{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":20,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":20,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"bf7d33a1cee9","filters":{"venue":"npj Viruses"}},"results":[{"id":"W4391997451","doi":"10.1038/s44298-024-00018-4","title":"The Wnt/β-catenin pathway is important for replication of SARS-CoV-2 and other pathogenic RNA viruses","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Canadian Institutes of Health Research; Canada Excellence Research Chairs, Government of Canada","keywords":"Wnt signaling pathway; Viral replication; Biology; Interferon; Virology; Biogenesis; Signal transduction; RNA; Virus; Cell biology; Gene; Genetics","authors":[{"name":"Zaikun Xu","is_ca":true},{"name":"Mohamed Elaish","is_ca":true},{"name":"Cheung Pang Wong","is_ca":true},{"name":"Bardes B. Hassan","is_ca":false},{"name":"Joaquín López-Orozco","is_ca":true},{"name":"Alberto Felix-Lopez","is_ca":true},{"name":"Natacha S. Ogando","is_ca":true},{"name":"Les P. Nagata","is_ca":true},{"name":"Lara K. Mahal","is_ca":true},{"name":"Anil Kumar","is_ca":true},{"name":"Joyce A. Wilson","is_ca":true},{"name":"Ryan S. Noyce","is_ca":true},{"name":"Irv Mayers","is_ca":true},{"name":"Christopher Power","is_ca":true},{"name":"David H. Evans","is_ca":true},{"name":"Tom C. Hobman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1142921845813454,"gpt":0.4014952421026872,"spread":0.2872030575213418,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008078832,0.0001858308,0.0002764939,0.0001319313,0.0001318149,0.00008568294,0.0001838723,0.000120862,0.000008530012],"category_scores_gemma":[0.0004189131,0.000119058,0.0001727546,0.0002960019,0.0002065108,0.00009014118,0.00006723889,0.000170408,0.00004334201],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005034386,"about_ca_system_score_gemma":0.0002940939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000285159,"about_ca_topic_score_gemma":0.0001174264,"domain_scores_codex":[0.9982974,0.00004268302,0.000469297,0.0005137793,0.0003557927,0.0003210363],"domain_scores_gemma":[0.9986732,0.0004366689,0.0001052097,0.0006145186,0.0001420362,0.00002837351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003388085,0.00006163681,0.008550281,0.0002233777,0.0001323044,0.00001269385,0.0004910728,1.040975e-8,0.9665989,0.002058941,0.003174112,0.01835788],"study_design_scores_gemma":[0.0003229819,0.0001764815,0.000369565,0.00007972431,0.00005230452,0.00001652535,0.00006949797,0.0001449741,0.6095403,0.001189657,0.3879562,0.00008177006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858072,0.01148357,0.0001374006,0.0005010211,0.0001422893,0.0008141714,0.0001582178,0.0001159037,0.0008402091],"genre_scores_gemma":[0.9486406,0.0001323731,0.0001779471,0.05034228,0.0002541864,0.0002892258,0.000001997786,0.00008102989,0.00008032266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3847821,"threshold_uncertainty_score":0.4855046,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409655302","doi":"10.1038/s44298-025-00119-8","title":"A single amino acid mutation alters multiple neutralization epitopes in the respiratory syncytial virus fusion glycoprotein","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Respiratory viral infections research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Faculty of Medicine and Dentistry, University of Alberta; Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Stollery Children’s Hospital Foundation; Children's Hospital Foundation; University of Alberta; Women and Children's Health Research Institute; Children's Health Research Institute","keywords":"Neutralization; Epitope; Virology; Glycoprotein; Virus; Mutation; Respiratory system; Biology; Antibody; Immunology; Molecular biology; Genetics; Gene","authors":[{"name":"Ahmed K. Oraby","is_ca":true},{"name":"Aleksandra Stojic","is_ca":true},{"name":"Farah Elawar","is_ca":true},{"name":"Leanne M. Bilawchuk","is_ca":true},{"name":"Ryley D. McClelland","is_ca":true},{"name":"Kaci Erwin","is_ca":false},{"name":"Madison Granoski","is_ca":true},{"name":"Cameron Griffiths","is_ca":false},{"name":"Justin D. Frederick","is_ca":true},{"name":"Elena Arutyunova","is_ca":true},{"name":"M. Joanne Lemieux","is_ca":true},{"name":"F. G. West","is_ca":true},{"name":"Octavio Ramilo","is_ca":false},{"name":"Asunción Mejías","is_ca":false},{"name":"Jason S. McLellan","is_ca":false},{"name":"David Marchant","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07061234633891558,"gpt":0.3699288033498392,"spread":0.2993164570109236,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000465712,0.0001872293,0.0002430727,0.0005964109,0.0002250841,0.0001051772,0.0001933616,0.0001573065,0.00008585426],"category_scores_gemma":[0.001010024,0.000143101,0.00008792483,0.001136317,0.0001524104,0.0003028827,0.00006380123,0.0003525143,0.00009675529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002705216,"about_ca_system_score_gemma":0.0001947409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009229552,"about_ca_topic_score_gemma":0.001587588,"domain_scores_codex":[0.9979661,0.0004570786,0.0004576849,0.0003584571,0.0004427227,0.0003179337],"domain_scores_gemma":[0.9990286,0.0002126115,0.00008973214,