{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":25,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":25,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e5c4fcf157f0","filters":{"venue":"npj Antimicrobials and Resistance"}},"results":[{"id":"W4384559034","doi":"10.1038/s44259-023-00007-2","title":"Molecular mechanisms governing antifungal drug resistance","year":2023,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":265,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Government of Canada; Canadian Institute for Advanced Research; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Candida auris; Drug resistance; Antifungal drug; Antifungal drugs; Multiple drug resistance; Cryptococcus neoformans; Cryptococcus; Fluconazole; Aspergillus; Cryptococcosis; Antifungal; Microbiology","authors":[{"name":"Yunjin Lee","is_ca":true},{"name":"Nicole Robbins","is_ca":true},{"name":"Leah E. Cowen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03335770316327258,"gpt":0.3214349357411915,"spread":0.2880772325779189,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002823112,0.0005821424,0.0008214551,0.001499791,0.0002326562,0.001103912,0.0006946036,0.0009157896,0.002978753],"category_scores_gemma":[0.0004468562,0.0002314312,0.0004776867,0.000995709,0.0004165259,0.0008343069,0.0005128637,0.001398945,0.001515211],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006600969,"about_ca_system_score_gemma":0.0007546074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005678231,"about_ca_topic_score_gemma":0.0007123808,"domain_scores_codex":[0.9998006,0.00003318594,0.0000241627,0.00003735368,0.0000783993,0.00002625672],"domain_scores_gemma":[0.999837,0.00005565291,0.00003522009,0.000006750987,0.00005264716,0.0000126741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001078067,0.00009954684,0.0004703514,0.0215717,0.0001548904,0.0006962661,0.0001274599,0.001080606,0.02162759,0.01915555,0.02891092,0.9059974],"study_design_scores_gemma":[0.00001884464,0.0001229567,0.001479609,0.002884641,0.0001259595,0.002725065,0.00007165337,0.0003744404,0.00673835,0.005660005,0.9797686,0.00003008498],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005138287,0.995717,0.0003920849,0.0003963316,0.0001928974,0.000008817285,0.00004011466,0.0000167382,0.002722225],"genre_scores_gemma":[0.005815453,0.9919313,0.0003408126,0.0002988362,0.0001580309,0.00001242446,0.00008379665,0.000002388565,0.001357039],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002978753,"threshold_uncertainty_score":0.009964883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404148966","doi":"10.1038/s44259-024-00055-2","title":"A one health roadmap towards understanding and mitigating emerging Fungal Antimicrobial Resistance: fAMR","year":2024,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Wellcome; Imperial College London; Research Councils UK; Medical Research Council Centre for Medical Mycology; Leverhulme Trust; Cystic Fibrosis Trust; Department of Health and Social Care; National Institute for Health and Care Research; Sight Research UK; Wellcome Trust; Canadian Institute for Advanced Research","keywords":"Antibiotic resistance; Antimicrobial; Resistance (ecology); Biology; Microbiology; Ecology; Antibiotics","authors":[{"name":"Matthew C. Fisher","is_ca":false},{"name":"F. J. Burnett","is_ca":false},{"name":"Clare Chandler","is_ca":false},{"name":"Neil A. R. Gow","is_ca":false},{"name":"Sarah J. Gurr","is_ca":false},{"name":"Alwyn Hart","is_ca":false},{"name":"Alison Holmes","is_ca":false},{"name":"Robin C. May","is_ca":false},{"name":"Janet Quinn","is_ca":false},{"name":"Tarek Soliman","is_ca":false},{"name":"Nicholas J. Talbot","is_ca":false},{"name":"Helen West","is_ca":false},{"name":"Jonathan West","is_ca":false},{"name":"P. Lewis White","is_ca":false},{"name":"Michael Bromley","is_ca":false},{"name":"Darius Armstrong‐James","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08743561233188347,"gpt":0.3629542650841333,"spread":0.2755186527522498,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002662827,0.001047871,0.001556618,0.003265906,0.0005038103,0.00224915,0.001468032,0.003045198,0.01388625],"category_scores_gemma":[0.003354022,0.0003481201,0.001498494,0.002354949,0.0008542378,0.003997488,0.001645965,0.004699128,0.004451297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001654288,"about_ca_system_score_gemma":0.005512141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001978727,"about_ca_topic_score_gemma":0.003898485,"domain_scores_codex":[0.9990599,0.0002504202,0.0001032028,0.00009973328,0.0003664707,0.0001202488],"domain_scores_gemma":[0.9966348,0.001712976,0.0003117727,0.00009772461,0.0009951078,0.0002476084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008141312,0.0001229861,0.0001353517,0.03327645,0.0001173001,0.0001471335,0.0001044997,0.0004122815,0.001377551,0.01502416,0.08759026,0.8616106],"study_design_scores_gemma":[0.00001314839,0.0001078922,0.0003208347,0.0111665,0.0001006578,0.0003105597,0.00009207658,0.00009160092,0.0001625579,0.004228932,0.9833899,0.00001539673],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009586859,0.9910688,0.0003778703,0.004167866,0.001093604,0.00001971461,0.00005951776,0.00004087472,0.003075797],"genre_scores_gemma":[0.0008968233,0.9943479,0.0009174817,0.001994024,0.0004675043,0.00001990187,0.0001024898,0.000006126211,0.001247746],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01388625,"threshold_uncertainty_score":0.04645413,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408418702","doi":"10.1038/s44259-025-00085-4","title":"How AI can help us beat AMR","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Machine Learning in Healthcare","field":"Computer Science","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Weston Family Foundation","keywords":"Beat (acoustics); Computer science; Speech recognition; Acoustics; Physics","authors":[{"name":"Autumn Arnold","is_ca":true},{"name":"Stewart McLellan","is_ca":true},{"name":"Jonathan Stokes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01834097858702772,"gpt":0.3074078975923656,"spread":0.2890669190053379,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001769654,0.0007597473,0.001017958,0.002456893,0.0005042432,0.002304771,0.0009543951,0.002409347,0.005295468],"category_scores_gemma":[0.004513149,0.0002573539,0.000741147,0.001813252,0.001308837,0.002785766,0.001006031,0.00362839,0.003384356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001087361,"about_ca_system_score_gemma":0.002124716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001813897,"about_ca_topic_score_gemma":0.003321834,"domain_scores_codex":[0.999175,0.0002797065,0.00008371834,0.0001081883,0.0003006948,0.00005266236],"domain_scores_gemma":[0.9973302,0.001955326,0.0001347906,0.00008120717,0.0003978114,0.0001005946],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00003887016,0.00005852484,0.0002667511,0.01535024,0.0001524076,0.0001257179,0.0001811941,0.000654877,0.0005444655,0.03755342,0.06263715,0.8824365],"study_design_scores_gemma":[0.000009960313,0.00005483729,0.0004689638,0.008095083,0.00007507774,0.0004383873,0.0001089531,0.0002076804,0.0002194873,0.02821442,0.9620823,0.00002494265],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001000748,0.9879465,0.0007307318,0.006558814,0.0006223422,0.00000778187,0.00003080891,0.00002445136,0.003978529],"genre_scores_gemma":[0.001620121,0.9939939,0.000779806,0.002226964,0.0005351719,0.00001366002,0.00003387149,0.000006422386,0.0007900601],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005295468,"threshold_uncertainty_score":0.01771504,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410862767","doi":"10.1038/s44259-025-00117-z","title":"Re-evaluating