Jiang","is_ca":false},{"name":"Peter M. Gresshoff","is_ca":false},{"name":"Frans J. de Bruijn","is_ca":false},{"name":"Jens Stougaard","is_ca":false},{"name":"Krzysztof Szczygłowski","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01309753565247573,"gpt":0.1890364444498181,"spread":0.1759389087973423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006761849,0.0004347281,0.000150202,0.0002208139,0.0001162335,0.0001349942,0.000216141,0.0001915962,0.00114455],"category_scores_gemma":[0.00005991598,0.0001751163,0.0002061827,0.0001073487,0.0001611413,0.00008801716,0.0002369082,0.0003596202,0.0004735125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002251859,"about_ca_system_score_gemma":0.0001462616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008505551,"about_ca_topic_score_gemma":0.001515636,"domain_scores_codex":[0.9999324,0.000009271558,0.000007649257,0.00001621839,0.00001928958,0.00001512854],"domain_scores_gemma":[0.9998271,0.00001912163,0.00007306836,0.00001564331,0.00001096454,0.00005412335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002157929,0.000006013533,0.0001371549,0.000006716897,0.000001872621,0.00004078068,0.000004433543,0.0000109907,0.9995802,0.00002344255,0.000007054025,0.0001598432],"study_design_scores_gemma":[0.00006077095,0.0005068191,0.06064068,0.0000118895,0.00004440936,0.002217726,0.00006879621,0.001680539,0.9304987,0.00009682364,0.004152046,0.00002077982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997558,0.0001562864,0.001143544,0.00002735898,0.000008151217,0.0000110507,0.0003340239,0.00009715107,0.0006643593],"genre_scores_gemma":[0.9912977,0.0001318127,0.002465865,0.0000561411,0.00000633832,0.0000367885,0.00129766,0.00007692526,0.004630673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00114455,"threshold_uncertainty_score":0.003828943,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111972336","doi":"10.1046/j.1365-313x.2002.01439.x","title":"Expression of a <i>Phytophthora sojae</i> necrosis‐inducing protein occurs during transition from biotrophy to necrotrophy","year":2002,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":285,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"","keywords":"Phytophthora sojae; Biology; Oomycete; Nicotiana benthamiana; Phytophthora; Agrobacterium; Gene expression; Expressed sequence tag; Streptomyces coelicolor; Microbiology; Molecular biology; Gene; Genetics; Botany; Pathogen; Transformation (genetics)","authors":[{"name":"Dinah Qutob","is_ca":true},{"name":"Sophien Kamoun","is_ca":false},{"name":"Mark Gijzen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02190362733846557,"gpt":0.1833302844327762,"spread":0.1614266570943106,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008781438,0.0002325451,0.0001510087,0.0001449576,0.0001271932,0.0002775285,0.0001004269,0.0001667814,0.0003325678],"category_scores_gemma":[0.0001216409,0.0001427593,0.0002666581,0.0001235546,0.0001699131,0.0001779518,0.0001483011,0.0003459505,0.0002674142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002829609,"about_ca_system_score_gemma":0.0001234222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003908514,"about_ca_topic_score_gemma":0.0005225281,"domain_scores_codex":[0.9999084,0.00001043998,0.000008155103,0.00002803685,0.00002093057,0.00002395668],"domain_scores_gemma":[0.9998349,0.00002437266,0.00006905162,0.0000159863,0.00001544943,0.00004022636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002197714,0.000004820325,0.0002274144,0.000006797819,8.362741e-7,0.00001805738,0.000006817309,0.000009395164,0.9995739,0.00001263289,0.000003522854,0.0001139135],"study_design_scores_gemma":[0.00001071767,0.0002162172,0.04629494,0.000008633539,0.0000165718,0.0005996955,0.00006098068,0.0009975784,0.9502227,0.00005574054,0.001510125,0.000006024383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977221,0.0002859488,0.001204271,0.00002983402,0.000005926386,0.00001113835,0.0002703666,0.00003945082,0.0004309918],"genre_scores_gemma":[0.9957715,0.0003223027,0.001676184,0.00002765795,0.000005661256,0.00001426934,0.001118376,0.0000177558,0.001046302],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0003908514,"threshold_uncertainty_score":0.002053022,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126302335","doi":"10.1111/j.1365-313x.2006.02903.x","title":"Negative