{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":113,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":113,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"a87f2fe2d0d7","filters":{"venue":"genesis"}},"results":[{"id":"W1963742875","doi":"10.1002/gene.10092","title":"Expression of Cre recombinase in the developing mouse limb bud driven by a <i>Prxl</i> enhancer","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1039,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Sunnybrook Health Science Centre; Mount Sinai Hospital","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Dental and Craniofacial Research; University of Alabama","keywords":"Limb bud; Cre recombinase; Biology; Mesenchyme; Enhancer; Transgene; Limb development; Genetically modified mouse; Reporter gene; Cell biology; Molecular biology; Gene expression; Genetics; Gene; Mesenchymal stem cell","retraction":null,"screen_n_in":null,"score":{"opus":0.01100798310570987,"gpt":0.2256621303805343,"spread":0.2146541472748244,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001146018,0.00009494214,0.0000939071,0.00002650506,0.00005514696,0.000005221108,0.0001597688,0.0001311316,0.00003591382],"category_scores_gemma":[0.00001569741,0.00007239755,0.00004123174,0.00009305095,0.00004103296,0.000003456583,0.00005718569,0.00003598909,0.00001135469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000105293,"about_ca_system_score_gemma":0.0000149955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009353236,"about_ca_topic_score_gemma":0.0000220112,"domain_scores_codex":[0.9993339,0.00008468002,0.0001723357,0.0001994656,0.00006941491,0.0001402341],"domain_scores_gemma":[0.9996963,0.0000123055,0.00006545019,0.0001826367,0.00002472889,0.00001863682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002447309,0.00005029849,0.004460493,0.000009863668,0.000008198054,6.509051e-7,0.000172382,0.000009262745,0.9836513,0.000003982549,0.00704214,0.004566915],"study_design_scores_gemma":[0.0002576788,0.00006771945,0.006961955,0.00001282304,0.000003882329,0.000003770545,0.00009656541,0.000008197619,0.9819097,0.00001555391,0.01055522,0.000106929],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997162,0.00163187,0.0002972868,0.0002683965,0.00005404079,0.0001208345,0.000009049922,0.000004765876,0.0004517049],"genre_scores_gemma":[0.9967818,0.0009206873,0.0008948692,0.0002834708,0.00002919011,0.00003328483,0.00008604533,0.00000826266,0.0009624289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004459986,"threshold_uncertainty_score":0.2952286,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032284140","doi":"10.1002/1526-968x(200011/12)28:3/4<147::aid-gene90>3.0.co;2-g","title":"Z/EG, a double reporter mouse line that expresses enhanced green fluorescent protein upon cre-mediated excision","year":2000,"lang":"en","type":"article","venue":"genesis","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":832,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital; Sunnybrook Health Science Centre","funders":"Medical Research Council; Cancer Care Ontario","keywords":"Cre recombinase; Green fluorescent protein; Biology; Transgene; Molecular biology; Recombinase; lac operon; Embryonic stem cell; Reporter gene; Cre-Lox recombination; Genetically modified mouse; Gene; Cell culture; Gene knockin; Cell biology; Genetics; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.01192882819464259,"gpt":0.2719604343695559,"spread":0.2600316061749133,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001122281,0.0002211503,0.0001795683,0.00004549302,0.00006581466,0.00002851193,0.0001803859,0.0001745412,0.0003672026],"category_scores_gemma":[0.00001859572,0.0002049609,0.000105534,0.00009134355,0.00002247274,0.000005255255,0.00007212401,0.00005636791,0.00005079746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000125454,"about_ca_system_score_gemma":0.00003288797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001353478,"about_ca_topic_score_gemma":0.00006934266,"domain_scores_codex":[0.9987194,0.00002495988,0.0002672251,0.0004670452,0.0001964681,0.0003249338],"domain_scores_gemma":[0.999186,0.000005461079,0.00005928998,0.0005678629,0.00005828633,0.0001230411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002693136,0.00006054839,0.00009047507,0.00003360083,0.00003233756,0.000009014093,0.00007503713,0.000807196,0.9820532,3.45464e-7,0.0006719141,0.01589706],"study_design_scores_gemma":[0.0007408051,0.0001464085,0.000858584,0.00002300797,0.00001711683,0.00000959446,0.00002922555,0.0001473188,0.9705526,0.00000428864,0.02721209,0.0002589789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933057,0.001320895,0.0043556,0.00008618752,0.00007200924,0.0004054448,0.00001703202,0.00005483212,0.0003822875],"genre_scores_gemma":[0.991239,0.0005630864,0.001243361,0.00007847678,0.0002918726,0.0001236964,0.0001940293,0.00004708268,0.006219376],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02654018,"threshold_uncertainty_score":0.8358062,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2039854579","doi":"10.1002/gene.20095","title":"Mouse in red: Red fluorescent protein expression in mouse ES cells, embryos, and adult animals","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":318,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Green fluorescent protein; Biology; Recombinase; Transgene; Molecular biology; Embryo; Genetically modified mouse; Cell culture; Cre recombinase; Cell biology; Gene; Genetics; Recombination","retraction":null,"screen_n_in":null,"score":{"opus":0.007016326365671655,"gpt":0.2138284851533837,"spread":0.2068121587877121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001267838,0.0001573608,0.0001425609,0.00007793819,0.00004979744,0.00001834352,0.0001006272,0.0001776451,0.000005229406],"category_scores_gemma":[0.00003838929,0.0001456182,0.0000356491,0.0001036116,0.00005696897,0.000003580843,0.0001141734,0.00007129581,0.00000399758],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002595984,"about_ca_system_score_gemma":0.00003983694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001637259,"about_ca_topic_score_gemma":0.0002571124,"domain_scores_codex":[0.9988366,0.0000486047,0.000236628,0.0005302696,0.0001062231,0.0002416258],"domain_scores_gemma":[0.99951,0.00000129725,0.00006303377,0.000300645,0.00006057605,0.00006443536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002048553,0.0001060699,0.001701823,0.00002826959,0.000005052905,0.000004877198,0.00008115351,0.0002407443,0.9963772,0.00001469206,0.0001072176,0.001128054],"study_design_scores_gemma":[0.0007433886,0.0002695678,0.009999455,0.00003041444,0.000003483751,0.000003700377,0.0001289671,0.00001528917,0.9875042,0.00003923313,0.001074515,0.000187807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976754,0.001493175,0.0001051612,0.0002483719,0.00004144141,0.0003677373,0.000008509382,0.00001077636,0.00004944081],"genre_scores_gemma":[0.9948379,0.001404665,0.002955304,0.00004548836,0.0001538862,0.00004836582,0.00001995093,0.00002575252,0.0005087189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008873012,"threshold_uncertainty_score":0.5938138,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076877143","doi":"10.1002/dvg.20450","title":"Additional molecular support for the new chordate phylogeny","year":2008,"lang":"en","type":"article","venue":"genesis","topic":"Marine Ecology and Invasive Species","field":"Environmental Science","cited_by":232,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Centre National de la Recherche Scientifique","keywords":"Chordate; Biology; Sister group; Monophyly; Phylogenetic tree; Evolutionary biology; Phylogenetics; Lineage (genetic); Zoology; Vertebrate; Clade; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0139066683750395,"gpt":0.2049186018685124,"spread":0.1910119334934729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00004439917,0.00006345951,0.00005535045,0.00000819049,0.0002435055,0.000004163627,0.0001746074,0.0000315138,0.4014498],"category_scores_gemma":[0.00006217453,0.00004626192,0.00006426394,0.00006349887,0.0001540329,0.00004380264,0.0000879135,0.00002872259,0.001456474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002171998,"about_ca_system_score_gemma":0.00002357662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005156941,"about_ca_topic_score_gemma":0.00006580925,"domain_scores_codex":[0.9995203,0.00001055386,0.00007318615,0.0001452793,0.00009504725,0.000155659],"domain_scores_gemma":[0.9996549,0.0001204901,0.00002645617,0.0001480624,0.000004905494,0.00004514068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006467377,0.00001163998,0.00347722,5.985016e-7,0.00001264202,0.000005625554,0.00002389532,0.00011256,0.002149948,0.0001344966,0.9905684,0.003496508],"study_design_scores_gemma":[0.00007697481,0.00002641516,0.3029124,2.303485e-7,0.00000694811,0.00001674542,0.000006272076,0.00002888324,0.002304522,0.0003869016,0.6941822,0.00005150382],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5291575,0.0004964711,0.02402249,0.01810482,0.001813529,0.002676345,0.007084841,0.0002680353,0.416376],"genre_scores_gemma":[0.587239,0.0004759161,0.02756597,0.02057811,0.00132709,0.001092405,0.002304432,0.00007452922,0.3593425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3999933,"threshold_uncertainty_score":0.999321,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2169425378","doi":"10.1002/gene.10175","title":"Evidence for novel fate of Flk1<sup>+</sup> progenitor: Contribution to muscle lineage","year":2003,"lang":"en","type":"article","venue":"genesis","topic":"Zebrafish Biomedical Research Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"American Heart Association; Howard Hughes Medical Institute","keywords":"Biology; Progenitor cell; Cell biology; Lineage (genetic); Haematopoiesis; Progenitor; Stem cell; Cellular differentiation; Endothelial stem cell; Transplantation; Cell fate determination; Immunology; In vitro; Genetics; Internal medicine; Transcription factor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04327940599187915,"gpt":0.3366795464716304,"spread":0.2934001404797513,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004412055,0.0001009586,0.0001254333,0.00004681089,0.0000715083,0.00001284119,0.0002203739,0.0001192358,0.00002279159],"category_scores_gemma":[0.002619203,0.00009743373,0.00009736567,0.0002136407,0.00007015239,0.000003846535,0.000067749,0.00003501793,0.00001960355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002452715,"about_ca_system_score_gemma":0.0001663999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001599215,"about_ca_topic_score_gemma":0.000007697307,"domain_scores_codex":[0.9989125,0.00003962786,0.0002213011,0.000326019,0.0001992822,0.0003012561],"domain_scores_gemma":[0.9989339,0.00007620824,0.00005335908,0.0003784541,0.0003613778,0.0001966838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005844891,0.00009111709,0.0003348721,0.00002829985,0.00002816932,1.609106e-7,0.00001350957,0.00005920048,0.9930927,0.0002689854,0.002365235,0.0036593],"study_design_scores_gemma":[0.0004215745,0.0002380262,0.001491468,0.00001786758,0.00001698643,0.000001516769,0.00002315751,0.0002186658,0.8581536,0.00002740931,0.1392854,0.0001042969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8202288,0.0008021517,0.177238,0.0004478941,0.00003405149,0.0009904517,0.0001920921,0.00001278776,0.00005375269],"genre_scores_gemma":[0.9870704,0.0001240772,0.01153831,0.0002114967,0.0001566586,0.0005754475,0.00009835669,0.0000181839,0.0002070855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1668416,"threshold_uncertainty_score":0.3973232,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2112084205","doi":"10.1002/gene.20019","title":"Transition nuclear proteins are required for normal chromatin condensation and functional sperm development","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":191,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Cancer Institute","keywords":"Protamine; Chromatin; Biology; Histone; Sperm; Cell biology; Prophase; Intracytoplasmic sperm injection; Sterility; Chromatin remodeling; Andrology; Genetics; Embryo; DNA; Gene; Biochemistry; Meiosis; In vitro fertilisation","retraction":null,"screen_n_in":null,"score":{"opus":0.02515463739779812,"gpt":0.2237974886672078,"spread":0.1986428512694097,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008110201,0.00008320966,0.0001082806,0.00005560823,0.0001369626,0.0000126671,0.00001023549,0.00006412357,0.0001066539],"category_scores_gemma":[0.00003586332,0.00007798927,0.00003632245,0.00006183219,0.00002328911,0.00007204032,0.000004643932,0.00002787098,0.00002846154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009579738,"about_ca_system_score_gemma":0.00007688964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001591899,"about_ca_topic_score_gemma":0.00001084473,"domain_scores_codex":[0.9994377,0.000006804245,0.0001400155,0.000162457,0.0001428556,0.000110132],"domain_scores_gemma":[0.9997307,0.00000970862,0.00004479158,0.00006927815,0.00008546159,0.00006005692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001324828,0.0004622006,0.004161367,0.0007503919,0.0002257051,0.00003312218,0.00349311,0.0004654673,0.9627995,0.001384152,0.0004741499,0.02442604],"study_design_scores_gemma":[0.005768409,0.0004416442,0.8983983,0.0001826422,0.0001928875,0.0002478227,0.0006436454,0.0006398566,0.09022731,0.0003127962,0.002703189,0.000241542],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9778395,0.00007818881,0.02037949,0.0008812075,0.00009793857,0.0005627375,0.000005437051,0.00006992583,0.0000855789],"genre_scores_gemma":[0.9846563,0.000005242304,0.01453244,0.0003332806,0.0001943948,0.00007093527,0.0001054469,0.00001711277,0.00008486254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8942369,"threshold_uncertainty_score":0.318031,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977144442","doi":"10.1002/dvg.20710","title":"Mechanisms