{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":194,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":194,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"5d1ed3d7b88b","filters":{"venue":"Trends in Microbiology"}},"results":[{"id":"W2306794997","doi":"10.1016/j.tim.2016.03.003","title":"Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":3112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Biology; Coronavirus disease 2019 (COVID-19); Virology; Recombination; Pathogenesis; Coronavirus; Epidemiology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Genetics; Evolutionary biology; Immunology; Gene; Disease; Outbreak; Infectious disease (medical specialty)","authors":[{"name":"Shuo Su","is_ca":false},{"name":"Gary Wong","is_ca":false},{"name":"Weifeng Shi","is_ca":false},{"name":"Jun Liu","is_ca":false},{"name":"Alexander Lai","is_ca":false},{"name":"Jiyong Zhou","is_ca":false},{"name":"Yuhai Bi","is_ca":false},{"name":"George F. Gao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1532645710454261,"gpt":0.4499215090295181,"spread":0.296656937984092,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007557953,0.0003277928,0.002453967,0.0009363772,0.00002233027,0.000001339975,0.0002245454,0.0007209937,0.00008597207],"category_scores_gemma":[0.0004453191,0.000216697,0.0002776087,0.000383841,0.0005194396,0.00001430585,0.0001562171,0.0002995649,0.00006326244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001307126,"about_ca_system_score_gemma":0.0002284987,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005922111,"about_ca_topic_score_gemma":0.00004571108,"domain_scores_codex":[0.9971735,0.0007887416,0.0009873629,0.0005889907,0.00003583368,0.0004255672],"domain_scores_gemma":[0.9978553,0.001242231,0.0003522692,0.0004473789,0.00007331432,0.00002952277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003073066,0.0000768801,0.01106043,0.002632331,0.0001135163,0.00002807655,0.00001336804,2.068862e-9,0.002099972,0.00007372833,0.0003582517,0.9835127],"study_design_scores_gemma":[0.0007175515,0.0002765579,0.003226198,0.003247487,0.0002085249,0.000578598,0.000002567874,2.152483e-7,0.0001232741,0.0001249441,0.9913018,0.000192322],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00317294,0.9958005,0.000008857006,0.00006767578,0.0001613681,0.0002807241,0.0001602348,0.00001881267,0.0003288794],"genre_scores_gemma":[0.0001031532,0.997176,0.0003888805,0.001890384,0.00007443398,0.00008818892,0.00007540933,0.00004100655,0.000162565],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9909435,"threshold_uncertainty_score":0.8836648,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984693521","doi":"10.1016/j.tim.2011.04.005","title":"Pseudomonas aeruginosa: all roads lead to resistance","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1289,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Resistome; Biology; Pseudomonas aeruginosa; Biofilm; Microbiology; Swarming motility; Swarming (honey bee); Antibiotics; Antibiotic resistance; Mutant; Bacterial outer membrane; Quorum sensing; Bacteria; Gene; Genetics; Escherichia coli","authors":[{"name":"Elena B. M. Breidenstein","is_ca":true},{"name":"César de la Fuente‐Núñez","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0435767434248896,"gpt":0.3148767395638631,"spread":0.2712999961389735,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002412545,0.0006143599,0.00137015,0.0003626465,0.00004376214,0.00001953942,0.0005425074,0.001157416,0.0001041906],"category_scores_gemma":[0.00003015092,0.0005399493,0.00041989,0.0003162585,0.0001394446,0.000002367196,0.0003441665,0.0003485389,0.0001988529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006005727,"about_ca_system_score_gemma":0.00009834557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004419306,"about_ca_topic_score_gemma":0.001052646,"domain_scores_codex":[0.9972036,0.0002921013,0.000704944,0.001048809,0.00002824046,0.0007223431],"domain_scores_gemma":[0.9987848,0.00001823883,0.0002543101,0.0007966253,0.00003769956,0.0001083472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008158024,0.00007413439,0.000004659807,0.0004589857,0.0001701469,0.00003049023,0.00004348985,1.311089e-7,0.2316119,0.0001183724,0.02951232,0.7378938],"study_design_scores_gemma":[0.000224418,0.0001536232,0.000006093305,0.000705677,0.000106391,0.0001294743,0.000002955398,1.51702e-8,0.00297061,0.000002957252,0.9951004,0.0005974238],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00101379,0.9941434,0.000006811507,0.00006632108,0.0008589723,0.0002517411,0.0002423881,0.0000224418,0.003394138],"genre_scores_gemma":[0.0001937731,0.9853735,0.001771715,0.000353555,0.0004629173,0.000039505,0.002663546,0.00008792843,0.009053591],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.965588,"threshold_uncertainty_score":0.9997052,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060306551","doi":"10.1016/s0966-842x(00)01823-0","title":"The role of cationic antimicrobial peptides in innate host defences","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":1213,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Heart, Lung, and Blood Institute","keywords":"Biology; Antimicrobial peptides; Innate immune system; Antimicrobial; Microbiology; Beta defensin; Host (biology); Antifungal; Cationic polymerization; Inflammation; Antibacterial peptide; Bacteria; Immunology; Immune system; Antibacterial activity; Ecology; Genetics; Chemistry","authors":[{"name":"Robert E. W. Hancock","is_ca":true},{"name":"Gill Diamond","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01858743915554968,"gpt":0.2824068007323553,"spread":0.2638193615768056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005046386,0.0006514535,0.002210684,0.0009475016,0.0002016912,0.0000293688,0.001047996,0.001131259,0.0004269338],"category_scores_gemma":[0.00003777753,0.0004598444,0.0005465125,0.0008668931,0.001460151,0.00009112751,0.0002297226,0.001152163,0.0003200901],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001371149,"about_ca_system_score_gemma":0.0002687642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007928686,"about_ca_topic_score_gemma":0.002577512,"domain_scores_codex":[0.9959568,0.0009023616,0.001506858,0.0007002699,0.00002044969,0.0009132762],"domain_scores_gemma":[0.9980343,0.000626776,0.000716002,0.0005675729,0.00003853594,0.00001682349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008362636,0.0002011656,0.0001425487,0.0005310907,0.0002276422,0.000008032282,0.0002914266,0.000003530952,0.01409946,0.0005593193,0.002153122,0.981699],"study_design_scores_gemma":[0.000465132,0.00009020993,0.00004595794,0.002491565,0.0001289474,0.0002198789,0.000119945,1.620846e-7,0.001847912,0.00008480812,0.994036,0.0004695232],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004015378,0.9916809,2.508079e-7,0.00005153826,0.0006729231,0.0003449613,0.0004623186,0.00003265626,0.002739112],"genre_scores_gemma":[0.01591301,0.9796951,0.00003041097,0.00003236004,0.00005166871,0.00005749919,0.001065519,0.00005317744,0.003101286],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9918829,"threshold_uncertainty_score":0.9997853,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163811015","doi":"10.1016/s0966-842x(02)00002-1","title":"Candida biofilms and their role in infection","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1141,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biofilm; Microbiology; Candida albicans; Biology; Fluconazole; Hypha; Amphotericin B; Antifungal; Candida infections; Bacteria","authors":[{"name":"Laura Douglas","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03407321368086098,"gpt":0.3399156242173658,"spread":0.3058424105365048,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002880743,0.0002879079,0.001463393,0.0005563322,0.00001921682,0.000004751393,0.00005037838,0.0005692647,0.0002109616],"category_scores_gemma":[0.00003213015,0.0001965437,0.0001676559,0.0004800368,0.0001441181,0.00001805108,0.00003135445,0.0005395924,0.00001953975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001854094,"about_ca_system_score_gemma":0.000112487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003070125,"about_ca_topic_score_gemma":0.004043225,"domain_scores_codex":[0.9985462,0.0002382847,0.0004560805,0.0004453782,0.00001613988,0.0002979582],"domain_scores_gemma":[0.9995016,0.00007446922,0.0001059441,0.0002606687,0.00001327582,0.00004398908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002544399,0.00009026501,0.01726131,0.001794596,0.00003663827,0.00001994264,0.00007037831,3.004878e-8,0.0004222865,0.00002546661,0.0002837686,0.9799699],"study_design_scores_gemma":[0.0004741787,0.000126085,0.003443543,0.002131961,0.00007552558,0.0002305463,0.00001973013,3.666074e-7,0.00001715768,0.00002098159,0.9932684,0.0001915035],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01227508,0.9847118,9.919979e-7,0.00001365169,0.0001289144,0.0002064471,0.00004883091,0.00001431399,0.002600006],"genre_scores_gemma":[0.005259823,0.9929379,0.00002809298,0.0000578938,0.0000329548,0.00002542141,0.0003557869,0.00001997593,0.001282117],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9929847,"threshold_uncertainty_score":0.8014819,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982952028","doi":"10.1016/j.tim.2011.11.002","title":"The pig: a model for human infectious diseases","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":1002,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Infectious disease (medical specialty); Biology; Animal model; Disease; Human disease; Animal health; Human animal; Human health; Animal species; Zoology; Livestock; Pathology; Medicine; Ecology; Environmental health","authors":[{"name":"François Meurens","is_ca":false},{"name":"Artur Summerfield","is_ca":false},{"name":"Hans Nauwynck","is_ca":false},{"name":"Linda J. Saif","is_ca":false},{"name":"Volker Gerdts","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1315366021522683,"gpt":0.4368106393489603,"spread":0.305274037196692,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003660326,0.0003464638,0.00186915,0.0004065712,0.0001382313,0.000008801747,0.0003131822,0.0004039526,0.00008035245],"category_scores_gemma":[0.0002336743,0.0002044024,0.0006910322,0.0001696812,0.0004178806,0.00001611204,0.0001490281,0.0005615416,0.00003391552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001572308,"about_ca_system_score_gemma":0.0001239806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000391665,"about_ca_topic_score_gemma":0.0004279535,"domain_scores_codex":[0.9975922,0.0003842023,0.000697985,0.0004753524,0.00002245587,0.0008278794],"domain_scores_gemma":[0.999022,0.0001387916,0.0001991513,0.0004637594,0.00004383317,0.0001324612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009470411,0.0001320543,0.0001543,0.001885462,0.0002075426,0.00001872592,0.00001611424,7.022738e-7,0.00002333358,0.000629973,0.02645294,0.9703841],"study_design_scores_gemma":[0.0008311707,0.0007174226,0.00002996663,0.001140338,0.0002870447,0.0003933038,0.000001950673,0.00003679132,1.063282e-7,0.0005849982,0.9958317,0.0001452289],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004043332,0.9978033,0.0001457306,0.0001303413,0.0001665836,0.0006147991,0.0004147744,0.00004404532,0.0006399559],"genre_scores_gemma":[0.0003227704,0.9915243,0.0001149526,0.0001522252,0.000243316,0.0007147561,0.001757187,0.00005060075,0.005119892],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9702389,"threshold_uncertainty_score":0.8335287,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2558664061","doi":"10.1016/j.tim.2016.11.008","title":"Disentangling Interactions in the Microbiome: A Network Perspective","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Complex Network Analysis Techniques","field":"Physics and Astronomy","cited_by":890,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiome; Perspective (graphical); Computational biology; Evolutionary biology; Ecology; Genetics; Computer science","authors":[{"name":"Mehdi Layeghifard","is_ca":true},{"name":"David Hwang","is_ca":true},{"name":"David S. Guttman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04128318183299028,"gpt":0.3906388598411947,"spread":0.3493556780082044,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003594816,0.0004354595,0.001326986,0.0006887768,0.00007733022,0.00003441917,0.0007142076,0.0001137239,0.001163449],"category_scores_gemma":[0.000003729646,0.0002651965,0.0006673246,0.001406153,0.0001427953,0.00004339239,0.0002004011,0.0007462212,0.00008236685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003144881,"about_ca_system_score_gemma":0.00005343154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001757145,"about_ca_topic_score_gemma":0.0006784822,"domain_scores_codex":[0.9974433,0.000726953,0.000689348,0.0005719601,0.00002772311,0.0005407193],"domain_scores_gemma":[0.9985759,0.0004792548,0.0003515391,0.0005425821,0.00002797113,0.00002280099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004853006,0.0001457617,0.0003638827,0.00005936949,0.000263828,0.0000103581,0.0002925018,0.000003046651,0.00001017256,0.008843093,0.01454468,0.9754584],"study_design_scores_gemma":[0.0001356778,0.00001230586,0.000006770757,0.002425581,0.0001753694,0.00002517928,0.0001458147,0.000003000489,6.330679e-7,0.001910911,0.9948598,0.0002989648],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001895102,0.9900738,0.0001833585,0.0001492644,0.0002567498,0.0003153232,0.0001824173,0.00003615427,0.008783968],"genre_scores_gemma":[0.003393337,0.9908295,0.0005112099,0.00007119292,0.001843059,0.0004792326,0.001323509,0.00008204918,0.001466946],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9803151,"threshold_uncertainty_score":0.99998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2898147830","doi":"10.1016/j.tim.2018.09.008","title":"The Human Microbiome and Child Growth – First 1000 Days and