what makes a phage unsuitable for therapy","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lytic cycle; Virulence; Phage therapy; Bacteriophage; Antibiotic resistance; Virology; Biology; Microbiology; Antibiotics; Genetics; Virus","authors":[{"name":"Bradley W. M. Cook","is_ca":false},{"name":"Alexander P. Hynes","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05375561458492718,"gpt":0.3666390963065668,"spread":0.3128834817216397,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003863088,0.0007804277,0.001849529,0.001955973,0.0003393526,0.002724641,0.001110063,0.00236476,0.00305583],"category_scores_gemma":[0.003795573,0.0002967963,0.0009211461,0.0008926828,0.001149287,0.002500293,0.0009875774,0.002922159,0.001898988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009035612,"about_ca_system_score_gemma":0.002150791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001161174,"about_ca_topic_score_gemma":0.002062979,"domain_scores_codex":[0.9986053,0.0004687439,0.0002081577,0.0001581347,0.000482558,0.0000770687],"domain_scores_gemma":[0.9968617,0.002108362,0.0002918327,0.0000936229,0.0005728112,0.00007173758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006622993,0.00006903552,0.000377277,0.02692488,0.0001662669,0.0001957451,0.0002054994,0.0004429675,0.004863262,0.0128834,0.02110951,0.9326959],"study_design_scores_gemma":[0.00001684036,0.0001531529,0.001013103,0.01330465,0.0001968275,0.001085601,0.0003300665,0.0001957676,0.002132164,0.006625945,0.9749062,0.00003964392],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003856767,0.994297,0.0006155155,0.001760762,0.0005250946,0.00001666216,0.00002479957,0.00001529709,0.002359156],"genre_scores_gemma":[0.002989376,0.9926701,0.0009556487,0.001538053,0.0003764768,0.00002054132,0.00004930996,0.000008209576,0.001392224],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003863088,"threshold_uncertainty_score":0.02043015,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408418359","doi":"10.1038/s44259-025-00089-0","title":"Innovative perspectives on the discovery of small molecule antibiotics","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Antibiotics; Computational biology; Data science; Biology; Computer science; Microbiology","authors":[{"name":"Silvia T. Cardona","is_ca":true},{"name":"A. S. M. Zisanur Rahman","is_ca":true},{"name":"Julieta Novomisky Nechcoff","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02461537726406977,"gpt":0.2867273005845705,"spread":0.2621119233205008,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007399899,0.0008142418,0.001098985,0.002109435,0.0002887201,0.001279292,0.0008225858,0.001290065,0.004558632],"category_scores_gemma":[0.0007937302,0.0002576504,0.0006779691,0.001802585,0.0006598215,0.001903152,0.0008037079,0.002651211,0.001997947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006151238,"about_ca_system_score_gemma":0.001027499,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005128671,"about_ca_topic_score_gemma":0.0009609753,"domain_scores_codex":[0.9996741,0.00006280781,0.00002845518,0.0000460378,0.0001477188,0.00004084484],"domain_scores_gemma":[0.9996254,0.0002209465,0.00003071328,0.00001326204,0.00007861248,0.00003095443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000114905,0.0001376201,0.0001330335,0.03219165,0.0001327176,0.0004438154,0.0001464285,0.0008084667,0.007921725,0.03588716,0.03482023,0.8872623],"study_design_scores_gemma":[0.00001886047,0.0001154564,0.0002932847,0.002791617,0.00005604883,0.0006256263,0.00005158096,0.0001268044,0.0007194208,0.006510555,0.9886762,0.0000144765],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001632614,0.9963169,0.0003117018,0.000503703,0.0004087614,0.000005317762,0.00001712763,0.00001024268,0.002262893],"genre_scores_gemma":[0.001067553,0.9973106,0.0002691519,0.0003710279,0.0002484338,0.000007126977,0.00002265893,0.000001595749,0.0007018009],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004558632,"threshold_uncertainty_score":0.01525009,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4406813777","doi":"10.1038/s44259-024-00074-z","title":"Targeting Acinetobacter baumannii resistance-nodulation-division efflux pump transcriptional regulators to combat antimicrobial resistance","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Efflux; Acinetobacter baumannii; Microbiology; Antimicrobial; Antibiotic resistance; Biology; Multiple drug resistance; Drug resistance; Bacteria; Genetics; Antibiotics; Pseudomonas aeruginosa","authors":[{"name":"Ruwani L. Wimalasekara","is_ca":true},{"name":"Dawn White","is_ca":true},{"name":"Ayush Kumar","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0117562275501342,"gpt":0.2744258630350417,"spread":0.2626696354849075,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003108022,0.0006202863,0.0009261673,0.001317438,0.0001622428,0.0007872769,0.0006177197,0.0008427728,0.003202852],"category_scores_gemma":[0.0003502382,0.0002284943,0.0003790509,0.0009713789,0.0002405871,0.0008070024,0.0005404786,0.001528511,0.002052403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004191493,"about_ca_system_score_gemma":0.0006097993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000428235,"about_ca_topic_score_gemma":0.0009228855,"domain_scores_codex":[0.9998881,0.00001559906,0.00001268906,0.00001835234,0.00004806018,0.00001729831],"domain_scores_gemma":[0.9998604,0.00005088769,0.00002384207,0.000004728916,0.00003993481,0.00002016608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008168648,0.00007355742,0.0001130976,0.01438649,0.00008772092,0.000177552,0.00003995573,0.0004082753,0.01082129,0.003367939,0.02432702,0.9461154],"study_design_scores_gemma":[0.00001917621,0.0001124534,0.0006107669,0.001630563,0.00008223102,0.0006941889,0.0000286321,0.0001173742,0.001730655,0.0009641201,0.9939941,0.0000158606],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003143956,0.9972193,0.0002894239,0.0002095144,0.000241234,0.0000078111,0.00002692193,0.0000168024,0.001674501],"genre_scores_gemma":[0.001260876,0.9968593,0.0003260863,0.0001910636,0.00009915816,0.00001082617,0.00006018883,0.000003067121,0.001189336],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003202852,"threshold_uncertainty_score":0.01071459,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4414222406","doi":"10.1038/s44259-025-00154-8","title":"Towards the integration of antibiotic resistance gene mobility into environmental surveillance and risk assessment","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China; China Scholarship Council; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Risk assessment; Antibiotic resistance; Limiting; Environmental risk assessment; Resistance (ecology); Human health; Antibiotics; Risk factor","authors":[{"name":"Uli Klümper","is_ca":false},{"name":"Peiju Fang","is_ca":false},{"name":"Bing Li","is_ca":false},{"name":"Yu Xia","is_ca":false},{"name":"Dominic Frigon","is_ca":true},{"name":"Kerry A. Hamilton","is_ca":false},{"name":"Hunter Quon","is_ca":false},{"name":"Thomas U. Berendonk","is_ca":false},{"name":"Magali de la Cruz