0.0004587357,0.0001502399,0.00006007063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005364261,0.0004679861,0.03566667,0.00010894,0.00002604463,0.00007913104,0.0003571514,0.0001631413,0.9347944,0.0003140043,0.001878273,0.02560784],"study_design_scores_gemma":[0.002450117,0.0008088313,0.100574,0.000250992,0.00004729661,0.00001245116,0.0004081721,0.0004733231,0.8458393,0.0001580645,0.04879066,0.0001867755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940805,0.000583994,0.001323851,0.0003250516,0.0002312762,0.001285556,0.000008739726,0.0001069277,0.002054089],"genre_scores_gemma":[0.9948697,0.00003057983,0.0001404337,0.00436198,0.0001686015,0.000255278,0.00001445603,0.0000230472,0.0001359092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08895508,"threshold_uncertainty_score":0.583549,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404666904","doi":"10.1038/s44298-024-00069-7","title":"Conservative taxonomy and quality assessment of giant virus genomes with GVClass","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Office of Science; Joint Genome Institute; U.S. Department of Energy","keywords":"Genome; Giant Virus; Biology; Phylum; Evolutionary biology; Taxonomic rank; Phylogenetics; Virus classification; Computational biology; Genomics; Taxonomy (biology); DNA sequencing; Genetics; Gene; Ecology; Taxon","authors":[{"name":"Thomas M. Pitot","is_ca":true},{"name":"Tomáš Brůna","is_ca":false},{"name":"Frederik Schulz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07380358281212494,"gpt":0.3259858835694066,"spread":0.2521823007572817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000102117,0.00009597146,0.0001339472,0.00002189493,0.00005639461,0.00005270679,0.00006533047,0.00002782254,0.001754672],"category_scores_gemma":[0.000004789817,0.00007126118,0.0000297559,0.0001024114,0.0002412056,0.0002377595,0.00008191463,0.00009352352,0.00005339983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007425999,"about_ca_system_score_gemma":0.00002499015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002649281,"about_ca_topic_score_gemma":0.002052834,"domain_scores_codex":[0.9993946,0.00004063439,0.0001606773,0.0002073426,0.00008417564,0.0001125457],"domain_scores_gemma":[0.9996828,0.00009126776,0.00005391327,0.0001197048,0.000007561075,0.00004479379],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001938702,0.00006605879,0.02141469,0.0000377906,0.00005946666,0.000008489755,0.0002810106,0.00001585487,0.9684378,0.0007622259,0.001033104,0.00786411],"study_design_scores_gemma":[0.0001681277,0.0001430394,0.6835527,0.00006312959,0.00003558851,0.00001324584,0.0002910749,0.0001221861,0.05563186,0.00004512218,0.2597562,0.0001777632],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875472,0.0001788856,0.0009161429,0.0001639865,0.00009335019,0.0001890406,0.0001050491,0.00003415108,0.01077225],"genre_scores_gemma":[0.9949968,0.00008106296,0.003931405,0.0003144627,0.00001551859,0.00003125526,0.000002584135,0.000009249406,0.0006176815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.912806,"threshold_uncertainty_score":0.9991578,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4401257120","doi":"10.1038/s44298-024-00040-6","title":"Senecavirus cetus a novel picornavirus isolated from cetaceans represents a major host switching to the marine environment","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Fisheries and Oceans Canada; University of Manitoba; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Picornavirus; Biology; Genome; Phylogenetic tree; Phylogenetics; Host (biology); Evolutionary biology; Zoology; Genetics; Gene","authors":[{"name":"Oksana Vernygora","is_ca":true},{"name":"Daniel Sullivan","is_ca":true},{"name":"Ole Nielsen","is_ca":true},{"name":"Kathleen Burek Huntington","is_ca":false},{"name":"Natalie Rouse","is_ca":false},{"name":"Vsevolod L. Popov","is_ca":false},{"name":"Oliver Lung","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04507666946702672,"gpt":0.2602211997321354,"spread":0.2151445302651087,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002679434,0.0002513822,0.0002472982,0.0000228749,0.0002863708,0.0001987784,0.0004827504,0.00009460085,0.002343039],"category_scores_gemma":[0.00008672685,0.0000891268,0.0001713243,0.0002843101,0.00004162476,0.0001441351,0.0006436926,0.0002105708,0.001974166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004990149,"about_ca_system_score_gemma":0.000005559709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005424014,"about_ca_topic_score_gemma":0.001569835,"domain_scores_codex":[0.9982349,0.0001038315,0.0003238749,0.0006531308,0.0002370963,0.0004471337],"domain_scores_gemma":[0.9992261,0.0003531366,0.00005950925,0.0001769256,0.00001146443,0.000172896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005666604,0.0003643107,0.133394,0.00002114351,0.0004384355,0.0001389217,0.0004724984,0.0001184737,0.7630496,0.001274129,0.02077175,0.07939005],"study_design_scores_gemma":[0.0001547293,0.0002042539,0.5418704,0.0000399436,0.0001170219,0.000003048176,0.0002095415,0.002241345,0.0005376227,0.0006350005,0.4536559,0.000331149],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989843,0.0006276204,0.0003057159,0.006235644,0.0003370185,0.0004035237,0.0002514362,0.0002184467,0.00177764],"genre_scores_gemma":[0.9931688,0.0001641447,0.0001305673,0.00476852,0.0006493766,0.00005787545,0.00006934031,0.0000046947,0.0009867004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.762512,"threshold_uncertainty_score":0.9988029,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407880099","doi":"10.1038/s44298-025-00092-2","title":"Pathogenesis