Beyond","year":2018,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Birth, Development, and Health","field":"Medicine","cited_by":795,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Centre for Disease Control; University of British Columbia","funders":"Medical Research Council; Wellcome Trust","keywords":"Biology; Microbiome; Dysbiosis; Human microbiome; Ecological succession; Immune system; Endocrine system; Ecology; Immunology; Genetics; Endocrinology","authors":[{"name":"Ruairi C. Robertson","is_ca":false},{"name":"Amee R. Manges","is_ca":true},{"name":"B. Brett Finlay","is_ca":true},{"name":"Andrew J. Prendergast","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03305832245985928,"gpt":0.3342447837525093,"spread":0.30118646129265,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005591043,0.0004940854,0.001638121,0.0005477342,0.0004856896,0.00002888132,0.000232373,0.0006945561,0.0001200944],"category_scores_gemma":[0.00001729187,0.0003084807,0.0001367895,0.0003595178,0.0008837465,0.00002253592,0.0002277594,0.0007253621,0.00004784721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001338744,"about_ca_system_score_gemma":0.0001390641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005244477,"about_ca_topic_score_gemma":0.0009342888,"domain_scores_codex":[0.9977023,0.0001737274,0.0007572728,0.0007087297,0.00003622059,0.0006217427],"domain_scores_gemma":[0.9989807,0.0001431108,0.0002918213,0.0004083393,0.00003999198,0.0001360614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008015728,0.0003168008,0.001566242,0.03142667,0.0009060306,0.0001218303,0.001644636,1.44738e-9,0.0002567362,0.02976668,0.0965171,0.8373971],"study_design_scores_gemma":[0.0008290457,0.0002327353,0.0007153613,0.003302919,0.0002370193,0.002059885,0.00001571186,3.061596e-8,0.000007804045,0.0002680713,0.9920258,0.0003056042],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003772017,0.9865195,3.331858e-7,0.001040401,0.0003275192,0.0004048345,0.0001266034,0.0000334974,0.01117016],"genre_scores_gemma":[0.00012838,0.9971281,0.0001548333,0.0005539514,0.0002810139,0.00003863361,0.0008893944,0.00005479558,0.0007709544],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8955087,"threshold_uncertainty_score":0.9999367,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2489596030","doi":"10.1016/j.tim.2016.06.009","title":"Antibiotic Adjuvants: Rescuing Antibiotics from Resistance","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":604,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Antibiotics; Antibiotic resistance; Biology; Microbiology","authors":[{"name":"Gerard D. Wright","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02398647593707321,"gpt":0.3165893036542864,"spread":0.2926028277172132,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000352325,0.0009213433,0.002234376,0.0004836309,0.00008008344,0.00004284736,0.001163801,0.001732451,0.0002384989],"category_scores_gemma":[0.000164632,0.0007240345,0.0005845696,0.000451796,0.0005231703,0.000007372166,0.0004593678,0.0004860113,0.0002219008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001590553,"about_ca_system_score_gemma":0.0002065666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001804667,"about_ca_topic_score_gemma":0.0004625094,"domain_scores_codex":[0.9953561,0.0006078654,0.001300743,0.001692655,0.00008469033,0.0009579366],"domain_scores_gemma":[0.997377,0.0001351243,0.0007124606,0.001605526,0.00006145365,0.0001084367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001904965,0.0002093619,0.0009601517,0.002671119,0.0006797657,0.0001969274,0.00002910926,3.074165e-7,0.05533842,0.0002066793,0.02356543,0.9159522],"study_design_scores_gemma":[0.0005305402,0.00007638097,0.0001828479,0.01040432,0.0001621373,0.00004965236,0.000007953259,8.684184e-8,0.001079355,0.00002916949,0.9866041,0.0008734418],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00159222,0.9926373,0.0000844791,0.00003086636,0.001296326,0.0002816356,0.001641735,0.00003905946,0.002396372],"genre_scores_gemma":[0.001313559,0.9847698,0.001632484,0.00006508809,0.000779525,0.00000202535,0.00398677,0.000171702,0.007279074],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9630387,"threshold_uncertainty_score":0.9995635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119123521","doi":"10.1016/s0966-842x(00)01703-0","title":"Horizontal gene transfer and the origin of species: lessons from bacteria","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":567,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Horizontal gene transfer; Biology; Bacteria; Gene; Genetic algorithm; Genetics; Gene transfer; Pathogenicity island; Mechanism (biology); Evolutionary biology; Bacterial genetics; Genome; Escherichia coli","authors":[{"name":"Fernando de la Cruz","is_ca":false},{"name":"Julian Davies","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.035342423686712,"gpt":0.2964585517691957,"spread":0.2611161280824837,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001432662,0.0003479483,0.00123003,0.00009621678,0.00003849897,0.000008232066,0.0003240831,0.0004144387,0.00014616],"category_scores_gemma":[0.000005943647,0.0002251362,0.0003094739,0.0001043834,0.0005278895,2.971569e-7,0.0001217179,0.0001676095,0.000004117804],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001317512,"about_ca_system_score_gemma":0.00005840687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009994284,"about_ca_topic_score_gemma":0.0003305485,"domain_scores_codex":[0.9984993,0.0002509017,0.000492227,0.0004876069,0.00002084059,0.0002491361],"domain_scores_gemma":[0.999419,0.00006433296,0.00009229551,0.0003840385,0.0000136089,0.0000266858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002067699,0.00006601724,0.00003737982,0.0002869171,0.0007996441,0.000004789782,0.0002221116,7.702064e-7,0.1417998,0.0002115473,0.0006984334,0.8556659],"study_design_scores_gemma":[0.0008677208,0.0001011676,0.0000959734,0.0001442237,0.0002420782,0.00004171769,0.0000123843,1.002902e-7,0.001133631,0.00002354116,0.9971054,0.0002320825],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04151846,0.9557696,0.000004693082,0.00004705764,0.000206975,0.0001660587,0.001820044,0.000001399328,0.0004656804],"genre_scores_gemma":[0.005087066,0.9927762,0.000174038,0.00002823797,0.0002192543,0.00003785879,0.001208561,0.0000291468,0.0004396439],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.996407,"threshold_uncertainty_score":0.9180787,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090952227","doi":"10.1016/s0966-842x(02)02400-9","title":"Is quorum sensing a side effect of diffusion sensing?","year":2002,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":544,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Quorum sensing; Autoinducer; Secretion; Biology; Effector; Function (biology); Extracellular; Diffusion; Cell biology; Population; Bacteria; Microbiology; Biophysics; Biofilm; Biochemistry; Genetics; Physics","authors":[{"name":"Robert R. Redfield","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01897051753463768,"gpt":0.2938558135255243,"spread":0.2748852959908866,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003107866,0.0006677144,0.002069343,0.0004304318,0.00005600753,0.0000151134,0.0002146849,0.001380319,0.00006457043],"category_scores_gemma":[0.00005570273,0.0005305327,0.0007202413,0.0003486396,0.0002275698,0.000002099498,0.0003140294,0.0003827125,0.00002892844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004663334,"about_ca_system_score_gemma":0.00004324519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006553744,"about_ca_topic_score_gemma":0.00008077126,"domain_scores_codex":[0.9969673,0.0006632388,0.0008631735,0.0008571323,0.0000468381,0.0006022851],"domain_scores_gemma":[0.9986156,0.00008399821,0.0005172292,0.0006802413,0.00003790724,0.00006499355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003165519,0.00001732987,0.000005236994,0.0007973608,0.00008419487,0.00001841637,0.00001531892,1.081889e-7,0.3716407,5.684743e-7,0.001250188,0.6261389],"study_design_scores_gemma":[0.0005854825,0.0005298249,0.000003722908,0.002403266,0.0002856735,0.0007022286,0.000003129098,0.000004826328,0.03474335,6.156762e-7,0.9602025,0.00053539],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02963959,0.9683742,0.000005084537,0.00003544981,0.0007619807,0.0002604901,0.000200164,0.00001748894,0.0007055856],"genre_scores_gemma":[0.002518288,0.993804,0.0005318744,0.00009666527,0.0003594552,0.00000152069,0.001508727,0.00009758119,0.001081934],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9589523,"threshold_uncertainty_score":0.9999161,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084949910","doi":"10.1016/j.tim.2012.12.001","title":"Development of intestinal microbiota in infants and its impact on health","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":531,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Gut flora; Microbiology; Immunology","authors":[{"name":"Sébastien Matamoros","is_ca":true},{"name":"Christèle Gras‐Le Guen","is_ca":false},{"name":"Françoise Le Vacon","is_ca":false},{"name":"G. Potel","is_ca":false},{"name":"Marie-France de la Cochetière","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04850853412766679,"gpt":0.3971332112431049,"spread":0.348624677115438,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004418493,0.0005621047,0.001715887,0.0007948604,0.00003808613,0.000008247953,0.0003329932,0.0006664554,0.00007929331],"category_scores_gemma":[0.00002967828,0.0004397157,0.0001797623,0.0003466642,0.00009944074,0.000002603033,0.0002597584,0.0004844029,0.00003251829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001938686,"about_ca_system_score_gemma":0.0008065259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008262764,"about_ca_topic_score_gemma":0.0006251066,"domain_scores_codex":[0.9970394,0.0003171996,0.001210066,0.0007407774,0.00002816677,0.0006643729],"domain_scores_gemma":[0.9989307,0.00004065939,0.0005429787,0.0003422376,0.00003411031,0.0001093055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005428186,0.000204687,0.0001029504,0.002987409,0.00008163058,0.000004244573,0.0001518013,7.614488e-7,0.09861922,0.00001036257,0.002108257,0.8956744],"study_design_scores_gemma":[0.0009933606,0.000789954,0.001511686,0.00637011,0.00002553499,0.0004075757,0.00001785773,6.24107e-7,0.001482406,0.000001872895,0.9877467,0.0006523732],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06773759,0.9313477,0.00000122345,0.0000337833,0.000128321,0.0004660361,0.000189272,0.00000554406,0.0000904902],"genre_scores_gemma":[0.002619363,0.9933546,0.001442705,0.0001201696,0.00005139876,0.00004643841,0.002065261,0.0000523942,0.0002477317],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9856384,"threshold_uncertainty_score":0.9998055,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2559683962","doi":"10.1016/j.tim.2016.11.007","title":"Lactobacillus iners : Friend or Foe?","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":461,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Biology; Dysbiosis; Microbiology; Metagenomics; Bacterial vaginosis; Lactobacillus; Gardnerella vaginalis; Whole genome sequencing; Genome; Genetics; Microbiome; Gene; Bacteria","authors":[{"name":"Mariya Petrova","is_ca":false},{"name":"Gregor Reid","is_ca":true},{"name":"Mario Vaneechoutte","is_ca":false},{"name":"Sarah Lebeer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08520265691531438,"gpt":0.4002956995719063,"spread":0.3150930426565919,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000778831,0.0008306506,0.002682892,0.002474474,0.0001455864,0.00001927907,0.0009479938,0.001977896,0.01582681],"category_scores_gemma":[0.0004262878,0.0004967758,0.0006007988,0.001377402,0.001065389,0.0001071497,0.0004324714,0.001772224,0.01039779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005940483,"about_ca_system_score_gemma":0.0004704281,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008104907,"about_ca_topic_score_gemma":0.0002413182,"domain_scores_codex":[0.9943738,0.001676314,0.001158967,0.001474076,0.00002759522,0.00128922],"domain_scores_gemma":[0.9972031,0.0009566089,0.0004217676,0.001276088,0.00009817875,0.00004429123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009713251,0.0001998621,0.00001796828,0.0006124785,0.0005208775,0.00005919013,0.0000537281,9.621399e-8,0.002967436,0.0002007638,0.01499569,0.9802748],"study_design_scores_gemma":[0.0008892384,0.0002787953,0.00001616709,0.001717555,0.0001315806,0.002211552,0.00001548009,6.543361e-9,0.0001766992,0.00002064078,0.9939494,0.0005929334],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0000711127,0.9872827,0.00001039478,0.0001150609,0.002186037,0.0005159671,0.0006756596,0.0001370077,0.009006057],"genre_scores_gemma":[0.00009080776,0.9310485,0.0000387693,0.00002039705,0.0001482383,0.0002732219,0.001383951,0.00009552256,0.06690066],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9796818,"threshold_uncertainty_score":0.9997484,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093427530","doi":"10.1016/s0966-842x(01)02098-4","title":"Divalent-metal transport by NRAMP proteins at the interface of host–pathogen interactions","year":2001,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":422,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"DMT1; Phagosome; Biology; Divalent; Intracellular; Extracellular; Cell biology; Divalent metal; Microbiology; Efflux; Pathogen; Biochemistry; Transporter; Metal; Chemistry; Gene","authors":[{"name":"John Forbes","is_ca":false},{"name":"Phillippe