Barron","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02413954340997237,"gpt":0.3135310628893089,"spread":0.2893915194793366,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006185707,0.001160509,0.002334688,0.003869604,0.0002604863,0.002957845,0.001337041,0.002211053,0.002430145],"category_scores_gemma":[0.007296057,0.0004556116,0.001558586,0.002951245,0.001148093,0.003147286,0.001607109,0.003239651,0.001020726],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00152118,"about_ca_system_score_gemma":0.004488332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003214166,"about_ca_topic_score_gemma":0.003607994,"domain_scores_codex":[0.9976845,0.0008423153,0.0002669919,0.0002347638,0.0008694736,0.0001019502],"domain_scores_gemma":[0.9930512,0.004647544,0.0006723158,0.0001815274,0.001313627,0.0001338236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002983997,0.00005694278,0.0005099431,0.03154473,0.0002974103,0.0001284238,0.0001778998,0.001106094,0.001687821,0.02390794,0.01024007,0.9303128],"study_design_scores_gemma":[0.00001683427,0.0001703135,0.002244298,0.02560243,0.0005529737,0.00091047,0.0004068367,0.0009483494,0.001414343,0.01825156,0.9494015,0.0000800248],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002232506,0.995083,0.001761476,0.0013013,0.0002340255,0.00001426586,0.00003648854,0.00001489031,0.001331378],"genre_scores_gemma":[0.003057361,0.9926639,0.002948104,0.0005987405,0.0002563606,0.00002076601,0.00005667258,0.000005281656,0.0003929301],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.006185707,"threshold_uncertainty_score":0.03271353,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4406825577","doi":"10.1038/s44259-025-00078-3","title":"A historical perspective on the multifunctional outer membrane channel protein TolC in Escherichia coli","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Escherichia coli; Perspective (graphical); Bacterial outer membrane; Channel (broadcasting); Escherichia coli Proteins; Chemistry; Computer science; Biochemistry; Gene; Computer network; Artificial intelligence","authors":[{"name":"Mandeep Kaur","is_ca":true},{"name":"Laura K. Thompson","is_ca":true},{"name":"Georgina Cox","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02491864694478263,"gpt":0.297882100911621,"spread":0.2729634539668384,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006780803,0.00077535,0.0009058137,0.002700009,0.0004204339,0.001395374,0.0006259994,0.001202643,0.003210161],"category_scores_gemma":[0.001091859,0.0002558932,0.0003546423,0.003525947,0.0007157418,0.001947274,0.0008790093,0.002369449,0.001730561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008776665,"about_ca_system_score_gemma":0.001569422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001226248,"about_ca_topic_score_gemma":0.001798686,"domain_scores_codex":[0.9998159,0.00004225902,0.0000277234,0.0000347478,0.00005848348,0.00002082927],"domain_scores_gemma":[0.9994457,0.0003002547,0.00005463515,0.00001215429,0.0001342282,0.00005286177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001452911,0.00007537714,0.0002195122,0.02787533,0.00008399045,0.0004575263,0.0002792153,0.0004651206,0.002812307,0.01536441,0.1354755,0.8167464],"study_design_scores_gemma":[0.000004205294,0.00004734066,0.0003780791,0.0040289,0.00003745379,0.0005835103,0.00007048815,0.00002516169,0.0001581312,0.00139944,0.9932549,0.00001248515],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006373378,0.9977151,0.00006405734,0.0006314644,0.0007410941,0.000001389972,0.00001035893,0.000003478417,0.0007693911],"genre_scores_gemma":[0.0003757982,0.9980781,0.00008556273,0.000540869,0.000488935,0.000002639472,0.00001509077,0.0000011772,0.0004117912],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003210161,"threshold_uncertainty_score":0.01073903,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4403297499","doi":"10.1038/s44259-024-00045-4","title":"Phage therapy could be key to conquering persistent bacterial lung infections in children","year":2024,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Chulalongkorn University","keywords":"Phage therapy; Intensive care medicine; Medicine; Antibiotics; Antibiotic therapy; Antibiotic resistance; Clinical trial; Immunology; Bacteriophage; Microbiology; Internal medicine; Biology","authors":[{"name":"Aye Mya Sithu Shein","is_ca":false},{"name":"Parichart Hongsing","is_ca":false},{"name":"Aisha Khatib","is_ca":true},{"name":"Phatthranit Phattharapornjaroen","is_ca":false},{"name":"Kazuhiko Miyanaga","is_ca":false},{"name":"Longzhu Cui","is_ca":false},{"name":"Kenji Shibuya","is_ca":false},{"name":"Mohan Amarasiri","is_ca":false},{"name":"Peter N. Monk","is_ca":false},{"name":"Anthony Kicic","is_ca":false},{"name":"Tanittha Chatsuwan","is_ca":false},{"name":"Paul G. Higgins","is_ca":false},{"name":"Shuichi Abe","is_ca":false},{"name":"Dhammika Leshan Wannigama","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01943508672405034,"gpt":0.2953400499451527,"spread":0.2759049632211023,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006593871,0.0005575723,0.001042997,0.001273196,0.0001932686,0.0008262182,0.0004649918,0.001369428,0.004372569],"category_scores_gemma":[0.001012612,0.0001178079,0.0009050929,0.0006056625,0.0003368051,0.0008911118,0.0004642396,0.001756316,0.001082877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003554279,"about_ca_system_score_gemma":0.001076888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007750589,"about_ca_topic_score_gemma":0.001601355,"domain_scores_codex":[0.9997916,0.00006216632,0.0000256884,0.00002996824,0.0000624344,0.00002812547],"domain_scores_gemma":[0.9996445,0.0001903131,0.00005908424,0.00001163957,0.00006641068,0.00002802231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001384994,0.0001041451,0.000364054,0.02788752,0.0002000679,0.0002205047,0.00005659786,0.0002138843,0.003391659,0.003573905,0.01347068,0.9503785],"study_design_scores_gemma":[0.00007235138,0.0004288651,0.002947528,0.02207698,0.0005630904,0.00230369,0.0002097868,0.0001520548,0.002378335,0.003539588,0.965295,0.00003276048],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002131254,0.9983589,0.0001524137,0.0003989706,0.0001625198,0.000006501672,0.00001328085,0.00000796698,0.0006862509],"genre_scores_gemma":[0.00255091,0.9959368,0.0003768681,0.0003535815,0.0001646342,0.00001157117,0.0000334725,0.000002446635,0.000569785],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004372569,"threshold_uncertainty_score":0.0146277,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4406085229","doi":"10.1038/s44259-024-00072-1","title":"The role of gene copy number variation in antimicrobial resistance in human fungal pathogens","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; Université Laval; PROTEO","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Copy-number variation; Biology; Gene dosage; Gene; Genetics; Drug resistance; Antifungal drug; Adaptation (eye); Gene duplication; Genome; Resistance (ecology); Antifungal; Antibiotic resistance; Computational biology; Microbiology; Candida albicans; Gene expression; Antibiotics","authors":[{"name":"David Jordan","is_ca":true},{"name":"Aleeza C. Gerstein","is_ca":true},{"name":"Christian