that underlie co‐variation of the brain and face","year":2011,"lang":"en","type":"review","venue":"genesis","topic":"dental development and anomalies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Dental and Craniofacial Research","keywords":"Variation (astronomy); Craniofacial; Biology; Evolutionary biology; Neuroscience; Morphology (biology); Face (sociological concept); Zoology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03955856635934897,"gpt":0.2739658444581685,"spread":0.2344072780988195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000977505,0.0001566606,0.0002857275,0.00002422295,0.00004661057,0.00001127351,0.0001828677,0.0001894946,0.00001735979],"category_scores_gemma":[0.00001201462,0.0001042649,0.0001363739,0.00004571585,0.00003935768,0.000001426544,0.0001419795,0.00003199091,0.000008035031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006307778,"about_ca_system_score_gemma":0.00006597587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006257895,"about_ca_topic_score_gemma":0.000005952149,"domain_scores_codex":[0.9994251,0.0000600108,0.0001488312,0.0002021729,0.00006866369,0.00009520185],"domain_scores_gemma":[0.9995942,0.000008874523,0.0001565636,0.0002064548,0.00001225666,0.00002164699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007834755,0.00002876746,0.0001247906,0.003825919,0.0003876231,0.000001211294,0.0001149341,1.568018e-7,0.007362412,0.001431515,0.002274579,0.9844403],"study_design_scores_gemma":[0.00007156419,0.00002612083,0.001155199,0.0003588859,0.0001357716,0.00001395035,0.00002938899,1.273488e-7,0.003461384,0.0001675283,0.9943992,0.0001808766],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004880921,0.9974434,0.000710712,0.00001649121,0.0001634412,0.0002345893,0.0000355546,0.000004169523,0.0009035414],"genre_scores_gemma":[0.001224857,0.9949934,0.0002307298,0.0000527166,0.00002894081,0.00001917231,0.00009910071,0.00001998961,0.003331044],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9921246,"threshold_uncertainty_score":0.4251801,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124492198","doi":"10.1002/gene.20051","title":"Refining GAL4‐driven transgene expression in <i>Drosophila</i> with a GAL80 enhancer‐trap","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":138,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Enhancer trap; Biology; Transgene; Repressor; Psychological repression; Enhancer; Green fluorescent protein; Cell biology; Gene expression; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03497064315793345,"gpt":0.282495419685212,"spread":0.2475247765272785,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001167505,0.0001812693,0.0002328997,0.0001420168,0.0001909664,0.00001441169,0.0003442959,0.0001255942,0.00007882353],"category_scores_gemma":[0.00005756852,0.0001432297,0.00005393179,0.0004714874,0.0002548636,0.0001577125,0.00005556634,0.0002938189,0.0001014557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003674845,"about_ca_system_score_gemma":0.0001054189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003646384,"about_ca_topic_score_gemma":0.00005194953,"domain_scores_codex":[0.9982787,0.0002102937,0.0002033792,0.0006311463,0.0001722743,0.0005041595],"domain_scores_gemma":[0.9993852,0.0001248428,0.00005295885,0.0003293009,0.00002087229,0.00008675944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003108713,0.0001108537,0.001426969,0.00001478759,0.000002291998,0.00008766136,0.0002245618,0.001120412,0.9962301,0.00009371983,0.00002698652,0.0003507727],"study_design_scores_gemma":[0.001005704,0.0003756537,0.01354591,0.00005936523,0.000003884807,0.00004496385,0.00001297554,0.000008198739,0.9842428,0.0003263419,0.0002016522,0.0001725496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977307,0.0001026777,0.00009340292,0.0004397415,0.00009777608,0.0001457913,0.000009134996,0.00007136467,0.001309424],"genre_scores_gemma":[0.9983757,0.0002073603,0.0003773698,0.0007243815,0.00006373522,0.00009019205,0.00000307459,0.0000261107,0.0001320767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01211894,"threshold_uncertainty_score":0.5840737,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2022911774","doi":"10.1002/gene.10021","title":"A cre recombinase transgene with mosaic, widespread tamoxifen‐inducible action","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Cre recombinase; Transgene; Biology; Embryonic stem cell; Tamoxifen; Reporter gene; Molecular biology; Recombinase; Genetically modified mouse; Gene targeting; Gene; Cancer research; Gene expression; Genetics; Cancer; Recombination","retraction":null,"screen_n_in":null,"score":{"opus":0.02273739907722964,"gpt":0.2762076102104862,"spread":0.2534702111332566,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006415606,0.0001684376,0.0001228758,0.00004466022,0.00007565205,0.00002020537,0.0001127107,0.0001198304,0.0002285967],"category_scores_gemma":[0.00001336597,0.000157643,0.00006936902,0.0001293725,0.00002604386,0.000004044323,0.00002069264,0.00005618492,0.00003472476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001175457,"about_ca_system_score_gemma":0.00001356789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004142597,"about_ca_topic_score_gemma":0.00007744254,"domain_scores_codex":[0.9991368,0.00002184765,0.0001314308,0.0003480165,0.0001078527,0.0002540623],"domain_scores_gemma":[0.9994448,0.00000628913,0.00003094253,0.0003753386,0.00004157879,0.0001010809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004619758,0.00008367198,0.000863275,0.00003165536,0.00006535718,0.000008806885,0.0001013124,0.001478791,0.966028,0.000003929408,0.007108539,0.02418042],"study_design_scores_gemma":[0.0006287659,0.0003211046,0.001618712,0.00001371012,0.00004362877,0.00006184082,0.00007545522,0.0004036936,0.9500539,0.000006993883,0.04650071,0.0002714673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829616,0.002346419,0.01310854,0.000175918,0.0001785756,0.0001532999,0.00001495108,0.00003939566,0.001021303],"genre_scores_gemma":[0.9937366,0.0008521601,0.002022971,0.0001044781,0.0001805373,0.00004255275,0.00004828204,0.00003979263,0.002972602],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03939217,"threshold_uncertainty_score":0.6428494,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979950677","doi":"10.1002/gene.10127","title":"PPTGAL, a convenient Gal4 P‐element vector for testing expression of enhancer fragments in <i>drosophila</i>","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":127,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute on Deafness and Other Communication Disorders","keywords":"Library science; Biological sciences; Drosophila (subgenus); Biology; Genetics; Computer science; Biotechnology","retraction":null,"screen_n_in":null,"score":{"opus":0.05616127924480398,"gpt":0.2564612503649233,"spread":0.2002999711201193,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001845415,0.00008780329,0.0001463642,0.00001516395,0.00006510507,0.000008607845,0.0002384848,0.00006901122,0.0002305768],"category_scores_gemma":[0.0001552892,0.00003694245,0.00005093293,0.0002323796,0.00003224004,0.00002583975,0.0001050894,0.00004389218,0.0000158959],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002179849,"about_ca_system_score_gemma":0.00000368934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007890221,"about_ca_topic_score_gemma":0.00005170793,"domain_scores_codex":[0.9990641,0.00006280887,0.0001981278,0.0002397933,0.0001589832,0.0002761653],"domain_scores_gemma":[0.9995612,0.0001971828,0.00006898745,0.00006559634,0.00005612046,0.00005090558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002317248,0.00009698225,0.0190259,0.00001180679,0.000003889831,0.000002537541,0.00002840153,0.000005185821,0.9722155,0.000002659155,0.0007716317,0.0078123],"study_design_scores_gemma":[0.0003338937,0.0003816059,0.07948328,0.00006500261,0.000005454276,0.000002768091,0.00004172969,0.0003574466,0.9160351,0.0000748313,0.003079542,0.00013938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983736,0.0005696561,0.000007885716,0.000406691,0.0000478499,0.000342149,0.00007701332,0.00001309017,0.0001620398],"genre_scores_gemma":[0.9989393,0.00007189305,0.0006111038,0.00008007698,0.0000618344,0.0001145736,0.00002782253,9.392725e-7,0.00009247159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06045738,"threshold_uncertainty_score":0.2524654,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058342356","doi":"10.1002/gene.1016","title":"An X‐linked GFP transgene reveals unexpected paternal X‐chromosome activity in trophoblastic giant cells of the mouse placenta","year":2001,"lang":"en","type":"letter","venue":"genesis","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Medical Research Council; National Health and Medical Research Council","keywords":"Transgene; Biology; Green fluorescent protein; X-inactivation; Embryonic stem cell; Molecular biology; Genetically modified mouse; Somatic cell; Embryo; Chromosome; Cell sorting; X chromosome; Placenta; Reporter gene; Gene; Genetics; Cell biology; Flow cytometry; Gene expression; Fetus","retraction":null,"screen_n_in":null,"score":{"opus":0.01335627539517095,"gpt":0.2420060999545389,"spread":0.2286498245593679,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001374497,0.0004260042,0.0005444982,0.00008236646,0.00008029518,0.00003329508,0.0007705124,0.0008816125,0.0002073004],"category_scores_gemma":[0.00002412154,0.0003282523,0.0003439663,0.0001428618,0.000212605,0.000007090239,0.0001081573,0.0004784169,0.00001008925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003806961,"about_ca_system_score_gemma":0.0001282918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002180913,"about_ca_topic_score_gemma":0.0001663733,"domain_scores_codex":[0.9974776,0.0003664523,0.0006348912,0.0006512667,0.0003948417,0.0004749399],"domain_scores_gemma":[0.9985881,0.0000399518,0.0003494441,0.0008117699,0.0001156417,0.0000951012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001464043,0.0002556655,0.0009451473,0.0001588075,0.0000756824,0.00005126565,0.0000830509,0.0001140397,0.9866123,5.669967e-7,0.0107281,0.0008289402],"study_design_scores_gemma":[0.001420268,0.0008619527,0.02120508,0.0001024651,0.0001227086,0.00003128026,0.0001225433,0.00008609971,0.9555947,0.00005141736,0.01970489,0.0006965785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917025,0.0002491339,0.00008892696,0.006837196,0.0003046546,0.0003625935,0.0003342372,0.00001524989,0.0001055222],"genre_scores_gemma":[0.9750438,0.0006922446,0.0001215351,0.01794047,0.001171059,0.00004635762,0.0002615406,0.0000677897,0.004655154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03101761,"threshold_uncertainty_score":0.999917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123623680","doi":"10.1002/gene.20108","title":"Targeted expression of Cre recombinase in macrophages and osteoclasts in transgenic mice","year":2005,"lang":"en","type":"article","venue":"genesis","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"","keywords":"Cre recombinase; Transgene; Biology; Haematopoiesis; Bone marrow; Genetically modified mouse; Spleen; Osteoclast; Molecular biology; Population; Progenitor cell; Cell biology; Stem cell; Gene; Immunology; Genetics; In vitro; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.005006377672608629,"gpt":0.2213236891485725,"spread":0.2163173114759638,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006527138,0.00008383225,0.0001228349,0.00005726223,0.00001220855,0.000003715639,0.00006253065,0.00007754748,0.00002496151],"category_scores_gemma":[0.00002127207,0.00008066212,0.00003510687,0.00007891599,0.00002836364,0.000003937128,0.00003239938,0.00002498187,0.000001629454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003124008,"about_ca_system_score_gemma":0.00002426517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006036659,"about_ca_topic_score_gemma":0.0001863078,"domain_scores_codex":[0.9994178,0.0000546875,0.0001585868,0.0001940974,0.00004816345,0.0001266423],"domain_scores_gemma":[0.999772,0.000006705372,0.00003104611,0.0001301157,0.00001432356,0.00004582945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001169411,0.00008885116,0.01557799,0.00002862558,0.000002744929,0.000001566051,0.00008210341,0.00003733364,0.9756082,0.000001585428,0.0001553243,0.00829876],"study_design_scores_gemma":[0.0008619485,0.00003475086,0.1558955,0.00001523792,0.000007479895,0.000001326207,0.0000745945,0.000008574657,0.8416559,0.00001225522,0.001348198,0.00008415389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821606,0.01755401,0.00001726114,0.00005856509,0.00003356672,0.000085087,0.00002468121,0.000003087624,0.00006315098],"genre_scores_gemma":[0.9978958,0.001201866,0.0006505655,0.0000591518,0.00004501793,0.00001225989,0.00002644089,0.000009357273,0.00009957564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1403176,"threshold_uncertainty_score":0.3289306,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4232550090","doi":"10.1002/(sici)1526-968x(200002)26:2<99::aid-gene1>3.3.co;2-2","title":"Cre recombinase: The universal reagent for genome tailoring","year":2000,"lang":"en","type":"article","venue":"genesis","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Recombinase; Genome; Biology; Cre recombinase; Computational