Gros","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05122398394064774,"gpt":0.4066023471450601,"spread":0.3553783632044123,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057347,0.0006255325,0.001896059,0.000528744,0.0001332307,0.000007759033,0.0008713293,0.0005189849,0.001968555],"category_scores_gemma":[0.00003494611,0.0004474175,0.0005834962,0.0008014236,0.0004167916,0.00006462645,0.0001649442,0.001310994,0.0001204494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007680659,"about_ca_system_score_gemma":0.00006604593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002688224,"about_ca_topic_score_gemma":0.002583916,"domain_scores_codex":[0.9957902,0.0009684293,0.001616054,0.0007805719,0.00009386748,0.0007508267],"domain_scores_gemma":[0.9977747,0.0003530495,0.0008938514,0.0008737881,0.00003785723,0.00006680832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001028872,0.0004362581,0.0001962626,0.002383809,0.0002148923,0.00001050203,0.0005323559,0.000001741513,0.007306615,0.00000631588,0.01045791,0.9783505],"study_design_scores_gemma":[0.0003793571,0.0002725348,0.00003448371,0.002551294,0.0004012766,0.0003209248,0.00004135304,2.800617e-7,0.0005237908,0.000002797616,0.9951294,0.0003425059],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001936439,0.9898745,0.00002824992,0.0005301093,0.00234323,0.001221397,0.003433105,0.00006124238,0.0005717055],"genre_scores_gemma":[0.001287592,0.9880677,0.0003070707,0.00009984231,0.0001468189,0.0003390503,0.003112191,0.0001414742,0.006498285],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9846715,"threshold_uncertainty_score":0.9997978,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091586024","doi":"10.1016/s0966-842x(00)01734-0","title":"The eukaryotic-like Ser/Thr protein kinases of Mycobacterium tuberculosis","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":377,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Kinase; Mycobacterium tuberculosis; Cell biology; Phosphatase; Bacteria; Genome; Genetics; Microbiology; Tuberculosis; Gene; Phosphorylation","authors":[{"name":"Yossef Av‐Gay","is_ca":true},{"name":"Martin Everett","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04743562510530257,"gpt":0.3651540644244419,"spread":0.3177184393191393,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009985397,0.0006604117,0.003658177,0.0008413257,0.00009802201,0.00001223544,0.000616549,0.001059144,0.001466774],"category_scores_gemma":[0.0004316684,0.0003869201,0.0009616702,0.0009478697,0.0008095553,0.00003507685,0.0002249455,0.0013407,0.0002610767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002346877,"about_ca_system_score_gemma":0.000333978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003130834,"about_ca_topic_score_gemma":0.0003489275,"domain_scores_codex":[0.9946013,0.001666752,0.00164547,0.0008034686,0.0001037657,0.001179225],"domain_scores_gemma":[0.9970955,0.001105614,0.0004103525,0.001126454,0.00008042705,0.0001817135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002132292,0.0002149919,0.0003105953,0.004485944,0.0005328823,0.00008706967,0.00002610529,4.194049e-7,0.0004526487,0.00005902111,0.01441831,0.9791988],"study_design_scores_gemma":[0.0004571398,0.000577085,0.0005554925,0.005145018,0.0003972974,0.0007633757,0.00001075274,0.000001140773,0.00004364725,0.00001772478,0.991727,0.0003043555],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001466966,0.9932113,4.251046e-7,0.001035996,0.0003105007,0.0009119774,0.0003686211,0.00004360021,0.002650561],"genre_scores_gemma":[0.0003730122,0.9926903,0.0001246237,0.0001997499,0.0002311623,0.0003239588,0.001417884,0.00007753954,0.004561731],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9788944,"threshold_uncertainty_score":0.9998583,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131891835","doi":"10.1016/j.tim.2012.11.003","title":"Phage–bacteria infection networks","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":356,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"Biology; Genome; Computational biology; Evolutionary biology; Isolation (microbiology); Bacterial genome size; Bacteria; Dominance (genetics); Genetics; Ecology; Microbiology; Gene","authors":[{"name":"Joshua S. Weitz","is_ca":false},{"name":"Timothée Poisot","is_ca":true},{"name":"Justin R. Meyer","is_ca":false},{"name":"César O. Flores","is_ca":false},{"name":"Sergi Valverde","is_ca":false},{"name":"Matthew B. Sullivan","is_ca":false},{"name":"Michael Hochberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0404476157803673,"gpt":0.3253426086433618,"spread":0.2848949928629945,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000184599,0.0004184367,0.0009595056,0.0002305896,0.00006969193,0.00002530365,0.0002568159,0.0006462527,0.02686324],"category_scores_gemma":[0.000004034711,0.0003542287,0.0003466779,0.0005271987,0.0001644203,0.0001545878,0.0003200094,0.0006662938,0.002677771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004453164,"about_ca_system_score_gemma":0.00000809801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004690331,"about_ca_topic_score_gemma":0.001214821,"domain_scores_codex":[0.9980909,0.0002754969,0.0005538434,0.0004768053,0.00001905165,0.0005839459],"domain_scores_gemma":[0.9992406,0.00005072167,0.0002867063,0.0003471008,0.000002888892,0.00007200008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002731006,0.00008726342,0.00004570767,0.0001137998,0.00003025398,0.000004912208,0.0000212823,0.000004969989,0.001507595,0.000002740132,0.003051166,0.9951276],"study_design_scores_gemma":[0.00009368219,0.00002750474,0.0008558747,0.0003242381,0.0001836544,0.000354693,5.417035e-7,0.00000119454,0.000005470294,9.063636e-7,0.9978331,0.0003191504],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003550877,0.9914668,0.00004441618,0.00001118049,0.002517454,0.0002109041,0.00007283775,0.00006279582,0.005258561],"genre_scores_gemma":[0.0004647881,0.9934759,0.0001590585,0.00005950516,0.0002949884,0.00006157142,0.001052961,0.00005042417,0.004380783],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9948084,"threshold_uncertainty_score":0.999891,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2594854482","doi":"10.1016/j.tim.2017.02.005","title":"Critical Streptococcus suis Virulence Factors: Are They All Really Critical?","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":351,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto; Université de Montréal","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Wellcome Trust","keywords":"Virulence; Biology; Streptococcus suis; Microbiology; Pathogen; Virulence factor; Human pathogen; Immune system; Gene; Virology; Immunology; Genetics","authors":[{"name":"Mariela Segura","is_ca":true},{"name":"Nahuel Fittipaldi","is_ca":true},{"name":"Cynthia Calzas","is_ca":true},{"name":"Marcelo Gottschalk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1873240638355416,"gpt":0.4795665450473223,"spread":0.2922424812117806,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001936921,0.0008290231,0.003090193,0.0007441292,0.0001706157,0.00006796415,0.0004354661,0.001213287,0.001734835],"category_scores_gemma":[0.001167668,0.0005817594,0.0008925144,0.0001961531,0.0006880119,0.00009164358,0.0002201627,0.00109974,0.0004089947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003894183,"about_ca_system_score_gemma":0.0001924787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003649789,"about_ca_topic_score_gemma":0.000486525,"domain_scores_codex":[0.9965616,0.0003485171,0.0009764881,0.00112507,0.00008295753,0.0009053846],"domain_scores_gemma":[0.9968616,0.001025062,0.0003117765,0.001385588,0.0001425832,0.0002734114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003873713,0.001528275,0.01794297,0.004791647,0.0009633851,0.001194022,0.00007599489,7.220847e-8,0.00005546985,0.0008512711,0.003256255,0.9693019],"study_design_scores_gemma":[0.0007055613,0.0005289247,0.003753775,0.009682017,0.002024378,0.0005602791,0.00001755164,3.846552e-7,0.00001140328,0.00013929,0.9820203,0.0005561541],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000297016,0.9903028,0.000005417098,0.0002643924,0.0009676018,0.0007598534,0.001217446,0.0001340771,0.006051398],"genre_scores_gemma":[0.004365379,0.9911207,0.0002013877,0.00009056119,0.0003117018,0.0004183144,0.001688547,0.0001012751,0.001702144],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.978764,"threshold_uncertainty_score":0.9996634,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024236935","doi":"10.1016/j.tim.2007.05.004","title":"Integrons: mobilizable platforms that promote genetic diversity in bacteria","year":2007,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":335,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"National Medical Research Council; National Health and Medical Research Council; Australian Research Council; Macquarie University","keywords":"Biology; Horizontal gene transfer; Genetic diversity; Genetics; Genome; Phylogenetic tree; Gene; Mobile genetic elements; Bacterial genome size; Evolutionary biology; Plasmid; Computational biology; Population","authors":[{"name":"Maurizio Labbate","is_ca":false},{"name":"Jeremy E. Koenig","is_ca":true},{"name":"H. W. Stokes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02016523441554229,"gpt":0.266387400056491,"spread":0.2462221656409487,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004178871,0.0002266748,0.000276415,0.0002504445,0.00005619829,0.00001056744,0.0003926601,0.0003975143,0.0002040475],"category_scores_gemma":[0.00002798171,0.0002088361,0.00007363985,0.0002262483,0.000215756,0.00000720057,0.000484031,0.0001893009,0.00002123017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008721454,"about_ca_system_score_gemma":0.00002826653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001285206,"about_ca_topic_score_gemma":0.003606094,"domain_scores_codex":[0.9984642,0.00004214416,0.0003406416,0.0005291656,0.00003756037,0.00058633],"domain_scores_gemma":[0.9994043,0.00001648823,0.0001020919,0.0003997373,0.00002206652,0.00005532164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002268315,0.00009126935,0.3277977,0.000009843757,0.00001566445,0.00003459074,0.0001186046,0.000007228727,0.6675466,0.00001886321,0.0003353026,0.003797529],"study_design_scores_gemma":[0.001449816,0.0003183815,0.7853158,0.00004486275,0.000009626345,0.0001190016,0.0002116177,0.000007454935,0.2026943,0.0001701123,0.009226618,0.0004324545],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979041,0.0003293727,0.000320767,0.00002461605,0.0002998618,0.0001339482,0.0000285959,0.00001326146,0.0009454621],"genre_scores_gemma":[0.9952881,0.000112699,0.003212826,0.0001113016,0.00006190224,0.000003250063,0.0002691924,0.00002036945,0.0009203836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4648523,"threshold_uncertainty_score":0.851609,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2616666354","doi":"10.1016/j.tim.2017.04.010","title":"At the Nexus of Antibiotics and Metals: The Impact of Cu and Zn on Antibiotic Activity and Resistance","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":319,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Antibiotics; Antibiotic resistance; Antimicrobial; Bacteria; Biology; Microbiology; Zinc; In vivo; Biotechnology; Metal; Resistance (ecology); Chemistry; Ecology; Genetics; Organic chemistry","authors":[{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04820000548031673,"gpt":0.3715520490082497,"spread":0.323352043527933,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005226101,0.0004197469,0.001337418,0.0001171332,0.0001205181,0.00002324714,0.0004121548,0.0005112868,0.000008779662],"category_scores_gemma":[0.0001438125,0.0002210301,0.0002371595,0.0001039531,0.001907851,0.000004416873,0.0004506462,0.0002610829,7.23832e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000030691,"about_ca_system_score_gemma":0.00007114337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007418561,"about_ca_topic_score_gemma":0.0005014251,"domain_scores_codex":[0.9981633,0.0004577354,0.0004683993,0.0005749672,0.00004217543,0.0002934055],"domain_scores_gemma":[0.9978867,0.000207418,0.0008474468,0.0009862402,0.00003506559,0.0000371788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009211435,0.0003167829,0.00704671,0.007476519,0.002116513,0.00002399938,0.0001906761,0.000002388901,0.3482799,0.0003447444,0.002320104,0.6309606],"study_design_scores_gemma":[0.004198804,0.004390211,0.1643842,0.01566954,0.003494217,0.001657885,0.0001443239,0.00001227668,0.0498419,0.000238989,0.7526612,0.003306399],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.3211211,0.6777454,0.000001528328,0.00002822161,0.00007178097,0.0002104395,0.0003453005,0.00000182497,0.0004743696],"genre_scores_gemma":[0.326466,0.6727175,0.00004215034,0.000005789706,0.00003241582,2.900435e-7,0.00008041854,0.00002350901,0.0006319173],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7503411,"threshold_uncertainty_score":0.9013346,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076452367","doi":"10.1016/s0966-842x(01)02132-1","title":"Can bacterial interference prevent infection?","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":311,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Health Research Institute; Western University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Commensalism; Microbiology; Biofilm; Immune system; Flora (microbiology); Host (biology); Bacteria; Virulence; Immunology; Ecology; Gene; Genetics","authors":[{"name":"Gregor Reid","is_ca":true},{"name":"Jeffrey C. Howard","is_ca":true},{"name":"Bing Siang