R. Landry","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006553722525245853,"gpt":0.2502399434224686,"spread":0.2436862208972227,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007799051,0.0005274993,0.001173985,0.002686417,0.0001671587,0.0008770056,0.0007692523,0.0008517081,0.002534231],"category_scores_gemma":[0.001715193,0.0001997573,0.0005611125,0.002162315,0.0005191052,0.0009231283,0.0004371996,0.00094162,0.0007041761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005544624,"about_ca_system_score_gemma":0.001045187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001356974,"about_ca_topic_score_gemma":0.001744387,"domain_scores_codex":[0.9996965,0.00005786162,0.00005822641,0.00006366261,0.0001031074,0.00002068092],"domain_scores_gemma":[0.9990808,0.0006126528,0.0001070159,0.00001749845,0.0001501247,0.00003192651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000878441,0.00002513664,0.001160337,0.01725077,0.0001822136,0.0004162039,0.00006353343,0.0002940093,0.001082996,0.001872626,0.0121043,0.96546],"study_design_scores_gemma":[0.00002115205,0.000155252,0.008472644,0.01110757,0.0007170704,0.008244899,0.0001301286,0.000196938,0.001255541,0.003336593,0.9663131,0.00004915888],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001434383,0.9991523,0.00007919849,0.0001911149,0.00006517213,0.000001757159,0.00001794353,0.000003557886,0.0003455413],"genre_scores_gemma":[0.00129605,0.9980342,0.0001578584,0.000129585,0.0001197376,0.000003441285,0.00003526848,0.000001268141,0.0002225349],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002686417,"threshold_uncertainty_score":0.008477867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410338594","doi":"10.1038/s44259-025-00108-0","title":"Reviewing the complexities of bacterial biocide susceptibility and in vitro biocide adaptation methodologies","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antimicrobial agents and applications","field":"Chemistry","cited_by":16,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biocide; Microbiology; Adaptation (eye); Biology; Chemistry","authors":[{"name":"Peter O’Reilly","is_ca":true},{"name":"Genevieve Loiselle","is_ca":true},{"name":"Ryan Darragh","is_ca":true},{"name":"Carmine J. Slipski","is_ca":true},{"name":"Denice C. Bay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1029228379774787,"gpt":0.349769374841593,"spread":0.2468465368641143,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001342074,0.000900974,0.001149332,0.003073743,0.0003615208,0.001373589,0.0009510941,0.001063975,0.002917209],"category_scores_gemma":[0.002004394,0.0003900398,0.0006083559,0.002700114,0.0005821585,0.001906386,0.0006885926,0.001592425,0.00197517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007421648,"about_ca_system_score_gemma":0.001819378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001493274,"about_ca_topic_score_gemma":0.003121536,"domain_scores_codex":[0.9991449,0.0001870312,0.000111432,0.0001070802,0.0004024896,0.00004699074],"domain_scores_gemma":[0.9987135,0.000687169,0.0001642358,0.00004262347,0.0003599018,0.00003263175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000420258,0.00008180258,0.0002755195,0.05656244,0.0001023405,0.0003347264,0.000229898,0.0006260407,0.01718263,0.01030214,0.02190423,0.8923562],"study_design_scores_gemma":[0.000003581108,0.000123166,0.0007763354,0.005427834,0.0000995154,0.0009298525,0.0001315261,0.0001239069,0.005080261,0.002438065,0.9848387,0.00002716073],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004280867,0.9943221,0.001163834,0.0004490956,0.0003584539,0.00001813876,0.00004163841,0.0000162053,0.003202377],"genre_scores_gemma":[0.001539397,0.9954227,0.001277009,0.0003306454,0.000213566,0.00002012853,0.00005847291,0.000005073133,0.001132997],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003073743,"threshold_uncertainty_score":0.009759009,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409869435","doi":"10.1038/s44259-025-00100-8","title":"Antimicrobial resistance and vaccines in Enterobacteriaceae including extraintestinal pathogenic Escherichia coli and Klebsiella pneumoniae","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia Hospital; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Klebsiella pneumoniae; Microbiology; Enterobacteriaceae; Escherichia coli; Antimicrobial; Antibiotic resistance; Biology; Klebsiella; Virology; Antibiotics; Gene; Genetics","authors":[{"name":"Adriana Cabrera","is_ca":true},{"name":"Emily Mason","is_ca":true},{"name":"Liam Mullins","is_ca":true},{"name":"Manish Sadarangani","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01667053022001569,"gpt":0.2828627242223214,"spread":0.2661921940023057,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000519217,0.0006753114,0.001089535,0.001781945,0.0002287689,0.0009039604,0.0006190594,0.001218023,0.002830822],"category_scores_gemma":[0.0007398348,0.0002290092,0.0004505421,0.001668505,0.0003683167,0.001118583,0.0005971754,0.001741745,0.001767945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004850428,"about_ca_system_score_gemma":0.0009434776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007303032,"about_ca_topic_score_gemma":0.001302556,"domain_scores_codex":[0.9997905,0.00004139065,0.00002860423,0.00002612109,0.00008846651,0.00002493933],"domain_scores_gemma":[0.9996711,0.0001699392,0.00004996112,0.00001139752,0.0000684006,0.00002922366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00004896963,0.00005495202,0.0001256821,0.01771424,0.0000649956,0.0001293857,0.0000497462,0.0002920553,0.00226638,0.003165067,0.0290506,0.9470379],"study_design_scores_gemma":[0.000009753081,0.00009877495,0.0007491687,0.00437338,0.00007510176,0.0009860662,0.00004039622,0.00005871761,0.0005082422,0.001358301,0.9917302,0.00001185578],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008905824,0.9986577,0.00008503954,0.0002051028,0.0002338854,0.000003331062,0.00001213887,0.00000614036,0.0007076509],"genre_scores_gemma":[0.0003919863,0.9987419,0.0001170079,0.0001370912,0.0001281395,0.000004415262,0.00002180335,0.000001074529,0.0004566171],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002830822,"threshold_uncertainty_score":0.009470105,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412935730","doi":"10.1038/s44259-025-00139-7","title":"The impact of bacterial purine metabolism on antibiotic efficacy","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Antibiotics; Purine; Purine metabolism; Microbial metabolism; Microbiology; Chemistry; Medicine; Bacteria; Biology; Biochemistry; Genetics; Enzyme","authors":[{"name":"Claire E. Stevens","is_ca":false},{"name":"Ashley T. Deventer","is_ca":false},{"name":"Joanne K. Hobbs","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01227681338602836,"gpt":0.3111341161826187,"spread":0.2988573027965903,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005055683,0.0005811747,0.001157903,0.001667968,0.0002582319,0.001163914,0.0007316889,0.001001786,0.003656124],"category_scores_gemma":[0.001159475,0.0002403505,0.0004180658,0.001632063,0.0004608945,0.001069076,0.0006575728,0.001475962,0.001749658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006256966,"about_ca_system_score_gemma":0.001042044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008726249,"about_ca_topic_score_gemma":0.00130795,"domain_scores_codex":[0.999762,0.00004098141,0.00004261831,0.00004036164,0.00009158114,0.0000224171],"domain_scores_gemma":[0.9993896,0.0003510156,0.00009334418,0.00001622834,0.0001128278,0.00003689312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007899077,0.00003039699,0.0002080677,0.02437715,0.00009453695,0.0001829575,0.00005629179,0.0003468009,0.002879503,0.003613457,0.01665679,0.951475],"study_design_scores_gemma":[0.00001038798,0.000119071,0.001548175,0.006120902,0.0001427987,0.001935326,0.0000659983,0.0001052993,0.001423386,0.002430042,0.9860747,0.00002390318],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001159364,0.9988443,0.0000704518,0.0001669762,0.0001235889,0.00000162084,0.00001887528,0.000004681413,0.000653484],"genre_scores_gemma":[0.0007774736,0.9985927,0.0001008706,0.0001118516,0.0001001793,0.000002991864,0.00002175238,0.000001370697,0.0002908067],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003656124,"threshold_uncertainty_score":0.01223093,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410546894","doi":"10.1038/s44259-025-00116-0","title":"Small-molecule