regulation of defense responses in Arabidopsis by two <i>NPR1</i> paralogs","year":2006,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":283,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Arabidopsis; Ectopic expression; Mutant; NPR1; Oomycete; Biology; Complementation; Salicylic acid; Systemic acquired resistance; Cell biology; Gene; Microbiology; Genetics; Medicine","authors":[{"name":"Yuelin Zhang","is_ca":true},{"name":"Yu Cheng","is_ca":true},{"name":"Na Qu","is_ca":false},{"name":"Qingguo Zhao","is_ca":false},{"name":"Dong-Lin Bi","is_ca":false},{"name":"Xin Li","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0208478917941438,"gpt":0.2255315209544684,"spread":0.2046836291603245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001045156,0.0004305134,0.0001501738,0.0001664246,0.0001453041,0.000276766,0.0002151522,0.0001759835,0.0007917111],"category_scores_gemma":[0.0001233381,0.0001609207,0.0001931209,0.00006876727,0.000169136,0.0001806381,0.0001410319,0.0003022625,0.0005779744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003918154,"about_ca_system_score_gemma":0.0001338636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005590752,"about_ca_topic_score_gemma":0.0008580135,"domain_scores_codex":[0.9998875,0.00001465239,0.000006827954,0.00002950293,0.00004446588,0.00001708388],"domain_scores_gemma":[0.9998978,0.00001460012,0.00004034557,0.00001543593,0.00001049309,0.0000213143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002239662,0.000002983144,0.000141555,0.000009196183,0.000001197576,0.00003398079,0.000003894495,0.00001471217,0.9991855,0.00003548423,0.00001308489,0.0005360113],"study_design_scores_gemma":[0.00002252088,0.0001042439,0.03031298,0.000005574319,0.00002543732,0.001078052,0.00003322589,0.001414658,0.964403,0.0002405467,0.002351372,0.00000838554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939995,0.0009158098,0.003381687,0.0001038916,0.00001181838,0.000007898576,0.0002432516,0.0001979777,0.001138158],"genre_scores_gemma":[0.9948785,0.000419557,0.002199399,0.00004149699,0.00000581679,0.00001063361,0.0006106871,0.00005253932,0.001781346],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007917111,"threshold_uncertainty_score":0.002842784,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165395438","doi":"10.1111/j.1365-313x.2006.03023.x","title":"Alanine aminotransferase catalyses the breakdown of alanine after hypoxia in <i>Arabidopsis thaliana</i>","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant responses to water stress","field":"Agricultural and Biological Sciences","cited_by":274,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Arabidopsis; Alanine; Biochemistry; Mutant; Biology; Arabidopsis thaliana; Wild type; Enzyme; Metabolism; Amino acid; Gene","authors":[{"name":"Yo Miyashita","is_ca":true},{"name":"Rudy Dolferus","is_ca":false},{"name":"Kathleen P. Ismond","is_ca":true},{"name":"Allen G. Good","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01855981478616027,"gpt":0.2131490164948233,"spread":0.194589201708663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009352357,0.0006699044,0.0003371151,0.0002113583,0.0002192568,0.0002896009,0.0002509845,0.0002448997,0.001200377],"category_scores_gemma":[0.00007041659,0.0002171674,0.0003888503,0.0002062228,0.0001650695,0.0002295537,0.0002204697,0.0004123311,0.0008227273],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006928454,"about_ca_system_score_gemma":0.0002792306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002186195,"about_ca_topic_score_gemma":0.002593275,"domain_scores_codex":[0.9999009,0.000009630576,0.000008911567,0.00003673227,0.00002276443,0.00002094403],"domain_scores_gemma":[0.9999105,0.000006840259,0.00003304903,0.000008401283,0.00001743242,0.00002382477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002400667,0.000002850603,0.000106201,0.0000220778,0.000001827078,0.00002450553,0.000003968623,0.000008739689,0.9993962,0.00001510348,0.00002192821,0.0003725328],"study_design_scores_gemma":[0.000004527433,0.0000700618,0.007343822,0.000004943825,0.00001118751,0.0003587234,0.00002115466,0.0002436939,0.9887944,0.00002854432,0.003112997,0.000005938238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9734852,0.005071064,0.01376673,0.0003133853,0.0001629416,0.00008027572,0.002142824,0.000936049,0.004041501],"genre_scores_gemma":[0.9678721,0.00238045,0.01220061,0.0002427403,0.00002704922,0.00008940646,0.004978813,0.0001796826,0.01202909],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002186195,"threshold_uncertainty_score":0.005026937,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1601614441","doi":"10.1111/j.1365-313x.2006.02977.x","title":"Dynamics