{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":364,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":364,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"88f49cd18f35","filters":{"venue":"Veterinary Microbiology"}},"results":[{"id":"W2098383110","doi":"10.1016/j.vetmic.2009.01.039","title":"Methicillin-resistant Staphylococcus aureus and Staphylococcus pseudintermedius in veterinary medicine","year":2009,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":639,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Staphylococcus pseudintermedius; Staphylococcus aureus; Biology; Staphylococcus; Staphylococcal infections; Veterinary medicine; Transmission (telecommunications); Microbiology; Staphylococcus intermedius; Medicine; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.07361208846903623,"gpt":0.365786946708701,"spread":0.2921748582396648,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.001369726,0.00224384,0.007954291,0.0022334,0.0002166713,0.00005214786,0.0009787428,0.002313692,0.0003406246],"category_scores_gemma":[0.0004813954,0.00180498,0.0009824003,0.001247842,0.002161065,0.0001452902,0.0007368283,0.002868813,0.0001396623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009213275,"about_ca_system_score_gemma":0.0007980998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001318781,"about_ca_topic_score_gemma":0.0000413303,"domain_scores_codex":[0.9905831,0.001407695,0.003138285,0.002604184,0.0003044436,0.001962248],"domain_scores_gemma":[0.9949623,0.001121066,0.001222377,0.001851035,0.0002436248,0.0005995918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002490859,0.0005861302,0.00001485156,0.03090416,0.000850243,0.01483866,0.0003816378,5.958756e-7,0.3838795,0.0001373898,0.008242353,0.5576736],"study_design_scores_gemma":[0.002465003,0.0096968,0.0000968652,0.03332325,0.001132941,0.002216562,0.00009715682,0.000001913761,0.00007484435,0.00007858165,0.9493499,0.001466149],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02639692,0.9667881,0.00003408959,0.0004518836,0.0009514517,0.003555662,0.0006001187,0.0002450661,0.0009766928],"genre_scores_gemma":[0.00363015,0.991401,0.001193466,0.0009300478,0.0007630467,0.0002758214,0.0008344387,0.0002910389,0.0006809572],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9411076,"threshold_uncertainty_score":0.9994316,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028081076","doi":"10.1016/j.vetmic.2009.04.011","title":"Verocytotoxin-producing Escherichia coli (VTEC)","year":2009,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":527,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Public Health Agency of Canada","funders":"","keywords":"Verocytotoxin; VTEC; Biology; Escherichia coli; Microbiology; Shiga-like toxin; Bacterial adhesin; Pilus; Enterobacteriaceae","retraction":null,"screen_n_in":null,"score":{"opus":0.0589354921362271,"gpt":0.3520438233035343,"spread":0.2931083311673072,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004213905,0.000855735,0.001770276,0.0001810359,0.0002198914,0.00004101403,0.0009584043,0.0009634483,0.0000525868],"category_scores_gemma":[0.0002296288,0.0007557751,0.0006423978,0.0003230432,0.0003169379,0.000004581194,0.001107876,0.0006636203,0.0002074896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001153781,"about_ca_system_score_gemma":0.0004474097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001063384,"about_ca_topic_score_gemma":0.000007009209,"domain_scores_codex":[0.9961094,0.000694012,0.0006944909,0.001455382,0.00008224561,0.0009644504],"domain_scores_gemma":[0.9981251,0.00006195556,0.0003419431,0.001213264,0.0001094873,0.0001482873],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001095847,0.0001495306,0.000001044967,0.004117193,0.0006435855,0.0001424818,0.00002405821,7.987002e-7,0.6755795,0.00001140665,0.01247997,0.3067408],"study_design_scores_gemma":[0.0002507315,0.00213728,0.000002832364,0.001014878,0.0001565908,0.0006822289,0.000007635054,3.486161e-7,0.001148309,0.00000430898,0.9938544,0.000740468],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006395736,0.9909867,0.00002749425,0.00002984683,0.0004799899,0.001019555,0.0001506916,0.00006304269,0.0008469414],"genre_scores_gemma":[0.0002019021,0.994323,0.001165982,0.0002348081,0.000808731,0.0002477143,0.001013888,0.0001187847,0.001885145],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9813744,"threshold_uncertainty_score":0.9994893,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2112417119","doi":"10.1016/j.vetmic.2007.10.006","title":"Methicillin resistant Staphylococcus aureus colonization in pigs and pig farmers","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":480,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Colonization; Veterinary medicine; Methicillin-resistant Staphylococcus aureus; Biology; Staphylococcus aureus; Pig farming; Transmission (telecommunications); Staphylococcal infections; Microbiology; Medicine; Animal science; Bacteria; Animal production","retraction":null,"screen_n_in":null,"score":{"opus":0.02675038130441657,"gpt":0.3025395616520583,"spread":0.2757891803476417,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008445489,0.0002821096,0.000518383,0.0004268871,0.00009600104,0.00001424634,0.0001320497,0.0003933423,0.00007775176],"category_scores_gemma":[0.0001172362,0.0002709373,0.00007604314,0.0004643027,0.0004707336,0.00006249463,0.0001235917,0.0004236166,0.00002842407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002314325,"about_ca_system_score_gemma":0.0001155685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001155458,"about_ca_topic_score_gemma":0.0002245887,"domain_scores_codex":[0.9979817,0.000149143,0.0005860922,0.0005618141,0.00007302087,0.0006482159],"domain_scores_gemma":[0.9990061,0.0002466939,0.0001533423,0.0003311687,0.0001224584,0.0001402254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002722079,0.0001565204,0.008731474,0.0001185165,0.00004007759,0.0008252417,0.0003178769,0.000003649584,0.9855092,0.0002191135,0.0003844601,0.000971784],"study_design_scores_gemma":[0.0152201,0.01809157,0.343098,0.001145532,0.0003097768,0.001511683,0.003162718,0.00007611732,0.2222941,0.0005746215,0.3919748,0.002540915],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99551,0.001262679,0.0009031251,0.0004901281,0.0002494188,0.0006393018,0.00005922306,0.0000749309,0.0008111708],"genre_scores_gemma":[0.9951105,0.0002676461,0.003122303,0.0009619787,0.00007661869,0.00001252366,0.00009705805,0.00004087076,0.0003105315],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7632151,"threshold_uncertainty_score":0.9999743,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974726085","doi":"10.1016/s0378-1135(00)00250-9","title":"The pathogenesis of the meningitis caused by Streptococcus suis: the unresolved questions","year":2000,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":386,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus suis; Biology; Virulence; Pathogenesis; Meningitis; Serotype; Microbiology; Immunology; Disease; Immune system; Virology; Medicine; Gene; Pathology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.04488534505468777,"gpt":0.3360710160449882,"spread":0.2911856709903005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001713593,0.0004402792,0.001026934,0.00006735123,0.0005434524,0.00002191077,0.0004152792,0.000368382,0.0002528894],"category_scores_gemma":[0.00005134616,0.0001793709,0.0007960993,0.0003764995,0.0006179811,0.00001642286,0.0001796016,0.0003967456,0.00006800608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001346186,"about_ca_system_score_gemma":0.0002468844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001135766,"about_ca_topic_score_gemma":0.00002121088,"domain_scores_codex":[0.9977394,0.0007202473,0.0006745266,0.0004144899,0.00006067579,0.0003906375],"domain_scores_gemma":[0.9977579,0.0006107174,0.0003807823,0.001126363,0.00006419785,0.00006005463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006196795,0.0004710792,0.0004602164,0.00135481,0.002411884,0.0000895378,0.00006942817,6.755844e-7,0.0118905,0.00006200417,0.01190157,0.9712263],"study_design_scores_gemma":[0.0003449463,0.0007072877,0.0003059745,0.001789376,0.00137298,0.0009530534,0.00001456061,3.205282e-7,0.00008439622,0.000006844991,0.994262,0.0001582215],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005397923,0.9898869,0.000002396087,0.0001750961,0.0004871592,0.002476402,0.001139646,0.00004797119,0.0003864395],"genre_scores_gemma":[0.001931872,0.9942374,0.00001202599,0.00004110399,0.0001004601,0.0009825288,0.0003797179,0.00005387043,0.002261083],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9823605,"threshold_uncertainty_score":0.7314532,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070709993","doi":"10.1016/j.vetmic.2006.01.004","title":"Suspected transmission of methicillin-resistant Staphylococcus aureus between domestic pets and humans in veterinary clinics and in the household","year":2006,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":303,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University of Guelph","funders":"","keywords":"Transmission (telecommunications); Veterinary medicine; Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Colonization; Pulsed-field gel electrophoresis; Staphylococcal infections; Biology; CATS; Meticillin; Pathogen; Polymerase chain reaction; Microbiology; Virology; Medicine; Genotype; Bacteria; Gene; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.04183412012763867,"gpt":0.3159614383455383,"spread":0.2741273182178997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007808627,0.0003286046,0.0008215822,0.0003833252,0.00007775004,0.00001431458,0.0002162053,0.0003599615,0.00001620114],"category_scores_gemma":[0.00006615541,0.0002507503,0.0000933495,0.000389216,0.0007141348,0.00005413131,0.0001058244,0.0005866414,0.000001222838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006839271,"about_ca_system_score_gemma":0.0000783697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002636159,"about_ca_topic_score_gemma":0.00007822853,"domain_scores_codex":[0.9974702,0.0005075422,0.0008893195,0.0005555044,0.00009423832,0.0004831939],"domain_scores_gemma":[0.9985408,0.0007911457,0.0002024022,0.0003505042,0.00005006851,0.00006513159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00173293,0.0002196108,0.01917081,0.0003553878,0.00002624702,0.0008439117,0.0004329855,0.000008889259,0.976191,0.00005121863,0.00008033606,0.0008867108],"study_design_scores_gemma":[0.005137347,0.005786472,0.9630276,0.0007609153,0.0001450241,0.0003999609,0.0003869562,0.00001759316,0.009414042,0.0005359927,0.01387068,0.0005174443],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953527,0.003073552,0.00007710278,0.0003657696,0.00004898234,0.0007478403,0.0001610622,0.00003275692,0.00014023],"genre_scores_gemma":[0.9978152,0.0005703249,0.001233246,0.000149056,0.00006291732,0.00002030304,0.00007172364,0.00003652521,0.0000406896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9667769,"threshold_uncertainty_score":0.9999945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976175476","doi":"10.1016/j.vetmic.2007.01.015","title":"β-Lactam resistance and β-lactamases in bacteria of animal origin","year":2007,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":265,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Canada","funders":"","keywords":"Biology; Lactam; Bacteria; Microbiology; Beta-lactam; Enterobacteriaceae; Antibacterial agent; Antibiotics; Genetics; Escherichia coli; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.05505503480397701,"gpt":0.3497894598588508,"spread":0.2947344250548738,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003478202,0.0005339697,0.001479647,0.0002424128,0.00003262241,0.00001466577,0.0004073258,0.0008914785,0.00004436556],"category_scores_gemma":[0.0000682976,0.0004899261,0.0002203142,0.0001910874,0.0004752069,0.000005618103,0.0003397096,0.0002490843,0.000009933696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005041188,"about_ca_system_score_gemma":0.0001863834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008928326,"about_ca_topic_score_gemma":0.00003984104,"domain_scores_codex":[0.9974074,0.0003143468,0.0009235349,0.0008176167,0.00003994922,0.0004971857],"domain_scores_gemma":[0.998708,0.00008666138,0.0005001206,0.0005888683,0.00004621957,0.00007020733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009847058,0.000126563,0.0001732225,0.01062925,0.0001678506,0.0001747396,0.00001862146,2.331452e-8,0.9433972,0.00006345516,0.0008630473,0.04340129],"study_design_scores_gemma":[0.0003007423,0.0009444345,0.0001711647,0.002597368,0.00006860544,0.0006115683,0.00001087398,3.612563e-8,0.00185851,0.000003356449,0.9929768,0.0004564756],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.2497464,0.7491702,0.000009493204,0.000004381556,0.0002219267,0.0003577486,0.0002664217,0.000008534708,0.0002148578],"genre_scores_gemma":[0.008886192,0.9879541,0.001661366,0.00002369879,0.000163362,0.0000142639,0.0007837235,0.0000727853,0.0004404802],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9921138,"threshold_uncertainty_score":0.9997553,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2030059730","doi":"10.1016/j.vetmic.2005.01.003","title":"Biochemical analysis, cpn60 and 16S rDNA sequence data indicate that Streptococcus suis serotypes 32 and 34, isolated from pigs, are Streptococcus orisratti","year":2005,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":247,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Centre for Disease Control; Biotechnology Research Institute; Université