and transmission of SARS-CoV-2 D614G, Alpha, Gamma, Delta, and Omicron variants in golden hamsters","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Sunnybrook Health Science Centre; Sinai Health System; Ontario Institute for Cancer Research; Hospital for Sick Children; University of Guelph; St. Michael's Hospital; Dalhousie University; University of Toronto; Sunnybrook Hospital","funders":"","keywords":"Biology; Virology; Virus; Pathogenesis; Viral replication; Hamster; Immunology; Molecular biology","authors":[{"name":"Andra Banete","is_ca":true},{"name":"Bryan D. Griffin","is_ca":true},{"name":"Juan Carlos Corredor","is_ca":true},{"name":"Emily Chien","is_ca":true},{"name":"Lily Yip","is_ca":true},{"name":"T. Gunawardena","is_ca":true},{"name":"Kuganya Nirmalarajah","is_ca":true},{"name":"Jady Liang","is_ca":true},{"name":"Yaejin Lee","is_ca":true},{"name":"Alexander Leacy","is_ca":true},{"name":"Sara Pagliarani","is_ca":true},{"name":"Richard de Borja","is_ca":true},{"name":"Winfield Yim","is_ca":true},{"name":"Hunsang Lee","is_ca":true},{"name":"Yu Onodera","is_ca":true},{"name":"Patryk Aftanas","is_ca":false},{"name":"Patrick Budylowski","is_ca":true},{"name":"Sang Kyun Ahn","is_ca":true},{"name":"Yanlong Pei","is_ca":true},{"name":"Hong Ouyang","is_ca":true},{"name":"Xinliu Angel Li","is_ca":true},{"name":"Mario Ostrowski","is_ca":true},{"name":"Robert Kozak","is_ca":true},{"name":"Sarah K. Wootton","is_ca":true},{"name":"Natasha Christie-Holmes","is_ca":true},{"name":"Scott D. Gray‐Owen","is_ca":true},{"name":"Mikko Taipale","is_ca":true},{"name":"Jared T. Simpson","is_ca":true},{"name":"Finlay Maguire","is_ca":true},{"name":"Allison McGeer","is_ca":true},{"name":"Haibo Zhang","is_ca":true},{"name":"Leonardo Susta","is_ca":true},{"name":"Theo J. Moraes","is_ca":true},{"name":"Samira Mubareka","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04982392631747792,"gpt":0.3554226289297632,"spread":0.3055987026122853,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003110407,0.0001733865,0.0003972288,0.0003606508,0.00004712222,0.00002561244,0.0001049596,0.0001536853,0.000006733589],"category_scores_gemma":[0.00009889777,0.0001503765,0.00005538316,0.0003273682,0.0001766043,0.0001016024,0.00007096986,0.0001545747,0.000005231576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005025432,"about_ca_system_score_gemma":0.0001887614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001147487,"about_ca_topic_score_gemma":0.0002366023,"domain_scores_codex":[0.9987261,0.00008080975,0.0003302613,0.000361756,0.0002204716,0.0002806482],"domain_scores_gemma":[0.9994554,0.0001560361,0.00004730991,0.0002481046,0.00006015478,0.00003299779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005836897,0.0001104744,0.1752963,0.0003442176,0.00004034216,0.00005545709,0.0003786813,7.291018e-8,0.7747549,0.00003857007,0.0003183901,0.04807888],"study_design_scores_gemma":[0.002801019,0.0001694731,0.1284021,0.0004682558,0.00007408756,0.00001617282,0.0001362729,0.0001649674,0.8323442,0.000153639,0.03513725,0.0001325572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940627,0.004008983,0.0003195536,0.0002187376,0.00004982248,0.000364793,0.00001846392,0.00002564397,0.0009312528],"genre_scores_gemma":[0.9837441,0.0001887223,0.0004261637,0.01552916,0.00002534085,0.00002196984,0.000001527466,0.00002204156,0.00004099674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0575892,"threshold_uncertainty_score":0.6132176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4401252103","doi":"10.1038/s44298-024-00047-z","title":"Inferring enterovirus D68 transmission dynamics from the genomic data of two 2022 North American outbreaks","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Sunnybrook Hospital; Simon Fraser University; Public Health Agency of Canada; Université Laval; University of Toronto; Ontario College of Art and Design; University of British Columbia; Public Health Ontario; York University","funders":"Natural Sciences and Engineering Research Council of Canada; Public Health Agency of Canada","keywords":"Outbreak; Demography; Most recent common ancestor; Phylogenetic tree; Coronavirus disease 2019 (COVID-19); Transmission (telecommunications); Geography; Virology; Biology; Medicine; Genetics; Disease; Internal medicine; Infectious disease (medical specialty); Computer science","authors":[{"name":"Martin Grunnill","is_ca":true},{"name":"Alireza Eshaghi","is_ca":true},{"name":"Lambodhar Damodaran","is_ca":false},{"name":"Sandeep Nagra","is_ca":true},{"name":"Ali Gharouni","is_ca":true},{"name":"Thomas Braukmann","is_ca":true},{"name":"Shawn T. Clark","is_ca":true},{"name":"Adriana Peci","is_ca":true},{"name":"Sandra Isabel","is_ca":true},{"name":"Philip Banh","is_ca":true},{"name":"Louis du Plessis","is_ca":false},{"name":"Carmen Lía