Gan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02160284641964701,"gpt":0.2483499142480244,"spread":0.2267470678283773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009325476,0.0001065873,0.0001389746,0.00003378353,0.0000485606,0.00001636764,0.0001465098,0.0001199849,0.002238463],"category_scores_gemma":[0.000006624061,0.00004342093,0.00005011088,0.0002960417,0.00005515094,0.00002632255,0.00008003967,0.0001235301,0.00002959536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003840761,"about_ca_system_score_gemma":0.000003433692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004138584,"about_ca_topic_score_gemma":0.009994938,"domain_scores_codex":[0.9992389,0.00007275398,0.0001788763,0.0002307638,0.00001547314,0.0002632295],"domain_scores_gemma":[0.9998348,0.00002484744,0.00004519982,0.00004460666,0.00001389438,0.00003660398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004018813,0.0001505813,0.02028571,8.049614e-7,0.000008092973,0.000005763123,0.00003965747,0.000001383583,0.8730315,0.0001545791,0.0005107206,0.105771],"study_design_scores_gemma":[0.0008752941,0.001794206,0.7413915,0.00005172195,0.00001839428,0.0002979335,0.0000537674,0.0000265916,0.0267313,0.001338883,0.2267524,0.0006679805],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961544,0.00002916112,0.000001487083,0.001202488,0.000352509,0.00004781587,0.00004533283,0.00003239791,0.002134441],"genre_scores_gemma":[0.9985384,0.00006676516,0.00002035739,0.0001317214,0.0001317134,0.000007131498,0.0002662397,5.822127e-7,0.0008371213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8463002,"threshold_uncertainty_score":0.9986736,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063876354","doi":"10.1016/j.tim.2009.08.007","title":"Can filamentous fungi form biofilms?","year":2009,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":283,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture Food and Rural Development; Petro Geotech (Canada)","funders":"","keywords":"Biofilm; Biology; Virulence; Microbiology; Microorganism; Yeast; Bacteria; Microbial ecology; Ecology; Genetics; Gene","authors":[{"name":"Michael W. Harding","is_ca":true},{"name":"Lyriam L. R. Marques","is_ca":false},{"name":"R. J. Howard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0236578156313253,"gpt":0.296989055731902,"spread":0.2733312401005767,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001784902,0.0006199799,0.00137213,0.0003931751,0.00005762593,0.00003017951,0.0004027757,0.001303852,0.0001381381],"category_scores_gemma":[0.0000157586,0.000522786,0.0005073082,0.0003158264,0.0001230854,0.00000200278,0.0001906124,0.0003635871,0.00004469446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008188535,"about_ca_system_score_gemma":0.000129981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004400608,"about_ca_topic_score_gemma":0.000399149,"domain_scores_codex":[0.9975096,0.0001853754,0.0006943715,0.0008465108,0.00003303988,0.0007311268],"domain_scores_gemma":[0.9989358,0.00001629795,0.0003087573,0.0006263099,0.00002623069,0.00008659152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001501663,0.00004626928,0.000001710616,0.0002306722,0.0000734061,0.00001985304,0.000009559783,9.850196e-8,0.1590134,0.00002057182,0.005210868,0.8353586],"study_design_scores_gemma":[0.0002965952,0.0003071263,0.000009498664,0.0006443411,0.000122834,0.0003935928,0.000003851336,1.030234e-7,0.001871079,0.000004575997,0.995777,0.0005694464],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001023043,0.9961733,5.89247e-7,0.00005117506,0.0006057568,0.0002128091,0.0004634787,0.00002306352,0.001446736],"genre_scores_gemma":[0.0004248447,0.98685,0.0003433668,0.0002425005,0.0004954344,0.00001615549,0.008927356,0.00006322908,0.002637161],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9905661,"threshold_uncertainty_score":0.9999927,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016965453","doi":"10.1016/j.tim.2012.10.001","title":"Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":275,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children; Canada Research Chairs","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Biology; Biochemistry; Bacterial outer membrane; Porin; Secretion; ATP synthase; Tetratricopeptide; Context (archaeology); Biofilm; Cell biology; Bacteria; Enzyme; Escherichia coli","authors":[{"name":"John C. Whitney","is_ca":true},{"name":"P. Lynne Howell","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03447592272953127,"gpt":0.3053334090015534,"spread":0.2708574862720221,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004220807,0.0006044098,0.001363004,0.0005078334,0.00003973802,0.00002570457,0.0003269376,0.001367998,0.0003088868],"category_scores_gemma":[0.00004243242,0.000537473,0.000327913,0.0003137461,0.0001583917,0.000006922265,0.0002744048,0.0004904532,0.00007390491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001332042,"about_ca_system_score_gemma":0.0001006597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001712913,"about_ca_topic_score_gemma":0.001140538,"domain_scores_codex":[0.9969698,0.0005813274,0.0008328108,0.0008247726,0.00003911911,0.0007521869],"domain_scores_gemma":[0.9989423,0.00004431616,0.0003849343,0.000514394,0.00002680719,0.00008720601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005530984,0.0001004904,0.00003226851,0.0004151548,0.00007916961,0.00001869661,0.0000378842,2.270433e-7,0.4762234,0.00001815252,0.00015359,0.5228657],"study_design_scores_gemma":[0.0005934847,0.0001638421,0.00007907286,0.001185361,0.000175633,0.0003334474,0.00001999875,3.090005e-7,0.01073769,0.00000522165,0.9859056,0.0008002625],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.025548,0.9718634,0.000004280329,0.00002362558,0.001377893,0.0003352894,0.000439108,0.00002032184,0.0003880975],"genre_scores_gemma":[0.009929551,0.9837328,0.000380741,0.00006117523,0.0005940815,0.00005915697,0.004540131,0.00009276455,0.0006096581],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9857521,"threshold_uncertainty_score":0.9999284,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2747926456","doi":"10.1016/j.tim.2017.07.008","title":"Women and Their Microbes: The Unexpected Friendship","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":253,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Lawson Health Research Institute; McMaster University","funders":"","keywords":"Microbiome; Biology; Dysbiosis; Reproductive health; Physiology; Bacterial vaginosis; Infertility; Pregnancy; Immunology; Bioinformatics; Medicine; Genetics; Environmental health; Microbiology; Population","authors":[{"name":"Jessica A. Younes","is_ca":false},{"name":"Elke Lievens","is_ca":false},{"name":"Ruben Hummelen","is_ca":true},{"name":"Rebecca van der Westen","is_ca":false},{"name":"Gregor Reid","is_ca":true},{"name":"Mariya Petrova","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1071056079216718,"gpt":0.3758257605780839,"spread":0.268720152656412,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004421384,0.0004946253,0.001743862,0.0008112419,0.0001670127,0.00003662305,0.000405791,0.0004335404,0.0004310727],"category_scores_gemma":[0.00005712477,0.0002741564,0.0002600875,0.0003451111,0.0004302052,0.00003476592,0.0003150743,0.0008395213,0.00009644175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003235613,"about_ca_system_score_gemma":0.00008652825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003084101,"about_ca_topic_score_gemma":0.00005873701,"domain_scores_codex":[0.9980388,0.0003047548,0.0005427944,0.0005621021,0.00002466351,0.0005269343],"domain_scores_gemma":[0.9982069,0.0002147575,0.0003594186,0.001127295,0.00002417811,0.00006745676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000188599,0.0003734155,0.00004672186,0.00168582,0.0004404485,0.0000604961,0.0004845872,4.436872e-8,0.0000372224,0.0001072839,0.001889323,0.9948558],"study_design_scores_gemma":[0.0004771641,0.0004611593,0.0001402205,0.001483315,0.0002377661,0.00164289,0.00008234912,2.270381e-7,0.000001978677,0.00003693887,0.995199,0.0002370416],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008025806,0.9883389,0.00000213284,0.0002623338,0.0003550346,0.0004750921,0.00007923482,0.00006255384,0.009622108],"genre_scores_gemma":[0.0008177059,0.9923639,0.00004288876,0.0001178503,0.0001581009,0.0002836623,0.0004150989,0.00005387227,0.005746934],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9946187,"threshold_uncertainty_score":0.999971,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057158058","doi":"10.1016/j.tim.2012.02.004","title":"Stress responses as determinants of antimicrobial resistance in Gram-negative bacteria","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Antimicrobial; Bacteria; Microbiology; Antibiotic resistance; Gram-negative bacteria; Cell envelope; Biofilm; Pathogenic bacteria; Genetics; Gene; Escherichia coli","authors":[{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03254250514805685,"gpt":0.326062177853696,"spread":0.2935196727056391,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003518955,0.0005330522,0.001693119,0.0004952659,0.00003166579,0.00001347151,0.0003955751,0.001103648,0.00007441104],"category_scores_gemma":[0.00008974202,0.0004778861,0.0003105076,0.00036153,0.0003267255,0.000006268233,0.0002680018,0.0003166661,0.00001596579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005728533,"about_ca_system_score_gemma":0.0001756176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001221908,"about_ca_topic_score_gemma":0.003850486,"domain_scores_codex":[0.9968566,0.0007506284,0.001024693,0.0006922274,0.00003349177,0.0006423544],"domain_scores_gemma":[0.998653,0.00008151908,0.0006167621,0.0005469187,0.00004345052,0.00005836363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006738143,0.0002212637,0.0005698168,0.002349217,0.00009225889,0.0000463511,0.0001101517,8.364945e-8,0.7023532,0.00001381048,0.0003025106,0.2932675],"study_design_scores_gemma":[0.0008759327,0.0002006844,0.0007652118,0.005336545,0.0001644178,0.00019058,0.00001557821,3.173043e-8,0.09691016,0.000003643613,0.8947122,0.0008250106],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.3017755,0.6959143,1.911071e-7,0.000009801651,0.0006210266,0.0002386845,0.001176822,0.000006693077,0.0002569108],"genre_scores_gemma":[0.02959331,0.9660039,0.0009201106,0.00003733483,0.0002662979,0.0000218993,0.001749058,0.00008095073,0.001327124],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8944097,"threshold_uncertainty_score":0.9997673,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152822134","doi":"10.1016/j.tim.2007.08.001","title":"The ecology of Ebola virus","year":2007,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Public Health Agency of Canada","keywords":"Ebola virus; Biology; Threatened species; Virus; Ebolavirus; Evolutionary biology; Ecology; Outbreak; Evolutionary ecology; Virology; Host (biology)","authors":[{"name":"Allison Groseth","is_ca":true},{"name":"Heinz Feldmann","is_ca":true},{"name":"James E. Strong","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1083893135609846,"gpt":0.4633807008325727,"spread":0.3549913872715881,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006992648,0.0002232074,0.001411612,0.0008358617,0.00006066648,0.000004311432,0.0002056031,0.0006467451,0.0004688966],"category_scores_gemma":[0.00005989595,0.0001246118,0.0004037969,0.0007140223,0.0004624672,0.000008019329,0.0001279103,0.0008403533,0.0001361598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001509917,"about_ca_system_score_gemma":0.0001810708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001112511,"about_ca_topic_score_gemma":0.001044449,"domain_scores_codex":[0.9982484,0.0002817054,0.0006961561,0.0002769862,0.0000366522,0.0004600807],"domain_scores_gemma":[0.9988527,0.0004907848,0.0001871777,0.0003665027,0.00005532763,0.00004751826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002806298,0.00008709348,0.00002066484,0.0007767478,0.0001207729,0.00003677454,0.000009033207,4.463115e-8,0.0005406121,0.0001689293,0.002542564,0.9956687],"study_design_scores_gemma":[0.0003045306,0.0003129605,0.00007315067,0.0006077949,0.0001481504,0.0007325651,0.000004935326,3.133005e-7,0.00008949083,0.000008003835,0.9976241,0.000093976],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001091107,0.9911127,0.000002632096,0.00005685063,0.0003450497,0.0002342107,0.00005576502,0.00001327608,0.008070378],"genre_scores_gemma":[0.00008800092,0.9922406,0.00004422058,0.00004035585,0.0001196975,0.00003483453,0.0002165767,0.00002505468,0.007190681],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9955747,"threshold_uncertainty_score":0.5134089,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963537078","doi":"10.1016/j.tim.2012.04.007","title":"The archaellum: an old motility structure with a new name","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft","keywords":"Flagellum; Archaea; Biology; Pilus; Confusion; Bacteria; Cilium; Microbiology; Evolutionary biology; Cell biology; Genetics; Gene; Escherichia coli","authors":[{"name":"Ken F. Jarrell","is_ca":true},{"name":"Sonja‐Verena Albers","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01130556312235439,"gpt":0.2418199500239054,"spread":0.230514386901551,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001352619,0.0001299145,0.0001119509,0.00003365023,0.0000953344,0.000008342893,0.0002893565,0.0001782205,0.00009789297],"category_scores_gemma":[0.000009858203,0.00008758112,0.00003298152,0.00008359358,0.0002260428,0.000004332088,0.0001195603,0.0001517264,0.000007478877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001319328,"about_ca_system_score_gemma":0.0000293993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001131847,"about_ca_topic_score_gemma":0.001500343,"domain_scores_codex":[0.9991547,0.000106739,0.0001007684,0.0002340757,0.00002324117,0.0003804257],"domain_scores_gemma":[0.9994857,0.00001047874,0.00004334644,0.0003575807,0.00001586672,0.00008707945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003139815,0.00007767467,0.3799263,0.000004163534,0.00005604167,0.000002217613,0.000420955,0.00001451847,0.5999289,0.0003473809,0.002331941,0.01657588],"study_design_scores_gemma":[0.001836465,0.00101809,0.6797807,0.000008058178,0.00003563221,0.0002999493,0.0001867836,0.000004754036,0.1853119,0.000514065,0.1305195,0.0004841116],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982795,0.0009069244,0.00006392538,0.0001690039,0.0001369443,0.00006521331,0.00008210252,0.000007212978,0.000289143],"genre_scores_gemma":[0.9972751,0.00003034008,0.0004379421,0.0002405651,0.0001863423,0.000002307633,0.000337347,0.000008416766,0.001481635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.414617,"threshold_uncertainty_score":0.3571455,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054353316","doi":"10.1016/j.tim.2006.12.001","title":"Importance