biology; Genetics; Gene; Recombination; Transgene","retraction":null,"screen_n_in":null,"score":{"opus":0.01266661121289866,"gpt":0.2239221039708144,"spread":0.2112554927579157,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001274643,0.00008750609,0.0000625362,0.00001241851,0.000176397,0.00001523966,0.0001358784,0.00006518963,0.0001592293],"category_scores_gemma":[0.000009850995,0.00006654898,0.00008499037,0.00005223438,0.00003825794,0.000001386449,0.00003186076,0.00002652554,0.0000237915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001003854,"about_ca_system_score_gemma":0.00002619826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002063399,"about_ca_topic_score_gemma":0.000006869393,"domain_scores_codex":[0.9993789,0.00002110505,0.00009688643,0.0002815784,0.00005623243,0.0001653602],"domain_scores_gemma":[0.9995812,0.000003834168,0.00002762106,0.0003058331,0.00004402987,0.0000375351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001747035,0.00004730357,0.0002791062,0.00001371475,0.0000757388,0.000001231945,0.00008265084,0.0008862693,0.9452568,0.00008615995,0.00446077,0.0486355],"study_design_scores_gemma":[0.0002751872,0.0002897683,0.008079533,0.00000224349,0.00003605764,0.00001132019,0.0001394781,0.00004718754,0.1015339,0.00005205742,0.8893829,0.0001503378],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948167,0.001781575,0.0008145376,0.0005249276,0.0001620902,0.0002348904,0.00001340103,0.00001117018,0.001640709],"genre_scores_gemma":[0.9698778,0.001738913,0.0007007822,0.0001458468,0.00071664,0.00003520243,0.00006521198,0.00002366781,0.02669587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8849221,"threshold_uncertainty_score":0.2713788,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006590108","doi":"10.1002/dvg.20721","title":"Reptilian tooth development","year":2011,"lang":"en","type":"review","venue":"genesis","topic":"dental development and anomalies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":100,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Dental lamina; Dentition; Biology; Enamel organ; Odontogenic; Vertebrate; Enamel paint; Anatomy; Tooth loss; Evolutionary biology; Dentistry; Ameloblast; Medicine; Pathology; Paleontology; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04546434052392902,"gpt":0.2854074442344828,"spread":0.2399431037105537,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001078139,0.0003493271,0.0005292986,0.00007445265,0.00008138019,0.00002488578,0.0003407672,0.0002993,0.0001487955],"category_scores_gemma":[0.00001138293,0.0002940218,0.0002664062,0.00009038415,0.00003589534,0.000001565862,0.0002521023,0.00005753725,0.0005440039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002364443,"about_ca_system_score_gemma":0.0003160649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003230494,"about_ca_topic_score_gemma":0.00001555297,"domain_scores_codex":[0.9987565,0.00003980176,0.0003714071,0.0004768224,0.00009009502,0.0002653283],"domain_scores_gemma":[0.9993777,0.000003208108,0.0001430192,0.0003667322,0.00002664937,0.0000827135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003553591,0.00002061934,0.00003338535,0.001290537,0.0001504779,0.000004989845,0.00002876585,6.295248e-9,0.00002979638,0.00000944763,0.002709692,0.9957187],"study_design_scores_gemma":[0.00005010611,0.00002722315,0.00008723563,0.0006170549,0.00009330165,0.00002518411,0.00001022325,7.096753e-9,0.000647932,0.000002144217,0.998037,0.000402619],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001677547,0.9908749,0.00002330874,0.000001072583,0.0003156656,0.0002203828,0.00001033379,0.00002101495,0.008365589],"genre_scores_gemma":[0.00001094652,0.9695156,0.00190059,0.00004264158,0.0001935657,0.0001100482,0.0005601151,0.0000571559,0.02760934],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9953273,"threshold_uncertainty_score":0.9999512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114066025","doi":"10.1002/gene.20079","title":"Drosophila <i>tudor</i> is essential for polar granule assembly and pole cell specification, but not for posterior patterning","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; McGill University; GAVI Alliance","keywords":"Biology; Embryo; Cell biology; oskar; Null allele; Drosophila melanogaster; Germ cell; Gene; Genetics; Granule (geology); Anatomy; Germ plasm; Allele","retraction":null,"screen_n_in":null,"score":{"opus":0.008886567314545908,"gpt":0.2331175847862526,"spread":0.2242310174717067,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001075666,0.0001354166,0.0001161242,0.00003079669,0.0001932949,0.00002456517,0.00008974591,0.0001562189,0.000004561811],"category_scores_gemma":[0.00001010495,0.0001394764,0.00007829519,0.00002974065,0.00004335129,0.000005642284,0.00004561031,0.00002031865,0.000006154538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001264586,"about_ca_system_score_gemma":0.000043386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002158844,"about_ca_topic_score_gemma":0.00001333066,"domain_scores_codex":[0.9991968,0.00001357329,0.0001770629,0.0003586658,0.00005303371,0.0002008366],"domain_scores_gemma":[0.9996324,0.000009378513,0.00008065959,0.0001586274,0.0000664878,0.00005247677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001733655,0.0000264895,0.002379132,0.0000363571,0.00002510974,2.355028e-7,0.00006459117,0.000007435695,0.9932875,0.00001455782,0.0004528759,0.003532356],"study_design_scores_gemma":[0.001021555,0.000154934,0.03012782,0.000005510366,0.00002818378,0.00001000268,0.00004223274,0.000006946626,0.9564796,0.0001358767,0.01180397,0.0001833636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988407,0.0006069425,0.00934368,0.0007754536,0.0001698197,0.0003911862,0.000257569,0.00001057225,0.00003776373],"genre_scores_gemma":[0.9920193,0.000101821,0.005162206,0.0009062689,0.0003404866,0.00008239195,0.0007450138,0.00002244518,0.0006200992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03680789,"threshold_uncertainty_score":0.5687681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991262003","doi":"10.1002/dvg.20433","title":"Generation of a conditional null allele for <i>Cftr</i> in mice","year":2008,"lang":"en","type":"article","venue":"genesis","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Null allele; Cystic fibrosis; Cystic fibrosis transmembrane conductance regulator; Allele; Cre recombinase; Biology; Conditional gene knockout; Gene targeting; Chloride channel; Transgene; Phenotype; Gene; Endocrinology; Genetically modified mouse; Immunology; Genetics; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.07276889487948322,"gpt":0.3343580104367657,"spread":0.2615891155572825,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009521491,0.00005369282,0.0001490145,0.00008648379,0.00003349295,0.00000176249,0.00003877952,0.00003201611,0.0001077681],"category_scores_gemma":[0.0001960134,0.00005075236,0.00004819657,0.0001192027,0.00005783261,0.00004517319,0.00001093773,0.00003014231,0.0000124643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004029803,"about_ca_system_score_gemma":0.0001210619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006540288,"about_ca_topic_score_gemma":0.00005803419,"domain_scores_codex":[0.9993389,0.00001634906,0.0001736156,0.0001311854,0.0002011712,0.0001387753],"domain_scores_gemma":[0.9996083,0.00009270664,0.00003429002,0.00009034909,0.0001242045,0.00005010169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002758181,0.0001511684,0.006726611,0.0001087714,0.00002111527,0.00001208467,0.0001433919,0.0002317173,0.9702977,0.0001455214,0.02039779,0.001488333],"study_design_scores_gemma":[0.005425263,0.0007929282,0.1800405,0.00005717293,0.00003959337,0.0001599281,0.0001312853,0.007244416,0.756253,0.0004589381,0.04919004,0.0002068774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917746,0.0008376772,0.006174555,0.0004691625,0.00003127024,0.0003850386,0.00007453645,0.0000108414,0.0002423343],"genre_scores_gemma":[0.9705197,0.0001280096,0.02814595,0.000152635,0.0001546079,0.0001082719,0.0002488491,0.00001027951,0.0005317267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2140447,"threshold_uncertainty_score":0.2069621,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062198266","doi":"10.1002/dvg.20823","title":"The eggshell in the <i>C. elegans</i> oocyte‐to‐embryo transition","year":2011,"lang":"en","type":"review","venue":"genesis","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Center for Research Resources; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Eggshell; Cell biology; Biology; Sperm; Caenorhabditis elegans; Polyspermy; Oocyte; Meiosis; Embryo; Embryogenesis; Biogenesis; Anatomy; Genetics; Ecology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02776571416017348,"gpt":0.2754975166173385,"spread":0.247731802457165,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006884511,0.0004362808,0.0005460884,0.00007037267,0.0002202995,0.00008384166,0.00109407,0.0004167921,0.00001793615],"category_scores_gemma":[0.00003586486,0.0002653981,0.0004236576,0.0002301031,0.00008893145,0.000002359162,0.0001050579,0.0002359865,0.0001408642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002639441,"about_ca_system_score_gemma":0.0001821677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001136368,"about_ca_topic_score_gemma":0.0003054415,"domain_scores_codex":[0.9978491,0.0004164903,0.0004905757,0.0005722804,0.0001957305,0.0004758002],"domain_scores_gemma":[0.9985641,0.00004712031,0.0001431412,0.001102956,0.00005734828,0.0000853109],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004601604,0.0001386693,0.000004878826,0.001806085,0.0002033001,0.00001436351,0.002237486,0.00003360477,0.001164635,0.00008972653,0.01314779,0.9811134],"study_design_scores_gemma":[0.0001021281,0.0001057525,0.00003979659,0.0002062205,0.0002721002,0.00004219145,0.0001111886,0.000001450443,0.0005870913,0.0000403959,0.9981373,0.0003543995],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006579931,0.996019,0.001193645,0.0001586675,0.0003896995,0.000881236,0.00004882137,0.00001307957,0.0006378744],"genre_scores_gemma":[0.0008344958,0.9963483,0.0002147796,0.000905648,0.0005857284,0.0002210566,0.000164541,0.00007877644,0.0006467106],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9849895,"threshold_uncertainty_score":0.9999798,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109488438","doi":"10.1002/dvg.20216","title":"Conditional disruption of ubiquitous calpains in the mouse","year":2006,"lang":"en","type":"article","venue":"genesis","topic":"Calpain Protease Function and Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Calpain; Protein subunit; Cre recombinase; Biology; Conditional gene knockout; Proteases; Cell biology; Transgene; Molecular biology; Germline; Genetically modified mouse; Gene; Genetics; Phenotype; Enzyme; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.006516327162996702,"gpt":0.2255393101036578,"spread":0.2190229829406611,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001359435,0.00004690444,0.00004356206,0.0000284066,0.0000314636,0.000004890278,0.00004983751,0.00005922184,0.0000241942],"category_scores_gemma":[0.00001309063,0.00003501856,0.00004538928,0.00006427911,0.00003758901,0.0000014242,0.00001096597,0.00001935111,0.000003676445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006794234,"about_ca_system_score_gemma":0.00001662635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001053276,"about_ca_topic_score_gemma":0.0001296617,"domain_scores_codex":[0.9995729,0.00005688257,0.0001148592,0.00009813255,0.00008962458,0.00006755721],"domain_scores_gemma":[0.9997981,0.000007026865,0.00003780804,0.0001181281,0.00002973384,0.000009166484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004923934,0.0001114409,0.008125972,0.00001187913,0.000007378325,9.689569e-7,0.00002868388,0.001820643,0.9813648,0.001092373,0.006312518,0.001074091],"study_design_scores_gemma":[0.0008594059,0.0001530807,0.4560124,0.000005392352,0.00001954739,0.00002225383,0.0002387001,0.000469677,0.4930014,0.001035873,0.04799368,0.0001886725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940897,0.0001660031,0.005012533,0.0002001871,0.00003455992,0.000113008,0.00001918471,0.000004208044,0.0003606171],"genre_scores_gemma":[0.9984381,0.00001431693,0.00009469698,0.0001378487,0.0001819271,0.00002305371,0.0004473633,0.000004753121,0.0006579064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4883634,"threshold_uncertainty_score":0.1428015,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2017472084","doi":"10.1002/gene.20027","title":"Loss‐of‐imprinting of <i>Peg1</i> in mouse interspecies hybrids is correlated with altered growth","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Hybrid; Allele; Genomic imprinting; Imprinting (psychology); Loss of heterozygosity; Genetics; Gene; Molecular biology; Gene expression; DNA