de Montréal; Plant Biotechnology Institute","funders":"","keywords":"Streptococcus suis; Serotype; Biology; Microbiology; 16S ribosomal RNA; Streptococcaceae; Streptococcus; Sequence analysis; Bacteria; Gene; Genetics; Virulence; Antibiotics","retraction":null,"screen_n_in":null,"score":{"opus":0.08755821153361357,"gpt":0.3349866219670263,"spread":0.2474284104334127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001149971,0.0004252275,0.0007571304,0.0002988275,0.0001691995,0.00005221406,0.0002437999,0.0003882567,0.0006240529],"category_scores_gemma":[0.00004263538,0.0003527135,0.0001039622,0.0004261008,0.0004215653,0.0001943172,0.0005713911,0.0003349048,0.00005880547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000104517,"about_ca_system_score_gemma":0.00005729435,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004926373,"about_ca_topic_score_gemma":0.0001119761,"domain_scores_codex":[0.9977278,0.0001332341,0.0004224809,0.001175173,0.00006726853,0.0004740527],"domain_scores_gemma":[0.9982466,0.0001493238,0.0002398514,0.001040217,0.00006415851,0.000259908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000234358,0.0002578104,0.5888088,0.00002900581,0.001639996,0.0001882206,0.00006757474,0.000001317689,0.4041349,0.000003514472,0.0007067437,0.003927812],"study_design_scores_gemma":[0.007865633,0.004078317,0.8632663,0.0003395915,0.005041648,0.001979139,0.0004324543,0.001732345,0.05702033,0.0000668629,0.0566905,0.001486866],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934797,0.002468782,0.0001569004,0.000480459,0.00009225067,0.0007824669,0.002350289,0.0001297699,0.00005939482],"genre_scores_gemma":[0.9928939,0.0005950517,0.001191363,0.0002354959,0.0001458148,0.00007757185,0.004711425,0.00003081058,0.0001186055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3471145,"threshold_uncertainty_score":0.9998925,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963617975","doi":"10.1016/j.vetmic.2013.06.025","title":"Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis","year":2013,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université Laval; Institut Universitaire de Cardiologie et de Pneumologie de Québec","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Aeromonas salmonicida; Biology; Virulence; Microbiology; Bacteria; Genome; Aquaculture; Aeromonas; Fish <Actinopterygii>; Gene; Genetics; Fishery","retraction":null,"screen_n_in":null,"score":{"opus":0.03694619553972846,"gpt":0.2792164213722733,"spread":0.2422702258325449,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002911834,0.0009515908,0.002681886,0.0003061723,0.0002199603,0.00002003351,0.001065222,0.001126381,0.0006874169],"category_scores_gemma":[0.00005501155,0.0006164205,0.0007278597,0.0002944672,0.001601397,0.00007404431,0.001180855,0.0008201153,0.0002360975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001479234,"about_ca_system_score_gemma":0.0001673816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003270398,"about_ca_topic_score_gemma":0.0000490832,"domain_scores_codex":[0.9959481,0.001099649,0.001258327,0.0009335818,0.00003571319,0.0007245893],"domain_scores_gemma":[0.9971998,0.0005574877,0.001342423,0.0007185524,0.0001313174,0.00005039133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003132944,0.0004514765,0.00002210857,0.01097377,0.005116456,0.00005561898,0.0007849752,8.927379e-7,0.8324315,0.0003855075,0.05191953,0.09754486],"study_design_scores_gemma":[0.0006624454,0.0009209531,0.000271094,0.00206661,0.002146382,0.001334233,0.0001806412,9.45516e-8,0.004155934,0.00001343325,0.9875818,0.0006663742],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06261386,0.932126,0.000005153749,0.00005063729,0.0006436836,0.001825501,0.002358862,0.00004184433,0.0003344319],"genre_scores_gemma":[0.01965698,0.9759652,0.00005881868,0.0001318049,0.00005377677,0.0001769369,0.002050935,0.00008089728,0.001824626],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9356623,"threshold_uncertainty_score":0.9996287,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2557370976","doi":"10.1016/j.vetmic.2016.11.029","title":"Vaccines for porcine epidemic diarrhea virus and other swine coronaviruses","year":2016,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":190,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Porcine epidemic diarrhea virus; Virology; Biology; Coronavirus; Virus; Diarrhea; Coronavirus disease 2019 (COVID-19); Medicine; Infectious disease (medical specialty); Disease","retraction":null,"screen_n_in":null,"score":{"opus":0.1435631076408472,"gpt":0.353640376144516,"spread":0.2100772685036688,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002346726,0.0005080123,0.001440108,0.00003981135,0.0002809706,0.00001669717,0.0002714533,0.0004196785,0.0004302481],"category_scores_gemma":[0.0001010829,0.0001628851,0.0003451349,0.0001387722,0.0001954727,0.000048938,0.0003204176,0.0001459401,0.0001712243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005566491,"about_ca_system_score_gemma":0.00001357537,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001122537,"about_ca_topic_score_gemma":0.0001365191,"domain_scores_codex":[0.9980938,0.0002199335,0.0005430171,0.000656245,0.00002207468,0.0004648649],"domain_scores_gemma":[0.9982458,0.0012247,0.0003150933,0.000101497,0.00004689865,0.00006605445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006321771,0.00004491,0.0000624942,0.0007944112,0.0001613915,0.000005244585,0.000005729191,5.60894e-9,0.0990097,0.00007700522,0.002043743,0.8977321],"study_design_scores_gemma":[0.0001243012,0.001527787,0.00005325087,0.001132374,0.0001388103,0.0006740638,0.000004479219,5.798379e-8,0.00005997663,0.00004501703,0.9958399,0.0003999915],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01061327,0.9849725,0.00000628869,0.0001121576,0.0004056148,0.0008591056,0.00282006,0.0001061327,0.0001048509],"genre_scores_gemma":[0.0003284576,0.9975309,0.00008362317,0.0002638018,0.0007811229,0.0003023963,0.0001563343,0.000008230586,0.0005451124],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9937962,"threshold_uncertainty_score":0.6642262,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977563342","doi":"10.1016/s0378-1135(02)00174-8","title":"Reproduction of postweaning multisystemic wasting syndrome (PMWS) in immunostimulated and non-immunostimulated 3-week-old piglets experimentally infected with porcine circovirus type 2 (PCV2)","year":2002,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":180,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"European Commission","keywords":"Porcine circovirus; Circovirus; Biology; Wasting Syndrome; Keyhole limpet hemocyanin; Virology; Subclinical infection; Immunology; Virus; Wasting; Antibody; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.03113228881289151,"gpt":0.222159088490735,"spread":0.1910267996778434,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001777093,0.0002675621,0.0004721659,0.00008388316,0.000203566,0.00001616841,0.0001325692,0.0001721336,0.0001621086],"category_scores_gemma":[0.00009315029,0.000138107,0.00004057744,0.0006369607,0.0001947071,0.0001373197,0.0002022767,0.0001996785,0.00002678527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007937305,"about_ca_system_score_gemma":0.00000351507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009858763,"about_ca_topic_score_gemma":0.00007826259,"domain_scores_codex":[0.9983971,0.0001601514,0.0004871948,0.0005517847,0.00004928801,0.0003544718],"domain_scores_gemma":[0.9993487,0.0001362495,0.0002357587,0.0001267842,0.0001164616,0.00003607541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002177256,0.00019513,0.03829687,0.00002744794,0.00006268487,0.0000845179,0.0003587232,0.00008767418,0.9598978,9.02189e-7,0.00001328392,0.0007573024],"study_design_scores_gemma":[0.002520232,0.02819758,0.8202657,0.001114281,0.00008363894,0.01319887,0.001203073,0.0009456731,0.1307522,0.000005401502,0.0006616203,0.001051823],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971669,0.001954269,0.000001258284,0.00006488515,0.0001767539,0.0004275221,0.00002442995,0.00009566188,0.00008825926],"genre_scores_gemma":[0.999499,0.0001555258,0.000131057,0.00002784138,0.00002973139,0.00001261067,0.00007609749,0.000005252461,0.00006294047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8291456,"threshold_uncertainty_score":0.5631839,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010891932","doi":"10.1016/j.vetmic.2015.03.024","title":"Interplay between iron homeostasis and virulence: Fur and RyhB as major regulators of bacterial pathogenicity","year":2015,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal; Armand Frappier Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Armand-Frappier Foundation","keywords":"Biology; Virulence; Iron homeostasis; Biofilm; Bacteria; Pathogenic bacteria; Quorum sensing; Microbiology; Pathogen; Homeostasis; Escherichia coli; Cell biology; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02413123946936794,"gpt":0.3117895850945146,"spread":0.2876583456251466,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003213309,0.000569629,0.00156315,0.0001778754,0.00005668442,0.00002087607,0.0004090546,0.001854041,0.00003283815],"category_scores_gemma":[0.00004767044,0.0004873514,0.0002070729,0.0001095431,0.0006905567,0.000004089758,0.001270255,0.0002646442,0.000009748512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002635995,"about_ca_system_score_gemma":0.0001812434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001982534,"about_ca_topic_score_gemma":0.000005166349,"domain_scores_codex":[0.9976051,0.0003474661,0.0006989809,0.0008958091,0.00004267884,0.0004099435],"domain_scores_gemma":[0.9987319,0.00002864792,0.000469409,0.0005780978,0.00007187306,0.0001201378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001181176,0.00002535836,0.000008833512,0.001406686,0.0001763579,0.00001161705,0.00001448539,6.233252e-9,0.5974752,0.000006715839,0.0001801672,0.4005764],"study_design_scores_gemma":[0.000435751,0.003549206,0.00001670305,0.0004639798,0.0003571661,0.001581782,0.00001242902,4.103365e-8,0.0150333,0.00001908073,0.978029,0.0005016088],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.450227,0.5480564,0.000002446866,0.00001042664,0.000293823,0.0003030469,0.001079348,0.000009889844,0.00001760268],"genre_scores_gemma":[0.01837522,0.978639,0.0004558036,0.00002409068,0.0003730362,0.00002755536,0.001960872,0.00006375257,0.00008067174],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9778488,"threshold_uncertainty_score":0.9997578,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1978433956","doi":"10.1016/j.vetmic.2010.05.010","title":"Genotypic evolution and antigenic drift of H9N2 influenza viruses in China from 1994 to 2008","year":2010,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"","keywords":"Reassortment; Biology; Virology; Genotype; Antigenic drift; Virus; China; Antigenic shift; H5N1 genetic structure; Influenza A virus; Pandemic; Influenza A virus subtype H5N1; Genetics; Gene; Coronavirus disease 2019 (COVID-19); Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.05072099068185359,"gpt":0.3572346522372366,"spread":0.306513661555383,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001960566,0.0001779046,0.0004360178,0.0003411892,0.00006114034,0.000004921172,0.0001315545,0.0001952931,0.0001383901],"category_scores_gemma":[0.0001965497,0.0001566318,0.00005037362,0.0002194553,0.0003422524,0.00006029536,0.0003063725,0.0003709324,0.0000635715],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004220404,"about_ca_system_score_gemma":0.00008139405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0017121,"about_ca_topic_score_gemma":0.0003921343,"domain_scores_codex":[0.9987626,0.00009296924,0.000351487,0.0003535299,0.00005545337,0.0003839503],"domain_scores_gemma":[0.9993643,0.00009073135,0.00006792859,0.0003320152,0.00005030868,0.00009474424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009705912,0.00008185943,0.08812129,0.00004510978,0.00006318613,0.00004503144,0.0005523175,0.000001939122,0.908982,0.00003009576,0.0002927841,0.0008137597],"study_design_scores_gemma":[0.001958814,0.002031617,0.8789725,0.00008624743,0.00002988113,0.0002502712,0.00006487923,0.00001060179,0.06762584,0.00009818923,0.04865515,0.0002160423],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964284,0.002510551,0.00001771636,0.0001055657,0.0002067536,0.000425676,0.0001434928,0.00002852902,0.0001333532],"genre_scores_gemma":[0.9973829,0.000114169,0.001755835,0.0005697963,0.00008557676,0.00002321612,0.00001887958,0.0000180187,0.00003155406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8413562,"threshold_uncertainty_score":0.6387259,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078867490","doi":"10.1016/j.vetmic.2005.11.054","title":"An outbreak of methicillin-resistant Staphylococcus aureus skin infections resulting from horse to human transmission in a veterinary hospital","year":2005,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":172,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University of Guelph","funders":"","keywords":"Outbreak; Transmission (telecommunications); Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Medicine; Infection control; Veterinary medicine; Foal; Staphylococcal infections; Skin infection; Colonization; Staphylococcal Skin Infections; Microbiology; Biology; Virology; Intensive care medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.02572854705209111,"gpt":0.3224090700010532,"spread":0.2966805229489621,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004916742,0.0004724892,0.0009398658,0.0006324891,0.000166996,0.00001950175,0.0003814139,0.0004882486,0.0001887567],"category_scores_gemma":[0.0001065078,0.0004592917,0.00025818,0.0005378078,0.0003223677,0.0001663491,0.0001649222,0.000615249,0.00004292283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002973606,"about_ca_system_score_gemma":0.0001458952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001215607,"about_ca_topic_score_gemma":0.0002888534,"domain_scores_codex":[0.9966756,0.0004291202,0.001130391,0.000920415,0.0001291772,0.0007153366],"domain_scores_gemma":[0.9982164,0.0002084705,0.0002746252,0.0008312555,0.0001786065,0.0002906572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00235512,0.001340941,0.001077733,0.00009734393,0.00008837545,0.0003206769,0.002434381,0.0001407266,0.9857695,0.00002385124,0.0003114101,0.006039978],"study_design_scores_gemma":[0.00959678,0.04885863,0.09078565,0.002069961,0.0003023997,0.0001870969,0.00167118,0.000218664,0.6685615,0.0001317044,0.1756177,0.001998724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957821,0.0004167917,0.0009361307,0.0007644015,0.0002037099,0.001021085,0.0005089471,0.0001225341,0.0002443398],"genre_scores_gemma":[0.9861497,0.00005262128,0.01267606,0.0003792614,0.0002427089,0.00006220888,0.0002841126,0.00007600978,0.00007734371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.317208,"threshold_uncertainty_score":0.9997859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2000471111","doi":"10.1016/s0378-1135(00)00345-x","title":"Identification and detection of Actinobacillus pleuropneumoniae by PCR based on the gene apxIVA","year":2001,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":151,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Actinobacillus pleuropneumoniae; Biology; Primer (cosmetics); Polymerase chain reaction; Serotype; Microbiology; genomic DNA; Genetics; Gene; DNA; Nested polymerase chain reaction; Molecular biology","retraction":null,"screen_n_in":null,"score":{"opus":0.0245314439405057,"gpt":0.2587963699766762,"spread":0.2342649260361705,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000314847,0.0001622494,0.0001908866,0.0001431522,0.0002819169,0.00001537983,0.0001669173,0.0001944665,0.0004308271],"category_scores_gemma":[0.00007289893,0.0001217267,0.00007601808,0.0001908598,0.0004063294,0.00004368646,0.00008454641,0.0002243013,0.000197477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003760442,"about_ca_system_score_gemma":0.00002705315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001035851,"about_ca_topic_score_gemma":0.000008594781,"domain_scores_codex":[0.9985781,0.0004791423,0.0002760092,0.0003352219,0.0000141432,0.0003173678],"domain_scores_gemma":[0.9991825,0.000236958,0.0001277016,0.000355756,0.00007159293,0.00002553936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000391569,0.0001614568,0.0001435461,0.00001378192,0.00004469142,0.000005700665,0.00002957037,0.000005569314,0.9953853,0.00003330221,0.0007685442,0.003016924],"study_design_scores_gemma":[0.0005836129,0.0009048504,0.0007899149,0.00001132149,0.0000204621,0.0007388837,0.00004280516,0.00003200308,0.9440923,0.00001804296,0.05262971,0.0001361177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972579,0.000628544,0.0006973568,0.000457535,0.0003246262,0.0002793718,0.000182433,0.00004162782,0.0001305822],"genre_scores_gemma":[0.9988141,0.0002087179,0.00000553814,0.0001654865,0.00001697888,0.00003240124,0.000141864,0.0000148882,0.0006000373],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05186117,"threshold_uncertainty_score":0.496387,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2738344444","doi":"10.1016/j.vetmic.2017.07.013","title":"Prevalence and antimicrobial susceptibility of Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni isolated from the lower respiratory tract of healthy feedlot cattle and those diagnosed with bovine respiratory disease","year":2017,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":150,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Alberta Health Services; University of Calgary","funders":"Alberta Livestock and Meat Agency","keywords":"Bovine respiratory disease; Pasteurella multocida; Feedlot; Enrofloxacin; Oxytetracycline; Biology; Florfenicol; Microbiology; Ceftiofur; Veterinary medicine; Antibiotic resistance; Antimicrobial; Pasteurella; Pasteurellaceae; Broth microdilution; Bacteria; Antibiotics; Animal science; Medicine; Minimum inhibitory concentration; Ciprofloxacin; Haemophilus influenzae","retraction":null,"screen_n_in":null,"score":{"opus":0.03929510636702046,"gpt":0.3004975264096405,"spread":0.2612024200426201,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0004931993,0.0003249794,0.0005607585,0.0001025241,0.0006605986,0.00003866148,0.0003455191,0.0002969926,0.0001585132],"category_scores_gemma":[0.0002029194,0.0002380278,0.00008252657,0.0000617987,0.003736541,0.0001405717,0.000504801,0.0003918747,0.000009097259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003748874,"about_ca_system_score_gemma":0.000202596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001224943,"about_ca_topic_score_gemma":0.0002335994,"domain_scores_codex":[0.9976159,0.0006687054,0.0005020222,0.0007225293,0.00002751971,0.0004633716],"domain_scores_gemma":[0.9978371,0.0004945986,0.00041593,0.000975655,0.0001519198,0.0001247852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.008102291,0.0006118733,0.08611758,0.0003014971,0.0001303397,0.00004397986,0.0002581366,0.000001032492,0.902867,0.00002494105,0.0007500361,0.0007913472],"study_design_scores_gemma":[0.007046076,0.0129644,0.9488559,0.0005448645,0.0003127586,0.000354198,0.0001295471,0.000004840358,0.02238098,0.00004697543,0.006751101,0.0006083079],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845246,0.01283301,0.00001121128,0.0003597082,0.0002303004,0.0007250119,0.00127559,0.00002320759,0.00001734929],"genre_scores_gemma":[0.9986759,0.0007852378,0.00003453996,0.0002837508,0.00003856994,0.00002075837,0.0000555652,0.00002772413,0.0000779876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.880486,"threshold_uncertainty_score":0.9989747,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010748114","doi":"10.1016/j.vetmic.2003.10.008","title":"Porcine circovirus-2 and concurrent infections in the field","year":2003,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":150,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Porcine circovirus; Virology; Circovirus; Field (mathematics); Computational biology; Virus","retraction":null,"screen_n_in":null,"score":{"opus":0.09645035453301873,"gpt":0.3429305253402451,"spread":0.2464801708072264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002135649,0.0002592029,0.000620898,0.00003472375,0.0002153032,0.000022697,0.0001919993,0.0002518503,0.0001899337],"category_scores_gemma":[0.00006191738,0.00008146989,0.000156971,0.0003323894,0.0001340943,0.00002800165,0.0001447268,0.000363088,0.00006297795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003025926,"about_ca_system_score_gemma":0.00001061538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001100691,"about_ca_topic_score_gemma":0.0002583146,"domain_scores_codex":[0.9986017,0.0004809713,0.0003117252,0.0003336052,0.00002115306,0.0002508246],"domain_scores_gemma":[0.9987844,0.0009953796,0.0001168341,0.00006666857,0.00001508637,0.00002165025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003365119,0.0001197003,0.0000934998,0.0003951445,0.00004505792,0.00002731953,0.00003220817,1.652728e-8,0.001664873,0.0002481649,0.003445568,0.9939251],"study_design_scores_gemma":[0.00004056324,0.00130769,0.00006250233,0.0002849321,0.00005575725,0.001629,0.00002964523,2.755158e-8,0.000001009888,0.0000145629,0.9963977,0.0001765654],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006186183,0.9919258,7.680255e-7,0.0001464074,0.0003371293,0.0004429476,0.00009441032,0.00002510433,0.000841288],"genre_scores_gemma":[0.002959709,0.9962239,0.000004255088,0.0004253215,0.0001151824,0.0001278256,0.00007780777,0.000001376298,0.00006457158],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9937485,"threshold_uncertainty_score":0.3322246,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1990749155","doi":"10.1016/j.vetmic.2007.06.026","title":"Cytokine gene expression in chicken cecal tonsils following treatment with probiotics and Salmonella infection","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":144,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Waterloo; University of Guelph","funders":"","keywords":"Salmonella; Biology; Salmonella enterica; Microbiology; Serotype; Immune system; Salmonella infection; Gene expression; Probiotic; Bacteria; Gene; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.02764164849476963,"gpt":0.2528515215582295,"spread":0.2252098730634599,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003050956,0.0002156852,0.0003283055,0.00003622567,0.0001017556,0.00001173677,0.00007627685,0.0002330089,0.00002567512],"category_scores_gemma":[0.00001105685,0.00008355794,0.00006332967,0.0001693774,0.00008955214,0.00005703518,0.00007478276,0.0001091918,0.000008243404],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006778898,"about_ca_system_score_gemma":0.000006454695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002342908,"about_ca_topic_score_gemma":0.0006056233,"domain_scores_codex":[0.9986767,0.0001572595,0.0002774754,0.0004282252,0.00002558527,0.0004347485],"domain_scores_gemma":[0.9995566,0.0002006145,0.00008153058,0.00006835245,0.00001432379,0.00007856775],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003426467,0.0001025149,0.0938561,0.00000342882,0.00001392571,0.0001295402,0.00006589173,0.000002333579,0.8949496,0.000003155171,0.0000102979,0.01052055],"study_design_scores_gemma":[0.001173767,0.01228891,0.6321073,0.00006398278,0.00002746018,0.002441042,0.0001055983,0.000008774723,0.3322582,0.00006338008,0.01896869,0.0004928772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989166,0.0003002864,0.00003193003,0.0001379456,0.0001609304,0.0002692223,0.00001750766,0.00005001786,0.0001155946],"genre_scores_gemma":[0.9986053,0.0001623501,0.0007980849,0.0001161785,0.0001237486,0.0000111425,0.0001348363,0.000002203556,0.00004622014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5626914,"threshold_uncertainty_score":0.3407394,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999225385","doi":"10.1016/j.vetmic.2005.10.015","title":"Live attenuated vaccine-based control of necrotic enteritis of broiler chickens","year":2005,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Virulence; Biology; Clostridium perfringens; Microbiology; Virology; Attenuated vaccine; Immunity; Immunogen; Immunization; Broiler; Vaccination; Toxin; Immune system; Antibody; Immunology; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02247804584054389,"gpt":0.2852979950537136,"spread":0.2628199492131696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001578838,0.0002127852,0.000691289,0.0002349897,0.00003442416,0.000003621929,0.0001786656,0.000198102,0.001287265],"category_scores_gemma":[0.00008491189,0.0001924347,0.0002244421,0.0002025876,0.0001966409,0.00002881851,0.00006114833,0.0002406799,0.0001112188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007699909,"about_ca_system_score_gemma":0.0001589712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009688723,"about_ca_topic_score_gemma":0.00001090164,"domain_scores_codex":[0.9984419,0.0001384878,0.0005815693,0.0003291446,0.00008975092,0.0004190889],"domain_scores_gemma":[0.9988905,0.0001504165,0.0001698562,0.0004237454,0.000253731,0.0001117886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002446488,0.0005622907,0.002187555,0.0002255649,0.000147758,0.00009319055,0.00007853044,0.00002350566,0.9915297,0.000005073014,0.0009038295,0.001796528],"study_design_scores_gemma":[0.007737278,0.006652664,0.003524416,0.0002395441,0.0001192725,0.001158499,0.00006047371,0.0003760041,0.9707357,0.000001242725,0.009196905,0.0001979793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967242,0.0007526545,0.00007135959,0.001249397,0.00009926359,0.0004922585,0.0003286291,0.00003499855,0.0002471771],"genre_scores_gemma":[0.9987551,0.00009050964,0.0002800085,0.0003206304,0.0001258829,0.00002003087,0.0001752819,0.00002950436,0.0002030508],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02079397,"threshold_uncertainty_score":0.9996257,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032368248","doi":"10.1016/j.vetmic.2003.12.010","title":"Serological relationship between cattle exposed to Brucella abortus, Yersinia enterocolitica O:9 and Escherichia coli O157:H7","year":2004,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":137,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Yersinia enterocolitica; Biology; Escherichia coli; Brucellaceae; Microbiology; Brucellosis; Immunoassay; Serology; Brucella; Antibody; Virology; Bacteria; Brucella