screen in C. elegans identifies benzenesulfonamides as inhibitors of microsporidia spores","year":2025,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; China Scholarship Council","keywords":"Microsporidia; Spore; Biology; Caenorhabditis elegans; Microbiology; Genetics; Gene","authors":[{"name":"Qingyuan Huang","is_ca":true},{"name":"Haiyi Jiang","is_ca":false},{"name":"Junhong Wei","is_ca":false},{"name":"Yabin Dou","is_ca":false},{"name":"Guoqing Pan","is_ca":false},{"name":"Jie Chen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008381479338060122,"gpt":0.2097717620916445,"spread":0.2013902827535844,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001552532,0.0005474934,0.0003794884,0.0004573118,0.0001996499,0.0002162713,0.0002998061,0.0003039348,0.002123392],"category_scores_gemma":[0.0001206707,0.000152367,0.0002604508,0.000286839,0.0001517858,0.0001606238,0.0001677975,0.0003466615,0.0004883754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002999161,"about_ca_system_score_gemma":0.0002965808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001511843,"about_ca_topic_score_gemma":0.005294542,"domain_scores_codex":[0.9999256,0.000009733787,0.00000548291,0.00001639632,0.00002872927,0.0000139916],"domain_scores_gemma":[0.9999473,0.000009844561,0.00001249733,0.000003889659,0.00001314078,0.00001330695],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003089118,0.000145417,0.00081365,0.0004279882,0.00004168969,0.0001983649,0.00003043354,0.000905826,0.9803516,0.0002259392,0.0007551146,0.01579502],"study_design_scores_gemma":[0.000429576,0.007817127,0.01961377,0.0001014185,0.0002102176,0.0008530132,0.00006205049,0.003014017,0.9436691,0.000150987,0.02402922,0.00004949597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9678504,0.01029809,0.004915606,0.0002779218,0.00005849731,0.0003561347,0.004405966,0.0005297546,0.01130769],"genre_scores_gemma":[0.9659331,0.01204614,0.006549919,0.000286271,0.00002499496,0.0002233541,0.005385956,0.00004008894,0.009510097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002123392,"threshold_uncertainty_score":0.007103443,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4403288107","doi":"10.1038/s44259-024-00048-1","title":"How do Gram-negative bacteria escape predation by Bdellovibrio bacteriovorus?","year":2024,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Bdellovibrio; Predation; Bacteria; Biology; Gram-negative bacteria; Microbiology; Ecology; Escherichia coli; Genetics","authors":[{"name":"S Das","is_ca":false},{"name":"David Negus","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01287475205329337,"gpt":0.2689148258522491,"spread":0.2560400737989557,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000578897,0.0008449797,0.001336497,0.001665302,0.000271495,0.001294377,0.001030711,0.001742987,0.002522561],"category_scores_gemma":[0.0007747942,0.0003862916,0.00036127,0.001563789,0.0006468728,0.001961747,0.0007775541,0.001816788,0.002959692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007908756,"about_ca_system_score_gemma":0.0008626189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001214904,"about_ca_topic_score_gemma":0.002104006,"domain_scores_codex":[0.9998474,0.0000252997,0.0000200985,0.00002984652,0.00005845956,0.00001887756],"domain_scores_gemma":[0.9997388,0.0001001259,0.0000436546,0.000008621289,0.00007599883,0.00003285965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007511547,0.00003402388,0.0001221687,0.01393199,0.00007026816,0.0001141123,0.00004964498,0.0003069913,0.002211081,0.004358629,0.03268443,0.9460415],"study_design_scores_gemma":[0.00001533424,0.00007790494,0.0006980684,0.002574233,0.00006355797,0.0006394563,0.0000493349,0.00008891909,0.0005417758,0.002081414,0.9931476,0.00002245904],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007031891,0.9987502,0.00007413286,0.0002684706,0.0001866712,0.000002119762,0.0000108237,0.000005258274,0.000631926],"genre_scores_gemma":[0.0003793568,0.9986495,0.00008595557,0.000205073,0.0001280645,0.000003670945,0.00001778903,0.000001268349,0.0005292993],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002522561,"threshold_uncertainty_score":0.008438826,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4414084963","doi":"10.1038/s44259-025-00151-x","title":"Communities of plasmids as strategies for antimicrobial resistance gene survival in wastewater treatment plant effluent","year":2025,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Trinity College","funders":"Environmental Protection Agency","keywords":"Plasmid; Gene; Mobile genetic elements; Escherichia coli; Horizontal gene transfer; Effluent","authors":[{"name":"Cian Smyth","is_ca":false},{"name":"Robert J. Leigh","is_ca":true},{"name":"Thị Thùy","is_ca":false},{"name":"Fiona Walsh","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02029334813122591,"gpt":0.2712521658577241,"spread":0.2509588177264982,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003359042,0.0001852616,0.0002379534,0.0005428153,0.0002364291,0.001001368,0.0002115214,0.0003689377,0.000621211],"category_scores_gemma":[0.0008801118,0.0001267674,0.0001467346,0.0004463313,0.0003976255,0.000757385,0.0006302515,0.0003469776,0.0002039844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002584424,"about_ca_system_score_gemma":0.0002904736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006098429,"about_ca_topic_score_gemma":0.0007553123,"domain_scores_codex":[0.9996923,0.00007320951,0.00002176018,0.00006889661,0.00008500937,0.00005880682],"domain_scores_gemma":[0.9994855,0.000153842,0.0001551258,0.0000334493,0.0001105359,0.00006149041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002353781,0.00008434429,0.03042958,0.0001688271,0.00001596442,0.0001777976,0.0004421618,0.000316587,0.9521818,0.0003865109,0.0000535524,0.01550747],"study_design_scores_gemma":[0.00002753696,0.001413229,0.3161632,0.000113474,0.00009456352,0.001614008,0.003545273,0.005329214,0.6631565,0.001685227,0.0068055,0.00005224789],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970207,0.0003262066,0.001841899,0.00007421149,0.000002938012,0.00001613395,0.0001090956,0.00002390408,0.0005849404],"genre_scores_gemma":[0.9962591,0.0002608958,0.002518494,0.00002610109,0.00000286148,0.00001238038,0.0001784147,0.000008249778,0.0007335598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001001368,"threshold_uncertainty_score":0.002078116,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408934917","doi":"10.1038/s44259-025-00091-6","title":"Exploiting social traits for clinical applications in bacteria and viruses","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"HORIZON EUROPE European Research Council; Directorate for Biological Sciences","keywords":"Bacteria; Biology; Computational biology; Computer science; Data science; Virology; Genetics","authors":[{"name":"Ashleigh S. Griffin","is_ca":false},{"name":"Asher