Murall","is_ca":true},{"name":"Caroline Colijn","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Maan Hasso","is_ca":true},{"name":"Justin Bahl","is_ca":false},{"name":"Heba H. Mostafa","is_ca":false},{"name":"Jonathan B. Gubbay","is_ca":true},{"name":"Samir N. Patel","is_ca":true},{"name":"Venkata R. Duvvuri","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07411262941184178,"gpt":0.3789612208185391,"spread":0.3048485914066973,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000161539,0.0001174456,0.0002289844,0.0001037385,0.0001000311,0.00003826366,0.0003270464,0.00003254347,0.0002169569],"category_scores_gemma":[0.00004535919,0.0000759565,0.00007206624,0.0003326759,0.0002676393,0.0001331521,0.0002502539,0.0004344199,0.00008551624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007208318,"about_ca_system_score_gemma":0.0001237921,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009916498,"about_ca_topic_score_gemma":0.003137175,"domain_scores_codex":[0.9990349,0.00007521289,0.0002422391,0.000285668,0.0001656442,0.0001963683],"domain_scores_gemma":[0.99898,0.0001702801,0.00004184506,0.0007254334,0.00003412963,0.00004825629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002100345,0.0001550614,0.5043619,0.00005084024,0.0004634998,0.00003523408,0.0004704218,0.00002186938,0.06415806,0.0001027393,0.001338016,0.4286323],"study_design_scores_gemma":[0.00141445,0.0009326133,0.7566855,0.0003357383,0.0004792802,0.00004927461,0.0006403428,0.04024947,0.00817716,0.0001179967,0.190615,0.0003032378],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927537,0.003154399,0.002091838,0.0005321249,0.000194715,0.0001884856,0.0004469315,0.00007196597,0.0005657983],"genre_scores_gemma":[0.9976639,0.001221616,0.0001847803,0.0004381032,0.0001294334,0.000009791001,0.0002020651,0.00002649543,0.000123871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4283291,"threshold_uncertainty_score":0.9966766,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4394726075","doi":"10.1038/s44298-024-00022-8","title":"Characterizing changes in transcriptome and kinome responses in testicular cells during infection by Ebola virus","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Ebola virus; Sertoli cell; Biology; Virology; Viral replication; Virus; Immunology; Spermatogenesis; Endocrinology","authors":[{"name":"Andrew L. Webb","is_ca":true},{"name":"Brayden G. Schindell","is_ca":true},{"name":"Geoff Soule","is_ca":true},{"name":"Abu Bakar Siddik","is_ca":true},{"name":"Bernard Abrenica","is_ca":true},{"name":"Harram Memon","is_ca":true},{"name":"Ruey‐Chyi Su","is_ca":true},{"name":"David Safronetz","is_ca":true},{"name":"Jason Kindrachuk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03343907636883659,"gpt":0.3251427444669895,"spread":0.2917036680981529,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002795109,0.0001458868,0.0002284592,0.0007414797,0.00005889278,0.00009725807,0.00002896024,0.0001058812,0.0001049715],"category_scores_gemma":[0.000068535,0.0001309433,0.00003935013,0.0005578501,0.00006255977,0.0002064315,0.00002791621,0.0003640359,0.00003797658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001270433,"about_ca_system_score_gemma":0.00004474977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001936926,"about_ca_topic_score_gemma":0.0009303237,"domain_scores_codex":[0.9989524,0.00008409123,0.0002024398,0.0003000478,0.0001634842,0.0002975477],"domain_scores_gemma":[0.9996645,0.00009978662,0.00001645009,0.0001101487,0.00002141065,0.00008769954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001730837,0.00009234311,0.02964293,0.0003237771,0.00001542736,0.0002263393,0.0004436542,0.000001270894,0.9661831,0.0000118933,0.00003764193,0.002848557],"study_design_scores_gemma":[0.0006642825,0.0002271437,0.3134135,0.000532012,0.00002012809,0.00008539467,0.00004870828,0.0001905588,0.6708774,0.0000127171,0.01378389,0.0001442678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964871,0.002257769,0.00001292502,0.0004384555,0.0001674535,0.0002957005,0.00003272359,0.0001089439,0.0001989616],"genre_scores_gemma":[0.9971891,0.001937959,0.00001875355,0.0002334383,0.0001067942,0.00006728312,0.000005685871,0.00002934741,0.0004116505],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2953057,"threshold_uncertainty_score":0.5339711,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4412491221","doi":"10.1038/s44298-025-00141-w","title":"Detection of avian influenza virus in surface waters using passive samplers","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Dalhousie University","keywords":"Waterfowl; Influenza A virus subtype H5N1; Hemagglutinin (influenza); Surface water; Virus; Biology; Virology; Limiting; Wildlife; Avian influenza virus; Biosafety; Ecology; Environmental science; Environmental engineering","authors":[{"name":"Madison Gouthro","is_ca":true},{"name":"Emalie K. Hayes","is_ca":true},{"name":"Taylor Prest","is_ca":true},{"name":"Graham