methylation; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.006878149184088171,"gpt":0.2062472486027686,"spread":0.1993690994186804,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001064175,0.0001448488,0.0002198976,0.00008021013,0.00002147876,0.000007800774,0.0001892319,0.00008336834,0.00002028817],"category_scores_gemma":[0.00003874413,0.0001326003,0.00007980681,0.0001660356,0.00009875798,0.000003473187,0.000133291,0.00005505441,0.000003013692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001384324,"about_ca_system_score_gemma":0.00006118951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003786138,"about_ca_topic_score_gemma":0.00003658112,"domain_scores_codex":[0.9990312,0.00002041463,0.0003285047,0.0002782563,0.0001179663,0.0002236157],"domain_scores_gemma":[0.9993818,0.000006737359,0.0001598951,0.0002913701,0.0001174244,0.00004281779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003411174,0.00007876358,0.1026121,0.00006235224,0.00006316099,0.00000233198,0.0003390795,0.0004304821,0.8952974,0.00003173019,0.00003602472,0.001012468],"study_design_scores_gemma":[0.001032322,0.0002755332,0.04977397,0.0000644639,0.000016674,0.00003881867,0.0003773708,0.00001887848,0.9480997,0.00002882707,0.0001161637,0.0001572753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997399,0.000377049,0.001599163,0.00006955175,0.00006348098,0.000112202,0.00001078821,0.000006508234,0.0003622778],"genre_scores_gemma":[0.9964085,0.0002061582,0.003072718,0.00006617843,0.00003339251,0.000005873894,0.0000103387,0.0000240499,0.0001728389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0528381,"threshold_uncertainty_score":0.5407282,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2909266810","doi":"10.1002/dvg.23278","title":"Insights into retinoic acid deficiency and the induction of craniofacial malformations and microcephaly in fetal alcohol spectrum disorder","year":2019,"lang":"en","type":"review","venue":"genesis","topic":"Prenatal Substance Exposure Effects","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Israel Science Foundation; United States-Israel Binational Science Foundation; Health Research","keywords":"Microcephaly; Retinoic acid; Craniofacial; Biology; Craniofacial abnormality; Endocrinology; Internal medicine; Medicine; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01976434168632285,"gpt":0.2794999092052969,"spread":0.259735567518974,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002496556,0.0002786113,0.001127003,0.0002842511,0.00007491741,0.00001747159,0.0001189935,0.00025359,0.0000128552],"category_scores_gemma":[0.0001318487,0.0001755173,0.0001542307,0.0005037904,0.0002261956,0.0001281399,0.0001007866,0.0002668638,0.00002356956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007139522,"about_ca_system_score_gemma":0.0001356223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001367412,"about_ca_topic_score_gemma":0.00009942368,"domain_scores_codex":[0.9985961,0.0001635323,0.0005289146,0.0003156343,0.000212381,0.000183445],"domain_scores_gemma":[0.9991469,0.0001121118,0.0003432349,0.0003128699,0.00003358068,0.00005134853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001314776,0.00009777662,0.001355399,0.02529469,0.0001315927,0.00000940364,0.002700277,7.351942e-7,0.0005934337,0.0003684188,0.00005134414,0.9692655],"study_design_scores_gemma":[0.03707163,0.00203951,0.1301717,0.05660037,0.01588106,0.002419449,0.003148363,0.0002272687,0.002505866,0.002879529,0.7425205,0.004534734],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1546392,0.8435644,0.0000617219,0.00006565695,0.0001732554,0.001304938,0.000008388055,0.00001401737,0.000168369],"genre_scores_gemma":[0.1232918,0.8763029,0.0001178251,0.00001726056,0.00007613131,0.00007546975,0.00004413582,0.00002561919,0.00004888374],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9647307,"threshold_uncertainty_score":0.7157386,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1603859793","doi":"10.1002/dvg.22750","title":"Sea urchin neural development and the metazoan paradigm of neurogenesis","year":2014,"lang":"en","type":"article","venue":"genesis","topic":"Echinoderm biology and ecology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Neurogenesis; Biology; Proneural genes; Neuroscience; Neural stem cell; Ectoderm; Cell biology; Embryogenesis; Progenitor cell; Embryo; Stem cell","retraction":null,"screen_n_in":null,"score":{"opus":0.01476705457116954,"gpt":0.1867529480624099,"spread":0.1719858934912404,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003851732,0.00008489611,0.0001754105,0.000006416853,0.0002013351,0.00000827506,0.0001679199,0.00006138586,0.00007063424],"category_scores_gemma":[0.00004536894,0.00002468581,0.00005129185,0.00008915967,0.0001626321,0.0000212872,0.00007428102,0.00004143304,0.00001008766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002196804,"about_ca_system_score_gemma":0.000003506392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002129885,"about_ca_topic_score_gemma":0.001268602,"domain_scores_codex":[0.9992231,0.0002336039,0.0001606121,0.0001662032,0.00005261989,0.0001638637],"domain_scores_gemma":[0.9994365,0.0003987639,0.00006542963,0.00004794458,0.00001150878,0.00003987035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001325996,0.00005405605,0.6375081,0.00001113523,0.00007169847,0.000001408439,0.0003349936,0.00002168035,0.02695907,0.004517422,0.0001913062,0.3301965],"study_design_scores_gemma":[0.000225722,0.00005880819,0.9767484,0.000001150116,0.00002468113,0.00001286405,0.00004000825,0.0005035874,0.01130898,0.0008784414,0.01010577,0.00009159248],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965702,0.0004401153,0.000006383418,0.002606547,0.00007482636,0.00008259738,0.00000321554,0.00001771582,0.0001984417],"genre_scores_gemma":[0.999014,0.00004546713,0.00011321,0.0006904432,0.00005501287,0.00001365383,0.000007944673,5.288252e-7,0.00005971795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3392403,"threshold_uncertainty_score":0.1548527,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2067472732","doi":"10.1002/1526-968x(200007)27:3<95::aid-gene10>3.0.co;2-a","title":"FACS for the isolation of individual cells from transgenic mice harboring a fluorescent protein reporter","year":2000,"lang":"en","type":"article","venue":"genesis","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Green fluorescent protein; Biology; Reporter gene; Transgenesis; Cell sorting; Transgene; Flow cytometry; Yellow fluorescent protein; Fluorescent protein; Fluorescence; Molecular biology; Cell biology; Gene; Genetics; Gene expression; Embryogenesis","retraction":null,"screen_n_in":null,"score":{"opus":0.009714540443763879,"gpt":0.2550002427433061,"spread":0.2452857022995422,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001024007,0.00008848861,0.00008195564,0.00001291189,0.00004178091,0.00001116497,0.0001282211,0.0000699911,0.00005128507],"category_scores_gemma":[0.000006721484,0.00007267494,0.00009246381,0.00003792051,0.00001567804,0.000001561609,0.00001386512,0.00002290963,0.000001682867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003507359,"about_ca_system_score_gemma":0.00001980795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004544684,"about_ca_topic_score_gemma":0.00002159702,"domain_scores_codex":[0.999402,0.00001181414,0.0001859477,0.0001832006,0.0000888361,0.0001282312],"domain_scores_gemma":[0.9996755,0.00001085413,0.00003836798,0.0002234875,0.00002651489,0.00002533696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004847143,0.00001536996,0.0001284312,0.00001510487,0.00006628691,1.27079e-7,0.0001436718,0.001523237,0.9792699,6.764319e-7,0.0001898893,0.01859888],"study_design_scores_gemma":[0.0002557683,0.00005898772,0.005767135,0.000008377704,0.000061732,6.856516e-7,0.00003908983,0.0004583631,0.9829352,0.000005849143,0.01031694,0.00009183091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9530706,0.001315482,0.04501753,0.00004470278,0.00008299223,0.0003680203,0.00007004743,0.000006554066,0.00002405258],"genre_scores_gemma":[0.9944347,0.0001238685,0.004848848,0.00002972281,0.0002195499,0.00007308021,0.00005615274,0.00001658831,0.0001974586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04136411,"threshold_uncertainty_score":0.2963598,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1598794494","doi":"10.1002/dvg.22873","title":"Xenbase: Core features, data acquisition, and data processing","year":2015,"lang":"en","type":"article","venue":"genesis","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Biotechnology and Biological Sciences Research Council; National Institutes of Health; Wellcome Trust","keywords":"Core (optical fiber); Computer science; Data acquisition; Telecommunications; Operating system","retraction":null,"screen_n_in":null,"score":{"opus":0.1302921301307467,"gpt":0.3598876030192796,"spread":0.2295954728885329,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003146031,0.00009402219,0.00009500681,0.00001738364,0.00006710353,0.00003546045,0.0006304362,0.0001339201,0.000006794871],"category_scores_gemma":[0.000236993,0.00007779257,0.000007838815,0.0000623142,0.0001300009,0.000006341852,0.001054543,0.00004271703,0.000005155997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003587737,"about_ca_system_score_gemma":0.0001141134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004438834,"about_ca_topic_score_gemma":0.0000386047,"domain_scores_codex":[0.9991285,0.00002431873,0.00009668801,0.0004775594,0.0001180453,0.0001549204],"domain_scores_gemma":[0.9986962,0.000007664249,0.00003989786,0.001086518,0.00005209774,0.0001175994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008807914,0.00004795988,0.006002987,0.00005245411,0.0000454198,0.00001510694,0.00008074239,0.000001571961,0.02612199,0.00000942299,0.4776064,0.4899279],"study_design_scores_gemma":[0.001037413,0.0002227216,0.02420087,0.00004383992,0.00009287593,0.0001918979,0.0007127124,0.0008159648,0.006812894,0.0001574212,0.9652831,0.0004283111],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8481904,0.1333809,0.0111564,0.003592869,0.0005267095,0.0002542335,0.001396973,0.0001426506,0.001358844],"genre_scores_gemma":[0.9603483,0.0007198285,0.02824599,0.001143992,0.0007981906,0.000006915396,0.007742789,0.00002684172,0.0009671106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4894996,"threshold_uncertainty_score":0.3172289,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117336502","doi":"10.1002/gene.1021","title":"Characterization of amphioxus <i>amphivent</i>, an evolutionarily conserved marker for chordate ventral mesoderm","year":2001,"lang":"en","type":"article","venue":"genesis","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"University of South Florida","keywords":"Mesoderm; FGF and mesoderm formation; Paraxial mesoderm; Chordate; Biology; Intermediate mesoderm; NODAL; Lateral plate mesoderm; Endoderm; Vertebrate; Gastrulation; Cell biology; Anatomy; Genetics; Embryogenesis; Embryo; Embryonic stem cell; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02000062647579547,"gpt":0.2819512353502354,"spread":0.2619506088744399,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001612624,0.0001099888,0.0001292915,0.00005109713,0.00007373936,0.00001396925,0.0001410071,0.0001000155,0.00006874165],"category_scores_gemma":[0.00004733382,0.0001165483,0.0001048682,0.0001180926,0.0000600954,0.000008452105,0.00006054221,0.00002767576,0.000007562503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001524478,"about_ca_system_score_gemma":0.00009279075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003589795,"about_ca_topic_score_gemma":0.00008298631,"domain_scores_codex":[0.9990633,0.00007196256,0.0001867499,0.0002786159,0.0001333181,0.0002660614],"domain_scores_gemma":[0.9993427,0.00001334564,0.00005682724,0.0003050621,0.0001866562,0.00009539282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004449833,0.00009048507,0.02328954,0.00003254319,0.00004573596,0.000002028884,0.00001492774,0.000005109439,0.9700364,0.00002079741,0.0001256745,0.005891804],"study_design_scores_gemma":[0.001022222,0.0005023593,0.4259352,0.00001187061,0.0000379199,0.0000353173,0.00002292722,0.0009741818,0.5279617,0.00004810335,0.04320431,0.0002438098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958094,0.0003679445,0.002952918,0.0001006927,0.00009624632,0.000398792,0.0001618784,0.00001152393,0.0001005531],"genre_scores_gemma":[0.9967903,0.0002911665,0.0003920066,0.00007250546,0.0001692963,0.00007988498,0.001030892,0.00002526175,0.001148654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4420746,"threshold_uncertainty_score":0.47527,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045112261","doi":"10.1002/dvg.20677","title":"Ubiquitous expression of the monomeric red fluorescent protein mcherry in transgenic mice","year":2010,"lang":"en","type":"article","venue":"genesis","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital","funders":"","keywords":"mCherry; Green fluorescent protein; Transgene; Biology; Fusion protein; Cell biology; Molecular biology; Protein subcellular localization prediction; Gene; Recombinant DNA; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01150456107280817,"gpt":0.2602762986669835,"spread":0.2487717375941754,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002611852,0.0001224086,0.0001259244,0.00004925295,0.00004684566,0.000006719077,0.0004355759,0.0001564556,0.00006011718],"category_scores_gemma":[0.00003606956,0.0000932258,0.0001104606,0.0001887828,0.00008568984,0.000002218294,0.00009345886,0.000151622,0.000004837481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001099097,"about_ca_system_score_gemma":0.0001183188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005772377,"about_ca_topic_score_gemma":0.0004596798,"domain_scores_codex":[0.998951,0.0001369238,0.0002061045,0.0002811518,0.0001761659,0.0002486462],"domain_scores_gemma":[0.9992437,0.000006365845,0.00006346503,0.0005829589,0.00004956476,0.00005399488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000675381,0.00008580522,0.001236066,0.00002148108,0.00001062728,4.394034e-7,0.00006632579,0.00004084888,0.9926437,8.419997e-7,0.0001423436,0.005076171],"study_design_scores_gemma":[0.0004819373,0.0002771706,0.008362392,0.00001425063,0.000004418492,0.000001404631,0.00003002296,0.00001859188,0.9892786,0.00001763084,0.001406472,0.0001071666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984285,0.0006007375,0.00002556362,0.0002392734,0.0001194235,0.0004729456,0.000008544694,0.000006028211,0.00009893227],"genre_scores_gemma":[0.9989535,0.00009131275,0.000383477,0.00005155807,0.0001298574,0.0001014687,0.000007262856,0.00002640649,0.0002552241],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007126325,"threshold_uncertainty_score":0.3801638,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2023123202","doi":"10.1002/dvg.22040","title":"A