melitensis; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.1371642160750221,"gpt":0.3520158958114225,"spread":0.2148516797364004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005313304,0.0006007717,0.0009343943,0.0002325535,0.0003244526,0.00003658721,0.0004434144,0.0007539422,0.0002307715],"category_scores_gemma":[0.0003525126,0.0005724323,0.000177731,0.000262879,0.0005287693,0.0001037633,0.0005360516,0.0005187685,0.001231366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003926885,"about_ca_system_score_gemma":0.00009495713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000216855,"about_ca_topic_score_gemma":0.00003147644,"domain_scores_codex":[0.9958492,0.0008775321,0.0008672822,0.001217042,0.00007351665,0.00111542],"domain_scores_gemma":[0.9970436,0.00147728,0.000211213,0.0007269951,0.00007249873,0.0004684673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001589457,0.0006871928,0.2420896,0.0001198456,0.0002907141,0.0009070997,0.001079003,0.00004775576,0.7472494,0.001674892,0.003928471,0.0003366501],"study_design_scores_gemma":[0.003949354,0.01750445,0.9185908,0.0001290183,0.000188924,0.002951056,0.0002168348,0.00000237938,0.007370383,0.001734368,0.04625818,0.001104296],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923881,0.0004820999,0.0001896428,0.004194861,0.0004724426,0.001167997,0.0003279539,0.0002699642,0.0005069836],"genre_scores_gemma":[0.9881824,0.00004902342,0.008175272,0.002527218,0.0002398003,0.000305532,0.000307607,0.00007401854,0.0001391269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.739879,"threshold_uncertainty_score":0.9996727,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020540295","doi":"10.1016/j.vetmic.2011.05.023","title":"The Ins and Outs of siderophore mediated iron uptake by extra-intestinal pathogenic Escherichia coli","year":2011,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Siderophore; Aerobactin; Biology; Microbiology; Virulence; Enterobactin; Secretion; Innate immune system; Bacteria; Escherichia coli; Receptor; Enterobacteriaceae; Biochemistry; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.04516833377710443,"gpt":0.3055292988994656,"spread":0.2603609651223612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004081258,0.0005716376,0.001088873,0.00006118479,0.0001918132,0.00001814052,0.0006468741,0.0006202301,0.00002543491],"category_scores_gemma":[0.0003679089,0.0003915261,0.0002901514,0.0001576852,0.001012015,0.000002933517,0.001000894,0.0004470631,0.00002074783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003748604,"about_ca_system_score_gemma":0.0003869058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000232897,"about_ca_topic_score_gemma":0.00002389458,"domain_scores_codex":[0.9972413,0.0006726452,0.000695131,0.0007236165,0.00005711036,0.0006101954],"domain_scores_gemma":[0.9984786,0.0002058326,0.0004464217,0.0006308584,0.0001217025,0.0001165973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001251018,0.00007885748,0.000007907748,0.001917113,0.0003472093,0.00002433447,0.00004215918,1.841597e-8,0.9221516,0.00001128306,0.003150147,0.07214433],"study_design_scores_gemma":[0.0002423956,0.002255954,0.00001889079,0.0004376534,0.0001489889,0.0003876858,0.00002974266,4.762562e-7,0.000648384,0.000004903954,0.9954561,0.000368836],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06078632,0.9376234,0.000007210926,0.00002223319,0.0001912988,0.0006527985,0.0004939327,0.00001510824,0.0002076864],"genre_scores_gemma":[0.002621033,0.9951935,0.000292901,0.00003967068,0.00009265129,0.0001874635,0.0007188473,0.00007479426,0.0007791354],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9923059,"threshold_uncertainty_score":0.9998537,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1024821521","doi":"10.1016/j.vetmic.2015.07.031","title":"The nasopharyngeal microbiota of feedlot cattle that develop bovine respiratory disease","year":2015,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency","keywords":"Bovine respiratory disease; Biology; Feedlot; Firmicutes; Veterinary medicine; Bacterial phyla; Microbiology; Pasteurella multocida; UniFrac; Actinobacteria; Beef cattle; Paratuberculosis; Animal science; 16S ribosomal RNA; Bacteria; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.08209418499273541,"gpt":0.3106282900732833,"spread":0.2285341050805479,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008055588,0.000321062,0.0004116136,0.0001952849,0.0004895177,0.00002996954,0.000634805,0.0002776484,0.0003916253],"category_scores_gemma":[0.0002613285,0.0002359802,0.000171768,0.0003525387,0.001265323,0.000101495,0.0005981212,0.0003720964,0.000944422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001326366,"about_ca_system_score_gemma":0.0007129017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002186354,"about_ca_topic_score_gemma":0.00003836381,"domain_scores_codex":[0.9973649,0.0007597868,0.000501888,0.0005070471,0.00003063589,0.000835744],"domain_scores_gemma":[0.9982365,0.0002900109,0.000203474,0.0007295453,0.0003637723,0.0001766925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001716894,0.0002262659,0.001029767,0.00004031754,0.0001740653,0.0000244246,0.0001204228,0.000008459049,0.9486619,0.0003753652,0.04644306,0.001179069],"study_design_scores_gemma":[0.002523476,0.001541992,0.003579441,0.00005517934,0.00006726958,0.0007107354,0.0002601975,9.941862e-7,0.1672369,0.0001258133,0.8234414,0.0004566067],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9781009,0.01820284,0.0000408835,0.0005358864,0.00158858,0.0004276353,0.000480439,0.00008803466,0.0005348238],"genre_scores_gemma":[0.9965115,0.0001976764,0.00005453972,0.0002760929,0.00007270015,0.00005035703,0.0003668831,0.00003862822,0.002431617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.781425,"threshold_uncertainty_score":0.9998335,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095920479","doi":"10.1016/j.vetmic.2009.06.014","title":"Unexpected sequence types in livestock associated methicillin-resistant Staphylococcus aureus (MRSA): MRSA ST9 and a single locus variant of ST9 in pig farming in China","year":2009,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":132,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of Agriculture; Government of British Columbia","funders":"Santen","keywords":"Multilocus sequence typing; Biology; Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Veterinary medicine; Livestock; Microbiology; Genotype; Gene; Genetics; Ecology; Medicine; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.03292995048967003,"gpt":0.2934907501805196,"spread":0.2605607996908496,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006963274,0.0004482217,0.001216058,0.0008460986,0.00005212364,0.00001713015,0.0002737573,0.0005449665,0.00003615659],"category_scores_gemma":[0.0005645382,0.0004370387,0.0001042675,0.001144174,0.0004193459,0.0001091276,0.0001411283,0.0007807075,0.000004667168],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005444261,"about_ca_system_score_gemma":0.0002790937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00116511,"about_ca_topic_score_gemma":0.001496146,"domain_scores_codex":[0.9966036,0.0005675924,0.001105309,0.0007820828,0.000116546,0.0008248387],"domain_scores_gemma":[0.998631,0.0003131331,0.0003851542,0.0004389018,0.0001191414,0.0001126811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002058367,0.0008755507,0.004258386,0.0001252823,0.00005192618,0.002409792,0.001484604,0.00008868352,0.9873826,0.00009890817,0.00003091875,0.001134966],"study_design_scores_gemma":[0.02081744,0.02655421,0.5934975,0.007035942,0.0002515696,0.0003662183,0.001676404,0.0006474811,0.3417014,0.001672722,0.002997209,0.002782007],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958084,0.002146215,0.00006573202,0.0005151024,0.0001135717,0.0008953172,0.0001496873,0.00005608933,0.0002499135],"genre_scores_gemma":[0.9977049,0.0002013539,0.001603544,0.0002468219,0.00002619813,0.00001929056,0.00007519625,0.00003774613,0.00008495381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6456813,"threshold_uncertainty_score":0.9998081,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045860509","doi":"10.1016/j.vetmic.2007.03.028","title":"Isolation and characterization of nine bacteriophages that lyse O149 enterotoxigenic Escherichia coli","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":131,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University; Public Health Agency of Canada; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbiology; Virology; Enterotoxigenic Escherichia coli; Serotype; Escherichia coli; Gene; Genetics; Enterotoxin","retraction":null,"screen_n_in":null,"score":{"opus":0.01560222242191741,"gpt":0.2445326558833283,"spread":0.2289304334614109,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001800565,0.000170621,0.0002082794,0.00006585458,0.00009031867,0.00001654338,0.0001248545,0.0001319703,0.002196273],"category_scores_gemma":[0.000005974193,0.000165384,0.00005583273,0.0001216277,0.0002167063,0.000257982,0.0002169622,0.0001087462,0.00009026314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006178354,"about_ca_system_score_gemma":0.000004721376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001110887,"about_ca_topic_score_gemma":0.00003640302,"domain_scores_codex":[0.9990317,0.00006715758,0.0003047254,0.0002978558,0.00002954458,0.0002690778],"domain_scores_gemma":[0.9995165,0.00002667968,0.0002005607,0.0001825195,0.00001145243,0.00006229952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001682456,0.00007012255,0.002626309,0.0000140728,0.00001875608,0.00001068949,0.0002644403,5.128836e-7,0.9942723,0.000002208759,0.00003208695,0.002520269],"study_design_scores_gemma":[0.0003169791,0.0005095771,0.4379113,0.00001774833,0.00001608949,0.0003362916,0.00003679131,0.00001330906,0.5461772,0.000002129813,0.01450093,0.0001615765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972126,0.00002847941,0.001651807,0.0000662508,0.0003634345,0.0002607708,0.00006227834,0.00003195918,0.0003223774],"genre_scores_gemma":[0.9974913,0.00008153193,0.001264737,0.0001935899,0.00004065208,0.000008189674,0.0001603151,0.0000177569,0.0007419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4480951,"threshold_uncertainty_score":0.9987159,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097255057","doi":"10.1016/j.vetmic.2007.06.015","title":"Methicillin-resistant staphylococcal colonization in dogs entering a veterinary teaching hospital","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":130,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"OVC Pet Trust","keywords":"Staphylococcus pseudintermedius; Staphylococcus; Colonization; Microbiology; Methicillin-resistant Staphylococcus aureus; Veterinary medicine; Staphylococcal infections; Biology; Staphylococcus aureus; Coagulase; Meticillin; Staphylococcus intermedius; Micrococcaceae; Medicine; Antibiotics; Bacteria; Antibacterial agent","retraction":null,"screen_n_in":null,"score":{"opus":0.02521471364095158,"gpt":0.311243418690509,"spread":0.2860287050495575,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001280325,0.0004304205,0.0007044324,0.000545066,0.0001728185,0.00002884969,0.0002755733,0.0004510649,0.00009144048],"category_scores_gemma":[0.0002409561,0.0004315909,0.0001989616,0.0003741775,0.0003516996,0.0001434194,0.0002900649,0.0009021204,0.00005990175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005033551,"about_ca_system_score_gemma":0.0001161587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001617492,"about_ca_topic_score_gemma":0.00006531941,"domain_scores_codex":[0.9969835,0.0002620844,0.000889801,0.0007646036,0.0001183187,0.0009817258],"domain_scores_gemma":[0.9987123,0.0002792984,0.0002307611,0.0004885171,0.000112393,0.0001767481],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003287961,0.0004293404,0.006171987,0.0001869918,0.00006354157,0.002791589,0.0007948946,0.000008232581,0.9838679,0.0001840273,0.0001934518,0.002020021],"study_design_scores_gemma":[0.0196413,0.05413596,0.2667213,0.003685377,0.0003317982,0.006820281,0.003077522,0.0002612011,0.2435166,0.0003043407,0.3971341,0.004370313],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928725,0.0004027671,0.003480762,0.0004061142,0.0007116075,0.000850827,0.00005633835,0.0001593393,0.001059713],"genre_scores_gemma":[0.9911139,0.00005941038,0.007683272,0.0005051179,0.0001915722,0.0000273612,0.000140028,0.00007555656,0.0002037949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7403514,"threshold_uncertainty_score":0.9998136,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117099571","doi":"10.1016/j.vetmic.2005.11.013","title":"Wildlife reservoirs for bovine tuberculosis (Mycobacterium bovis) in Canada: Strategies for management and research","year":2005,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":129,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Parks Canada; Government of Northwest Territories","funders":"","keywords":"Wildlife; Mycobacterium bovis; Context (archaeology); Bovine tuberculosis; National park; Wildlife management; Biology; Ungulate; Chronic wasting disease; Tuberculosis; Bison bison; Environmental resource management; Environmental planning; Ecology; Geography; Disease; Habitat; Mycobacterium tuberculosis; Scrapie; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.154385593998811,"gpt":0.3585344751424849,"spread":0.2041488811436739,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009677686,0.0004418117,0.001324644,0.0001100694,0.0002255795,0.00005320731,0.0005704213,0.0003251012,0.00008138881],"category_scores_gemma":[0.00005398822,0.0001845761,0.0002477134,0.0003128925,0.0001597014,0.00009523183,0.000583122,0.0002646467,0.000009644052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003791321,"about_ca_system_score_gemma":0.0001603163,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.06527361,"about_ca_topic_score_gemma":0.3384039,"domain_scores_codex":[0.996694,0.0005751595,0.0007181505,0.0009358886,0.00006342626,0.001013335],"domain_scores_gemma":[0.9983066,0.001192162,0.0001769624,0.0001382938,0.00006499545,0.0001210067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005332959,0.00009311466,0.00006958405,0.009687356,0.0002633491,0.00005947367,0.00001430781,0.000001081718,0.0004962402,0.0009197638,0.08103301,0.9068294],"study_design_scores_gemma":[0.0001892104,0.001227625,0.0003823669,0.0006954801,0.0001190892,0.0000354666,0.0002648903,0.000008023279,1.803533e-7,0.0001779187,0.996524,0.0003757977],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01938216,0.9738144,0.000003732676,0.001343087,0.0002524091,0.003288826,0.001643267,0.00003234274,0.0002398202],"genre_scores_gemma":[0.001250507,0.9935921,0.0003031928,0.000374355,0.0003997145,0.001339096,0.002223491,0.000008043164,0.0005094488],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9154909,"threshold_uncertainty_score":0.9409508,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2087206035","doi":"10.1016/j.vetmic.2007.01.029","title":"Monitoring