A. Gagnon","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.120373110827947,"gpt":0.4089850811668548,"spread":0.2886119703389078,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002413378,0.000182948,0.000425897,0.0004285584,0.0001044769,0.00001603721,0.0001092527,0.0001182114,0.00003414774],"category_scores_gemma":[0.0006821831,0.0001607197,0.0000948235,0.0007180892,0.0002350818,0.0001451856,0.0001226552,0.0002869286,0.00002166512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003585572,"about_ca_system_score_gemma":0.0001700821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005316766,"about_ca_topic_score_gemma":0.0007490257,"domain_scores_codex":[0.9984478,0.00009819302,0.0004419918,0.0002746494,0.0003391556,0.0003981658],"domain_scores_gemma":[0.9991558,0.000191861,0.00009577046,0.0002991936,0.0001887149,0.000068726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007784173,0.000102523,0.1775536,0.0002250099,0.00016394,0.00002046682,0.0007909226,0.0009384037,0.8157035,0.0000444554,0.00007555862,0.003603222],"study_design_scores_gemma":[0.001989526,0.0001440826,0.1370641,0.0004060727,0.00007538679,0.000002658073,0.0007791437,0.0003514824,0.8504795,0.0001239783,0.008425764,0.0001583879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975197,0.000659083,0.0002243044,0.00007884536,0.0001519458,0.0004575469,0.0000243931,0.00005059004,0.0008335602],"genre_scores_gemma":[0.9977585,0.0001139026,0.0006165154,0.001374183,0.00002924341,0.00001535207,0.000001261763,0.00001955069,0.00007147395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04048954,"threshold_uncertainty_score":0.8037395,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4404601389","doi":"10.1038/s44298-024-00067-9","title":"Reduced cross-protective potential of Omicron compared to ancestral SARS-CoV-2 spike vaccines against potentially zoonotic coronaviruses","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Research Council Canada; Québec Consortium for Drug Discovery","keywords":"Virology; Vaccination; Antibody; Coronavirus; Pandemic; Neutralizing antibody; Biology; Coronavirus disease 2019 (COVID-19); Antigen; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virus; Immunology; Medicine; Disease; Infectious disease (medical specialty)","authors":[{"name":"Tyler M. Renner","is_ca":true},{"name":"Matthew Stuible","is_ca":true},{"name":"Brian Cass","is_ca":true},{"name":"Sylvie Perret","is_ca":true},{"name":"Julie Guimond","is_ca":true},{"name":"Simon Lord‐Dufour","is_ca":true},{"name":"Michael J. McCluskie","is_ca":true},{"name":"Yves Durocher","is_ca":true},{"name":"Bassel Akache","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0816996278483174,"gpt":0.3987645904436565,"spread":0.3170649625953391,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003498301,0.0004624636,0.0008014075,0.0005525884,0.0001641483,0.000248168,0.0004692636,0.0002300583,0.00003718554],"category_scores_gemma":[0.0002566375,0.0004123548,0.0003855943,0.0008343264,0.0002993997,0.000342839,0.000229264,0.0005268778,0.0004446527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000258977,"about_ca_system_score_gemma":0.0007631035,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002270564,"about_ca_topic_score_gemma":0.000435061,"domain_scores_codex":[0.9966878,0.0001048038,0.0007675575,0.0008951437,0.0007779303,0.000766756],"domain_scores_gemma":[0.9985675,0.0001238031,0.0001283753,0.0006495832,0.0004324791,0.00009829572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002500499,0.0002939076,0.01244832,0.0005104912,0.0002946644,0.0003172326,0.0004328785,0.00003820696,0.9755069,0.00006050067,0.0008501764,0.006746252],"study_design_scores_gemma":[0.001819167,0.0006177891,0.03848378,0.0005631154,0.0001600481,0.00005713323,0.0001549794,0.0003472474,0.9415669,0.0001230504,0.01571253,0.0003942621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942739,0.00111118,0.000740287,0.0001809591,0.001015947,0.001288823,0.0001291964,0.0003420933,0.0009176315],"genre_scores_gemma":[0.9839987,0.00001164487,0.0006307094,0.01448718,0.0006185721,0.00009748951,0.00000916904,0.0001036487,0.00004294981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03393998,"threshold_uncertainty_score":0.9998328,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4401850941","doi":"10.1038/s44298-024-00049-x","title":"SARS-CoV-2 infection results in a unique lung proteome long after virus resolution in the hamster","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Long-Term Effects of COVID-19","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Proteome; Biology; Hamster; Lung; Immunology; Virus; Virology; MUC1; Internal medicine; Medicine; Molecular biology; Bioinformatics; Antigen","authors":[{"name":"Amrit S. Boese","is_ca":true},{"name":"Bryce M. Warner","is_ca":true},{"name":"Peter McQueen","is_ca":true},{"name":"Robert Vendramelli","is_ca":true},{"name":"Nikesh Tailor","is_ca":true},{"name":"Bryan D. Griffin","is_ca":true},{"name":"Mable Chan","is_ca":true},{"name":"Jonathan Audet","is_ca":true},{"name":"Anders Leung","is_ca":true},{"name":"Stuart McCorrister","is_ca":true},{"name":"Chris K. Grant","is_ca":true},{"name":"Garrett Westmacott","is_ca":true},{"name":"Darwyn