of <i>MONOPTEROS</i> and PIN‐FORMED1 expression during leaf vein pattern formation in <i>Arabidopsis thaliana</i>","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":270,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"","keywords":"Auxin; Arabidopsis; Primordium; Arabidopsis thaliana; Cell biology; PIN1; Mutant; Biology; Gene; Gene expression; Genetics","authors":[{"name":"Carol L. Wenzel","is_ca":true},{"name":"Mathias Schuetz","is_ca":true},{"name":"Qian Yu","is_ca":true},{"name":"Jim Mattsson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01756650154619784,"gpt":0.2241525779327198,"spread":0.2065860763865219,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008098184,0.0001083798,0.0001089954,0.0001739261,0.0001152507,0.0003187125,0.0001320785,0.0001581568,0.0006253517],"category_scores_gemma":[0.000127377,0.0002007351,0.0001133446,0.0001081207,0.0001702153,0.0002629177,0.0001617747,0.0003934604,0.0002704768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003929885,"about_ca_system_score_gemma":0.0001067894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009425966,"about_ca_topic_score_gemma":0.001274895,"domain_scores_codex":[0.9999248,0.000007578766,0.000003646827,0.00002663577,0.00001828439,0.00001903647],"domain_scores_gemma":[0.999846,0.00002510487,0.00005499579,0.00001393076,0.00001991962,0.00004009727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003604641,0.000002375547,0.0006753229,0.000006583366,0.000001145981,0.00002015467,0.00001818258,0.00003128638,0.9986526,0.00006448234,0.000015108,0.0004766481],"study_design_scores_gemma":[0.00001233846,0.00009210753,0.09491576,0.000006113655,0.00001150612,0.0003138219,0.0000913464,0.00207225,0.9005312,0.0001331659,0.001805763,0.00001465811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973364,0.0001870487,0.001286956,0.00003073007,0.000003103511,0.000006013967,0.0002173703,0.00004439696,0.0008879096],"genre_scores_gemma":[0.9969779,0.0001167673,0.0009194072,0.00003593476,0.00000282603,0.00001414498,0.0004904222,0.00003287088,0.00140976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009425966,"threshold_uncertainty_score":0.002851367,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1877015315","doi":"10.1111/j.1365-313x.2010.04319.x","title":"Restricted access of proteins to mannan polysaccharides in intact plant cell walls","year":2010,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":269,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Mannan; Cell wall; Polysaccharide; Hemicellulose; Biochemistry; Pectin; Epitope; Secondary cell wall; Glucan; Chemistry; Monoclonal antibody; Cell; Biophysics; Biology; Cellulose; Antibody; Immunology","authors":[{"name":"Susan E. Marcus","is_ca":false},{"name":"Anthony W. Blake","is_ca":false},{"name":"Thomas A.S. Benians","is_ca":false},{"name":"Kieran J.D. Lee","is_ca":false},{"name":"Callum Poyser","is_ca":false},{"name":"Lloyd Donaldson","is_ca":false},{"name":"Olivier Leroux","is_ca":false},{"name":"Artur Rogowski","is_ca":false},{"name":"Henriette L. Petersen","is_ca":false},{"name":"A.B. Boraston","is_ca":true},{"name":"Harry J. Gilbert","is_ca":false},{"name":"William