conditional allele of <i>Rspo3</i> reveals redundant function of R‐spondins during mouse limb development","year":2012,"lang":"en","type":"article","venue":"genesis","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Allele; Cre recombinase; Exon; Gene; Limb development; Wnt signaling pathway; Embryonic stem cell; Function (biology); Genetics; Transgene; Genetically modified mouse","retraction":null,"screen_n_in":null,"score":{"opus":0.01363217764898191,"gpt":0.2481828357157256,"spread":0.2345506580667437,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002200678,0.00008105578,0.0001203966,0.00006065158,0.00006036925,0.000003378715,0.00008736488,0.00006676189,0.00005361145],"category_scores_gemma":[0.00004173921,0.00007769701,0.00006343278,0.00006747808,0.00003977786,0.000005405691,0.00007214027,0.00003070093,0.000008085415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001654612,"about_ca_system_score_gemma":0.00006632153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001628068,"about_ca_topic_score_gemma":0.000005488306,"domain_scores_codex":[0.9992032,0.00003546261,0.0002173103,0.0001315927,0.0001756944,0.0002367123],"domain_scores_gemma":[0.9995513,0.000007322206,0.00009036285,0.0001698206,0.00009017953,0.00009102888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002004227,0.00008646688,0.01527476,0.00005891083,0.00007373302,3.737581e-7,0.00004709432,0.00002511468,0.9830618,0.00004568449,0.0007436537,0.0003820174],"study_design_scores_gemma":[0.0002619039,0.00009325847,0.1210621,0.000006350008,0.000008553388,0.00000471289,0.00006165417,0.000002052212,0.874528,0.000005343922,0.003890841,0.00007526708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981918,0.000800845,0.0006902612,0.0000181709,0.00002941965,0.00009506971,0.00002525534,0.000004798831,0.000144341],"genre_scores_gemma":[0.9953955,0.0001147763,0.001062826,0.00002697866,0.0001043601,0.00001915785,0.0001665304,0.00001255705,0.003097251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1085338,"threshold_uncertainty_score":0.3168392,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144537627","doi":"10.1002/dvg.22859","title":"A <scp><i>H</i></scp><i>oxa13</i>:Cre mouse strain for conditional gene manipulation in developing limb, hindgut, and urogenital system","year":2015,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Hindgut; Biology; Limb development; Limb bud; Organogenesis; Anatomy; Apical ectodermal ridge; Conditional gene knockout; Gene; Cell biology; Genetics; Embryonic stem cell; Phenotype; Mesoderm","retraction":null,"screen_n_in":null,"score":{"opus":0.02219751334282813,"gpt":0.241396375740755,"spread":0.2191988623979268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002926309,0.0001660671,0.0001507399,0.00008183796,0.00008857266,0.00002171711,0.00008463804,0.0002194225,8.422684e-7],"category_scores_gemma":[0.00007658651,0.0001752274,0.00004711332,0.00008641996,0.00004688934,0.00001077221,0.00006767682,0.00003410996,0.000007054638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005961623,"about_ca_system_score_gemma":0.0001471298,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000109213,"about_ca_topic_score_gemma":0.00006430662,"domain_scores_codex":[0.9989808,0.00005880776,0.0002532129,0.0003613719,0.0001020755,0.0002437438],"domain_scores_gemma":[0.9995773,0.00002813706,0.00008441446,0.0001206684,0.00009682066,0.00009265126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001716905,0.00007202808,0.05725115,0.0001457395,0.0001739491,0.00001126279,0.0003334843,0.0007586953,0.9325284,0.001640481,0.004016976,0.002896094],"study_design_scores_gemma":[0.003457967,0.0004151757,0.2094606,0.00002976787,0.00005619614,0.0002618808,0.001715076,0.0009569366,0.753021,0.0005791906,0.02960748,0.0004387086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887177,0.0009993222,0.009419569,0.00006995517,0.0001095911,0.0003615199,0.00015839,0.0000220768,0.00014186],"genre_scores_gemma":[0.9872002,0.0000468274,0.008887146,0.0001786107,0.0001587922,0.000107294,0.002917751,0.00002256243,0.0004808146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1795075,"threshold_uncertainty_score":0.7145566,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964077949","doi":"10.1002/dvg.20485","title":"Identifying genes that interact with <i>Drosophila</i> presenilin and amyloid precursor protein","year":2009,"lang":"en","type":"article","venue":"genesis","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canada Research Chairs","keywords":"Presenilin; Amyloid precursor protein; Biology; Notch signaling pathway; Transmembrane protein; Gene; Genetics; Amyloid precursor protein secretase; Cell biology; Enhancer; Phenotype; Alzheimer's disease; Disease; Gene expression; Medicine; Receptor; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.03574948773789752,"gpt":0.3062878932922149,"spread":0.2705384055543174,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007894447,0.000197871,0.0002512388,0.0001016338,0.0001152144,0.0000673527,0.00007790717,0.00005260979,0.00007232224],"category_scores_gemma":[0.00001825017,0.0001403466,0.00006772643,0.0001445248,0.00006783504,0.0001737497,0.00004008143,0.00009114166,0.00005805067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003620387,"about_ca_system_score_gemma":0.00009360402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006444781,"about_ca_topic_score_gemma":0.00001528285,"domain_scores_codex":[0.9986894,0.00004734223,0.0001344958,0.0003734534,0.0003963945,0.0003588884],"domain_scores_gemma":[0.9991814,0.00002527331,0.00005318657,0.0003121451,0.00007298369,0.0003550203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01043994,0.003567119,0.5019559,0.0009821942,0.01343587,0.00358976,0.001331299,0.000006994676,0.1255553,0.0001464475,0.002706244,0.3362829],"study_design_scores_gemma":[0.006742891,0.002760275,0.6317637,0.0007761028,0.00146352,0.0004434604,0.0003259605,0.0001673554,0.3524852,0.000927195,0.001515034,0.0006293317],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9745712,0.02236457,0.00005277315,0.0009860366,0.00001924083,0.001022793,0.00002081468,0.00007923977,0.0008832971],"genre_scores_gemma":[0.9972106,0.0005011506,0.001429016,0.0001465781,0.0001096659,0.0001015818,0.0000349292,0.00002572424,0.0004407651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3356536,"threshold_uncertainty_score":0.5723169,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2798264572","doi":"10.1002/dvg.23103","title":"Germ layers, the neural crest and emergent organization in development and evolution","year":2018,"lang":"en","type":"review","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Neural crest; Biology; Vertebrate; Mesoderm; Mesenchyme; Neural plate; Neural fold; Germ layer; Evolutionary developmental biology; Evolutionary biology; Anatomy; Neural tube; Organogenesis; Genetics; Embryo; Gene; Embryonic stem cell","retraction":null,"screen_n_in":null,"score":{"opus":0.01727411632814836,"gpt":0.2644801148394088,"spread":0.2472059985112604,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001840008,0.0001883213,0.0002292104,0.0000570649,0.0001356431,0.00001441504,0.00008969785,0.0002626179,0.000007484103],"category_scores_gemma":[0.00003643301,0.0001339973,0.00002570563,0.000187625,0.00007665388,0.000002585328,0.0001585719,0.00004759934,0.000008901962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003387115,"about_ca_system_score_gemma":0.0001397946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009337848,"about_ca_topic_score_gemma":0.00009856568,"domain_scores_codex":[0.9991106,0.0001008413,0.0002555065,0.0003348166,0.00005470409,0.0001435247],"domain_scores_gemma":[0.9996616,0.000008271397,0.0001084571,0.0001424869,0.00004500402,0.00003416912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001118135,0.00002476508,0.009133379,0.0009016308,0.0001299485,0.000001640095,0.0001326078,0.000001840586,0.000619642,0.00002514029,0.0009944964,0.9880237],"study_design_scores_gemma":[0.0001159809,0.00003383438,0.04066595,0.00019524,0.00007403757,0.00005170449,0.00002870939,0.000003535245,0.0006331785,0.000006126621,0.9579251,0.0002665832],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.08339017,0.9160655,0.00005503066,0.0000316452,0.0001499073,0.0002732896,0.000004963539,0.000005391638,0.00002411767],"genre_scores_gemma":[0.01032224,0.988494,0.0002111819,0.00003493545,0.0001322151,0.00003497269,0.0005142302,0.00002043027,0.0002357316],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9877571,"threshold_uncertainty_score":0.5464253,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136130289","doi":"10.1002/dvg.20476","title":"Gain of function of <i>Tbx1</i> affects pharyngeal and heart development in the mouse","year":2009,"lang":"en","type":"letter","venue":"genesis","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Heart, Lung, and Blood Institute; Fondazione Telethon","keywords":"TBX1; Transgene; Phenotype; Mutant; Biology; Ectopic expression; Gene; Genetically modified mouse; Wild type; Loss function; Gene expression; Function (biology); Cell biology; Genetics; Promoter","retraction":null,"screen_n_in":null,"score":{"opus":0.01486682827799522,"gpt":0.2571526218040814,"spread":0.2422857935260862,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003184043,0.0001580718,0.0002343345,0.0001024197,0.00002806866,0.000008992205,0.0001559099,0.0003254255,0.000008966585],"category_scores_gemma":[0.00002988353,0.0001272267,0.00007337229,0.0001164837,0.00006125955,0.000002265372,0.00008473326,0.0002175625,0.000002899894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001211832,"about_ca_system_score_gemma":0.0001248068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003379643,"about_ca_topic_score_gemma":0.0000646948,"domain_scores_codex":[0.9988439,0.0001786167,0.00019814,0.0002804171,0.0002692363,0.0002296983],"domain_scores_gemma":[0.9995027,0.00004006418,0.00005905313,0.0003164793,0.00005869468,0.00002298674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001009343,0.00005745695,0.0007998868,0.0003874463,0.00005938351,0.00001702273,0.0000820679,0.000003447365,0.6841286,5.721504e-7,0.2927876,0.02157565],"study_design_scores_gemma":[0.0003661244,0.0004773755,0.009976876,0.00002958406,0.0000275108,0.0000184259,0.00001893536,0.000003266263,0.4086467,0.000006990398,0.5802409,0.0001873217],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886346,0.003084733,0.00002812769,0.007542796,0.0000369957,0.0004055808,0.00002094678,0.000003349415,0.0002428111],"genre_scores_gemma":[0.9374163,0.0004133547,0.0004046106,0.05938755,0.0005952633,0.00007271335,0.0004658581,0.00004499398,0.001199343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2874533,"threshold_uncertainty_score":0.5188153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997688983","doi":"10.1002/gene.10115","title":"Expression pattern of Gal4 enhancer trap insertions into the <i>bric à brac</i> locus generated by P element replacement","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Institut National de la Santé et de la Recherche Médicale","keywords":"Biology; Library science; Humanities; Art; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.01594975614841801,"gpt":0.2061646116978472,"spread":0.1902148555494292,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009365529,0.0001089814,0.0001076783,0.000007207256,0.0002701612,0.00002525277,0.0001903152,0.00004930055,0.003526684],"category_scores_gemma":[0.000008201781,0.00003755067,0.00007207708,0.0002866467,0.00003111298,0.00003680084,0.00005756501,0.00004046541,0.0000513522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001999319,"about_ca_system_score_gemma":0.000003441917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007300541,"about_ca_topic_score_gemma":0.000647691,"domain_scores_codex":[0.9990461,0.00008053892,0.0002591388,0.0002283272,0.000211001,0.0001748469],"domain_scores_gemma":[0.9996321,0.00005316874,0.00009838182,0.0001031572,0.00005781277,0.00005539312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004862818,0.0001403832,0.001859148,0.00000280489,0.00001221345,1.846469e-7,0.0003943293,0.0000254826,0.9007384,0.000001995221,0.01007718,0.08674304],"study_design_scores_gemma":[0.0002417052,0.0002783192,0.02568864,0.00002048522,0.00003549661,0.00000192563,0.0003469501,0.0005300483,0.8984758,0.00006186483,0.07411414,0.0002045846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945942,0.001645481,0.000116274,0.003085567,0.00009075858,0.0001989573,0.00004892667,0.0000250613,0.0001948015],"genre_scores_gemma":[0.9979465,0.0005212871,0.00007046264,0.0004120263,0.0001207821,0.00007634334,0.00005457579,0.000001127814,0.0007969212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08653846,"threshold_uncertainty_score":0.9973843,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2029068462","doi":"10.1002/dvg.20720","title":"Unsuspected effects of a lung‐specific cre deleter mouse line","year":2011,"lang":"en","type":"article","venue":"genesis","topic":"Neonatal Respiratory Health Research","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Cre