of widespread gene transfer agent genes in α-proteobacteria","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Memorial University of Newfoundland","funders":"","keywords":"Biology; Prophage; Genetics; Gene; Rhodobacter; Genome; Bacteriophage; Proteobacteria; Horizontal gene transfer; Gene cluster; ENCODE; Computational biology; Escherichia coli","authors":[{"name":"Andrew S. Lang","is_ca":true},{"name":"J. Thomas Beatty","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03403018052030121,"gpt":0.3095577838413827,"spread":0.2755276033210814,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001727774,0.0004121768,0.001358481,0.0003097474,0.00002548,0.000008897948,0.0004221224,0.0003977865,0.004022468],"category_scores_gemma":[0.000004458593,0.0003575308,0.000344138,0.0005481733,0.0002348649,0.00007177528,0.0001457507,0.0003622586,0.0001542646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003613135,"about_ca_system_score_gemma":0.00001920317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001334774,"about_ca_topic_score_gemma":0.01208678,"domain_scores_codex":[0.9976298,0.0002083592,0.001080943,0.0006107227,0.00003084866,0.0004393554],"domain_scores_gemma":[0.9992949,0.00004871046,0.0002151763,0.0004010719,0.000004187305,0.00003598665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001188543,0.0001953755,0.0004365001,0.0004112308,0.0000282987,0.00004306042,0.00004470153,0.00001079768,0.2418952,0.000003172308,0.0006452039,0.7562746],"study_design_scores_gemma":[0.0002395519,0.0000510603,0.003303172,0.0007731984,0.00007408563,0.0001586399,0.000001982252,3.439249e-7,0.001758044,0.000003308978,0.9932839,0.0003527105],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0605441,0.9360054,0.00001359463,0.00002184936,0.0005860041,0.0004859753,0.0006681561,0.00002109884,0.001653802],"genre_scores_gemma":[0.001860062,0.994782,0.0005916063,0.00003119493,0.00004875567,0.0001063258,0.001070503,0.00004958078,0.001459989],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9926387,"threshold_uncertainty_score":0.9998876,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031757246","doi":"10.1016/j.tim.2006.09.006","title":"Microbial rhodopsins: functional versatility and genetic mobility","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":213,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Horizontal gene transfer; Phylogenetic tree; Rhodopsin; Evolutionary biology; Phylogenetics; Three-domain system; Genetics; Gene; Computational biology; Genome; Botany","authors":[{"name":"Adrian K. Sharma","is_ca":true},{"name":"John L. Spudich","is_ca":false},{"name":"W. Ford Doolittle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1286737513487959,"gpt":0.3788055494300179,"spread":0.250131798081222,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002819633,0.0004773669,0.001218987,0.0006403156,0.0001056384,0.00004156334,0.000468374,0.0006188316,0.0008105939],"category_scores_gemma":[0.0001365453,0.0004164272,0.0002812586,0.0006961161,0.0008406268,0.00003377665,0.0003685294,0.0007567591,0.0001090799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002670227,"about_ca_system_score_gemma":0.0001880611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008941554,"about_ca_topic_score_gemma":0.0001946884,"domain_scores_codex":[0.9961966,0.001036371,0.0007190856,0.001288286,0.00009196765,0.0006677319],"domain_scores_gemma":[0.9986798,0.0005173602,0.0001691457,0.0005152896,0.00002626915,0.00009220248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004363033,0.0002881382,0.0001520162,0.00150122,0.00001819715,0.00004488626,0.00002454326,0.000003387085,0.05266142,0.00002068191,0.003258575,0.9419833],"study_design_scores_gemma":[0.0004083039,0.00008071958,0.0005640181,0.0002243836,0.0000546343,0.0003659485,0.000001081984,0.000006429183,0.00158433,0.00004076431,0.9962778,0.0003915657],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008359023,0.9883659,0.00001258372,0.00001286776,0.0006893657,0.0004389287,0.001016506,0.00004306248,0.001061771],"genre_scores_gemma":[0.001190422,0.9968408,0.0002369437,0.00004995868,0.0001566173,0.00008171461,0.0004188008,0.00004461007,0.0009801106],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9930192,"threshold_uncertainty_score":0.9998288,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078785469","doi":"10.1016/j.tim.2014.02.006","title":"Ordering microbial diversity into ecologically and genetically cohesive units","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Institute of Environmental Health Sciences; Scheme for Promotion of Academic and Research Collaboration; Canada Research Chairs; Natural Sciences and Engineering Research Council of Canada; Broad Institute; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Biology; Gene flow; Selection (genetic algorithm); Evolutionary biology; Genetic diversity; Genome; Genomics; Gene; Ecological genetics; Ecology; Natural selection; Genetics; Genetic variation; Population","authors":[{"name":"B. Jesse Shapiro","is_ca":true},{"name":"Martin F. Polz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02249891219331489,"gpt":0.2919987459539954,"spread":0.2694998337606805,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002607395,0.0004646477,0.001078739,0.0002589757,0.0001436271,0.00001671445,0.0004762507,0.001120531,0.00007487064],"category_scores_gemma":[0.00009894494,0.0004215784,0.0001778204,0.0002862346,0.0004137226,0.000001401133,0.001545313,0.0003488084,0.00002711509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005940997,"about_ca_system_score_gemma":0.0001085619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002489783,"about_ca_topic_score_gemma":0.0008825218,"domain_scores_codex":[0.9977672,0.000406933,0.0005137352,0.0008242684,0.00003442791,0.0004534798],"domain_scores_gemma":[0.9991689,0.0000507522,0.0002119412,0.0003835048,0.00007942647,0.0001055168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005041999,0.000105551,0.0003284836,0.001410388,0.0002545772,0.00002323495,0.00007317028,0.00003926013,0.008658145,0.0002127836,0.003417023,0.985427],"study_design_scores_gemma":[0.000480273,0.0003344856,0.0001253076,0.0002039218,0.0001518178,0.0001943487,0.000007961288,0.00001072668,0.00002558642,0.00003661605,0.9979104,0.0005185444],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00423166,0.9939855,0.0004222739,0.00004224073,0.0003031013,0.0002544687,0.0001190609,0.00002101596,0.0006206915],"genre_scores_gemma":[0.001732414,0.9934067,0.001553322,0.0002344195,0.0001546024,0.00001919091,0.001972739,0.00003949369,0.0008871685],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9944934,"threshold_uncertainty_score":0.9998236,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1969350272","doi":"10.1016/j.tim.2011.05.003","title":"Biosensors and their applications in microbial metabolic engineering","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":192,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biology; Metabolic engineering; Metabolic pathway; Biochemical engineering; Computational biology; Biosensor; Microbial metabolism; Synthetic biology; Biotechnology; Gene; Biochemistry; Bacteria; Engineering; Genetics","authors":[{"name":"Fuzhong Zhang","is_ca":false},{"name":"Jay D. Keasling","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01774320511405564,"gpt":0.2602952168193379,"spread":0.2425520117052823,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002061225,0.000491622,0.001054295,0.0007403307,0.00002245309,0.00001006495,0.0002574587,0.0006788982,0.0000159744],"category_scores_gemma":[0.00002114233,0.0003991254,0.000195439,0.0005011427,0.00008854228,0.000002850468,0.0001471774,0.0003581846,0.00000858962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002153273,"about_ca_system_score_gemma":0.00003503895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003874336,"about_ca_topic_score_gemma":0.0000965823,"domain_scores_codex":[0.9982487,0.0001003815,0.0005152298,0.0007257551,0.00001060523,0.0003993055],"domain_scores_gemma":[0.9993772,0.00000904906,0.0001273815,0.0004215504,0.00001685398,0.00004799024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009155713,0.0000883679,0.0000158015,0.0008693374,0.0001147638,0.000001570983,0.0000721031,0.000008051205,0.3306864,0.0001735765,0.0001788286,0.667782],"study_design_scores_gemma":[0.0002058784,0.00002868923,0.00002530677,0.0002726762,0.00005513786,0.0001722425,0.000005973988,5.048092e-7,0.004892639,0.000002136823,0.9939467,0.0003921673],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004774706,0.9944078,0.00005149856,0.000004818573,0.0002762346,0.0002806743,0.0001349171,0.00002243386,0.00004697091],"genre_scores_gemma":[0.001425331,0.996158,0.0004374703,0.00001114637,0.0003234807,0.0001046311,0.001153941,0.00006239354,0.0003235724],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9937678,"threshold_uncertainty_score":0.999846,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070622846","doi":"10.1016/s0966-842x(03)00079-9","title":"Campylobacter – a tale of two protein glycosylation systems","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":189,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Biology; Glycosylation; Campylobacter; Glycoprotein; Bacteria; Microbiology; Glycan; N-linked glycosylation; Gene; Biochemistry; Genetics","authors":[{"name":"Christine M. Szymanski","is_ca":true},{"name":"Susan M. Logan","is_ca":true},{"name":"Dennis Linton","is_ca":false},{"name":"Brendan W. Wren","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06028447292919294,"gpt":0.3182139479066157,"spread":0.2579294749774228,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006025973,0.0004641202,0.002231332,0.000136051,0.00004043402,0.00001331775,0.0004500264,0.0007857623,0.000631007],"category_scores_gemma":[0.00003652488,0.0001778911,0.0004533132,0.000815172,0.0001537988,0.00003938841,0.00009004032,0.000379618,0.0000860856],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001028807,"about_ca_system_score_gemma":0.00002460786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004812909,"about_ca_topic_score_gemma":0.0005846224,"domain_scores_codex":[0.9961707,0.001385309,0.001184976,0.0006696519,0.00004719253,0.0005421499],"domain_scores_gemma":[0.9986383,0.0003193639,0.0007646941,0.0001713091,0.00004506005,0.00006126356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001185588,0.0001025429,0.0003235879,0.000692827,0.00006392921,0.000010517,0.00001205306,0.000001209584,0.01089831,0.0003357987,0.0003506451,0.9871967],"study_design_scores_gemma":[0.0001698367,0.0001727115,0.000151806,0.001231435,0.00008498602,0.0001867842,0.000007819869,7.664742e-7,0.00001961507,0.00006605394,0.9975495,0.0003587253],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02430367,0.973277,0.000001312713,0.00001894405,0.0004545639,0.0005306489,0.0003944425,0.00003295673,0.0009864914],"genre_scores_gemma":[0.00331048,0.9909235,0.0000899932,0.00004070589,0.0002845722,0.0002284659,0.003199108,0.000006891949,0.001916289],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9971988,"threshold_uncertainty_score":0.7254187,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990289269","doi":"10.1016/j.tim.2004.11.009","title":"Quorum sensing in streptococcal biofilm formation","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":187,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Biofilm; Quorum sensing; Bacteria; Biology; Microbiology; Streptococcus gordonii; Genetics","authors":[{"name":"Prashanth Suntharalingam","is_ca":true},{"name":"Dennis G. Cvitkovitch","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02583161216235663,"gpt":0.3050591350667815,"spread":0.2792275229044249,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002533347,0.000498772,0.001122525,0.0006006038,0.00004006491,0.0000257268,0.0002182319,0.001255275,0.00003931164],"category_scores_gemma":[0.00002677573,0.0004517985,0.0003216297,0.0004187161,0.0001248653,0.000006048883,0.0001973959,0.0004223568,0.00003912767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001728364,"about_ca_system_score_gemma":0.0001579112,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008053771,"about_ca_topic_score_gemma":0.0009370418,"domain_scores_codex":[0.9975144,0.0002842451,0.0008586437,0.0006808435,0.00003022947,0.000631648],"domain_scores_gemma":[0.9991754,0.00001783055,0.0003040789,0.0004277949,0.00002292333,0.00005201622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000235856,0.00004618054,0.000006837879,0.0008252723,0.00003079856,0.00002923694,0.00002367882,0.000003694227,0.1465311,0.00002061492,0.0002819198,0.8521771],"study_design_scores_gemma":[0.0006384628,0.0001493018,0.00001238603,0.002932115,0.00005171671,0.0004622445,0.00001549381,0.000001853687,0.003791327,0.000005407202,0.9913785,0.0005611209],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006297931,0.9919394,0.00001442869,0.00004860144,0.0006309758,0.0003588341,0.0001692679,0.0000204867,0.0005200966],"genre_scores_gemma":[0.001914108,0.9898599,0.0009362196,0.00006544221,0.0002804619,0.00001163348,0.006614537,0.00006693178,0.0002507794],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9910967,"threshold_uncertainty_score":0.9997934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167458075","doi":"10.1016/j.tim.2004.02.007","title":"Gene duplication and biased functional retention of paralogs in bacterial genomes","year":2004,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Cancer Society Research Institute; McGill University","keywords":"Gene