of Usutu virus activity and spread by using dead bird surveillance in Austria, 2003–2005","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Bundesministerium für Gesundheit; Hungarian Scientific Research Fund; Public Health Agency of Canada","keywords":"Biology; Virus; Virology; Zoology; Veterinary medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.029228260196447,"gpt":0.3119909540504606,"spread":0.2827626938540136,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003025283,0.0001606321,0.0004164901,0.0001145491,0.00003061779,0.000004725081,0.00006837693,0.0001596668,0.00002786713],"category_scores_gemma":[0.00005177289,0.0001545933,0.00004657152,0.0001687063,0.0001101836,0.00004692821,0.00006893649,0.0001466598,0.000003643337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007644723,"about_ca_system_score_gemma":0.00005581558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001103523,"about_ca_topic_score_gemma":0.00008000025,"domain_scores_codex":[0.9989111,0.00008436987,0.0002720979,0.0002991316,0.00003599532,0.000397318],"domain_scores_gemma":[0.9994477,0.00008286453,0.0001120657,0.0002102011,0.0000490407,0.00009815089],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001356315,0.0001332497,0.1430263,0.00005507974,0.00003297911,0.0001149275,0.00002166306,0.000001076242,0.8442855,0.000001307496,0.00005839612,0.01091322],"study_design_scores_gemma":[0.006496947,0.002425264,0.5978456,0.0003246285,0.00009252168,0.001355069,0.000151046,0.0002027734,0.37808,0.000004585952,0.01249695,0.0005246025],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956707,0.003499094,0.0001251994,0.00004104535,0.0002772037,0.0002537247,0.00007827568,0.0000274323,0.00002736339],"genre_scores_gemma":[0.9992161,0.0002356178,0.0003022313,0.00003808402,0.0001159281,0.000004008136,0.000009336142,0.00002176788,0.0000569363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4662055,"threshold_uncertainty_score":0.6304131,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974527107","doi":"10.1016/j.vetmic.2004.05.008","title":"Cloning and purification of the Streptococcus suis serotype 2 glyceraldehyde-3-phosphate dehydrogenase and its involvement as an adhesin","year":2004,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":124,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Streptococcus suis; Glyceraldehyde 3-phosphate dehydrogenase; Biology; Microbiology; Bacterial adhesin; Streptococcus pyogenes; Molecular biology; Peptide sequence; Dehydrogenase; Escherichia coli; Bacteria; Gene; Biochemistry; Virulence; Enzyme; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03015083900312848,"gpt":0.293988878580236,"spread":0.2638380395771075,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006933009,0.0001437024,0.0001970988,0.00005663787,0.0001162789,0.000008562053,0.00005141231,0.0001005488,0.00004913475],"category_scores_gemma":[0.00001549083,0.0001018739,0.00004325175,0.0001075216,0.0001249138,0.00006469864,0.00007809796,0.00008785913,0.000009994959],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005531765,"about_ca_system_score_gemma":0.00005193196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002057778,"about_ca_topic_score_gemma":0.00002944375,"domain_scores_codex":[0.999244,0.00005588727,0.0002101215,0.000289703,0.00002818873,0.000172134],"domain_scores_gemma":[0.9995127,0.00001800405,0.00009748144,0.0002402254,0.00005155369,0.00008002074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001977739,0.000246231,0.03354855,0.00005033845,0.00008656847,0.0000280308,0.0002036153,0.000005864752,0.9643723,0.0004046584,0.000005506639,0.000850588],"study_design_scores_gemma":[0.003025813,0.005367811,0.07613957,0.0001340906,0.000120119,0.001235392,0.0001045689,0.0000163745,0.9115943,0.0002922554,0.001816385,0.000153271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979246,0.0008367231,0.000004111635,0.0002738194,0.00009055861,0.0007527748,0.00003202859,0.0000267718,0.00005855662],"genre_scores_gemma":[0.9992509,0.0001475059,0.000221735,0.0001479082,0.00002258926,0.00006516718,0.00005313914,0.00001316651,0.00007791794],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05277792,"threshold_uncertainty_score":0.4154299,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1998603944","doi":"10.1016/j.vetmic.2004.03.020","title":"In vitro growth inhibition of major mastitis pathogens by Staphylococcus chromogenes originating from teat apices of dairy heifers","year":2004,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":121,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Streptococcus dysgalactiae; Streptococcus uberis; Biology; Mastitis; Microbiology; Streptococcus agalactiae; Staphylococcus aureus; Streptococcus; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01640764605935501,"gpt":0.2275323749811565,"spread":0.2111247289218015,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001672316,0.0001730841,0.0003512771,0.00003537038,0.00006144113,0.000006948579,0.0002032827,0.0001771459,0.0002820934],"category_scores_gemma":[0.00003439943,0.0000924544,0.00009270356,0.000218523,0.0002310373,0.0001266628,0.0001317044,0.0001069952,0.000007869417],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004183749,"about_ca_system_score_gemma":0.00001384104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002673348,"about_ca_topic_score_gemma":0.0003313006,"domain_scores_codex":[0.99871,0.0001757295,0.0004441406,0.0003429572,0.00005695135,0.0002702491],"domain_scores_gemma":[0.9994737,0.0001487351,0.000210443,0.00007162154,0.00005322734,0.00004230085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001541307,0.0001533343,0.0003709962,0.00004093277,0.00001544784,0.00003630246,0.0001749904,0.00000377546,0.9969518,0.000115184,0.0001295666,0.00185352],"study_design_scores_gemma":[0.0005751554,0.0009719399,0.001839483,0.00008383228,0.000009438209,0.00003929323,0.0002863678,0.000001017532,0.9918895,0.0008716746,0.003234916,0.0001974331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954118,0.0007198949,0.0000240723,0.0003243787,0.0001935913,0.0001727549,0.003050732,0.00002194386,0.00008086793],"genre_scores_gemma":[0.9979889,0.0001537501,0.000765516,0.0001433849,0.0000888468,0.00001510737,0.0008249498,0.000001836617,0.00001771421],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00506237,"threshold_uncertainty_score":0.404132,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013908528","doi":"10.1016/j.vetmic.2008.09.010","title":"Prevalence and herd-level risk factors for intramammary infection with coagulase-negative staphylococci in Dutch dairy herds","year":2008,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":121,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Herd; Staphylococcus epidermidis; Udder; Coagulase; Veterinary medicine; Staphylococcus; Biology; Animal science; Mastitis; Medicine; Microbiology; Staphylococcus aureus; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.05833386184265332,"gpt":0.2499808876672358,"spread":0.1916470258245825,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002332349,0.0002038322,0.0002536462,0.00002770748,0.0002645045,0.00001229109,0.0001289696,0.0001774835,0.00009700486],"category_scores_gemma":[0.00008698983,0.00009001788,0.00005069989,0.0001674088,0.0003407191,0.0001353534,0.00009908849,0.000185969,0.00000388137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003566369,"about_ca_system_score_gemma":0.00001504317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00115654,"about_ca_topic_score_gemma":0.001522409,"domain_scores_codex":[0.9986634,0.0003147382,0.0002374585,0.0004296088,0.00003764519,0.0003171884],"domain_scores_gemma":[0.9991339,0.0005687688,0.0001198537,0.00006827196,0.00004725478,0.00006187676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000979868,0.0002358793,0.3715972,0.0001215942,0.00004482441,0.00004663785,0.001009682,0.00001977107,0.6188424,0.00007956432,0.0004322646,0.006590241],"study_design_scores_gemma":[0.0007355599,0.004995849,0.9772241,0.0000637388,0.00001446205,0.0004285437,0.0002299131,0.00001887686,0.007893095,0.0002847763,0.007737031,0.0003740201],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982122,0.000122533,0.00006489924,0.00007908657,0.0001342329,0.0005200879,0.0007656125,0.00004759998,0.00005375498],"genre_scores_gemma":[0.9983334,0.0006376249,0.0005206522,0.00007221298,0.00007175896,0.00006410328,0.0001317441,0.00000212241,0.0001663822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6109493,"threshold_uncertainty_score":0.3670823,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031510655","doi":"10.1016/j.vetmic.2008.02.018","title":"Antimicrobial resistance and genetic characterization of fluoroquinolone resistance of Pseudomonas aeruginosa isolated from canine infections","year":2008,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"U.S. Food and Drug Administration","keywords":"Microbiology; Cefotaxime; Biology; Clavulanic acid; Cefpodoxime; Ceftazidime; Piperacillin; Cefepime; Imipenem; Antibiotic resistance; Amoxicillin; Pseudomonas aeruginosa; Antibiotics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01037315402225229,"gpt":0.2201074677495703,"spread":0.209734313727318,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004955126,0.0002205643,0.0003868739,0.00008203589,0.0000931554,0.000004573518,0.000187852,0.000272067,0.00002801612],"category_scores_gemma":[0.00003426507,0.0002372677,0.00007169953,0.0001401778,0.0006315431,0.000009200397,0.000145897,0.00008616399,0.000002785052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001569383,"about_ca_system_score_gemma":0.00007630033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005155334,"about_ca_topic_score_gemma":0.00009779616,"domain_scores_codex":[0.9985911,0.0001456711,0.0005142068,0.0004628227,0.00003786382,0.0002483691],"domain_scores_gemma":[0.9989966,0.00002321891,0.00036177,0.0004344588,0.0001387309,0.00004523651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000757041,0.0001002746,0.01228027,0.00008536084,0.00007979282,0.00003164349,0.000075793,0.000001958504,0.9862571,0.000008318527,0.0002906112,0.00003176979],"study_design_scores_gemma":[0.0008223802,0.0006390871,0.130001,0.0001260386,0.00003150535,0.0004351268,0.000008842697,0.000003094415,0.8612301,0.000008755914,0.006410483,0.0002835821],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967554,0.000737261,0.001255091,0.00006141731,0.0002221691,0.0002172169,0.0006851383,0.00001580638,0.00005048487],"genre_scores_gemma":[0.9935659,0.001816321,0.003201184,0.00004720679,0.00008437884,0.000005117195,0.000798252,0.00002800864,0.0004535899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1250271,"threshold_uncertainty_score":0.9675496,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2007005493","doi":"10.1016/j.vetmic.2013.01.015","title":"Fungal diseases of horses","year":2013,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":116,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"McGill University","keywords":"Pathognomonic; Blastomycosis; Aspergillosis; Cryptococcosis; Mycosis; Biology; Dermatology; Zygomycosis; Epidemiology; Amphotericin B; Intensive care medicine; Disease; Medicine; Pathology; Antifungal; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.1047099306264469,"gpt":0.378683016342938,"spread":0.2739730857164911,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008767495,0.0007266126,0.002751558,0.0004034648,0.00009752435,0.00001743389,0.0005976144,0.0007937909,0.003595934],"category_scores_gemma":[0.00005800102,0.0005829641,0.001176371,0.0002233003,0.0004082681,0.00007923035,0.0005927449,0.0003660274,0.001804603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000108525,"about_ca_system_score_gemma":0.000273559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000615501,"about_ca_topic_score_gemma":0.000001118009,"domain_scores_codex":[0.9967924,0.0007816892,0.0009809134,0.0007374442,0.00004646147,0.0006610706],"domain_scores_gemma":[0.9979201,0.0003663377,0.0006823578,0.0007853291,0.00009607591,0.0001498333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003133696,0.0009764068,0.00002270979,0.04631112,0.001630841,0.00211077,0.00004490063,2.712972e-7,0.006153804,0.00053919,0.02457957,0.917317],"study_design_scores_gemma":[0.0002060752,0.004317753,0.000008204093,0.001523751,0.0010088,0.01350733,0.000007418839,2.795363e-7,0.00000446219,0.00003149936,0.9788334,0.0005510074],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004521677,0.9894614,0.000004176169,0.000003849222,0.001506581,0.001102331,0.002395028,0.00015255,0.0008524706],"genre_scores_gemma":[0.00195849,0.9954371,0.00008665656,0.00005134297,0.0003628925,0.0004235718,0.001082136,0.0001189762,0.0004788649],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9542539,"threshold_uncertainty_score":0.9996622,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3173917781","doi":"10.1016/j.vetmic.2021.109168","title":"The