recombinase; Biology; Phenotype; Gene targeting; Recombinase; Cre-Lox recombination; Gene; Genetically modified mouse; Transgene; Lung; Molecular biology; Genetics; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.05927937904139832,"gpt":0.3306213101627177,"spread":0.2713419311213193,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002002524,0.0001391574,0.0003255642,0.0002242307,0.00004325471,0.000003675062,0.0001428397,0.0001135295,0.0007088326],"category_scores_gemma":[0.0002462835,0.0001168968,0.00009354651,0.0003699465,0.00008616385,0.00003739696,0.00006821191,0.0001691889,0.000178643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008610577,"about_ca_system_score_gemma":0.0001698739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001385869,"about_ca_topic_score_gemma":0.00001148257,"domain_scores_codex":[0.998528,0.00008887656,0.0002982965,0.0002787155,0.0004239105,0.0003822238],"domain_scores_gemma":[0.9986613,0.0001490149,0.00006829762,0.0005543671,0.0002561016,0.0003108725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003128746,0.0009281726,0.02439744,0.00675583,0.0002293233,0.0009223775,0.001114557,6.287812e-7,0.8157657,0.0002475508,0.005319068,0.1411906],"study_design_scores_gemma":[0.002119134,0.001000794,0.08804969,0.0001311995,0.00005678579,0.00002138131,0.00002650135,0.00005329289,0.888391,0.00002830834,0.01997223,0.0001496815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886981,0.008823023,0.000294291,0.00008958975,0.0001033922,0.0007095237,0.000008653324,0.00007647737,0.001196952],"genre_scores_gemma":[0.9941069,0.0009136075,0.002384494,0.0004178314,0.0001830815,0.00007445573,0.00000869942,0.00005817369,0.001852722],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1410409,"threshold_uncertainty_score":0.776122,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1530071185","doi":"10.1002/dvg.22869","title":"Cross‐organism analysis using InterMine","year":2015,"lang":"en","type":"review","venue":"genesis","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute; Wellcome Trust","keywords":"Computer science; Scripting language; Identifier; Interoperation; Interface (matter); Organism; Graphical user interface; Set (abstract data type); Software; User interface; World Wide Web; Database; Interoperability; Programming language; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.04332457469387577,"gpt":0.3439149790920676,"spread":0.3005904043981918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003216009,0.0003825991,0.001100716,0.0001767363,0.00007304498,0.00008328263,0.0004296712,0.0005745726,0.00007496474],"category_scores_gemma":[0.00001718244,0.0003252559,0.0007939612,0.0004383827,0.00006372255,0.000002345266,0.00036016,0.0001185927,0.00005878161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005430777,"about_ca_system_score_gemma":0.0002959348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001990308,"about_ca_topic_score_gemma":0.00001176694,"domain_scores_codex":[0.9985082,0.00006072915,0.0005880398,0.0004012032,0.0001333226,0.0003085538],"domain_scores_gemma":[0.9986282,0.000007028458,0.0003536385,0.0007526749,0.0001121789,0.0001462926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005036965,0.00001970965,0.00001978831,0.001301456,0.00234401,0.000004868532,0.00002441914,0.0001483798,0.00003989469,0.000005238624,0.001792919,0.9942943],"study_design_scores_gemma":[0.00008994469,0.00003184093,0.000002601758,0.0001582692,0.003597665,0.00003466847,0.000007463572,0.0002413468,0.00002066192,0.000008675245,0.9954153,0.0003915959],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002886549,0.9944582,0.004166558,0.000001439502,0.0002789258,0.000209515,0.0001252533,0.0000114486,0.000460007],"genre_scores_gemma":[0.0000580785,0.994634,0.001800702,0.00005051375,0.0006541277,0.00001522551,0.001120756,0.00006025065,0.00160637],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9939027,"threshold_uncertainty_score":0.99992,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2155963991","doi":"10.1002/gene.10202","title":"Effect of histone deacetylase inhibitors on heat shock protein gene expression during <i>Xenopus</i> development","year":2003,"lang":"en","type":"article","venue":"genesis","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Trichostatin A; Histone deacetylase; Biology; Neurula; Molecular biology; Hsp70; Histone deacetylase inhibitor; Cell biology; Heat shock protein; Chromatin; Histone; Heat shock; Sodium butyrate; Embryogenesis; Gastrulation; Embryo; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.007961765970098915,"gpt":0.2748981673601085,"spread":0.2669364013900096,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005558779,0.0002495656,0.0002481916,0.0001068789,0.0001653533,0.00001100995,0.0001860692,0.0002018267,0.00003900071],"category_scores_gemma":[0.0002324161,0.000217957,0.0001000072,0.0001468027,0.00005389405,0.000003834938,0.0001324305,0.0001073279,0.00003264489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001025125,"about_ca_system_score_gemma":0.000172739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002077734,"about_ca_topic_score_gemma":0.00000430251,"domain_scores_codex":[0.9979907,0.0003775134,0.0003232877,0.0004999641,0.00038354,0.0004249383],"domain_scores_gemma":[0.999157,0.00001767792,0.00004959965,0.000530629,0.00007270939,0.0001724448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000370557,0.00009744344,0.0004323233,0.0001864124,0.00002588248,0.0000100895,0.0000307804,0.0001083856,0.9965339,0.000002342557,0.0001535541,0.002048289],"study_design_scores_gemma":[0.0009180724,0.000722355,0.0001737688,0.00007900507,0.000006544667,0.00001032125,0.000007643575,0.000001854398,0.9932882,0.000001220284,0.004571325,0.000219731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973629,0.001032114,0.0002775464,0.00001931808,0.00006713725,0.000858815,0.00000629177,0.00001856621,0.0003573559],"genre_scores_gemma":[0.9957236,0.00004021682,0.002879264,0.00001927435,0.0000841204,0.0003259931,0.00002858686,0.00005046584,0.0008484621],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004417771,"threshold_uncertainty_score":0.888803,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1847518373","doi":"10.1002/dvg.22729","title":"Characterization of an allelic series in the <i>MONOPTEROS</i> gene of arabidopsis","year":2013,"lang":"en","type":"article","venue":"genesis","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Allele; Arabidopsis; Biology; Genetics; Gene; Mutant; Auxin; Function (biology)","retraction":null,"screen_n_in":null,"score":{"opus":0.01761222224847534,"gpt":0.2129436225121048,"spread":0.1953314002636294,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001696808,0.00004952052,0.00009681607,0.00001040593,0.00002659131,0.000009763025,0.0002413281,0.00005093912,0.00009805866],"category_scores_gemma":[0.00001388231,0.00001592416,0.00002741468,0.0001836134,0.00005219998,0.00007663103,0.00003052621,0.0000276097,0.000009805472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002426798,"about_ca_system_score_gemma":0.000003389441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005189926,"about_ca_topic_score_gemma":0.00026428,"domain_scores_codex":[0.999404,0.0001456536,0.0001322885,0.0001054332,0.00009888828,0.0001137438],"domain_scores_gemma":[0.9997934,0.00003451253,0.00005197039,0.00005782331,0.00004377019,0.00001854572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000008882139,0.00003721887,0.01907412,0.000002610565,0.000003289667,6.990411e-7,0.00006743902,5.826824e-7,0.9688058,0.00000714281,0.000009068382,0.0119831],"study_design_scores_gemma":[0.00002330005,0.0000972598,0.6399867,0.000001815582,0.000001464366,0.000003820776,0.00007022968,0.00001040537,0.3595776,0.00002980204,0.0001697417,0.00002785796],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990333,0.00003378206,0.000001554943,0.000662861,0.00001213657,0.0001588014,0.00003662958,0.000004797007,0.00005613147],"genre_scores_gemma":[0.9994968,0.00009205336,0.0000653631,0.0001187228,0.00002490246,0.0000273113,0.0001421425,3.50123e-7,0.00003235207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6209126,"threshold_uncertainty_score":0.1073674,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2082498511","doi":"10.1002/gene.20089","title":"<i>UNC‐119</i> homolog required for normal development of the zebrafish nervous system","year":2004,"lang":"en","type":"letter","venue":"genesis","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"University of Oregon; University of North Carolina","keywords":"Biology; Zebrafish; Caenorhabditis elegans; Axon guidance; Drosophila melanogaster; Nervous system; Gene; Mutant; Genetics; Phenotype; Gene knockdown; Model organism; Neural development; Conserved sequence; Cell biology; Morpholino; Axon; Peptide sequence; Neuroscience","retraction":null,"screen_n_in":null,"score":{"opus":0.01244849767457096,"gpt":0.2054875231460522,"spread":0.1930390254714812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003247992,0.0004520544,0.0004827222,0.00006200862,0.000253405,0.00003363113,0.0009448497,0.001064408,0.000007904336],"category_scores_gemma":[0.00004849512,0.0003767434,0.0003997351,0.00007602185,0.0001494774,0.000002549796,0.000345021,0.0002535865,0.00001224597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000131272,"about_ca_system_score_gemma":0.000850868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007366813,"about_ca_topic_score_gemma":0.00008462728,"domain_scores_codex":[0.9976122,0.00009231335,0.0006262453,0.0006607169,0.0004337245,0.0005747647],"domain_scores_gemma":[0.9981208,0.00001827574,0.0004224004,0.001049209,0.0003290604,0.00006021392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000697296,0.00008962937,0.0002864972,0.002572915,0.0006838078,0.00002436828,0.0009517384,0.0006718195,0.2059858,0.00002739363,0.7861003,0.002535918],"study_design_scores_gemma":[0.0006135326,0.000133233,0.0006008797,0.0001110207,0.0002256518,0.00005906507,0.00005908178,0.000009872299,0.3639243,0.00004091752,0.6336436,0.0005788559],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7287815,0.01118227,0.1089951,0.126138,0.01265084,0.007449663,0.00169672,0.0003020104,0.002803944],"genre_scores_gemma":[0.5693303,0.0002121948,0.06232323,0.3345716,0.01383018,0.001060159,0.003227987,0.0007843582,0.01465993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2084336,"threshold_uncertainty_score":0.9998685,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2172253011","doi":"10.1002/gene.20001","title":"Unexpected embryonic stem (ES) cell mutations represent a concern in gene targeting: Lessons from “fierce” mice","year":2004,"lang":"en","type":"article","venue":"genesis","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"National Institute of Mental Health","keywords":"Biology; Phenotype; Gene targeting; Embryonic stem cell; Genetics; Gene; Gene knockout; Mutation; Gene knockin; Knockout mouse","retraction":null,"screen_n_in":null,"score":{"opus":0.02688755641579154,"gpt":0.2878321851573724,"spread":0.2609446287415808,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741663,0.0002053195,0.0002116192,0.0001003421,0.0001112888,0.00003835967,0.0003805051,0.0002086135,0.00004666544],"category_scores_gemma":[0.00004908138,0.0002192685,0.0001191508,0.0002920218,0.00007873362,0.000005933517,0.0002362351,0.0001364676,0.0001179662],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001039778,"about_ca_system_score_gemma":0.0002850149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001194836,"about_ca_topic_score_gemma":0.0004027382,"domain_scores_codex":[0.9980761,0.0001558753,0.0003063657,0.0007159002,0.0002691309,0.0004766147],"domain_scores_gemma":[0.9990578,0.00003455045,0.00009560238,0.0005504002,0.0001120901,0.0001496044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005517529,0.0001323592,0.002388768,0.00001558174,0.00004389487,0.00004544836,0.0002213486,0.005280661,0.9910234,0.000009552014,0.0005067717,0.0002770918],"study_design_scores_gemma":[0.001339192,0.00006888141,0.007340573,0.00001490585,0.00002236199,0.000005685908,0.0005709804,0.0001540248,0.9871392,0.00005889006,0.003018676,0.0002666658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922521,0.004640428,0.001287389,0.000810739,0.0001172415,0.0003231379,0.0001153308,0.00002849784,0.0004251913],"genre_scores_gemma":[0.9956068,0.000656426,0.001544889,0.00009304571,0.0001700795,0.0000818399,0.0005186946,0.00004405644,0.001284133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005126636,"threshold_uncertainty_score":0.8941511,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159651141","doi":"10.1002/dvg.20294","title":"Increased bone mass in male and female mice following tamoxifen administration","year":2007,"lang":"en","type":"article","venue":"genesis","topic":"Estrogen and related hormone effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Bone and Joint Health Institute; University of Calgary","funders":"","keywords":"Tamoxifen; Endocrinology; Internal medicine; Bone mass; Cortical bone; Trabecular bone; Phenotype; Skeleton (computer programming); Medicine; Osteoporosis; Biology; Anatomy; Cancer; Gene; Breast