G. T. Willats","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02695165471051398,"gpt":0.2292453617398285,"spread":0.2022937070293145,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001552374,0.0003262479,0.0001973458,0.0001255251,0.0001443172,0.0003503733,0.0002079455,0.000269426,0.0005460911],"category_scores_gemma":[0.0001757206,0.0002083174,0.0001686994,0.0000603305,0.0002947502,0.000332351,0.0003078813,0.0004856634,0.0002491313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001644145,"about_ca_system_score_gemma":0.0001295857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002343748,"about_ca_topic_score_gemma":0.0003226594,"domain_scores_codex":[0.9998987,0.00001604465,0.000004710103,0.0000319438,0.00002807387,0.00002048226],"domain_scores_gemma":[0.9998165,0.00006228174,0.00004300722,0.00002624545,0.00001897396,0.00003302003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001512693,0.000001818513,0.00006478179,0.00001280684,0.000001786811,0.00001922291,0.000008438778,0.00001711192,0.999521,0.00003663052,0.000002722291,0.0002985581],"study_design_scores_gemma":[0.000003247923,0.0000594055,0.002910891,0.000002909637,0.000007637378,0.0002643672,0.00001776958,0.0005204405,0.9954275,0.000100721,0.0006812564,0.000003976469],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895817,0.001225524,0.008304915,0.00003399442,0.000009439128,0.000008169031,0.00004409067,0.00004602771,0.000746116],"genre_scores_gemma":[0.9946392,0.0005041491,0.003484431,0.00004520127,0.000006678502,0.00001562895,0.0001400528,0.00001848134,0.001146175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005460911,"threshold_uncertainty_score":0.001826882,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129452863","doi":"10.1111/j.1365-313x.2004.02052.x","title":"The <i>Arabidopsis</i> transcription factor HY5 integrates light and hormone signaling pathways","year":2004,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Light effects on plants","field":"Agricultural and Biological Sciences","cited_by":268,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Auxin; Arabidopsis; Transcription factor; Mutant; Biology; Cell biology; Signal transduction; Phenotype; Plant hormone; Genetics; Gene","authors":[{"name":"Corinne P. Cluis","is_ca":true},{"name":"Céline F. Mouchel","is_ca":true},{"name":"Christian S. Hardtke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02191914888711458,"gpt":0.1820822294653875,"spread":0.1601630805782729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001117423,0.0005965116,0.0001964488,0.0002359438,0.0002366287,0.0004556733,0.0002695154,0.0001768655,0.002136197],"category_scores_gemma":[0.0001018296,0.0002261562,0.000275604,0.000145804,0.0002100246,0.0003836886,0.0003802415,0.0003989076,0.001028695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006603273,"about_ca_system_score_gemma":0.0002778667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001606689,"about_ca_topic_score_gemma":0.002635152,"domain_scores_codex":[0.9998484,0.00001558432,0.00000785847,0.00005313304,0.00003926583,0.00003581559],"domain_scores_gemma":[0.999884,0.00001112204,0.0000321354,0.0000181295,0.00001297165,0.00004158662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002724477,0.000003241773,0.0004498455,0.00001807793,0.000002299064,0.00002602639,0.000007051653,0.00002336792,0.9975131,0.0001558143,0.00006627723,0.001707653],"study_design_scores_gemma":[0.00001325944,0.0001052333,0.04149758,0.00001498325,0.000030464,0.0004074064,0.00006692305,0.001538545,0.946104,0.0002810714,0.009925774,0.00001464204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.971825,0.002473688,0.0158008,0.0002230158,0.00005309051,0.00002573464,0.001427784,0.0009624499,0.007208406],"genre_scores_gemma":[0.9886974,0.000366518,0.003845358,0.0001006287,0.00001336642,0.000008841042,0.001561382,0.0001198514,0.005286693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002136197,"threshold_uncertainty_score":0.007146299,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139377382","doi":"10.1046/j.1365-313x.2001.01052.x","title":"Cold‐activation of <i>Brassica napus BN115</i> promoter is mediated by structural changes in membranes and cytoskeleton, and requires Ca<sup>2+</sup> influx","year":2001,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":268,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"","keywords":"Cell biology; Biology; Actin cytoskeleton; Biochemistry; Microtubule; Kinase; Tyrosine phosphorylation; Cytoskeleton; Molecular biology; Cell","authors":[{"name":"Veena Sangwan","is_ca":true},{"name":"Inge Foulds","is_ca":true},{"name":"Jas Singh","is_ca":true},{"name":"Rajinder