jigsaw of PRRSV virulence","year":2021,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; Ministerio de Economía y Competitividad","keywords":"Jigsaw; Biology; Virulence; Virology; Microbiology; Genetics; Gene; Mathematics education; Psychology","retraction":null,"screen_n_in":null,"score":{"opus":0.1136062868300687,"gpt":0.3277606047229693,"spread":0.2141543178929005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001926116,0.0002601976,0.0009130367,0.00001119484,0.0003518809,0.00001787638,0.0004745838,0.0002516237,0.0001971104],"category_scores_gemma":[0.00007001196,0.00007241814,0.0004385657,0.0003103553,0.0003806253,0.00002115647,0.000532208,0.0002252434,0.0001024527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003364471,"about_ca_system_score_gemma":0.00002559211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000288474,"about_ca_topic_score_gemma":0.00003353249,"domain_scores_codex":[0.99848,0.0004104833,0.0004445516,0.0003467082,0.0000312121,0.0002870047],"domain_scores_gemma":[0.9986457,0.0008456518,0.0002996863,0.0001167042,0.00006775578,0.00002447478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004388125,0.00003127882,0.000001316074,0.0003388928,0.00009978274,0.00001155481,0.000006749935,9.181751e-9,0.02160392,0.000207428,0.0009172857,0.9767774],"study_design_scores_gemma":[0.00001303715,0.0005948055,0.000006378585,0.0008737253,0.00007418888,0.0005519901,0.00004309392,1.998436e-8,0.00003792254,0.000005798736,0.9976397,0.0001593445],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001151684,0.9970157,2.520496e-7,0.00003143533,0.0003693533,0.0002485177,0.0002682671,0.00002925207,0.0008855734],"genre_scores_gemma":[0.0002915023,0.9989336,0.00002379212,0.0000207043,0.0001515638,0.00006267651,0.0001239529,0.000001681831,0.0003905455],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9967224,"threshold_uncertainty_score":0.2953126,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2030065761","doi":"10.1016/j.vetmic.2007.11.031","title":"Evaluation of prevalence and risk factors for methicillin-resistant Staphylococcus aureus colonization in veterinary personnel attending an international equine veterinary conference","year":2007,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":115,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Medicine; Hygiene; Veterinary medicine; Colonization; Methicillin-resistant Staphylococcus aureus; Odds ratio; Staphylococcus aureus; Staphylococcal infections; Population; Infection control; Personal hygiene; Internal medicine; Environmental health; Microbiology; Biology; Intensive care medicine; Family medicine; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.1008789197842596,"gpt":0.3718789412016358,"spread":0.2710000214173762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003397577,0.0003579132,0.0005862401,0.0005111134,0.0001374908,0.00002184982,0.0002888947,0.0003516764,0.0001046866],"category_scores_gemma":[0.0008929735,0.0003511146,0.0001159563,0.0002526981,0.0004493002,0.0002682396,0.0001753612,0.0003164003,0.000001783102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004111778,"about_ca_system_score_gemma":0.0002088323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001341053,"about_ca_topic_score_gemma":0.00006348045,"domain_scores_codex":[0.9971321,0.0005224362,0.0008125108,0.0007444617,0.0002620947,0.0005264449],"domain_scores_gemma":[0.9975673,0.0005523293,0.0004999879,0.0004010414,0.000850328,0.000129017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004554489,0.0002730312,0.02091286,0.0003732245,0.0001408448,0.00006600633,0.001771533,0.00005884444,0.9694458,0.00006553361,0.00001219657,0.002325593],"study_design_scores_gemma":[0.01967373,0.08776274,0.6686628,0.002471093,0.001873648,0.0007149457,0.008114295,0.01168051,0.1906859,0.0004526578,0.005644047,0.002263601],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993869,0.0005304569,0.002740482,0.00005316697,0.0004921395,0.001524101,0.0006544359,0.00004674419,0.00008949296],"genre_scores_gemma":[0.9944662,0.000462834,0.004447861,0.00004232304,0.00009569845,0.00005889741,0.000348283,0.0000445859,0.00003332994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7787599,"threshold_uncertainty_score":0.9998941,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060473757","doi":"10.1016/j.vetmic.2014.01.017","title":"Extended-spectrum β-lactamase, carbapenemase and AmpC producing Enterobacteriaceae in companion animals","year":2014,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Calgary Laboratory Services; University of Calgary; University of Saskatchewan","funders":"","keywords":"Biology; Enterobacteriaceae; Microbiology; Transmission (telecommunications); Escherichia coli; Colonization; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02454247884377721,"gpt":0.3017246542998915,"spread":0.2771821754561143,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004354351,0.0007456544,0.001821676,0.0002174446,0.00007336166,0.00005451135,0.0004572133,0.0007982997,0.00004295059],"category_scores_gemma":[0.00006333381,0.0006780328,0.0002579259,0.0001344371,0.0002890802,0.000006433521,0.0006320964,0.0003384868,0.00003542586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008138698,"about_ca_system_score_gemma":0.0001255732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000220383,"about_ca_topic_score_gemma":0.00004096963,"domain_scores_codex":[0.9962153,0.0007525387,0.0008985139,0.001423366,0.00004143099,0.0006688917],"domain_scores_gemma":[0.9984387,0.00005122152,0.0004929003,0.0008841821,0.00002832558,0.0001047298],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004988804,0.0002900323,0.001149637,0.01917569,0.0004374582,0.0003081723,0.00007030821,6.244459e-7,0.8873724,0.0000893075,0.000969711,0.08963773],"study_design_scores_gemma":[0.0004238092,0.001119186,0.0007206574,0.002908456,0.0001031238,0.002605824,0.00001002644,5.06756e-7,0.0005904722,0.000007409561,0.9907993,0.000711195],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.3240464,0.6745827,0.0000233296,0.00001317833,0.0004119511,0.0006804623,0.0001328553,0.0000210842,0.00008801533],"genre_scores_gemma":[0.05652353,0.9408914,0.0004338395,0.00005364284,0.0003446082,0.00004822206,0.001412742,0.000112789,0.0001792613],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9898296,"threshold_uncertainty_score":0.9995671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3132934346","doi":"10.1016/j.vetmic.2021.109021","title":"Proposal of Actinobacillus pleuropneumoniae serovar 19, and reformulation of previous multiplex PCRs for capsule-specific typing of all known serovars","year":2021,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":113,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Actinobacillus pleuropneumoniae; Serotype; Biology; Locus (genetics); Typing; Biovar; Microbiology; Multiplex polymerase chain reaction; Gene; Actinobacillus; Genotype; Genetics; Virology; Polymerase chain reaction; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.05837966603188589,"gpt":0.3079947502138621,"spread":0.2496150841819762,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002898101,0.0002016845,0.0005411945,0.0001890824,0.00009770079,0.000005037507,0.0001492643,0.0002545617,0.000200164],"category_scores_gemma":[0.0001083644,0.0001870472,0.0001654012,0.0001853603,0.0004402332,0.00007281889,0.0002374378,0.00016687,0.00001000636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000445004,"about_ca_system_score_gemma":0.0001786061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001511978,"about_ca_topic_score_gemma":0.0000285178,"domain_scores_codex":[0.9982305,0.0003377783,0.0006249656,0.0004082855,0.00001491546,0.0003835181],"domain_scores_gemma":[0.9987578,0.0001677213,0.0003168008,0.0003567846,0.0003624337,0.00003841458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007221773,0.0002927643,0.0002778263,0.0005847922,0.0002634733,0.000008291002,0.0003324038,0.00002360628,0.99443,0.0003655697,0.0002607682,0.002438332],"study_design_scores_gemma":[0.002032165,0.001471282,0.001065567,0.00009403597,0.00005943278,0.001244371,0.0001788919,0.00001303145,0.9607168,0.00006159412,0.03286369,0.0001991056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941819,0.003890005,0.0002234121,0.00007828357,0.0003170759,0.0005476819,0.0006752997,0.00002309655,0.00006319885],"genre_scores_gemma":[0.9973386,0.0006920748,0.0009936008,0.00002019178,0.00001850129,0.00002305006,0.0006129967,0.00002334967,0.0002776622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03371317,"threshold_uncertainty_score":0.7627563,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095726375","doi":"10.1016/j.vetmic.2014.02.035","title":"The resistance tsunami, antimicrobial stewardship, and the golden age of microbiology","year":2014,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Antibiotics; Antibiotic resistance; Antimicrobial stewardship; Stewardship (theology); Biology; Identification (biology); Antibiotic Stewardship; Intensive care medicine; Biotechnology; Microbiology; Medicine; Political science; Ecology; Law","retraction":null,"screen_n_in":null,"score":{"opus":0.01845637563555599,"gpt":0.2837962930573028,"spread":0.2653399174217468,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001169019,0.0007088804,0.002012309,0.00007576284,0.0003109548,0.00005815962,0.00142962,0.001002459,0.000009577532],"category_scores_gemma":[0.0002231632,0.0003971241,0.0006288846,0.0001395471,0.003947109,0.000003602309,0.0009947146,0.000438624,0.00002224812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003543493,"about_ca_system_score_gemma":0.0001923416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001005735,"about_ca_topic_score_gemma":0.00006948102,"domain_scores_codex":[0.9951944,0.001991031,0.001170199,0.0009363107,0.00004051312,0.0006675017],"domain_scores_gemma":[0.9968763,0.0005341783,0.0009895753,0.001444264,0.0000952878,0.00006037832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00213224,0.00008927234,0.00001197431,0.01082354,0.00150052,0.00007420894,0.00008027722,3.252324e-7,0.9174942,0.001239596,0.01950706,0.04704675],"study_design_scores_gemma":[0.0007602817,0.0003580749,0.000004157619,0.001247454,0.0002707332,0.001376496,0.00001295377,8.896776e-8,0.0007822504,0.00002602329,0.9947328,0.0004287046],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01172199,0.9852788,0.00006642396,0.0001174434,0.0009347901,0.001065794,0.0004418778,0.00001677271,0.0003561116],"genre_scores_gemma":[0.003514386,0.9915565,0.0003449288,0.0001437682,0.0003725697,0.00004620988,0.001204679,0.0000940489,0.002722929],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9752257,"threshold_uncertainty_score":0.9998481,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137545051","doi":"10.1016/j.vetmic.2012.11.018","title":"Metagenomic analysis of the canine oral cavity as revealed by high-throughput pyrosequencing of the 16S rRNA gene","year":2012,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":111,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Fusobacteria; Pyrosequencing; Bacteroidetes; Capnocytophaga; Proteobacteria; Firmicutes; Metagenomics; Microbiome; Fusobacterium; Microbiology; UniFrac; Human Microbiome Project; Phylum; Bacterial phyla; Genetics; 16S ribosomal RNA; Bacteroides; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.03094257210438501,"gpt":0.3060762218010243,"spread":0.2751336496966393,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007064035,0.0002365934,0.0007417619,0.0001276446,0.0002128043,0.000009366469,0.0009066098,0.0003189606,0.0013837],"category_scores_gemma":[0.00009109173,0.0001476762,0.0004446809,0.0007484657,0.0008580508,0.00009110585,0.0007603584,0.0003768824,0.00007415487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001291248,"about_ca_system_score_gemma":0.0001001846,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006700344,"about_ca_topic_score_gemma":0.0008470122,"domain_scores_codex":[0.9972468,0.001201521,0.0005695827,0.0003453172,0.00006795995,0.0005688407],"domain_scores_gemma":[0.9984267,0.0001292261,0.0003951446,0.000889732,0.00009958353,0.00005962987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001183244,0.00008913824,0.07577889,0.00002913269,0.0009511104,0.000008693884,0.0001601259,0.00001988533,0.9206005,0.00005405498,0.002093583,0.00009651336],"study_design_scores_gemma":[0.0006134649,0.0003211456,0.2396763,0.00002039049,0.0007286512,0.0008890352,0.00005554212,0.000005337367,0.7461077,0.00002008432,0.01131053,0.000251796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994189,0.001888817,0.00001794578,0.0001500109,0.001062813,0.0002778556,0.002299063,0.00001453236,0.000100008],"genre_scores_gemma":[0.9970991,0.00006055802,0.0001897458,0.0001847515,0.00005766576,0.00001106555,0.0002290156,0.00002069534,0.002147413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1744928,"threshold_uncertainty_score":0.9999141,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997340779","doi":"10.1016/j.vetmic.2010.11.026","title":"Multiple novel and prevalent astroviruses in pigs","year":2010,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Cegep de Saint Hyacinthe; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Biology; Astrovirus; Phylogenetic tree; Monophyly; Zoology; Genetic diversity; Phylogenetics; Virology; Veterinary