cancer","retraction":null,"screen_n_in":null,"score":{"opus":0.005871173413367512,"gpt":0.2387872096018719,"spread":0.2329160361885044,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003123654,0.0001003487,0.00009936845,0.00004869125,0.00004620506,0.00001336605,0.00004954658,0.0001748925,0.000005483897],"category_scores_gemma":[0.00003242607,0.0001008235,0.00005236931,0.00008799652,0.00002123893,0.000003508549,0.00002711231,0.0000520903,0.000007288093],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001019382,"about_ca_system_score_gemma":0.00003389529,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005728949,"about_ca_topic_score_gemma":0.0000603799,"domain_scores_codex":[0.9993238,0.00003424029,0.0001472193,0.0002233025,0.00007083564,0.000200567],"domain_scores_gemma":[0.9997327,0.0000149126,0.00003563531,0.0001258301,0.00001236899,0.00007854626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001105259,0.00002802647,0.04708563,0.00001100959,0.00002215159,0.00008645034,0.00002804439,0.000003063125,0.9512275,0.000006917874,0.00006293086,0.00132772],"study_design_scores_gemma":[0.0007586528,0.0002002923,0.04984606,0.000014145,0.00002915602,0.00006905582,0.0001142512,0.0000290165,0.9477618,0.00001388353,0.0009855955,0.0001780547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953287,0.003034496,0.0003912408,0.0000358859,0.00006896065,0.0001270908,0.000002582,0.000008625831,0.001002377],"genre_scores_gemma":[0.997911,0.0001320109,0.001353052,0.00008389822,0.00008138762,0.000007484972,0.00005112161,0.0000140404,0.0003659868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003465692,"threshold_uncertainty_score":0.4111463,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059289294","doi":"10.1002/dvg.20727","title":"A phenotype‐driven ENU mutagenesis screen identifies novel alleles with functional roles in early mouse craniofacial development","year":2011,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"National Institute of Dental and Craniofacial Research; Stowers Institute for Medical Research","keywords":"Neural crest; Biology; Ectoderm; Craniofacial; Cell biology; Morphogenesis; Mesoderm; Endoderm; Cranial neural crest; Neural tube; Germ layer; Phenotype; Population; Genetics; Anatomy; Cellular differentiation; Embryonic stem cell; Embryogenesis; Embryo; Induced pluripotent stem cell","retraction":null,"screen_n_in":null,"score":{"opus":0.01797712424594987,"gpt":0.1991253641100032,"spread":0.1811482398640533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001274882,0.0001959427,0.0001499233,0.000145456,0.0001270984,0.00001469545,0.0001490589,0.0001794423,0.00006682716],"category_scores_gemma":[0.00001028809,0.0001769161,0.00004675263,0.0001581869,0.00009056629,0.00001084422,0.00009624931,0.0000441337,0.00004226279],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001912674,"about_ca_system_score_gemma":0.0001123505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00011816,"about_ca_topic_score_gemma":0.001289723,"domain_scores_codex":[0.9989559,0.00003529964,0.0002088398,0.0004036703,0.0001402607,0.0002560093],"domain_scores_gemma":[0.9996145,0.000005109519,0.00007333254,0.0001762683,0.00006953694,0.00006120293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006340378,0.0001665773,0.2356706,0.0000118679,0.0001995226,0.000005068869,0.0006932946,0.0001341345,0.7551172,0.00002944604,0.0002040253,0.007134165],"study_design_scores_gemma":[0.000503051,0.00006513733,0.6449654,0.000006542159,0.0000121557,0.000005962042,0.000114464,0.00000466371,0.3527126,0.000008884544,0.001393557,0.0002076504],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946643,0.0002179568,0.004488615,0.00001985387,0.00007485081,0.0001670264,0.00001761754,0.00002011871,0.0003296971],"genre_scores_gemma":[0.9892411,0.00007649434,0.009151651,0.00007958924,0.0000813422,0.0000618087,0.0002733921,0.00002368227,0.001010923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4092948,"threshold_uncertainty_score":0.7214431,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170601648","doi":"10.1002/dvg.20794","title":"Mouse transgenic lines that selectively label type I, type IIa, and types IIX+B skeletal muscle fibers","year":2011,"lang":"en","type":"letter","venue":"genesis","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; Canadian Institutes of Health Research","keywords":"Motor unit; Fiber type; Denervation; Genetically modified mouse; Skeletal muscle; Biology; Fiber; Endocrinology; Internal medicine; Anatomy; Transgene; Neuroscience; Chemistry; Biochemistry; Gene; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.02303889114654643,"gpt":0.2387851607545899,"spread":0.2157462696080435,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007171945,0.0003745293,0.0003179521,0.00007228478,0.0001212501,0.00001706975,0.0002567349,0.001034366,0.0001589378],"category_scores_gemma":[0.00003324409,0.0003575602,0.0001189431,0.0001176605,0.0001716865,0.000005432389,0.0000871197,0.0003355505,0.00006062644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008907597,"about_ca_system_score_gemma":0.0001341902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001484718,"about_ca_topic_score_gemma":0.00008106954,"domain_scores_codex":[0.9985474,0.0001043443,0.0001695814,0.0006655548,0.0001081987,0.0004048607],"domain_scores_gemma":[0.9992777,0.00002088335,0.00009918751,0.000408982,0.0001274995,0.00006571368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002891562,0.0000866609,0.0006255886,0.0002252659,0.0006450608,0.00001389595,0.0001574971,0.000006229052,0.2630148,0.000005171542,0.7266692,0.008261466],"study_design_scores_gemma":[0.0007809257,0.000847325,0.005111425,0.00001877679,0.0002854718,0.00001196068,0.00003433726,0.000007684846,0.04099571,0.0001566981,0.9508137,0.0009359538],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9789737,0.01236672,0.00004184836,0.006627957,0.0006024298,0.0003111882,0.00009986207,0.00005324573,0.0009230762],"genre_scores_gemma":[0.6416582,0.02090642,0.001831694,0.2891276,0.006119287,0.0001344856,0.004735997,0.0005222309,0.03496406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3373154,"threshold_uncertainty_score":0.9998876,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031911340","doi":"10.1002/gene.10106","title":"The porcine <i>SRY</i> promoter is transactivated within a male genital ridge environment","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Université de Montréal","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Testis determining factor; Biology; Transgene; Gonadal ridge; SOX9; Molecular biology; Y chromosome; Genetically modified mouse; Transgenesis; Green fluorescent protein; Sertoli cell; Gene; Gene expression; Genetics; Embryogenesis; Endocrinology; Spermatogenesis","retraction":null,"screen_n_in":null,"score":{"opus":0.01231009916372727,"gpt":0.2089021207002709,"spread":0.1965920215365436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009330365,0.0001570541,0.0001106003,0.00001190976,0.0002046299,0.00003622024,0.0001969861,0.0001069097,0.001002651],"category_scores_gemma":[0.000009733891,0.0001100522,0.0001176914,0.00002845785,0.0001250466,0.000003804293,0.00004468558,0.00006207524,0.0001610562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006914594,"about_ca_system_score_gemma":0.000009246262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007168429,"about_ca_topic_score_gemma":0.000004634122,"domain_scores_codex":[0.9990117,0.0000399424,0.0002601085,0.0002851018,0.0001673257,0.0002358288],"domain_scores_gemma":[0.9994927,0.00001244855,0.0000692876,0.0003069626,0.0000277578,0.00009084531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002896481,0.0008426732,0.005088602,0.00006538795,0.0004360732,0.0000516931,0.001840262,0.00009994773,0.8739116,0.00009082763,0.03091909,0.08636416],"study_design_scores_gemma":[0.0009376933,0.0006347864,0.00389021,0.00000763097,0.00005599675,0.0001030559,0.0004304255,0.0003380521,0.7894138,0.0000888157,0.2037022,0.0003973099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940664,0.001498162,0.0001998454,0.00153736,0.0001020329,0.0001604959,0.00003632584,0.00001309089,0.002386318],"genre_scores_gemma":[0.9652983,0.0008989125,0.0002192441,0.0009488293,0.0001556919,0.00003532945,0.0000224606,0.00001828345,0.03240297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1727831,"threshold_uncertainty_score":0.9999106,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019509964","doi":"10.1002/gene.1026","title":"Low levels of <i>Sry</i> transcripts cannot be the sole cause of B6‐Y<sup>TIR</sup> sex reversal","year":2001,"lang":"en","type":"letter","venue":"genesis","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Testis determining factor; Biology; Y chromosome; Sex reversal; Gonad; Autosome; X chromosome; Sexual differentiation; Genetics; Molecular biology; Gene; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.02722547959404955,"gpt":0.2554404775021242,"spread":0.2282149979080747,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002032239,0.0003872336,0.0005696816,0.00005528162,0.00009436388,0.00001998753,0.0006553818,0.0008188656,0.0002782832],"category_scores_gemma":[0.00004549646,0.0003010973,0.0004472511,0.00009989258,0.0004035747,0.000004543736,0.0001168425,0.0003483756,0.000006657253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001217765,"about_ca_system_score_gemma":0.0002023671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002133881,"about_ca_topic_score_gemma":0.00006676139,"domain_scores_codex":[0.9977496,0.0001605975,0.0007423039,0.0004993263,0.0004326378,0.0004155547],"domain_scores_gemma":[0.998539,0.00006321268,0.0003428288,0.0007495959,0.0002307202,0.00007460529],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008997585,0.0001829505,0.0006370405,0.0006723672,0.0005986581,0.00008564079,0.0008044011,0.0001545636,0.05374368,0.000007705272,0.9375429,0.005480102],"study_design_scores_gemma":[0.0006339601,0.0004536573,0.0007147921,0.00007626738,0.000282327,0.00005024256,0.0006052721,0.00001749826,0.3020332,0.00004413376,0.6946229,0.0004657677],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8724232,0.003164109,0.0002719733,0.115945,0.000516304,0.0006832057,0.002359425,0.00003187967,0.004604951],"genre_scores_gemma":[0.7591289,0.001777585,0.000211989,0.1765789,0.002722805,0.00005589028,0.0006629926,0.0001057748,0.05875521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2482895,"threshold_uncertainty_score":0.9999441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1583092199","doi":"10.1002/dvg.22421","title":"Characterization of a novel transgenic mouse line expressing Cre recombinase under the control of the <i>Cdx2</i> neural specific enhancer","year":2013,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"Canadian Institutes of Health Research","keywords":"Cre recombinase; Rhombomere; Neuroectoderm; Biology; Neural tube; Transgene; Hindbrain; Fate mapping; Genetically modified mouse; Enhancer; Neurulation; Neural plate; Neural crest; Cre-Lox recombination; Cell biology; Enhancer trap; Recombinase; Neural fold; Site-specific recombination; Genetics; Embryo; Embryonic stem cell; Mesoderm; Gene; Gene expression; Hox gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01152989623527625,"gpt":0.2133734621625657,"spread":0.2018435659272894,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000853222,0.00009190381,0.0001045964,0.00001377857,0.00007164267,0.000006725974,0.0001496942,0.00009657649,0.00003680516],"category_scores_gemma":[0.00000543881,0.00005629536,0.00008561833,0.00007170635,0.0001040621,0.000005615581,0.0000314331,0.00003327136,0.000001732889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000520274,"about_ca_system_score_gemma":0.00002604225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001224789,"about_ca_topic_score_gemma":0.000007384579,"domain_scores_codex":[0.9994002,0.00006414501,0.0002114141,0.0001497441,0.00006710782,0.0001073697],"domain_scores_gemma":[0.9995246,0.00001037878,0.0001362505,0.0002379599,0.00007328167,0.00001755837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004165062,0.00005002759,0.0007681624,0.000008523892,0.00003283788,1.042233e-8,0.00005201785,0.0001346035,0.9947579,0.000007766969,0.00003977287,0.004106752],"study_design_scores_gemma":[0.0004751848,0.00003729527,0.05775511,0.000007197201,0.00001450014,0.000001477296,0.00005642386,0.0001120142,0.9411047,0.00000949673,0.000360925,0.00006565986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903271,0.0003052063,0.008486406,0.0004167619,0.0001409911,0.0002704345,0.000027386,0.000003443525,0.00002232256],"genre_scores_gemma":[0.9989557,0.000118285,0.0001200297,0.0002227699,0.00006018321,0.00002987893,0.00007348455,0.000009900482,0.0004097204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05698694,"threshold_uncertainty_score":0.2295658,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1972330951","doi":"10.1002/gene.10158","title":"Conservation of the function of <i>DMRT1</i> regulatory sequences in mammalian sex differentiation","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Transgene; Green fluorescent protein; Cre recombinase; Molecular biology; Embryonic stem cell; Gonadal ridge; Genetically modified mouse; Embryo; Cell biology; Transgenesis; Gene; Embryogenesis; Genetics; Reproductive