Leeks","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05441508928303673,"gpt":0.400829772681577,"spread":0.3464146833985403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008489694,0.0007599599,0.001551443,0.001874573,0.0003503948,0.001364079,0.0008093443,0.001457605,0.005132619],"category_scores_gemma":[0.001124508,0.0002676785,0.0007628723,0.001219893,0.0006046414,0.001284434,0.0007762253,0.002075384,0.001874946],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000603431,"about_ca_system_score_gemma":0.0006778092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005753175,"about_ca_topic_score_gemma":0.00119195,"domain_scores_codex":[0.9997444,0.00006525455,0.00003453251,0.00004091688,0.00008573884,0.00002917793],"domain_scores_gemma":[0.9994299,0.0003907699,0.00005898272,0.00001659687,0.00007336032,0.00003031969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007127247,0.0000843755,0.0001744251,0.02650319,0.0001404103,0.0002833943,0.00007885307,0.0003835023,0.00273353,0.01036166,0.02073985,0.9384454],"study_design_scores_gemma":[0.0000210879,0.0001675666,0.0006749539,0.004817768,0.0001276955,0.001438481,0.00006084151,0.0001276964,0.0008969303,0.004055308,0.9875847,0.00002710486],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008156212,0.9985123,0.000153344,0.0002262358,0.0001884706,0.000005770901,0.00001202452,0.000005911666,0.0008144044],"genre_scores_gemma":[0.0009229941,0.9978853,0.0002334381,0.0002131985,0.000158415,0.00001055139,0.00002499831,0.000001840662,0.0005491609],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005132619,"threshold_uncertainty_score":0.01717031,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408063162","doi":"10.1038/s44259-025-00083-6","title":"Aspergillus fumigatus mitogenomes and their influence on azole-resistant and -susceptible populations","year":2025,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Azrieli Foundation; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Life Sciences Research Foundation; International Development Research Centre; Fundação de Amparo à Pesquisa do Estado de São Paulo; Canadian Institutes of Health Research; Universidade de São Paulo; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Wellcome Trust","keywords":"Biology; Aspergillus fumigatus; Azole; Gene; Mitochondrial DNA; Genetics; Mitochondrion; Phenotype; Genome; Intergenic region; Microbiology; Antifungal","authors":[{"name":"Endrews Delbaje","is_ca":false},{"name":"Laís Pontes","is_ca":false},{"name":"Johanna Rhodes","is_ca":false},{"name":"Jacob L. Steenwyk","is_ca":false},{"name":"Ling Lü","is_ca":false},{"name":"Thaila Fernanda dos Reis","is_ca":false},{"name":"Antonis Rokas","is_ca":false},{"name":"Gustavo H. Goldman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01376186603761394,"gpt":0.2711327064704878,"spread":0.2573708404328739,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001710263,0.0001694856,0.0001793914,0.0007196678,0.0001824132,0.0002511157,0.0001425967,0.0002064183,0.001507296],"category_scores_gemma":[0.0005849102,0.00006155021,0.0001399894,0.0002286121,0.0001577533,0.0001620716,0.0002602907,0.0001845108,0.000150206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001279959,"about_ca_system_score_gemma":0.00007658931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008260821,"about_ca_topic_score_gemma":0.001099208,"domain_scores_codex":[0.9997556,0.00005657168,0.00001864419,0.00007631749,0.00004625104,0.0000467006],"domain_scores_gemma":[0.9996065,0.00008261729,0.0001286466,0.00003277059,0.00004362553,0.0001058268],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008323214,0.00009809298,0.09088916,0.00002403397,0.00005296581,0.0002094207,0.0003009806,0.00008669431,0.9013125,0.0001516798,0.00004655221,0.005995603],"study_design_scores_gemma":[0.00001306454,0.0004945752,0.9679888,0.000006349203,0.00004380327,0.0007565932,0.0004067624,0.0005544639,0.02881052,0.0001151981,0.0007994936,0.00001043296],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999499,0.00008176302,0.00009445473,0.000007839213,0.000001495293,0.000002764628,0.0001065954,0.000003286178,0.0002027465],"genre_scores_gemma":[0.9995408,0.00003568179,0.00009121636,0.000006667777,0.000002296116,0.000002974334,0.0001619274,0.000002028324,0.0001566199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001507296,"threshold_uncertainty_score":0.005042374,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404858082","doi":"10.1038/s44259-024-00057-0","title":"The putative error prone polymerase REV1 mediates DNA damage and drug resistance in Candida albicans","year":2024,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Université du Québec à Montréal; Public Health Agency of Canada; University of Toronto; PROTEO; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research; Public Health Agency; Government of Canada; Public Health Agency of Canada; Genome Canada","keywords":"Candida albicans; DNA damage; Biology; Mutagenesis; DNA polymerase; DNA repair; Polymerase; DNA; Gene; Antifungal drug; Mutation; Genetics; Microbiology","authors":[{"name":"Michelle Agyare-Tabbi","is_ca":true},{"name":"Deeva Uthayakumar","is_ca":true},{"name":"Desiree Francis","is_ca":true},{"name":"Laetitia Maroc","is_ca":true},{"name":"Chris K. Grant","is_ca":true},{"name":"Peter McQueen","is_ca":true},{"name":"Garret Westmacott","is_ca":true},{"name":"Hajer Shaker","is_ca":true},{"name":"Iwona Skulska","is_ca":true},{"name":"Isabelle Gagnon‐Arsenault","is_ca":true},{"name":"J. Boisvert","is_ca":true},{"name":"Christian R. Landry","is_ca":true},{"name":"Rebecca S. Shapiro","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009074180336745919,"gpt":0.2721284447086081,"spread":0.2630542643718622,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001421923,0.00037374,0.000253821,0.0003601816,0.0001751113,0.0004939905,0.0002864985,0.0003623097,0.0009098709],"category_scores_gemma":[0.0002585859,0.0001491732,0.0002540452,0.0002042888,0.0001713151,0.0001849369,0.0003017399,0.0004394542,0.0003879951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003672192,"about_ca_system_score_gemma":0.0002239873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00106056,"about_ca_topic_score_gemma":0.001013753,"domain_scores_codex":[0.9997912,0.00002359078,0.00002307197,0.00005021879,0.00006616009,0.00004568166],"domain_scores_gemma":[0.999831,0.00003675647,0.00005295734,0.00002393487,0.00003024771,0.00002513338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006524836,0.00001601469,0.0009392039,0.00003400935,0.000003695151,0.00007393659,0.000009807011,0.0001121427,0.9973035,0.00005148042,0.00003016106,0.001360843],"study_design_scores_gemma":[0.000008330963,0.0001504159,0.02217485,0.00001271006,0.00001595248,0.0006818929,0.00007068418,0.001939158,0.9735971,0.00008682413,0.001249642,0.00001241938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947675,0.002210971,0.001592647,0.00008742323,0.00001924324,0.00001938397,0.0004147614,0.00008479979,0.0008033036],"genre_scores_gemma":[0.9961643,0.0006937461,0.00141561,0.00004277525,0.000004757906,0.00001695139,0.0004374046,0.00001983433,0.001204597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00106056,"threshold_uncertainty_score":0.00304383,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412935699","doi":"10.1038/s44259-025-00143-x","title":"The Parkinson’s drug benztropine possesses histamine receptor 1-dependent host-directed antimicrobial activity