S. Dhindsa","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01449567742677523,"gpt":0.2095578250809218,"spread":0.1950621476541465,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006613843,0.000705874,0.0002274911,0.0001582351,0.0002297434,0.0002469356,0.0002756289,0.0001768147,0.001426306],"category_scores_gemma":[0.00007466366,0.0002168182,0.0003199778,0.0001378745,0.0002250459,0.0001875839,0.0002536192,0.0005101544,0.0005732742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006551957,"about_ca_system_score_gemma":0.0002058075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003119651,"about_ca_topic_score_gemma":0.005110116,"domain_scores_codex":[0.9999039,0.000008832787,0.000007594771,0.00003490731,0.0000280861,0.00001661953],"domain_scores_gemma":[0.9998795,0.00002254336,0.00003912978,0.00001472586,0.00001648251,0.00002769197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001576088,0.000002472028,0.00005106083,0.00001433394,0.000001030086,0.000008781987,0.000007371909,0.000008375836,0.9996693,0.00001762071,0.000009626472,0.0001942572],"study_design_scores_gemma":[0.000008073233,0.00005552927,0.007312482,0.000009061067,0.00001091489,0.0001230414,0.00002840654,0.0004113519,0.989471,0.00003048242,0.002533417,0.000006326621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860559,0.002132093,0.006792711,0.0001539825,0.00004438851,0.00004560564,0.001163166,0.000284247,0.003327886],"genre_scores_gemma":[0.9836755,0.001117419,0.004480993,0.0001021238,0.00001454668,0.00007333306,0.00440805,0.000131654,0.00599636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003119651,"threshold_uncertainty_score":0.006202996,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166688969","doi":"10.1111/tpj.13030","title":"Jasmonic acid promotes degreening via <scp>MYC</scp>2/3/4‐ and <scp>ANAC</scp>019/055/072‐mediated regulation of major chlorophyll catabolic genes","year":2015,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":267,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Centro Nacional de Biotecnología; Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Fudan University; Science and Technology Commission of Shanghai Municipality; Chinese Academy of Sciences; Institute of Genetics; National Natural Science Foundation of China; Hokkaido University; University of East Anglia","keywords":"Arabidopsis; Jasmonic acid; Biology; Mutant; Cell biology; Biochemistry; Gene; Chemistry; Molecular biology","authors":[{"name":"Xiaoyu Zhu","is_ca":false},{"name":"Junyi Chen","is_ca":false},{"name":"Zuokun Xie","is_ca":false},{"name":"Jiong Gao","is_ca":false},{"name":"Guodong Ren","is_ca":false},{"name":"Shan Gao","is_ca":false},{"name":"Xin Zhou","is_ca":false},{"name":"Benke Kuai","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01829159360861443,"gpt":0.2257080728938041,"spread":0.2074164792851897,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008270022,0.0003912385,0.00016203,0.0001323167,0.00011637,0.0002078583,0.000156301,0.0001537376,0.001083218],"category_scores_gemma":[0.00005313692,0.0001643082,0.0002399036,0.0000956059,0.0001823847,0.000164193,0.0002370499,0.0004506355,0.0003653017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003202534,"about_ca_system_score_gemma":0.0001959278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008318527,"about_ca_topic_score_gemma":0.001392747,"domain_scores_codex":[0.99992,0.00001101814,0.000007718831,0.00002186951,0.00001470992,0.00002473057],"domain_scores_gemma":[0.999886,0.00001109213,0.00003594978,0.00001117608,0.000009249959,0.00004642457],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004310563,0.000006926324,0.00004827292,0.000006852174,0.000001020579,0.000008016659,0.000002741911,0.000008665942,0.9997016,0.00001791371,0.00001128193,0.0001435099],"study_design_scores_gemma":[0.00001820642,0.0001035213,0.007365201,0.000002922648,0.000008481745,0.00009904582,0.00001611057,0.001054403,0.9897125,0.00003621638,0.001579249,0.000004147176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959417,0.0005852061,0.001653615,0.00007813344,0.000018575,0.00001690141,0.0004128437,0.0001305192,0.001162507],"genre_scores_gemma":[0.9942998,0.0003180985,0.0009822734,0.00007870359,0.000008131525,0.00002617666,0.000825357,0.0000417184,0.003419741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001083218,"threshold_uncertainty_score":0.003623724,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}