duplication; Biology; Genome; Gene; Operon; Genetics; Adaptation (eye); Tandem exon duplication; Bacterial genome size; Functional divergence; Evolutionary biology; Computational biology; Genome evolution; Gene family","authors":[{"name":"Dirk Gevers","is_ca":false},{"name":"Klaas Vandepoele","is_ca":false},{"name":"Cédric Simillion","is_ca":false},{"name":"Yves Van de Peer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01878106308114141,"gpt":0.2360591988247896,"spread":0.2172781357436482,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009663826,0.00008040619,0.0001330397,0.0001059214,0.00001505654,0.000002136916,0.00004520795,0.0001127379,0.00001421215],"category_scores_gemma":[0.000007940972,0.00008125758,0.0000295783,0.00007810899,0.00009290948,5.463497e-7,0.00004890909,0.00003514028,0.000001117777],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000140138,"about_ca_system_score_gemma":0.00001656177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000467461,"about_ca_topic_score_gemma":0.0002732949,"domain_scores_codex":[0.9994073,0.00002857991,0.0002037619,0.0002275288,0.00001079767,0.0001220342],"domain_scores_gemma":[0.9998038,0.000004951214,0.00006240243,0.0000983253,0.0000173804,0.0000131696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008837403,0.00004017766,0.02165312,0.000003703148,0.00001471712,4.969237e-7,0.00003830498,0.0001058884,0.9756714,0.00006708732,0.00002325372,0.002293478],"study_design_scores_gemma":[0.002050394,0.0002609704,0.5972434,0.000005750028,0.000007381709,0.00002783025,0.00002203093,0.000002937203,0.3979175,0.0004767298,0.001848158,0.0001369015],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981219,0.001416179,0.00005702174,0.0001208527,0.0001075823,0.00005182431,0.00004400669,0.000001043687,0.00007962701],"genre_scores_gemma":[0.998393,0.0003834652,0.0006542311,0.00003141042,0.00005129101,0.00001237816,0.0004239727,0.000005641777,0.00004461417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5777539,"threshold_uncertainty_score":0.3313588,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151049971","doi":"10.1016/j.tim.2004.07.003","title":"Antibiotic-induced lateral transfer of antibiotic resistance","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Antibiotic resistance; Antibiotics; Microbiology","authors":[{"name":"Philip A. Hastings","is_ca":false},{"name":"Susan M. Rosenberg","is_ca":false},{"name":"Andrew Slack","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02574500636329829,"gpt":0.3099550105532683,"spread":0.28421000418997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002928541,0.0007512577,0.002252554,0.0005017082,0.00004143118,0.00001703709,0.0008086888,0.001484394,0.00007903305],"category_scores_gemma":[0.00003775559,0.0006655726,0.0006749686,0.0005496736,0.000402574,0.00000519485,0.0001493106,0.0004507125,0.00003106583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001148572,"about_ca_system_score_gemma":0.0003161214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002479831,"about_ca_topic_score_gemma":0.0003378042,"domain_scores_codex":[0.9964374,0.0003684112,0.00129452,0.00111096,0.0000717729,0.0007169471],"domain_scores_gemma":[0.9984701,0.0000350559,0.0003462202,0.001012213,0.00006182637,0.00007457037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005209126,0.001029773,0.0009316705,0.03738064,0.001379056,0.0002565349,0.0001577588,0.000005353337,0.5780236,0.001116878,0.00190921,0.3772886],"study_design_scores_gemma":[0.001686864,0.0005574662,0.0005870051,0.01739655,0.0005102911,0.0002604265,0.00001421098,1.131258e-7,0.02590126,0.00002636694,0.9515001,0.001559344],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02585483,0.9714321,0.00002487304,0.00001924835,0.0006150525,0.0003781519,0.0004392348,0.00002045369,0.001215987],"genre_scores_gemma":[0.05760299,0.9376722,0.0006179785,0.0000256264,0.0001581668,0.000003570389,0.001969823,0.0001231535,0.001826505],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9495909,"threshold_uncertainty_score":0.9998119,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113147052","doi":"10.1016/j.tim.2011.07.008","title":"Non-indigenous microorganisms in the Antarctic: assessing the risks","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":171,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Scientific Committee on Antarctic Research; Natural Environment Research Council; Sight Research UK","keywords":"Megafauna; Ecosystem; Biology; Disturbance (geology); Indigenous; Ecology; Contamination; Microorganism; Environmental protection; Environmental science; Pleistocene; Bacteria","authors":[{"name":"Don A. Cowan","is_ca":false},{"name":"Steven L. Chown","is_ca":false},{"name":"Peter Convey","is_ca":false},{"name":"Marla Tuffin","is_ca":false},{"name":"Kevin A. Hughes","is_ca":false},{"name":"Stephen B. Pointing","is_ca":false},{"name":"Warwick F. Vincent","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09243777101883936,"gpt":0.3887429338594542,"spread":0.2963051628406149,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001641763,0.0003637912,0.0008641817,0.0002428533,0.0002109868,0.00004687359,0.001864875,0.000492923,0.003159558],"category_scores_gemma":[0.00003584455,0.0001873523,0.0002082601,0.000811047,0.0007234309,0.00007565304,0.000567861,0.001432423,0.00170829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004298278,"about_ca_system_score_gemma":0.00007913318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003999381,"about_ca_topic_score_gemma":0.01070088,"domain_scores_codex":[0.9966538,0.001155635,0.0005290051,0.0005548157,0.00005787134,0.001048889],"domain_scores_gemma":[0.998735,0.0003410416,0.0002127979,0.0006597757,0.000002839798,0.00004852319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000374879,0.0001615324,0.003618241,0.0001359144,0.00003136598,0.0001155,0.001739822,8.299188e-7,0.0003184269,0.000006440089,0.002024289,0.9918439],"study_design_scores_gemma":[0.0001659867,0.00009197204,0.007746557,0.0001660842,0.00005165086,0.0007068345,0.00009077129,5.609296e-7,0.00001072127,0.00006691645,0.9906554,0.0002465217],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008800085,0.9824666,0.000005473114,0.0001225684,0.0003146303,0.0006796443,0.00005175705,0.00001522438,0.007544016],"genre_scores_gemma":[0.004634873,0.9940513,0.000123749,0.0003267634,0.00006735502,0.0001069135,0.0001646809,0.00003947664,0.0004848884],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9915974,"threshold_uncertainty_score":0.999069,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028046041","doi":"10.1016/j.tim.2006.05.005","title":"Foundations of antibiotic resistance in bacterial physiology: the mycobacterial paradigm","year":2006,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Antibiotics; Mycobacterium tuberculosis; Biology; Antibiotic resistance; Tuberculosis; Cell envelope; Microbiology; Gene; Genetics; Medicine; Escherichia coli","authors":[{"name":"Liem Nguyen","is_ca":true},{"name":"Charles J. Thompson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01858251346595077,"gpt":0.2984941719090846,"spread":0.2799116584431339,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002441337,0.000135587,0.0004052952,0.0003186535,0.00003382041,0.000008801571,0.0001629818,0.0001523633,0.000778964],"category_scores_gemma":[0.00008160216,0.00009648365,0.00008098425,0.000480956,0.0003564559,0.00004174488,0.00005460354,0.0002064184,0.00002696382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007535148,"about_ca_system_score_gemma":0.00008165083,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005398116,"about_ca_topic_score_gemma":0.005277163,"domain_scores_codex":[0.9986377,0.0002248625,0.0004270708,0.0002746415,0.00004271018,0.0003930485],"domain_scores_gemma":[0.9992755,0.0002321351,0.0001007656,0.0003319846,0.00002856211,0.00003103461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000963153,0.0002930546,0.05802562,0.00003468529,0.00001652325,0.00001574041,0.00006613011,0.000001609287,0.9346983,0.001514372,0.004020344,0.0003504059],"study_design_scores_gemma":[0.002423322,0.0001695543,0.9600335,0.00006952621,0.0000167358,0.00002033964,0.00001219185,0.000002060046,0.02055245,0.0005752515,0.01602457,0.0001005427],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946845,0.0001696944,0.000001671542,0.001716472,0.0003269984,0.0001666839,0.0001054456,0.00001307328,0.00281551],"genre_scores_gemma":[0.9981731,0.0000607656,0.0002330633,0.00008362725,0.0002830057,0.00001582159,0.0007107037,0.00001111329,0.0004287822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9141459,"threshold_uncertainty_score":0.8529109,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2952411272","doi":"10.1016/j.tim.2019.05.007","title":"RNA-Targeted Antiviral Immunity: More Than Just RNA Silencing","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":157,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Chinese Academy of Agricultural Sciences; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; American Association of Family and Consumer Sciences","keywords":"Biology; RNA; RNA silencing; Immunity; Trans-acting siRNA; RNA-induced transcriptional silencing; Gene silencing; RNA-induced silencing complex; RNA interference; Virology; Computational biology; Genetics; Immune system; Gene","authors":[{"name":"Fangfang Li","is_ca":false},{"name":"Aiming Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1214385084051479,"gpt":0.356814710766081,"spread":0.2353762023609331,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000506463,0.000614779,0.002153843,0.0002210711,0.0001934893,0.00004332174,0.001118572,0.0006861965,0.0004910805],"category_scores_gemma":[0.0000963905,0.0002239033,0.0005342236,0.001162766,0.0002923216,0.00007984227,0.0007381033,0.001131422,0.000446298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001620453,"about_ca_system_score_gemma":0.00004177603,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005658398,"about_ca_topic_score_gemma":0.001369078,"domain_scores_codex":[0.996666,0.0007904122,0.0006683216,0.0007533091,0.0001056372,0.001016339],"domain_scores_gemma":[0.9986123,0.0007558212,0.000322003,0.0001999076,0.00004441619,0.00006548116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001160991,0.00005719522,0.00002176789,0.0005176255,0.0001127667,0.0000384881,0.00006336393,1.26828e-7,0.1050586,0.000004739738,0.003301234,0.8908125],"study_design_scores_gemma":[0.0001445953,0.0002025918,0.0004067782,0.001954442,0.000117616,0.0000595099,0.0001530226,0.000001247113,0.0004901994,0.000005070787,0.9958444,0.0006204878],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01996334,0.974426,3.914986e-8,0.0001209994,0.0003797202,0.0003375899,0.003123114,0.00007525619,0.001573902],"genre_scores_gemma":[0.002008284,0.9902724,0.00001770606,0.00005486975,0.0002331543,0.00004707312,0.004887034,0.000005082467,0.002474367],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9925432,"threshold_uncertainty_score":0.9130512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3005809379","doi":"10.1016/j.tim.2020.01.003","title":"Contact-Dependent Interbacterial Antagonism Mediated by Protein Secretion Machines","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antagonism; Biology; Cell envelope; Effector; Secretion; Bacteria; Bacteriocin; Microbiology; Competition (biology); Bacterial protein; Cell biology; Biochemistry; Genetics; Escherichia coli; Ecology; Receptor; Gene","authors":[{"name":"Timothy A. Klein","is_ca":true},{"name":"Shehryar Ahmad","is_ca":true},{"name":"John C. Whitney","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02041212960314923,"gpt":0.320021640368541,"spread":0.2996095107653918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002446062,0.0006652646,0.001668124,0.0002466424,0.00005662739,0.00004030692,0.0006204881,0.0009087418,0.000227377],"category_scores_gemma":[0.0001589927,0.0005480563,0.0003443809,0.0002349506,0.0001785625,0.000004604133,0.0007401399,0.0005695865,0.00008977027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001316914,"about_ca_system_score_gemma":0.0001669382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005197501,"about_ca_topic_score_gemma":0.0001457802,"domain_scores_codex":[0.9967547,0.0007792899,0.0007799541,0.001002748,0.00006923566,0.0006140546],"domain_scores_gemma":[0.9990306,0.0000344769,0.0003521181,0.000424497,0.00004547781,0.0001128027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001355067,0.00005773201,0.000006478625,0.000732805,0.0002865184,0.00003121254,0.00002065397,1.292845e-8,0.7558265,0.000003422363,0.004605385,0.2382938],"study_design_scores_gemma":[0.000815396,0.0005577067,0.000004806102,0.0005277001,0.00007566498,0.00009176332,0.000005459784,5.618789e-7,0.007208074,0.000001990517,0.99022,0.0004908553],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003254274,0.9915296,0.00001433148,0.0001685935,0.0005590926,0.0007115064,0.003520702,0.00003634075,0.0002055339],"genre_scores_gemma":[0.00107854,0.9618631,0.00005438016,0.00006316526,0.0005020147,0.000318046,0.03514989,0.00008684726,0.0008839969],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9856147,"threshold_uncertainty_score":0.9996971,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2256712157","doi":"10.1016/j.tim.2015.10.012","title":"Household Transmission of Influenza Virus","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Transmission (telecommunications); Pandemic; Environmental health; Influenza A virus; Psychological intervention; Risk of infection; Public health; Biology; Hygiene; Airborne transmission; Herd immunity; Vaccination; Virology; Medicine; Virus; Disease; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","authors":[{"name":"Tim K. Tsang","is_ca":false},{"name":"Lincoln Lau","is_ca":true},{"name":"Simon Cauchemez","is_ca":false},{"name":"Benjamin