Kobasa","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0306715359398025,"gpt":0.3491968749493708,"spread":0.3185253390095683,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001208754,0.0002217892,0.0002540859,0.0005533611,0.00004050535,0.0001231038,0.0001157328,0.0002059053,0.00001592535],"category_scores_gemma":[0.0007973416,0.0001561646,0.00009985355,0.0007672679,0.00008164648,0.0004282713,0.00006421713,0.0006030218,0.0001355866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004430838,"about_ca_system_score_gemma":0.0001820782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003491223,"about_ca_topic_score_gemma":0.009534024,"domain_scores_codex":[0.9980516,0.0003701196,0.0004355773,0.0004368767,0.00035957,0.0003461953],"domain_scores_gemma":[0.9989302,0.0004641222,0.00005548637,0.000469501,0.00003882928,0.00004190368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01348774,0.001249713,0.4490418,0.00602176,0.0002168599,0.01080489,0.01848754,0.0001869777,0.4690599,0.0007670033,0.02298037,0.007695502],"study_design_scores_gemma":[0.003557353,0.0006593285,0.8152326,0.004550699,0.0001253731,0.0002209227,0.00003423129,0.002533742,0.1388486,0.0007062333,0.03307076,0.0004601885],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913215,0.0007374184,0.0003689049,0.003731489,0.0002871301,0.002084003,0.00001569391,0.0001902079,0.001263637],"genre_scores_gemma":[0.9934804,0.0000688697,0.00011831,0.005307754,0.0002715177,0.0006048695,0.00001368677,0.00003974012,0.00009479417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3661909,"threshold_uncertainty_score":0.6368206,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4402130331","doi":"10.1038/s44298-024-00054-0","title":"Resistance to SARS-CoV-2 infection in camelid nasal organoids is associated with lack of ACE2 expression","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Respiratory tract; Virology; Organoid; Coronavirus; Respiratory system; Respiratory tract infections; Immunology; Seroconversion; Virus; Coronavirus disease 2019 (COVID-19); Pathology; Medicine; Cell biology; Infectious disease (medical specialty); Anatomy","authors":[{"name":"Tim I. Breugem","is_ca":false},{"name":"Samra Riesebosch","is_ca":true},{"name":"Debby Schipper","is_ca":false},{"name":"Anna Z. Mykytyn","is_ca":false},{"name":"Petra van den Doel","is_ca":false},{"name":"Joaquím Segalés","is_ca":false},{"name":"Mart M. Lamers","is_ca":false},{"name":"Bart L. Haagmans","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08385849182540121,"gpt":0.3977402834546999,"spread":0.3138817916292986,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003143708,0.0001675092,0.0003273823,0.0003738243,0.00004071758,0.00004015868,0.00009996307,0.0001573335,0.00002400599],"category_scores_gemma":[0.0005052199,0.0001307106,0.00006005182,0.001232305,0.00007386896,0.0001456482,0.00006564797,0.0003187936,0.0001184174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002669665,"about_ca_system_score_gemma":0.0003292061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006505019,"about_ca_topic_score_gemma":0.002630482,"domain_scores_codex":[0.9984167,0.00007751169,0.0002809493,0.0003691515,0.0005528872,0.0003028277],"domain_scores_gemma":[0.9992898,0.0001621249,0.0000489488,0.0002966081,0.0001728835,0.00002970009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005400404,0.000140171,0.1842968,0.0002049524,0.00004614662,0.0000929994,0.001027767,4.336163e-7,0.8033695,0.00002818435,0.009967136,0.0002859247],"study_design_scores_gemma":[0.0008335619,0.0003103271,0.02621819,0.001431879,0.0000255525,0.000003835794,0.00005047043,0.00002573269,0.9024882,0.00006575821,0.06841586,0.0001306466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961691,0.0004647988,0.00008532185,0.0002761478,0.0001111261,0.0003594085,0.0000206824,0.0001374876,0.002375917],"genre_scores_gemma":[0.9801065,0.00001139527,0.00009253224,0.01944999,0.00008417141,0.00004345654,0.000002220689,0.00004574554,0.000164036],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1580786,"threshold_uncertainty_score":0.5330225,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409838115","doi":"10.1038/s44298-025-00115-y","title":"High host specificity of alphacoronaviruses in Nearctic, insectivorous bats","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of British Columbia; University of Toronto; Dalhousie University; University of Manitoba; Carleton University; Canadian Food Inspection Agency; Trent University; Ministry of Natural Resources and Forestry; University of Saskatchewan; Sunnybrook Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Institute of Infection and Immunity; Innovation Saskatchewan; Canadian Institutes of Health Research; Association of Medical Microbiology and Infectious Disease Canada; Government of Ontario","keywords":"Insectivore; Nearctic ecozone; Host (biology); Biology; Zoology; Ecology; Taxonomy (biology)","authors":[{"name":"Jonathon D. Kotwa","is_ca":true},{"name":"Arkadeb Bhuinya","is_ca":true},{"name":"Winfield Yim","is_ca":true},{"name":"Giulia Gallo","is_ca":false},{"name":"Pahul Singh","is_ca":true},{"name":"Qiang Liu","is_ca":true},{"name":"Anil Kumar","is_ca":true},{"name":"Emily Chien","is_ca":true},{"name":"Aaron Hou","is_ca":true},{"name":"Hsien-Yao Chee","is_ca":true},{"name":"Juliette Blais-Savoie","is_ca":true},{"name":"Lily Yip","is_ca":true},{"name":"Valerie von Zuben","is_ca":true},{"name":"Karel Wouters","is_ca":true},{"name":"Vikram Misra","is_ca":true},{"name":"Oliver