medicine; Virus; Population; Genetics; Rotavirus; Gene; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.04479765815400746,"gpt":0.3253718936620363,"spread":0.2805742355080288,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002296008,0.00012493,0.0003075464,0.0001330438,0.00002870451,0.000004973945,0.00008163755,0.0001397923,0.0001459292],"category_scores_gemma":[0.0003060015,0.0001065588,0.00004339361,0.00005075995,0.0002822269,0.00004169809,0.0001627365,0.0004145054,0.00003511272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001817603,"about_ca_system_score_gemma":0.00002678671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009876343,"about_ca_topic_score_gemma":0.000148747,"domain_scores_codex":[0.9989319,0.00007679615,0.000232694,0.0003014189,0.0000218732,0.0004352989],"domain_scores_gemma":[0.9995712,0.00005315113,0.00003484574,0.0001902788,0.00002345783,0.0001270627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005726992,0.000122016,0.1620002,0.00004313161,0.0000116227,0.0001028445,0.00002173161,2.750458e-7,0.8354718,0.00001293445,0.0003383863,0.001302361],"study_design_scores_gemma":[0.007355639,0.009512848,0.8520387,0.0001161028,0.00001601983,0.02019618,0.00006477263,0.0001750408,0.006829756,0.00002886031,0.1034021,0.0002639657],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983215,0.0001516654,0.00007210724,0.0008254919,0.0001955582,0.0002449497,0.00006191545,0.00002618741,0.0001006454],"genre_scores_gemma":[0.9940881,0.0001211414,0.004863407,0.0006087106,0.0000861088,0.00002834737,0.00005587577,0.00001259709,0.0001357721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8286421,"threshold_uncertainty_score":0.4345341,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051632571","doi":"10.1016/j.vetmic.2004.07.008","title":"Evaluation of a monoclonal antibody-based enzyme-linked immunosorbent assay for detection of Campylobacter fetus in bovine preputial washing and vaginal mucus samples","year":2004,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Preputial gland; Biology; Campylobacter fetus; Mucus; Monoclonal antibody; Fetus; Campylobacter; Microbiology; Vagina; Antibody; Bacteria; Immunology; Pregnancy; Endocrinology; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.06415146166468023,"gpt":0.3639419500742616,"spread":0.2997904884095813,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00179966,0.0001461211,0.0004820036,0.0002426372,0.00003300744,0.000003651952,0.0000746189,0.0001552376,0.00002099396],"category_scores_gemma":[0.0005687702,0.0001323033,0.00009573279,0.00008726461,0.0002186952,0.00005567258,0.00006207395,0.0001603391,7.833245e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001767697,"about_ca_system_score_gemma":0.0001996352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005734008,"about_ca_topic_score_gemma":0.0001211262,"domain_scores_codex":[0.9982234,0.0005100654,0.0005145874,0.0003080895,0.00009404461,0.0003498659],"domain_scores_gemma":[0.9992546,0.00009046792,0.0001727493,0.0001701956,0.0002544048,0.0000576202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005039491,0.0002151428,0.003969428,0.0001724151,0.00007038622,0.00001038566,0.00007780014,0.0002349951,0.9826032,0.000006524778,0.000005731496,0.007594496],"study_design_scores_gemma":[0.04157506,0.05562437,0.2969835,0.001097943,0.0003885835,0.003381761,0.0002013686,0.009002113,0.5889734,0.0008379364,0.001467893,0.0004661051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899332,0.0005816765,0.008154536,0.0002982505,0.000143017,0.0007591186,0.000110476,0.00001143444,0.000008304728],"genre_scores_gemma":[0.9952846,0.00005767901,0.00413035,0.00006008285,0.0000542066,0.00005991163,0.0003372757,0.00001299623,0.000002855336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3936298,"threshold_uncertainty_score":0.5395172,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1994713409","doi":"10.1016/j.vetmic.2012.04.032","title":"Variation of bacterial communities and expression of Toll-like receptor genes in the rumen of steers differing in susceptibility to subacute ruminal acidosis","year":2012,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":109,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Rumen; Temperature gradient gel electrophoresis; Acidosis; TLR2; Microbiology; Gene; 16S ribosomal RNA; Bacteria; Gene expression; Animal science; Food science; Receptor; Biochemistry; Genetics; Endocrinology; Innate immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.03666505666452417,"gpt":0.2468904249102128,"spread":0.2102253682456886,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000311464,0.0000867772,0.0002496525,0.00003436223,0.00002734723,0.000002539352,0.0001562129,0.00008412133,0.000116297],"category_scores_gemma":[0.00001369131,0.00003732381,0.00003311587,0.0001188785,0.0001527609,0.00007000667,0.0001312944,0.00005499858,7.607929e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001153866,"about_ca_system_score_gemma":0.000002875068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003645219,"about_ca_topic_score_gemma":0.0001702566,"domain_scores_codex":[0.9989426,0.0004877026,0.0002788978,0.0001003792,0.00002600123,0.0001643974],"domain_scores_gemma":[0.9995138,0.0002668789,0.0001101419,0.00006300963,0.0000251883,0.00002100163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005305459,0.0002007536,0.03022554,0.00002951831,0.000002632641,2.101495e-7,0.001684409,4.643992e-7,0.9660618,0.00001849124,0.00001041629,0.001235217],"study_design_scores_gemma":[0.000229672,0.001445351,0.8075552,0.000044679,0.00000321269,0.0000135095,0.002443953,7.881142e-7,0.1875645,0.00001649411,0.0006095451,0.00007305123],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993413,0.0001171449,0.000001260926,0.0001237201,0.00009948031,0.0001788117,0.0001219133,0.000002973258,0.00001339806],"genre_scores_gemma":[0.9996101,0.00009253994,0.0001310801,0.00002610996,0.00002784999,0.00001097257,0.00009810972,6.326535e-7,0.000002560081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7784973,"threshold_uncertainty_score":0.1522021,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160977252","doi":"10.1016/j.vetmic.2008.10.021","title":"Evaluation of bacteriophages for prevention and treatment of diarrhea due to experimental enterotoxigenic Escherichia coli O149 infection of pigs","year":2008,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":108,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Diarrhea; Enterotoxigenic Escherichia coli; Feces; Biology; Microbiology; Escherichia coli; Virology; Immunology; Internal medicine; Medicine; Enterotoxin","retraction":null,"screen_n_in":null,"score":{"opus":0.05283499554515386,"gpt":0.3184851912554629,"spread":0.265650195710309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001400991,0.0001223726,0.0002559534,0.00005748796,0.00005452786,0.00000216554,0.00005146683,0.00007128654,0.0005317096],"category_scores_gemma":[0.00001172258,0.0001160718,0.00009667299,0.00007579679,0.0001597956,0.00009825049,0.00006652092,0.00002094819,0.000006807297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001515595,"about_ca_system_score_gemma":0.00001606193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004461156,"about_ca_topic_score_gemma":0.000070644,"domain_scores_codex":[0.9991531,0.0001442094,0.0003156555,0.000214969,0.00004405194,0.000127981],"domain_scores_gemma":[0.9995733,0.00002861938,0.0001902969,0.000135621,0.00003795134,0.00003415479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002348668,0.0004954119,0.0008437196,0.00001500122,0.00004561496,8.103037e-7,0.0007958286,0.00002953834,0.9941126,7.632639e-7,0.00003652831,0.003389286],"study_design_scores_gemma":[0.0009047709,0.006619,0.09399167,0.00002133832,0.00005550468,0.000168953,0.0000330685,0.00003731629,0.8967362,0.00000355178,0.001341139,0.00008749435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984004,0.0001200559,0.0001705971,0.00001287181,0.0001939698,0.0009621092,0.00009076285,0.00000689074,0.00004237945],"genre_scores_gemma":[0.9983611,0.00007567125,0.0012409,0.000009038081,0.00001608038,0.0001631828,0.00004016575,0.000009948096,0.00008394036],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09737644,"threshold_uncertainty_score":0.5821848,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964565857","doi":"10.1016/j.vetmic.2014.11.016","title":"Re-emerging of porcine respiratory and reproductive syndrome virus (lineage 3) and increased pathogenicity after genomic recombination with vaccine variant","year":2014,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":107,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Lineage (genetic); Virology; Genotyping; Porcine reproductive and respiratory syndrome virus; Virus; Phylogenetic tree; Genetics; Genotype; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01509795935770606,"gpt":0.2134161055003818,"spread":0.1983181461426757,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004092541,0.000142734,0.0002649729,0.0000302284,0.0001464544,0.000006950594,0.00006044233,0.00007640847,0.00004950766],"category_scores_gemma":[0.00005366594,0.00006333739,0.00002457799,0.0001240455,0.0001306408,0.00006428701,0.0001826251,0.00008498186,0.0000028887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001808388,"about_ca_system_score_gemma":0.000003363256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000260808,"about_ca_topic_score_gemma":0.0002354407,"domain_scores_codex":[0.9989613,0.0002136336,0.0002160106,0.0004121959,0.00002243568,0.0001744439],"domain_scores_gemma":[0.9995781,0.0001126716,0.0001349819,0.0000795512,0.00006107975,0.00003362152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004655152,0.00004159029,0.013802,0.00001433109,0.00003007378,0.00001969891,0.0000646347,4.507047e-7,0.9835706,0.00002267532,0.00001645038,0.001951989],"study_design_scores_gemma":[0.000535587,0.008226694,0.9630159,0.00003592162,0.00004546167,0.0009137724,0.0001374789,0.000009512417,0.02075645,0.00006536539,0.00600856,0.000249302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989908,0.0004698901,0.00001302298,0.0001527535,0.00004640876,0.0001809274,0.00005784151,0.00002851855,0.00005986936],"genre_scores_gemma":[0.9994639,0.00008040149,0.0002184341,0.000122307,0.00005940797,0.00001996634,0.00001839451,0.000001916248,0.00001525151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9628142,"threshold_uncertainty_score":0.2582824,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2042034272","doi":"10.1016/s0378-1135(01)00368-6","title":"An insight into the epidemiology of dolphin morbillivirus worldwide","year":2001,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"North Pacific Marine Science Organization; Fisheries and Oceans Canada","funders":"","keywords":"Porpoise; Phocoena; Bottlenose dolphin; Delphinus delphis; Biology; Fishery; Cetacea; Bycatch; Zoology; Harbour; Fishing","retraction":null,"screen_n_in":null,"score":{"opus":0.07177018243471663,"gpt":0.3019378117379818,"spread":0.2301676293032652,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004657586,0.000166186,0.0003263882,0.00002215567,0.0003188454,0.000003738786,0.000400403,0.0001311845,0.0003906192],"category_scores_gemma":[0.0001143753,0.00005297221,0.0001072126,0.0003045252,0.0005574005,0.00007226647,0.0001970325,0.0001544328,0.00008299165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002424644,"about_ca_system_score_gemma":0.000004903355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001640014,"about_ca_topic_score_gemma":0.001166829,"domain_scores_codex":[0.998376,0.0005935722,0.0003603444,0.0003240909,0.00002262209,0.0003234223],"domain_scores_gemma":[0.9988304,0.0007870494,0.0001514572,0.0001322391,0.00005496095,0.00004392215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001089946,0.00008825579,0.03412364,0.000002466702,0.00002581124,0.000009225917,0.0002867576,0.00000682701,0.9492809,0.0004506041,0.0002124109,0.01540409],"study_design_scores_gemma":[0.0001968511,0.006191747,0.3412813,0.00001943339,0.00002858014,0.0009068483,0.0004614101,0.00002630506,0.01007228,0.001693305,0.6387243,0.0003976395],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958708,0.001509293,0.00001446314,0.001290842,0.0002196171,0.0001489325,0.0000203685,0.00005905962,0.0008665698],"genre_scores_gemma":[0.9979611,0.0005874078,0.0002306057,0.0008514818,0.0001835887,0.00002585704,0.00003388915,0.00000134176,0.0001247205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9392086,"threshold_uncertainty_score":0.4277006,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105866599","doi":"10.1016/j.vetmic.2005.07.010","title":"Evaluation of three ELISAs for Mycobacterium avium subsp. paratuberculosis using tissue and fecal culture as comparison standards","year":2005,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Paratuberculosis; Feces; Biology; Mycobacterium; Microbiology; Veterinary medicine; Bacteria; Genetics; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.0991681232709301,"gpt":0.4230393153650306,"spread":0.3238711920941005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001125825,0.0002170215,0.0005421304,0.0001270977,0.00009406782,0.00002088935,0.00009223628,0.0002660715,0.0004039265],"category_scores_gemma":[0.0003178214,0.0001832256,0.00009413537,0.0001163359,0.0001909037,0.0001101557,0.00009794156,0.000162557,0.00001265636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002428091,"about_ca_system_score_gemma":0.0003036982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007807621,"about_ca_topic_score_gemma":0.00004918045,"domain_scores_codex":[0.9983528,0.0002263203,0.0003944456,0.0003819497,0.0002407865,0.0004037169],"domain_scores_gemma":[0.9984725,0.0001080393,0.0001290459,0.0002683655,0.0008655356,0.000156546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001466096,0.0002030113,0.004399962,0.0002119705,0.0001401142,0.00000700157,0.0002717569,0.00001204198,0.980567,0.00002017436,0.003369262,0.009331629],"study_design_scores_gemma":[0.007848994,0.01481078,0.01239053,0.0003405419,0.001364661,0.00245167,0.0002352916,0.00367511,0.7078496,0.0001406277,0.2483312,0.0005610523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936261,0.003606019,0.0002663672,0.0004487416,0.0001872234,0.001052008,0.0005541397,0.00002639055,0.0002330474],"genre_scores_gemma":[0.9955822,0.000215207,0.003267807,0.0001366755,0.0003058731,0.00007690024,0.000352505,0.00002429208,0.00003856264],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2727174,"threshold_uncertainty_score":0.7471724,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073299375","doi":"10.1016/j.vetmic.2008.09.053","title":"Efficacy