J. Cowling","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2761191617067933,"gpt":0.4695332568404848,"spread":0.1934140951336915,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006735543,0.0004999607,0.003626137,0.001546192,0.00002702748,0.000003834367,0.0003311398,0.0008220288,0.0002632485],"category_scores_gemma":[0.00009795337,0.0003485819,0.0005281262,0.0009193126,0.0004267793,0.00002885654,0.0001815329,0.0009808703,0.00008129846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003117467,"about_ca_system_score_gemma":0.0004503936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009296308,"about_ca_topic_score_gemma":0.00002311437,"domain_scores_codex":[0.9972146,0.0003725078,0.001171024,0.0005205155,0.0001320108,0.000589365],"domain_scores_gemma":[0.9986924,0.0001584198,0.0003166029,0.0005814123,0.0001137084,0.0001374382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000140524,0.0001758073,0.00003158818,0.007703745,0.0002671684,0.00007120211,0.0001411317,8.687902e-7,0.0008254995,0.00001394422,0.007695754,0.9829327],"study_design_scores_gemma":[0.001258255,0.0003502496,0.00001972287,0.00621481,0.000424371,0.0001647458,0.000007390905,2.546972e-7,0.00009136565,0.000007488545,0.9912124,0.0002489653],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001122815,0.9958594,0.00000189702,0.00001831419,0.000111024,0.0004270006,0.000428043,0.00004523636,0.002996756],"genre_scores_gemma":[0.000006252998,0.997959,0.00039235,0.0001232151,0.00008730282,0.00006609399,0.0003006342,0.00006959071,0.0009955298],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9835166,"threshold_uncertainty_score":0.9998966,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3006294138","doi":"10.1016/j.tim.2020.01.006","title":"The Long-Term Relationship between Microbial Metabolism and Greenhouse Gases","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":151,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbial metabolism; Term (time); Greenhouse gas; Ecology; Bacteria; Genetics","authors":[{"name":"Lisa Y. Stein","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05462286897025121,"gpt":0.3025610659571289,"spread":0.2479381969868777,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001827211,0.0003577111,0.000876447,0.0002815879,0.0001023555,0.00004000737,0.0002452764,0.0004090432,0.00002758317],"category_scores_gemma":[0.00004665061,0.0002540403,0.0001689592,0.0004276997,0.0001919222,0.00004739802,0.00007955938,0.0006222551,0.00008146434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007282136,"about_ca_system_score_gemma":0.00002547217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005951016,"about_ca_topic_score_gemma":0.00009971629,"domain_scores_codex":[0.9985916,0.0001978586,0.0005253055,0.0003597499,0.0000251566,0.0003003239],"domain_scores_gemma":[0.9993223,0.0002509025,0.0001087792,0.0002489444,0.00001192761,0.00005714289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002918144,0.000006643215,0.000693283,0.0003650605,0.000100334,0.000009262743,0.00003611629,0.000002014857,0.00001822342,0.000713044,0.003126898,0.9949262],"study_design_scores_gemma":[0.0001428513,0.00001435527,0.003240502,0.0003461346,0.0002643256,0.0001243608,0.00000196146,2.361697e-7,0.000007095964,0.00001228535,0.9955934,0.0002525062],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004041952,0.998216,0.00002339373,0.0001510824,0.0006169018,0.0001694036,0.0001320843,0.0001702175,0.000116701],"genre_scores_gemma":[0.001803786,0.9962057,0.00007670723,0.00001413714,0.0004824652,0.00002304348,0.0008060163,0.00005426001,0.0005338595],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9946737,"threshold_uncertainty_score":0.9999912,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2169163713","doi":"10.1016/j.tim.2012.01.002","title":"Antibiotic resistance is ancient: implications for drug discovery","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Metagenomics; Antibiotics; Antibiotic resistance; Biology; Drug resistance; Resistance (ecology); Ecology; Profiling (computer programming); Microbiology; Biotechnology; Gene; Genetics","authors":[{"name":"Gerard D. Wright","is_ca":true},{"name":"Hendrik N. Poinar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02495666133210406,"gpt":0.3034520689820775,"spread":0.2784954076499734,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002577017,0.000101209,0.0001207951,0.00007429661,0.00006880816,0.00001891517,0.0001584068,0.0001026776,0.00002563261],"category_scores_gemma":[0.00007308941,0.0001012864,0.00007039149,0.0001391426,0.00008258152,0.000009521723,0.00005540018,0.0000472401,0.000009908809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002251868,"about_ca_system_score_gemma":0.00001866128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008428493,"about_ca_topic_score_gemma":0.0002716729,"domain_scores_codex":[0.9990979,0.00005264662,0.0002217614,0.0003015428,0.00001083876,0.0003152466],"domain_scores_gemma":[0.9994696,0.00002330031,0.00007493756,0.0003529028,0.00003969505,0.00003959304],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002579734,0.00008159994,0.03926768,0.00001050043,0.000007717016,2.451378e-8,0.00009243703,3.812849e-7,0.9410222,0.0006185837,0.01801815,0.0008549592],"study_design_scores_gemma":[0.0007967346,0.00004708823,0.4328044,0.00001708175,0.0000191601,0.00001383595,0.00009131884,0.000002077885,0.3292898,0.0001446914,0.2364235,0.0003502719],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962029,0.0007266848,0.0003918974,0.001050174,0.0003459677,0.0001197272,0.0002828253,0.00001252761,0.0008672535],"genre_scores_gemma":[0.9904845,0.00002034401,0.001503646,0.0005062154,0.0001613357,0.00001790557,0.0009021111,0.00001231215,0.006391645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6117324,"threshold_uncertainty_score":0.4130339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4206945683","doi":"10.1016/j.tim.2021.12.007","title":"Nucleotide biosynthesis: the base of bacterial pathogenesis","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Pathogenesis; Biosynthesis; Nucleotide; Base (topology); Microbiology; Computational biology; Genetics; Gene; Immunology","authors":[{"name":"Mariya I. Goncheva","is_ca":true},{"name":"Denny Chin","is_ca":true},{"name":"David E. Heinrichs","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06413261473353209,"gpt":0.2749570677554801,"spread":0.210824453021948,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004631845,0.0003010346,0.001030283,0.00007650094,0.0001082938,0.00001323691,0.0008254695,0.00028534,0.008444916],"category_scores_gemma":[0.00003103845,0.00009170127,0.0004906468,0.0007283353,0.0001526597,0.00001506218,0.0003477852,0.0003021626,0.00001921906],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005371038,"about_ca_system_score_gemma":0.00001997696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005466399,"about_ca_topic_score_gemma":0.0002463637,"domain_scores_codex":[0.9979103,0.0006719352,0.0006125973,0.0004195274,0.00004461574,0.0003409786],"domain_scores_gemma":[0.9989654,0.0004737496,0.0003605813,0.0001586546,0.000009918261,0.00003166356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001068694,0.0000945065,0.000003919055,0.0001274485,0.0000469676,0.000006185943,0.00001395187,7.82834e-8,0.01805154,0.00004842062,0.0004173487,0.9811789],"study_design_scores_gemma":[0.00005430622,0.0001547627,0.00005373394,0.0002232987,0.0001306289,0.00003363443,0.00003046497,1.847997e-7,0.00007115071,0.00001188513,0.9990377,0.0001982141],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002193347,0.9943175,5.923452e-8,0.0001217792,0.0004768177,0.0002229234,0.002152797,0.00002153126,0.0004932967],"genre_scores_gemma":[0.000861825,0.9970208,0.00002358372,0.00004545412,0.0001457614,0.00004875462,0.001691255,0.000003379958,0.0001591743],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9986204,"threshold_uncertainty_score":0.9924615,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006133563","doi":"10.1016/j.tim.2012.05.006","title":"Nectin 4 is the epithelial cell receptor for measles virus","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":141,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Izaak Walton Killam Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Measles virus; Biology; Oncolytic virus; Virology; Virus; Immune system; Morbillivirus; Vero cell; Immunology; Microbiology; Measles; Vaccination","authors":[{"name":"Ryan S. Noyce","is_ca":true},{"name":"Christopher D. Richardson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08979019228495781,"gpt":0.3747356263003425,"spread":0.2849454340153846,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003345385,0.0004175975,0.001532541,0.0002882956,0.00008827791,0.000004980062,0.0002951355,0.0008392541,0.00206666],"category_scores_gemma":[0.00005293743,0.0002389211,0.0007489328,0.0002338384,0.0002715859,0.00002067089,0.00008363688,0.0005650683,0.0006184125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007621441,"about_ca_system_score_gemma":0.0001124621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002196197,"about_ca_topic_score_gemma":0.00004522884,"domain_scores_codex":[0.9980937,0.0003551746,0.0005298343,0.0004433356,0.00002875322,0.0005492169],"domain_scores_gemma":[0.9988304,0.0003603845,0.000246881,0.0004569219,0.00002587352,0.00007958825],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002115884,0.0002725978,0.00003203021,0.002503678,0.0001982949,0.000004166669,0.0001085804,2.13486e-8,0.002497828,0.00004873629,0.03075165,0.9633708],"study_design_scores_gemma":[0.0007141581,0.0002650365,0.00002743769,0.0005650413,0.001707824,0.00008644983,0.000009546933,1.446462e-7,0.0002607118,0.00001828318,0.9961187,0.0002267227],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002294671,0.9956704,0.000003933048,0.0003900187,0.0008329018,0.0005969254,0.001534016,0.0000341506,0.0007081632],"genre_scores_gemma":[0.0001731251,0.9899638,0.0001718069,0.001090135,0.0008146057,0.0002946923,0.001618856,0.00005864845,0.005814318],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.965367,"threshold_uncertainty_score":0.9988456,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070620318","doi":"10.1016/j.tim.2004.07.002","title":"Phylogenetic reconstruction and lateral gene transfer","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Phylogenetic tree; Tree of life (biology); Horizontal gene transfer; Genome; Phylogenetics; Evolutionary biology; Clade; Core (optical fiber); Gene; Genetics; Tree (set theory); Computational biology; Computer science","authors":[{"name":"Éric Bapteste","is_ca":true},{"name":"Yan Boucher","is_ca":true},{"name":"James A. Leigh","is_ca":true},{"name":"W. Ford Doolittle","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02146499444623002,"gpt":0.2752295608195136,"spread":0.2537645663732835,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001034698,0.000420764,0.0008971685,0.0002378215,0.00004881,0.00001159609,0.0001809794,0.0006251758,0.00002944709],"category_scores_gemma":[0.000004882344,0.000370335,0.0002237698,0.0001379171,0.0002209793,3.818681e-7,0.0001166357,0.0001919793,0.000007496284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003703482,"about_ca_system_score_gemma":0.00007915806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001802607,"about_ca_topic_score_gemma":0.0001077816,"domain_scores_codex":[0.9983492,0.0001266561,0.0004613264,0.0006850128,0.00001852014,0.0003592565],"domain_scores_gemma":[0.9995568,0.00001093107,0.00007450884,0.0002914312,0.00001875461,0.00004751489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001285709,0.00002736714,0.00008995484,0.0006503612,0.0001900608,0.00000638107,0.00003051521,0.000004234439,0.04945464,0.00001431561,0.00003808172,0.9494812],"study_design_scores_gemma":[0.000727752,0.0002969054,0.0002068913,0.0006405731,0.0002402831,0.001426423,0.000005596271,2.057142e-7,0.001275099,0.00005745114,0.994498,0.0006247914],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02802437,0.9710212,0.00000896187,0.00001220609,0.0003994637,0.0001732917,0.0002006867,0.000003434312,0.0001564134],"genre_scores_gemma":[0.004122193,0.9942737,0.0004638699,0.00003029154,0.0001776964,0.00005111403,0.0005224199,0.00004533634,0.0003133985],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9944599,"threshold_uncertainty_score":0.9998748,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2788233869","doi":"10.1016/j.tim.2018.01.004","title":"The Archaellum: An Update on the Unique Archaeal Motility Structure","year":2018,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"European Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Motility; Archaea; Computational biology; Evolutionary biology; Genetics; Bacteria","authors":[{"name":"Sonja‐Verena Albers","is_ca":false},{"name":"Ken F. Jarrell","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02918875454101989,"gpt":0.3245198453146899,"spread":0.29533109077367,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006286461,0.0004921699,0.0006667281,0.0001016195,0.000207836,0.00002558026,0.0013699,0.000717395,0.0001026911],"category_scores_gemma":[0.00007224942,0.0002471975,0.0002723031,0.0002032733,0.0006766737,0.000001729649,0.0004080556,0.000615311,0.00002156069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000370829,"about_ca_system_score_gemma":0.0001763846,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001973271,"about_ca_topic_score_gemma":0.0009704168,"domain_scores_codex":[0.9973168,0.0007833039,0.0004667342,0.0008010908,0.00005165724,0.0005803668],"domain_scores_gemma":[0.998238,0.000092266,0.0002624703,0.001288908,0.00004732544,0.00007108647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009917346,0.0001065742,9.926923e-7,0.0004565154,0.0002076511,0.00001012588,0.00008090233,8.661466e-7,0.02681329,0.00310925,0.002225323,0.9668893],"study_design_scores_gemma":[0.0001057418,0.0003643458,8.76369e-7,0.0002419204,0.00005564283,0.0001456958,0.00001375456,0.000001753536,0.01391723,0.001277781,0.9836303,0.0002449497],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006611392,0.9900484,0.00007201704,0.0002975433,0.0007228004,0.0005580767,0.001080614,0.00002292358,0.0005862081],"genre_scores_gemma":[0.008602502,0.9879776,0.00007177587,0.0003945464,0.0003551351,0.00008476397,0.001866905,0.00005825075,0.0005884935],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.981405,"threshold_uncertainty_score":0.999998,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009283988","doi":"10.1016/j.tim.2011.04.004","title":"Structure