technology","retraction":null,"screen_n_in":null,"score":{"opus":0.01472876419427965,"gpt":0.2168739813401676,"spread":0.202145217145888,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007852444,0.00005823658,0.00008708832,0.00001980042,0.0000251544,0.000003256856,0.00009284698,0.00007216995,0.00008502309],"category_scores_gemma":[0.0000224121,0.00004464327,0.00006074025,0.0000615084,0.00008385147,0.000003284943,0.00002893063,0.00002250401,0.000001366053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004077839,"about_ca_system_score_gemma":0.00001111432,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003389041,"about_ca_topic_score_gemma":0.00007233772,"domain_scores_codex":[0.9994153,0.00005265222,0.000242376,0.0001109117,0.0001100231,0.00006878536],"domain_scores_gemma":[0.9996363,0.000009750243,0.0001292661,0.000156686,0.00005295731,0.00001502543],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004051106,0.0001546591,0.3002469,0.00008840399,0.00002839036,2.439608e-7,0.0002141554,0.0001024091,0.6854185,0.000293825,0.0009479922,0.01246395],"study_design_scores_gemma":[0.0002528492,0.0001151916,0.534332,0.00001345085,0.00001438038,9.827037e-7,0.0002447571,0.0001184973,0.4636378,0.0002092344,0.000999299,0.0000615558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984885,0.0003388816,0.00005724662,0.000210531,0.0001161824,0.00006952835,0.000006214675,0.000002385708,0.000710474],"genre_scores_gemma":[0.9975775,0.0001141691,0.0000403927,0.0001635069,0.00003769036,0.000006194255,0.000009551277,0.000004021833,0.002046904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2340851,"threshold_uncertainty_score":0.18205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1609896877","doi":"10.1002/dvg.20292","title":"Comparative analysis of <i>Hoxa5</i> allelic series","year":2007,"lang":"en","type":"article","venue":"genesis","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Homeotic gene; Biology; Hox gene; Allele; Null allele; Genetics; Mutation; Mutant; Phenotype; Gene; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.01762528479360916,"gpt":0.2940302119917841,"spread":0.2764049271981749,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002399099,0.0000824997,0.0001847823,0.0001061052,0.00003570346,0.000005335262,0.00008574318,0.00007599112,0.00002443188],"category_scores_gemma":[0.00001464589,0.00008008032,0.0001262782,0.0003413872,0.00004796672,0.000001655852,0.00003771671,0.0000184416,0.000003247919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004660882,"about_ca_system_score_gemma":0.00001821081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004181027,"about_ca_topic_score_gemma":0.0003671988,"domain_scores_codex":[0.999366,0.00002673307,0.0002014831,0.0001751255,0.00009931554,0.0001313127],"domain_scores_gemma":[0.9995148,0.00001339819,0.00008717629,0.0002313292,0.0001082312,0.00004506436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005173618,0.00003035195,0.02469859,0.00000444484,0.000476855,5.029806e-7,0.0001357534,0.0008718049,0.9720328,0.00007631195,0.0000941034,0.001526746],"study_design_scores_gemma":[0.00008982915,0.00009177777,0.1362008,9.307918e-7,0.0002014357,2.02886e-7,0.00012898,0.00003367817,0.8487714,0.00002847609,0.01436577,0.00008673076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983009,0.002659727,0.01107246,0.00002145674,0.00004851255,0.0000566676,0.00001653396,0.000004828955,0.003110786],"genre_scores_gemma":[0.9969061,0.0003559577,0.002097569,0.00003993221,0.0000615685,0.000002812771,0.0001290639,0.000005412067,0.0004016073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1232614,"threshold_uncertainty_score":0.3265581,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1998665750","doi":"10.1002/dvg.20260","title":"Complex interference in the eye developmental pathway by <i>Drosophila</i> NF‐YA","year":2007,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Petroleum Technology Research Centre","keywords":"Gene knockdown; Phenotype; Biology; Mutant; Gene; Genetics; Gene expression; Drosophila melanogaster; Cell biology; Molecular biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01428452579607461,"gpt":0.24684417901967,"spread":0.2325596532235954,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004263208,0.0001305693,0.00008985865,0.00003186097,0.00009245853,0.00001223711,0.0002412405,0.0001285535,0.00002815936],"category_scores_gemma":[0.00001692961,0.0001016453,0.00003773032,0.000120651,0.00007843036,0.000003140897,0.00008525606,0.00005302372,0.00003827518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002285081,"about_ca_system_score_gemma":0.00004143844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001890625,"about_ca_topic_score_gemma":0.0001211598,"domain_scores_codex":[0.9991401,0.00005634673,0.0002093879,0.0002646139,0.00008262037,0.0002469284],"domain_scores_gemma":[0.9997402,0.00001509813,0.00004543749,0.0001423276,0.00002125717,0.00003562746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005919577,0.00004725416,0.03831195,0.000003874485,0.0000148503,0.000003353265,0.0001506,0.000001613317,0.9409708,0.00002642253,0.00389915,0.01651092],"study_design_scores_gemma":[0.0002700076,0.00007239722,0.2557346,0.000005178259,0.000003292902,0.00002347861,0.0003500409,0.00000289759,0.664658,0.0000643595,0.07861675,0.0001990857],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939463,0.0005006447,0.0009126757,0.0002316184,0.0000976715,0.0001413127,0.00001673615,0.000008336201,0.004144757],"genre_scores_gemma":[0.9966131,0.00006501859,0.0009775789,0.001230578,0.00006792667,0.00001540139,0.000430356,0.000008802905,0.0005911912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2763129,"threshold_uncertainty_score":0.4144975,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2056290552","doi":"10.1002/gene.10128","title":"GAL4 drivers expression in the whole adult fly","year":2002,"lang":"en","type":"article","venue":"genesis","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Queen (butterfly); Citation; Drosophila (subgenus); Biology; Library science; Genetics; Gene; Computer science; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.01405396809292082,"gpt":0.2035173576094918,"spread":0.189463389516571,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001915849,0.000121588,0.0001353659,0.00009397687,0.0001621384,0.00001265545,0.0003409496,0.0001745149,0.001526882],"category_scores_gemma":[0.00005066297,0.00008466164,0.0000641388,0.0001658771,0.00006585147,0.00006140317,0.00005542352,0.0001561373,0.005199507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002593693,"about_ca_system_score_gemma":0.00000988716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005838964,"about_ca_topic_score_gemma":0.00002035291,"domain_scores_codex":[0.9988866,0.0004222598,0.0001609823,0.0001953875,0.00003919291,0.000295577],"domain_scores_gemma":[0.9994731,0.0000875402,0.00004566956,0.0003553193,0.00003006842,0.000008306418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003451348,0.00006825187,0.000292417,0.000003641735,0.00001305997,0.00001414053,0.002340056,0.000004104596,0.9653566,0.0001699124,0.02654243,0.005160886],"study_design_scores_gemma":[0.001142125,0.0001005413,0.004671551,0.00003265402,0.00001878772,0.00006922111,0.002492434,0.00005748857,0.9243875,0.0001205285,0.06670856,0.0001986024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929174,0.002786567,0.0002035673,0.001151303,0.0005534981,0.0002139572,0.000009962642,0.0000563338,0.002107389],"genre_scores_gemma":[0.9931651,0.0001680523,0.0001327657,0.0009626371,0.00001747923,0.00004046193,0.00001580536,0.00001363994,0.005484086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04096909,"threshold_uncertainty_score":0.9993858,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1515976390","doi":"10.1002/dvg.22370","title":"GABAergic neurons regulate lateral ventricular development via transcription factor <i>Pax5</i>","year":2013,"lang":"en","type":"article","venue":"genesis","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Emergent BioSolutions (Canada)","funders":"National Institute of Mental Health","keywords":"GABAergic; Biology; Conditional gene knockout; PAX5; Transgene; Transcription factor; Genetics; Phenotype; Neuroscience; Gene; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.008188950448931765,"gpt":0.191529509617988,"spread":0.1833405591690562,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003754458,0.0002207803,0.0001290228,0.00005130949,0.0001281247,0.00004276002,0.0001820623,0.000110077,0.0001795413],"category_scores_gemma":[0.000004867995,0.0002147726,0.00009941963,0.0001018193,0.00003176167,0.000006317822,0.00007488186,0.00004958314,0.0001881781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001515531,"about_ca_system_score_gemma":0.00004816057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003043375,"about_ca_topic_score_gemma":0.00001645562,"domain_scores_codex":[0.9987716,0.00004177195,0.0002466202,0.0004189042,0.0001667191,0.0003543559],"domain_scores_gemma":[0.9995051,0.000002427269,0.00005345953,0.000252774,0.00005747737,0.0001287321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000117578,0.00004820028,0.003541666,0.00001496924,0.00003783806,0.000005650913,0.000066626,0.00006619519,0.9813218,0.000001095137,0.001144427,0.0137398],"study_design_scores_gemma":[0.0003948182,0.00007995318,0.4291257,0.000005159169,0.00001206654,0.00002470345,0.00001343692,0.00004740054,0.5430176,0.00002643447,0.02693614,0.0003166884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976613,0.0006227411,0.0008104217,0.0001591481,0.0002391658,0.0003025292,0.000007048673,0.00002494311,0.000172691],"genre_scores_gemma":[0.9969779,0.0002005204,0.001036982,0.0005144781,0.00003142061,0.00007705487,0.0001342119,0.00003861683,0.0009888338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4383042,"threshold_uncertainty_score":0.8758172,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967138723","doi":"10.1002/dvg.20404","title":"Development of a gene‐trap vector with a highly sensitive fluorescent protein reporter system for expression profiling","year":2008,"lang":"en","type":"article","venue":"genesis","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Agence Nationale pour la Gestion des Déchets Radioactifs","keywords":"Biology; Reporter gene; Gene; Embryonic stem cell; Genetics; Mutagenesis; Gene expression; Molecular biology; Computational biology; Gene expression profiling; Cell biology; Mutation","retraction":null,"screen_n_in":null,"score":{"opus":0.01177110158858761,"gpt":0.2306453183292792,"spread":0.2188742167406916,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001575887,0.0001510265,0.0002106938,0.00005501483,0.00009782956,0.000005942677,0.00008518503,0.00009080776,8.389896e-7],"category_scores_gemma":[0.00001836294,0.0001210923,0.00009371519,0.0000778991,0.00004085337,0.000003177057,0.00004487884,0.00002259238,7.957848e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000334791,"about_ca_system_score_gemma":0.0001637545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009510167,"about_ca_topic_score_gemma":0.000008705705,"domain_scores_codex":[0.9989246,0.00003205533,0.00032694,0.0003754262,0.0001617609,0.0001792595],"domain_scores_gemma":[0.9991289,0.000004015017,0.0002103805,0.0003471421,0.0002603564,0.00004921447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002033146,0.00005005791,0.0003745824,0.0001192222,0.00009515569,0.00002126755,0.0001506033,0.000004952487,0.9983156,0.000001420614,0.0001687383,0.0004951015],"study_design_scores_gemma":[0.0002649201,0.0001223276,0.0005429708,0.00007690479,0.00003644454,0.00005135831,0.0001473736,0.00003050563,0.997784,2.513788e-7,0.000777889,0.0001650654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9323507,0.000111568,0.06669036,0.000006037266,0.000008256499,0.0007294353,0.000005259939,0.00003226147,0.00006614033],"genre_scores_gemma":[0.7570294,0.00000587594,0.2423991,0.00000944198,0.0000522009,0.0002823973,0.00008262574,0.00002285093,0.000116129],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1757087,"threshold_uncertainty_score":0.4938001,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2023017320","doi":"10.1002/dvg.20282","title":"Cre‐conditional expression of constitutively active Notch1 in transgenic mice","year":2007,"lang":"en","type":"article","venue":"genesis","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Cre recombinase; Transgene; Biology; Genetically modified mouse; Notch signaling pathway; Cell biology; Embryonic stem cell; Molecular biology; Cre-Lox recombination; Neural tube; Embryo; Green fluorescent protein; Signal transduction; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.007572522883307811,"gpt":0.2484434802457533,"spread":0.2408709573624455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001488879,0.000076907,0.00008628766,0.0000566147,0.00003277913,0.000001219862,0.00006546688,0.0001411716,0.00004364438],"category_scores_gemma":[0.00001534774,0.0000755022,0.00004501487,0.00007577371,0.0001010978,0.000003350228,0.00002224445,0.00002958165,0.000005791208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001237869,"about_ca_system_score_gemma":0.00006198543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001024944,"about_ca_topic_score_gemma":0.00006189105,"domain_scores_codex":[0.9994382,0.0000271205,0.0001659116,0.0001795289,0.00006033563,0.0001289057],"domain_scores_gemma":[0.9997931,0.00001509957,0.00005241448,0.000073265,0.00003706793,0.00002906019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002603286,0.00004292463,0.01153803,0.000006643987,0.00001591369,8.68247e-7,0.00006464506,0.00004025756,0.9836551,0.0000568504,0.0001215275,0.004196886],"study_design_scores_gemma":[0.000297759,0.00003356354,0.2698115,0.000006805793,0.000003925848,0.000003981865,0.00007508104,9.372173e-7,0.7278638,0.00005985308,0.001775943,0.00006680821],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934645,0.0002659478,0.004615732,0.00002545237,0.00008626327,0.00009411544,0.0000400818,0.000003381693,0.001404585],"genre_scores_gemma":[0.998023,0.00004761359,0.001374584,0.00006382088,0.00005435796,0.000006301049,0.0002573175,0.000004503883,0.0001684898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2582735,"threshold_uncertainty_score":0.307889,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}