against Mycobacterium tuberculosis","year":2025,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Phenothiazines and Benzothiazines Synthesis and Activities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; University of British Columbia","funders":"Canadian Institutes of Health Research; Science for Life Laboratory; Vetenskapsrådet; University of British Columbia; Linköpings Universitet","keywords":"Antimicrobial; Mycobacterium tuberculosis; Benztropine; Histamine; Drug; Tuberculosis; Medicine; Microbiology; Pharmacology; Biology; Internal medicine; Dopamine; Pathology","authors":[{"name":"Henok Sahile","is_ca":true},{"name":"Matthew Christofferson","is_ca":true},{"name":"Morgan A. Alford","is_ca":true},{"name":"Céline Rens","is_ca":true},{"name":"Hasti Haghdadi","is_ca":true},{"name":"Joseph D. Chao","is_ca":true},{"name":"Robert E. W. Hancock","is_ca":true},{"name":"Jeffrey Chen","is_ca":true},{"name":"Yossef Av‐Gay","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00431263628142269,"gpt":0.2145618048537763,"spread":0.2102491685723536,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008649981,0.000205923,0.000178936,0.0001516512,0.0001084913,0.0001661093,0.000111443,0.0001817985,0.0007971146],"category_scores_gemma":[0.00008514059,0.00007395808,0.000157025,0.0001096739,0.000128063,0.00009714402,0.0001123008,0.0002649394,0.0002291709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000197442,"about_ca_system_score_gemma":0.0001845666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007236318,"about_ca_topic_score_gemma":0.001799109,"domain_scores_codex":[0.9999397,0.00001127896,0.000003814336,0.000008818928,0.00002360162,0.00001276203],"domain_scores_gemma":[0.9999622,0.000005509802,0.00001229547,0.0000043861,0.000006845965,0.000008850579],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005308749,0.00001089227,0.0001532465,0.00005004589,0.000004708342,0.00004955297,0.000005562532,0.00005467347,0.9956737,0.00006414313,0.00004512146,0.003835191],"study_design_scores_gemma":[0.000037932,0.0007163081,0.006212509,0.000009304585,0.00003083664,0.0005740343,0.00001373086,0.0005992209,0.9842136,0.00005464531,0.007531631,0.000006276326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733228,0.01337739,0.006397973,0.0004112156,0.00004772564,0.00008444285,0.0005341209,0.0001869356,0.005637553],"genre_scores_gemma":[0.9891664,0.004611787,0.002798291,0.00008201102,0.00001415893,0.00001803919,0.0004202936,0.00001011922,0.002879009],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007971146,"threshold_uncertainty_score":0.002666652,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404858231","doi":"10.1038/s44259-024-00058-z","title":"Conference report of the 2024 Antimicrobial Resistance Meeting","year":2024,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Antibiotic Use and Resistance","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Wellcome Trust","keywords":"Big data; Data science; Genomics; Computer science; Genome; Biology; Data mining; Genetics","authors":[{"name":"Charlotte E. Chong","is_ca":false},{"name":"Thi Mui Pham","is_ca":false},{"name":"Megan E. Carey","is_ca":false},{"name":"Bryan A. Wee","is_ca":false},{"name":"Mona L. Taouk","is_ca":false},{"name":"Javier F. Favieres","is_ca":false},{"name":"Catrin E. Moore","is_ca":false},{"name":"Zoe A. Dyson","is_ca":false},{"name":"Cherry Lim","is_ca":false},{"name":"Connor Brown","is_ca":false},{"name":"Deborah A. Williamson","is_ca":false},{"name":"Lulla Opatowski","is_ca":false},{"name":"Kevin Outterson","is_ca":false},{"name":"Karyn M Mukiri","is_ca":true},{"name":"Norelle L. Sherry","is_ca":false},{"name":"Sabiha Y. Essack","is_ca":false},{"name":"Sylvain Brisse","is_ca":false},{"name":"Yonatan H. Grad","is_ca":false},{"name":"Kate S. Baker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01014662364198401,"gpt":0.2330161616132652,"spread":0.2228695379712812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004201458,0.001469056,0.0007068911,0.001348914,0.001824704,0.003931148,0.001461011,0.004552475,0.09180575],"category_scores_gemma":[0.003511064,0.0002790166,0.001086904,0.0007268224,0.0003978109,0.001266947,0.002144043,0.003313475,0.03785285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001722741,"about_ca_system_score_gemma":0.005080845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003706851,"about_ca_topic_score_gemma":0.008953635,"domain_scores_codex":[0.998403,0.0002694937,0.00007306408,0.0001915507,0.0007357139,0.0003271717],"domain_scores_gemma":[0.9964368,0.0002835835,0.0001506583,0.00007886673,0.001611976,0.001438052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002491936,0.00009769576,0.0004941773,0.0003128934,0.00002153437,0.0002846863,0.00006941773,0.0001362462,0.001351219,0.000449314,0.9745301,0.02200345],"study_design_scores_gemma":[0.00002907216,0.0001131568,0.001641889,0.00009731246,0.00001321973,0.00006768884,0.000191926,0.0001436759,0.0005435434,0.0003314392,0.9968129,0.00001423124],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"other","genre_scores_codex":[0.01109501,0.02342514,0.004284719,0.1739059,0.6113737,0.001467989,0.0129977,0.000540175,0.1609097],"genre_scores_gemma":[0.03230716,0.01313109,0.004436372,0.02965918,0.1234972,0.001414118,0.01458411,0.0004630372,0.7805078],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.09180575,"threshold_uncertainty_score":0.3071209,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410896501","doi":"10.1038/s44259-025-00115-1","title":"Building microbial communities to improve antimicrobial strategies","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Antimicrobial; Perspective (graphical); Biology; Selection (genetic algorithm); Pipeline (software); Computational biology; Antimicrobial drug; Drug discovery; Biotechnology; Ecology; Microbiology; Bioinformatics; Computer science; Artificial intelligence","authors":[{"name":"Laurence Couture","is_ca":true},{"name":"Fabrice Jean-Pierre","is_ca":true},{"name":"Jean‐Philippe Côté","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01575817579390253,"gpt":0.3199682375938385,"spread":0.3042100617999359,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001361813,0.001272098,0.001669423,0.002157513,0.0003820507,0.002225113,0.001499865,0.002491114,0.003893295],"category_scores_gemma":[0.001680826,0.0004106087,0.0007782785,0.001010803,0.001126511,0.003001905,0.001850481,0.004050877,0.002927929],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00123831,"about_ca_system_score_gemma":0.001415891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007489167,"about_ca_topic_score_gemma":0.001138453,"domain_scores_codex":[0.9994158,0.0001439355,0.00005825254,0.00008646343,0.000219073,0.0000765135],"domain_scores_gemma":[0.9993023,0.0003306838,0.00009142639,0.00004695065,0.0001566361,0.00007207209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005413949,0.0001102135,0.0002245959,0.01768877,0.0001466472,0.0002615853,0.0001370737,0.001057831,0.009749735,0.03730613,0.02798313,0.9052802],"study_design_scores_gemma":[0.00001563961,0.000100453,0.0003606908,0.003375022,0.00006602192,0.0004950896,0.00007718088,0.0002680135,0.002240758,0.009037458,0.9839406,0.00002311757],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002794313,0.9935231,0.001665088,0.001267984,0.0006859683,0.00001608051,0.00002781862,0.00004668665,0.00248784],"genre_scores_gemma":[0.002994745,0.9911008,0.003008167,0.0009405906,0.0004505841,0.00003155443,0.00005691266,0.00001208244,0.001404618],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003893295,"threshold_uncertainty_score":0.01302433,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4382986284","doi":"10.1038/s44259-023-00005-4","title":"Loss