and genetics of circular bacteriocins","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Bacteriocin; Biology; Bacteria; Antimicrobial peptides; Biogenesis; Membrane protein; Gene; Biochemistry; Genetics; Microbiology; Membrane","authors":[{"name":"Marco J. van Belkum","is_ca":true},{"name":"Leah A. Martin‐Visscher","is_ca":true},{"name":"John C. Vederas","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02279815697873174,"gpt":0.2789412449827838,"spread":0.2561430880040521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004001244,0.0002952145,0.0007739239,0.0001428988,0.00001398922,0.000004330991,0.0002150607,0.0008655753,0.00009335383],"category_scores_gemma":[0.00001019448,0.0002335634,0.0001465523,0.0001398359,0.0001876023,0.000001252772,0.0001670662,0.0001866553,0.000001074657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001040093,"about_ca_system_score_gemma":0.00003349561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005031543,"about_ca_topic_score_gemma":0.00001018094,"domain_scores_codex":[0.9988261,0.00009849629,0.0004249361,0.0004302976,0.00001606058,0.0002041285],"domain_scores_gemma":[0.9994147,0.000006120511,0.0002336607,0.0002806589,0.00002612056,0.00003874825],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000008922025,0.0000104815,0.00008921429,0.001139359,0.00006420724,0.00000120344,0.00001690594,2.825483e-8,0.3675477,0.00001539216,0.00005427303,0.6310523],"study_design_scores_gemma":[0.0001900418,0.0001306573,0.0003451817,0.0003452495,0.0001231881,0.0002056923,0.000001563016,1.718147e-7,0.01741975,0.00002461678,0.9808813,0.0003325668],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04724039,0.9519887,0.000004547768,0.000003154392,0.0001317617,0.00009522244,0.0004778815,0.000003588242,0.00005477557],"genre_scores_gemma":[0.009232101,0.9858051,0.0002443489,0.00002194335,0.00009729457,0.00000520237,0.004439223,0.0000267924,0.0001279949],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.980827,"threshold_uncertainty_score":0.9524438,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3042265014","doi":"10.1016/j.tim.2020.06.006","title":"Missing Microbes in Bees: How Systematic Depletion of Key Symbionts Erodes Immunity","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":130,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Canadian Science Centre for Human and Animal Health","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Immunity; Stressor; Host (biology); Disease; Ecology; Honey bee; Human health; Insect; Antibiotics; Honey Bees; Zoology; Immune system; Microbiology; Immunology; Environmental health","authors":[{"name":"Brendan A. Daisley","is_ca":true},{"name":"John A. Chmiel","is_ca":true},{"name":"Andrew P. Pitek","is_ca":true},{"name":"Graham Thompson","is_ca":true},{"name":"Gregor Reid","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08480665203773022,"gpt":0.3278573087649574,"spread":0.2430506567272272,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000721006,0.0003500098,0.002138933,0.000207723,0.00006307236,0.00003680727,0.0006160189,0.0005584939,0.0002696052],"category_scores_gemma":[0.0002118854,0.0001391538,0.0003265627,0.001159734,0.0001525057,0.00004390084,0.000174806,0.000606611,0.00002812416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001361465,"about_ca_system_score_gemma":0.00003989936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006277645,"about_ca_topic_score_gemma":0.002785755,"domain_scores_codex":[0.9966107,0.001657502,0.0007989859,0.0004126613,0.00006783556,0.0004522872],"domain_scores_gemma":[0.9985273,0.0008673164,0.0003897348,0.0001158218,0.00004631521,0.00005352588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002620337,0.0002016147,0.0003775271,0.05762713,0.00008255294,0.00004881399,0.0003040276,2.949945e-7,0.0707316,0.00004067805,0.0001935044,0.870366],"study_design_scores_gemma":[0.001404667,0.002097543,0.004984864,0.3433124,0.0007844222,0.001079798,0.001040151,0.00002703068,0.001687477,0.0003763516,0.6399494,0.003255945],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01687232,0.9820437,4.750931e-7,0.0001936824,0.0001077957,0.0004329468,0.0001847141,0.00002083305,0.0001435079],"genre_scores_gemma":[0.02984685,0.9685713,0.00008206545,0.00001840542,0.00009076431,0.00005246291,0.00119897,0.000004440842,0.0001347621],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8671101,"threshold_uncertainty_score":0.5674527,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2563256976","doi":"10.1016/j.tim.2016.12.003","title":"Rules of Engagement: The Type VI Secretion System in Vibrio cholerae","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Vibrio cholerae; Type VI secretion system; Biology; Microbiology; Virulence; Quorum sensing; Pilus; Effector; Cholera toxin; Biofilm; Secretion; Host (biology); Bacteria; Cell biology; Ecology; Gene; Genetics","authors":[{"name":"Avatar Joshi","is_ca":false},{"name":"Benjamin Kostiuk","is_ca":true},{"name":"Andrew W. Rogers","is_ca":false},{"name":"Jennifer K. Teschler","is_ca":false},{"name":"Stefan Pukatzki","is_ca":false},{"name":"Fitnat H. Yildiz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04183602256008123,"gpt":0.3459612202563405,"spread":0.3041251976962593,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007023192,0.0003190533,0.0009678373,0.0003266816,0.00003975272,0.000008815473,0.0005174882,0.0004537331,0.00006084251],"category_scores_gemma":[0.00009035524,0.0001879164,0.000209199,0.0002409465,0.0002515597,0.000002233705,0.0004780464,0.0002942498,0.00004776154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001135119,"about_ca_system_score_gemma":0.0001065668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002747109,"about_ca_topic_score_gemma":0.00009156476,"domain_scores_codex":[0.9975221,0.0009368098,0.0006164175,0.0004810138,0.00004538687,0.0003982651],"domain_scores_gemma":[0.9990287,0.0000778503,0.000278705,0.0005377631,0.00005302786,0.00002390098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001027145,0.00007903713,0.00009132142,0.004631221,0.0004224977,0.00001426535,0.00009522253,8.075995e-7,0.1415044,0.0002428157,0.002185878,0.8506298],"study_design_scores_gemma":[0.0003584423,0.0001733753,0.0001040475,0.002759728,0.00004031363,0.00003546715,0.00001927748,3.123195e-7,0.0004083037,0.000002653514,0.9959009,0.0001971946],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004497911,0.9932936,0.000005171258,0.00002978269,0.0003022421,0.0003201003,0.0002892414,0.000007776804,0.001254105],"genre_scores_gemma":[0.004129837,0.9938292,0.00004139763,0.00001173955,0.0001702442,0.00009071465,0.001112429,0.00003376459,0.0005806693],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.993715,"threshold_uncertainty_score":0.7663009,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984002397","doi":"10.1016/s0966-842x(00)01788-1","title":"Picornavirus RNA translation: roles for cellular proteins","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Picornavirus; Biology; Translation (biology); RNA; RNA-binding protein; Protein biosynthesis; Internal ribosome entry site; Tropism; Cell biology; Virology; Viral structural protein; Ribosome; Computational biology; Viral entry; Molecular biology; Messenger RNA; Viral replication; Virus; Genetics; Gene","authors":[{"name":"Graham J. Belsham","is_ca":false},{"name":"Nahum Sonenberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1164619584823456,"gpt":0.4064850562825447,"spread":0.2900230978001991,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002340934,0.0003440007,0.001626321,0.0009457307,0.00007830476,0.0000101915,0.0001788736,0.001247656,0.001369593],"category_scores_gemma":[0.00001358608,0.0002650955,0.000579333,0.0005324868,0.0002157752,0.00002932181,0.00002550185,0.001098401,0.0001796491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001186762,"about_ca_system_score_gemma":0.0001730192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002397635,"about_ca_topic_score_gemma":0.0000485338,"domain_scores_codex":[0.9981634,0.0002146724,0.0006321597,0.0004790083,0.00002959005,0.0004811622],"domain_scores_gemma":[0.9993193,0.00009293309,0.0001147108,0.0003929111,0.00003421514,0.00004598381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008617363,0.0001700441,0.000003864972,0.001459701,0.0001758491,0.00001970886,0.00002249472,1.843382e-7,0.001664257,0.00002502714,0.0006541755,0.9957185],"study_design_scores_gemma":[0.001060836,0.0007045546,0.000002902468,0.001681792,0.0003314864,0.0002498688,0.00000267858,0.00000180608,0.0001549378,0.00001842263,0.9955767,0.0002140316],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008927371,0.9953027,0.00004556905,0.0001582348,0.0001619511,0.001131951,0.000204234,0.00004439999,0.002861729],"genre_scores_gemma":[0.00003810421,0.9902326,0.0005063206,0.00004183483,0.0001970486,0.0006208353,0.002283977,0.00005308439,0.006026154],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9955045,"threshold_uncertainty_score":0.9999802,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031984687","doi":"10.1016/j.tim.2014.01.007","title":"To acquire or resist: the complex biological effects of CRISPR–Cas systems","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"CRISPR; Biology; Computational biology; DNA; Palindrome; Genetics; Gene","authors":[{"name":"Joseph Bondy‐Denomy","is_ca":true},{"name":"Alan R. Davidson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04346834040777872,"gpt":0.3920075890086491,"spread":0.3485392486008704,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003303325,0.0004467372,0.001473557,0.0002212311,0.00004066997,0.00001132118,0.0006999989,0.0007193726,0.00003219916],"category_scores_gemma":[0.0001568007,0.0002526551,0.0003383541,0.0003264461,0.0001668529,6.108539e-7,0.0003452238,0.000219795,0.00002266986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003037247,"about_ca_system_score_gemma":0.00004795439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002451473,"about_ca_topic_score_gemma":0.00008144122,"domain_scores_codex":[0.9977588,0.0004736585,0.0006928428,0.0005996366,0.00003797511,0.0004370603],"domain_scores_gemma":[0.9987456,0.0002119516,0.0002021721,0.0007393571,0.00003477881,0.00006615968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001495665,0.0001459984,0.00003883349,0.01278367,0.0005065174,0.00003738868,0.00009431597,0.0001388441,0.1293426,0.0001228099,0.02910415,0.8275353],"study_design_scores_gemma":[0.0002346686,0.0005301859,0.0000648203,0.001098308,0.0001066737,0.0001558966,0.000008926562,0.000001799723,0.001997955,0.00000121088,0.9954824,0.000317165],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004410043,0.9965455,0.001576423,0.00003042438,0.0006124334,0.0005174754,0.0001039275,0.00001398727,0.0001588576],"genre_scores_gemma":[0.00748119,0.9895003,0.0003413771,0.000111846,0.0004038113,0.0001982688,0.0008951166,0.00005790456,0.001010175],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9663782,"threshold_uncertainty_score":0.9999925,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050356851","doi":"10.1016/j.tim.2008.07.002","title":"Campylobacter sugars sticking out","year":2008,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":124,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences; University of Alberta","funders":"","keywords":"Glycobiology; Biology; Campylobacter jejuni; Glycome; Glycan; Glycoconjugate; Campylobacter; Computational biology; Microbiology; Biochemistry; Bacteria; Genetics; Glycoprotein","authors":[{"name":"Patricia Guerry","is_ca":false},{"name":"Christine M. Szymanski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1031885086190696,"gpt":0.3329223767166172,"spread":0.2297338680975475,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002750704,0.0006916157,0.002601796,0.000157688,0.0001089018,0.0000190092,0.0008209831,0.001265372,0.001639708],"category_scores_gemma":[0.00007077498,0.0002562102,0.0007661433,0.0006351279,0.000254956,0.00004298548,0.000253666,0.0007686923,0.0006237417],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001545703,"about_ca_system_score_gemma":0.00002795372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001439894,"about_ca_topic_score_gemma":0.00145363,"domain_scores_codex":[0.9959815,0.0009144015,0.001079128,0.0010049,0.00004995991,0.0009701244],"domain_scores_gemma":[0.9982695,0.0009437836,0.0004489296,0.0001961502,0.00002934518,0.0001122805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006082648,0.00005516555,0.000418891,0.0001013182,0.00005139809,0.00007261049,0.00003089122,9.247741e-8,0.0003641327,0.00002039356,0.005465932,0.9934131],"study_design_scores_gemma":[0.00009833241,0.0001032012,0.0007554066,0.000611126,0.0000691472,0.0007559395,0.000009837688,2.135788e-7,0.000002063318,0.00002485342,0.9970306,0.000539239],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002778648,0.9937606,4.007901e-7,0.00008397673,0.000914383,0.000203103,0.0003074066,0.00009299476,0.001858477],"genre_scores_gemma":[0.0001869506,0.9943159,0.00005562391,0.0002351729,0.0005688781,0.00005567413,0.003080487,0.000006081928,0.001495258],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9928738,"threshold_uncertainty_score":0.999989,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}