Lung","is_ca":true},{"name":"Dalan Bailey","is_ca":false},{"name":"Finlay Maguire","is_ca":true},{"name":"Arinjay Banerjee","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Christina M. Davy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03446736282565807,"gpt":0.2615692537358191,"spread":0.2271018909101611,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001755615,0.0001245604,0.0002822007,0.00002669798,0.0001409879,0.000008838492,0.0002052023,0.0001625294,0.0003608465],"category_scores_gemma":[0.0001464156,0.00005159185,0.00005797554,0.0003660621,0.0002627373,0.00007327445,0.0001271405,0.0001489443,0.00003705656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002835965,"about_ca_system_score_gemma":0.00001117217,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003754509,"about_ca_topic_score_gemma":0.02259947,"domain_scores_codex":[0.9990926,0.00009918213,0.000248882,0.0002541322,0.00006172812,0.0002434222],"domain_scores_gemma":[0.9992895,0.0005178037,0.00006713424,0.00005745608,0.00004553515,0.00002263202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001480379,0.000248579,0.8677918,0.00001068657,0.00004278188,0.000005905095,0.00007185902,0.000002368072,0.1206069,0.002313275,0.001092381,0.007665413],"study_design_scores_gemma":[0.000164664,0.0001544602,0.959696,0.00001869714,0.000009291864,9.502824e-7,0.0002244417,8.876609e-7,0.03000561,0.001774359,0.00785662,0.00009403376],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995564,0.0007151745,6.520134e-7,0.0007981655,0.0003519789,0.0001301443,0.00003356374,0.0000387701,0.002367504],"genre_scores_gemma":[0.9983672,0.0002619946,0.00004000996,0.001069998,0.00006741375,0.00001827948,0.000004090785,5.101715e-7,0.0001704459],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09190413,"threshold_uncertainty_score":0.9952356,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4405894167","doi":"10.1038/s44298-024-00081-x","title":"Mpox in Central Africa: complex epidemiology requires a constellation approach","year":2024,"lang":"en","type":"letter","venue":"npj Viruses","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Agricultural Research Service; KU Leuven; Instituut voor Tropische Geneeskunde; University of Bern; University of California, Los Angeles; U.S. Department of Agriculture","keywords":"Outbreak; Context (archaeology); Democracy; Epidemiology; Politics; Public health; Transmission (telecommunications); Geography; Political science; Constellation; Development economics; Economic growth; Environmental health; Medicine; Virology; Computer science; Telecommunications; Economics; Pathology","authors":[{"name":"Megan Halbrook","is_ca":false},{"name":"Jean-Claude Makangara-Cigolo","is_ca":false},{"name":"Sydney Merritt","is_ca":false},{"name":"Nicole A. Hoff","is_ca":false},{"name":"Laurens Liesenborghs","is_ca":false},{"name":"Lisa E. Hensley","is_ca":false},{"name":"Koen Vercauteren","is_ca":false},{"name":"Placide Mbala‐Kingebeni","is_ca":false},{"name":"Anne W. Rimoin","is_ca":false},{"name":"Jason Kindrachuk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1580015752514197,"gpt":0.3393023624919094,"spread":0.1813007872404897,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0007459563,0.0004992262,0.001067925,0.0005864663,0.0001194303,0.00003574237,0.0005663543,0.002455542,0.001659601],"category_scores_gemma":[0.0005013604,0.0004200084,0.000277391,0.0003042597,0.0008847521,0.00009295289,0.0002712447,0.004023854,0.003072737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002064736,"about_ca_system_score_gemma":0.0002805871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008357731,"about_ca_topic_score_gemma":0.00007736241,"domain_scores_codex":[0.9949466,0.001555479,0.0008317608,0.0009083409,0.00009724917,0.001660592],"domain_scores_gemma":[0.9976779,0.001480514,0.0001995983,0.0005408842,0.00005286362,0.00004821092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001543461,0.0000553785,0.00116264,0.0002307002,0.0002716258,0.000197652,0.0002833134,0.00000913736,0.004313789,0.0004236855,0.9910579,0.001839831],"study_design_scores_gemma":[0.0005664282,0.00009053021,0.0009576955,0.0001131281,0.00005498363,0.0001191888,0.00004836505,0.00003320167,0.0004652523,0.001629101,0.9955219,0.0004002215],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.007992449,0.1331139,0.0004746021,0.4879139,0.008232281,0.003905221,0.00423218,0.001386016,0.3527494],"genre_scores_gemma":[0.128802,0.00217218,0.0007022721,0.8332146,0.004153649,0.0002340497,0.008213211,0.000302121,0.02220587],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.3453007,"threshold_uncertainty_score":0.9998252,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4415522885","doi":"10.1038/s44298-025-00158-1","title":"Gut infection and dysbiosis are hallmarks of severe SARS-CoV-2 variants","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"COVID-19 Clinical Research Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology Industry Research Assistance Council; Department of Biotechnology, Ministry of Science and Technology, India","keywords":"Infectivity; Dysbiosis; Virulence; Virus; Respiratory system; Receptor; Microbiome; Gut flora; Pathogenesis; Immune system","authors":[{"name":"Santhosh