of vaccination against staphylococcal mastitis: A review and new data","year":2008,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":102,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Mastitis; Vaccination; Immunology; Microbiology; Staphylococcal infections; Virology; Bacteria; Staphylococcus aureus; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.1954944070295019,"gpt":0.3487438063603847,"spread":0.1532493993308827,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002286395,0.0003698472,0.001582889,0.0000313309,0.00009132655,0.00001134625,0.0009390613,0.0003676111,0.0005405382],"category_scores_gemma":[0.0001535083,0.0001580969,0.0002039918,0.0002805976,0.000118322,0.00009440022,0.0009868168,0.0002653195,0.00004196464],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002303325,"about_ca_system_score_gemma":0.00006696428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005804207,"about_ca_topic_score_gemma":0.00003637151,"domain_scores_codex":[0.9977075,0.0004924255,0.0007550943,0.0007114397,0.00004880907,0.0002847644],"domain_scores_gemma":[0.9986602,0.0004262197,0.0004525031,0.0003212256,0.0000361093,0.0001037494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000102488,0.00005136124,4.435304e-7,0.006915876,0.00005674914,0.00002316372,0.000006068121,1.347278e-8,0.0009603937,0.0000198675,0.01857688,0.973379],"study_design_scores_gemma":[0.0001333162,0.0004773752,0.00002939422,0.00701313,0.0001946885,0.001066722,0.000002307111,1.845983e-7,0.000002180492,0.000006410805,0.9907802,0.0002940444],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000513027,0.9961041,0.000003125948,0.000111402,0.0001819344,0.0008263038,0.002025269,0.00003867342,0.0001961344],"genre_scores_gemma":[0.00001696288,0.9920608,0.0002074499,0.0002224051,0.000213272,0.00001650678,0.007055373,0.000003152705,0.000204104],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9730849,"threshold_uncertainty_score":0.6447004,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2000645927","doi":"10.1016/j.vetmic.2009.07.001","title":"Identification of changes in the composition of ileal bacterial microbiota of broiler chickens infected with Clostridium perfringens","year":2009,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Nutreco (Canada); Agriculture and Agri-Food Canada","funders":"","keywords":"Clostridium perfringens; Biology; Microbiology; Bacitracin; Broiler; Temperature gradient gel electrophoresis; Clostridium; Clostridiaceae; Bacteria; Population; Antibiotics; Food science; Toxin; 16S ribosomal RNA; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0221915710109258,"gpt":0.2860281786625457,"spread":0.2638366076516199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000315932,0.0001929151,0.0005323402,0.0003366069,0.00003566803,0.000005977168,0.0002217875,0.0001831322,0.0000841207],"category_scores_gemma":[0.00003168589,0.0001397523,0.000096945,0.0004781095,0.0003368181,0.00003394541,0.00005325501,0.0002467844,0.000004180364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005385455,"about_ca_system_score_gemma":0.0001097549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008178163,"about_ca_topic_score_gemma":0.00002019165,"domain_scores_codex":[0.9984695,0.0002227928,0.0006051774,0.0002882745,0.0001151332,0.0002991355],"domain_scores_gemma":[0.9988563,0.0001059495,0.0003249409,0.0004441469,0.0002313815,0.00003728265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002763035,0.0007642931,0.0004292254,0.0002048568,0.00005371658,0.00002804272,0.0006015419,0.000006824703,0.9945346,0.00002368964,0.0001330526,0.0004571411],"study_design_scores_gemma":[0.001826832,0.006925101,0.0137336,0.0001791247,0.00006996674,0.0008765823,0.000164098,0.00001508396,0.9757484,0.000002589063,0.0003406622,0.0001179917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998059,0.0001622632,0.000007739224,0.000729407,0.0000860846,0.0006080533,0.0002363213,0.00001296851,0.00009810526],"genre_scores_gemma":[0.9992014,0.0001528025,0.00007869692,0.0000435662,0.00008782826,0.00001012989,0.0003918072,0.00001371591,0.00002008301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01878621,"threshold_uncertainty_score":0.5698934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074407100","doi":"10.1016/j.vetmic.2008.11.004","title":"Performance of API Staph ID 32 and Staph-Zym for identification of coagulase-negative staphylococci isolated from bovine milk samples","year":2008,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":100,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Microbiology; Staphylococcus; Coagulase; Staphylococcus epidermidis; rpoB; Micrococcaceae; Staphylococcus xylosus; Staphylococcus aureus; Bacteria; Antibacterial agent; Antibiotics; 16S ribosomal RNA; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0478896942877841,"gpt":0.2442976223208558,"spread":0.1964079280330717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002011546,0.0001556757,0.0003516986,0.00002685421,0.0001588837,0.000005493856,0.0002135298,0.0001442508,0.0001766987],"category_scores_gemma":[0.00006291933,0.00008094396,0.00007092503,0.000140268,0.0004242896,0.00009988935,0.0001109107,0.00007393231,0.000003584148],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001211454,"about_ca_system_score_gemma":0.00001311124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004614036,"about_ca_topic_score_gemma":0.0001321621,"domain_scores_codex":[0.9987569,0.0001524571,0.0005038309,0.0003277645,0.00004491957,0.0002141258],"domain_scores_gemma":[0.998947,0.0004625603,0.0003187515,0.0001005681,0.0001284944,0.00004265409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008477341,0.00009355474,0.002279729,0.000058814,0.0000378651,0.000001828468,0.0003273686,0.000003979522,0.9934296,0.00004659507,0.0003496023,0.00252335],"study_design_scores_gemma":[0.001531871,0.0128411,0.1707283,0.0001211765,0.00005687683,0.0001355494,0.0008432375,0.000506736,0.7892402,0.0006765963,0.02270026,0.0006181452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944742,0.0003516803,0.00007679451,0.00007751029,0.0001315594,0.0003675508,0.004475391,0.00002374282,0.0000215593],"genre_scores_gemma":[0.9977154,0.00054425,0.0006392389,0.00004961591,0.00005204292,0.00002293592,0.0008931312,0.000001798917,0.00008164597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2041894,"threshold_uncertainty_score":0.3300799,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2305427586","doi":"10.1016/j.vetmic.2016.03.020","title":"Evolution of the nasopharyngeal microbiota of beef cattle from weaning to 40 days after arrival at a feedlot","year":2016,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"Alberta Livestock and Meat Agency","keywords":"Feedlot; Weaning; Biology; Population; Bovine respiratory disease; Hypervariable region; Beef cattle; Veterinary medicine; Animal science; Microbiology; Genetics; Medicine; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01675997127250421,"gpt":0.2546043970273271,"spread":0.2378444257548229,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002166717,0.000260602,0.0004568027,0.0002022219,0.000179105,0.000005062498,0.0004940726,0.0003334986,0.002957944],"category_scores_gemma":[0.00008231313,0.0001660999,0.0002703241,0.0002565708,0.0007381307,0.00006551187,0.001003038,0.0001746351,0.0006916736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002676065,"about_ca_system_score_gemma":0.0001335624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001044583,"about_ca_topic_score_gemma":0.0001394767,"domain_scores_codex":[0.997874,0.0004851841,0.0005175067,0.0005138358,0.00002360765,0.0005858173],"domain_scores_gemma":[0.9986953,0.0002263249,0.0001989177,0.0006806472,0.0001416903,0.00005717574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001792121,0.000184818,0.003715334,0.00003149423,0.0001702929,0.000003773332,0.0002130309,0.000005394605,0.9902874,0.00007136602,0.003076605,0.0004483612],"study_design_scores_gemma":[0.001644829,0.0009220089,0.03864343,0.0002392207,0.00006502805,0.000404669,0.00005838111,2.51774e-7,0.9292959,0.00006421263,0.02838062,0.0002814479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933687,0.002021665,0.0001422373,0.0003241072,0.001101605,0.0004067823,0.0024769,0.00003250014,0.000125484],"genre_scores_gemma":[0.9982139,0.00003611071,0.0001005382,0.00008245358,0.00005735767,0.00003774029,0.00008340237,0.00002749014,0.001360994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0609915,"threshold_uncertainty_score":0.9979535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2030417566","doi":"10.1016/j.vetmic.2005.11.002","title":"Rationale and perspectives on the success of vaccination against bovine herpesvirus-1","year":2005,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Vaccination; Biology; Virology; Virus; Antigen; Immune system; Immunology; Inactivated vaccine; Attenuated vaccine; Bovine herpesvirus 1; Immunization; Viral disease; Herpesviridae","retraction":null,"screen_n_in":null,"score":{"opus":0.08772828863912906,"gpt":0.3536102533916467,"spread":0.2658819647525176,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001453454,0.0002710866,0.0008048336,0.0001905813,0.00009893446,0.000008467166,0.00008241161,0.0002390757,0.0003862306],"category_scores_gemma":[0.00004252372,0.0001614701,0.0001997052,0.000153692,0.000106796,0.0000329971,0.00006265332,0.0002412581,0.00006328052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001365173,"about_ca_system_score_gemma":0.0001067215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000843946,"about_ca_topic_score_gemma":0.000003448242,"domain_scores_codex":[0.9989054,0.0002191599,0.0003536129,0.000333702,0.00003664587,0.0001514318],"domain_scores_gemma":[0.9991439,0.0002399204,0.0002200516,0.0002932764,0.00006734346,0.00003549005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007093051,0.00032742,0.000005164629,0.00115179,0.0004063433,0.00002649791,0.0001087575,1.867875e-7,0.0002255471,0.0003510696,0.0003822645,0.996944],"study_design_scores_gemma":[0.0003723002,0.001089295,0.00002707845,0.001142766,0.0002775628,0.0007167846,0.00003772866,0.000001056673,0.0000253836,0.000003311852,0.9961857,0.0001210793],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01732489,0.9792147,0.000004429817,0.0002079572,0.0001135513,0.001059022,0.0002224889,0.00002421147,0.001828771],"genre_scores_gemma":[0.006420457,0.9922197,0.0001051395,0.00009647197,0.0001481128,0.0001201161,0.0002998386,0.00002867873,0.0005615218],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.996823,"threshold_uncertainty_score":0.6584558,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2806938803","doi":"10.1016/j.vetmic.2018.06.007","title":"Distinct bacterial metacommunities inhabit the upper and lower respiratory tracts of healthy feedlot cattle and those diagnosed with bronchopneumonia","year":2018,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Alberta Health Services; University of Calgary","funders":"Genome Alberta; Alberta Livestock and Meat Agency","keywords":"Biology; Microbiology; Pasteurella multocida; Moraxella; Lactobacillus casei; Feedlot; Bovine respiratory disease; Veterinary medicine; Bacteria; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.03642646339125134,"gpt":0.2952636550225634,"spread":0.2588371916313121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.000389145,0.0002347839,0.0003743532,0.0001356844,0.0005014776,0.00002771621,0.0002047693,0.0002156298,0.0006498725],"category_scores_gemma":[0.0000592189,0.0001517025,0.00005448261,0.0001225059,0.002827725,0.0000945808,0.0004160198,0.0003121012,0.0000506332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002559092,"about_ca_system_score_gemma":0.0001130379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005843167,"about_ca_topic_score_gemma":0.0003817286,"domain_scores_codex":[0.9981122,0.0007842956,0.0003040053,0.0003281622,0.00001474035,0.0004565851],"domain_scores_gemma":[0.9988502,0.0004311944,0.0001286873,0.0004157784,0.0001215506,0.00005263845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001970708,0.0002044311,0.001933204,0.00005413617,0.0001507788,0.000008097986,0.0008155848,8.050672e-8,0.9918386,0.00009834274,0.001142032,0.001783996],"study_design_scores_gemma":[0.008944929,0.03627298,0.2157613,0.0003260447,0.0003043539,0.005204864,0.002133988,7.795701e-7,0.1750638,0.000108603,0.5547252,0.001153153],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947983,0.003676031,0.000007744697,0.0002346029,0.0004322122,0.0003519038,0.000249316,0.00003196082,0.0002179452],"genre_scores_gemma":[0.9990027,0.0002777409,0.00003910099,0.0002994168,0.00007712243,0.0000385489,0.00008009213,0.00002303054,0.000162223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8167748,"threshold_uncertainty_score":0.999886,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}