of allosteric regulation in α-isopropylmalate synthase identified as an antimicrobial resistance mechanism","year":2023,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs; Government of Canada; McGill University","keywords":"Norvaline; Allosteric regulation; Biology; Mutant; Biochemistry; Efflux; Antimicrobial; Amino acid; Microbiology; Valine; Enzyme; Gene","authors":[{"name":"Jaryd Sullivan","is_ca":true},{"name":"Christophe Courtine","is_ca":true},{"name":"Lorne Taylor","is_ca":true},{"name":"Ori Solomon","is_ca":true},{"name":"Marcel A. Behr","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01831737629514621,"gpt":0.290464879030956,"spread":0.2721475027358097,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001068476,0.0003006379,0.0002662257,0.0001378162,0.00008650204,0.0002399331,0.0002717747,0.0002945651,0.001105818],"category_scores_gemma":[0.0002384298,0.0001007287,0.0003274076,0.0001043135,0.0002140218,0.0001322484,0.0002679634,0.0004878136,0.0004670243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001631253,"about_ca_system_score_gemma":0.0001256764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003352513,"about_ca_topic_score_gemma":0.000241711,"domain_scores_codex":[0.9998611,0.0000278286,0.00001836434,0.00002519495,0.00004837373,0.00001913816],"domain_scores_gemma":[0.9997944,0.00003686346,0.00007700948,0.00003780501,0.00002377262,0.00003016615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003158781,0.00001589775,0.0002490277,0.00001267573,0.000003501583,0.00008107469,0.000006375376,0.00002866544,0.9989083,0.00004057914,0.0000119925,0.0006103487],"study_design_scores_gemma":[0.00001124284,0.0002481722,0.008922509,0.000007886264,0.00001784333,0.001272088,0.00004355099,0.001824362,0.9861006,0.00008571083,0.001456009,0.000009930297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952629,0.0003016281,0.003419601,0.00009282567,0.00002979118,0.00002236433,0.0001667091,0.0001086359,0.0005955456],"genre_scores_gemma":[0.9979032,0.00007220892,0.001145978,0.0000329977,0.000004324655,0.00001170531,0.0001523325,0.00001684119,0.0006604444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001105818,"threshold_uncertainty_score":0.003699303,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4400739327","doi":"10.1038/s44259-024-00037-4","title":"The effect of antibiotic selection on collateral effects and evolvability of uropathogenic Escherichia coli","year":2024,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Royal Society; Directorate for Biological Sciences; Urology Foundation; Trent University; Nottingham Trent University","keywords":"Nitrofurantoin; Trimethoprim; Escherichia coli; Antibiotics; Fosfomycin; Biology; Microbiology; Antibiotic resistance; Collateral damage; Population; Antimicrobial; Mutation; Genetics; Medicine; Gene","authors":[{"name":"Beth James","is_ca":false},{"name":"Hishikha Reesaul","is_ca":false},{"name":"Sidra Kashif","is_ca":false},{"name":"Mahboobeh Behruznia","is_ca":false},{"name":"Conor J. Meehan","is_ca":false},{"name":"Maria Rosa Domingo-Sananes","is_ca":false},{"name":"Alasdair T. M. Hubbard","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003426793127296438,"gpt":0.2364466034972224,"spread":0.2330198103699259,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009767523,0.0003807198,0.0003540017,0.0004004362,0.0002136686,0.0006304326,0.0003645539,0.0003092498,0.001208339],"category_scores_gemma":[0.003283986,0.0001215236,0.0002608345,0.0002695856,0.0003981392,0.0003099884,0.0007806404,0.0005076571,0.0001458357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003247391,"about_ca_system_score_gemma":0.0002691351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007438837,"about_ca_topic_score_gemma":0.0008286005,"domain_scores_codex":[0.9991071,0.000376567,0.00006003094,0.0001468504,0.0002009181,0.0001085265],"domain_scores_gemma":[0.9964389,0.00183681,0.0006819749,0.0003357408,0.0003303976,0.000376364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0013007,0.0004849389,0.1734473,0.00007248762,0.0001316666,0.000568028,0.0002825123,0.002908052,0.8046561,0.0003837371,0.0001156428,0.01564875],"study_design_scores_gemma":[0.00004456689,0.005723157,0.7579242,0.00003225419,0.0001249968,0.001837053,0.0004268117,0.01951363,0.2126776,0.000475157,0.00115728,0.00006324038],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989365,0.0000603992,0.0006014414,0.00001582815,0.000002421707,0.00001069719,0.000049975,0.000008751921,0.0003141892],"genre_scores_gemma":[0.9993905,0.000026058,0.0003509734,0.000007918447,0.000001579615,0.000006211124,0.00006606353,0.000005965375,0.0001449118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001208339,"threshold_uncertainty_score":0.005165637,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4417159034","doi":"10.1038/s44259-026-00232-5","title":"Invasion dynamics of antimicrobial-resistant E. coli in river biofilms: impacts on the resistome, microbiomes, and horizontal gene transfer","year":2025,"lang":"en","type":"article","venue":"npj Antimicrobials and Resistance","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"European Commission; Biodiversa+; “la Caixa” Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Horizontal gene transfer; Resistome; Plasmid; Biofilm; Context (archaeology); Microbiome; Metagenomics; Environmental DNA; Bacteria","authors":[{"name":"Giulia Gionchetta","is_ca":false},{"name":"Jangwoo Lee","is_ca":true},{"name":"O. Rosenlund Hansen","is_ca":false},{"name":"Karin Beck","is_ca":false},{"name":"Helmut Bürgmann","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01003450689479128,"gpt":0.2320377048077498,"spread":0.2220031979129585,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002559042,0.0003210706,0.0003724891,0.000194946,0.0002525823,0.0008136933,0.0001856273,0.0003901945,0.0009568193],"category_scores_gemma":[0.0002463909,0.000217792,0.0003218778,0.0002631836,0.0001962088,0.0003436953,0.0005319465,0.0004780231,0.0002157806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001922473,"about_ca_system_score_gemma":0.0002750422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001519884,"about_ca_topic_score_gemma":0.001561762,"domain_scores_codex":[0.9997304,0.0000306487,0.00002062918,0.00009377876,0.00006768404,0.00005689407],"domain_scores_gemma":[0.9998281,0.00003240732,0.00004925544,0.00001116205,0.00004420238,0.00003486933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001282475,0.00006260843,0.01182352,0.00007442526,0.0000142008,0.00004295974,0.0001757418,0.0001250125,0.985297,0.00002947122,0.00004908497,0.002177741],"study_design_scores_gemma":[0.00002338729,0.001354278,0.5225765,0.00006710077,0.0000945055,0.0003152335,0.001261509,0.003808312,0.4675697,0.0001851217,0.002681748,0.00006255422],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984877,0.0001714884,0.0004429234,0.00002623382,0.00000355003,0.0000147528,0.0004769752,0.00001140405,0.0003649436],"genre_scores_gemma":[0.9954921,0.0003249345,0.001837617,0.00006931424,0.000005079383,0.0000751004,0.001104059,0.00001440667,0.001077437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001519884,"threshold_uncertainty_score":0.003200948,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}