Kambaiah Nagaraj","is_ca":false},{"name":"Christy M. Joy","is_ca":false},{"name":"Rishad Shiraz","is_ca":false},{"name":"Rohan Narayan","is_ca":false},{"name":"Sumandeep Kaur","is_ca":false},{"name":"Oyahida Khatun","is_ca":false},{"name":"Sagar Dubey","is_ca":false},{"name":"James Ng","is_ca":true},{"name":"Nischay Mishra","is_ca":true},{"name":"Shashank Tripathi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08136089131164263,"gpt":0.4477755409770621,"spread":0.3664146496654195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0003034448,0.0001099636,0.0003680842,0.000161068,0.00007266305,0.00001252222,0.00005563107,0.0001025153,0.00003939727],"category_scores_gemma":[0.01677,0.00008987769,0.00007690911,0.0002897453,0.0001714318,0.00006556063,0.0001942045,0.0001959858,0.00001450602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000619615,"about_ca_system_score_gemma":0.0001396321,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008358877,"about_ca_topic_score_gemma":0.0003051369,"domain_scores_codex":[0.9990106,0.00006019131,0.000276423,0.0002466096,0.0002288631,0.0001772691],"domain_scores_gemma":[0.9977756,0.001662119,0.00007915673,0.0002533624,0.0001846359,0.00004513741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000528794,0.0003606156,0.8875411,0.001708226,0.0004500066,0.00002438547,0.0001255812,0.000003090514,0.07417645,0.0003630921,0.01674585,0.01797277],"study_design_scores_gemma":[0.001265085,0.0002144394,0.9497764,0.0006217918,0.0001349953,0.000001084709,0.00002705711,0.00006496374,0.01566955,0.0006728921,0.03146569,0.00008611082],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898064,0.0003783982,0.0001955245,0.003797975,0.0001502424,0.0003389279,0.00002509623,0.00006183649,0.005245646],"genre_scores_gemma":[0.9934044,0.001221527,0.0001162757,0.004780487,0.00004985245,0.00001781101,0.000001338422,0.000008326831,0.0004000116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06223521,"threshold_uncertainty_score":0.9915122,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4409799210","doi":"10.1038/s44298-025-00116-x","title":"Potent neutralising monoclonal antibodies targeting the spike of NL63 coronavirus","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"National Health and Medical Research Council; Medical Research Council","keywords":"Monoclonal antibody; Spike (software development); Virology; Coronavirus; Antibody; Spike Protein; Coronavirus disease 2019 (COVID-19); Biology; Medicine; Immunology; Computer science; Pathology; Infectious disease (medical specialty)","authors":[{"name":"Wen Shi Lee","is_ca":false},{"name":"George Taiaroa","is_ca":false},{"name":"Robyn Esterbauer","is_ca":false},{"name":"Meghan Conlan","is_ca":false},{"name":"Jessica A. Neil","is_ca":false},{"name":"Matthew J. Gartner","is_ca":false},{"name":"Monique L. Smith","is_ca":false},{"name":"Mingyang Wang","is_ca":false},{"name":"Rory A. Shepherd","is_ca":false},{"name":"Thomas Tran","is_ca":false},{"name":"Phillip Pymm","is_ca":false},{"name":"Lara S. U. Schwab","is_ca":false},{"name":"Andrew P. Kelly","is_ca":false},{"name":"Ellie Reilly","is_ca":false},{"name":"Thakshila Amarasena","is_ca":false},{"name":"Bruce D. Wines","is_ca":false},{"name":"P. Mark Hogarth","is_ca":false},{"name":"Jennifer A. Juno","is_ca":false},{"name":"Stephen J. Kent","is_ca":false},{"name":"Hyon‐Xhi Tan","is_ca":false},{"name":"Kanta Subbarao","is_ca":true},{"name":"Adam K. Wheatley","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08297973459982895,"gpt":0.400342168418213,"spread":0.317362433818384,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003658826,0.0001481902,0.0002888266,0.0001401104,0.000168638,0.00003564572,0.000216106,0.00007546935,0.00001917183],"category_scores_gemma":[0.0002896736,0.00009858128,0.0001457827,0.0003139724,0.0002418556,0.00007312252,0.000106355,0.0002714696,0.00003069475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005750925,"about_ca_system_score_gemma":0.0002503912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009497652,"about_ca_topic_score_gemma":0.00004845877,"domain_scores_codex":[0.9986826,0.00006479079,0.0003237703,0.0002347657,0.0003745904,0.000319473],"domain_scores_gemma":[0.999162,0.0002652109,0.00007496497,0.0003178331,0.0001581985,0.00002179167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000362565,0.0001442333,0.3591533,0.0001931252,0.0001334493,0.00004506993,0.0003620012,0.000005055619,0.6253356,0.001530851,0.00221592,0.01051884],"study_design_scores_gemma":[0.0006740148,0.00009883523,0.05891643,0.0002043945,0.00007820601,0.000008739114,0.0004545416,0.0001411212,0.7940903,0.0003928189,0.1448404,0.0001002666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870566,0.003440496,0.0001147831,0.0007050744,0.0002224332,0.0002751233,0.0000118543,0.0000579282,0.008115714],"genre_scores_gemma":[0.9564568,0.00003097258,0.0002972172,0.04297118,0.0001410551,0.00001330654,0.000001460139,0.00001632985,0.0000716202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3002369,"threshold_uncertainty_score":0.4020028,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4414055646","doi":"10.1038/s44298-025-00147-4","title":"Rodent adapted marburg viruses are lethal in ferrets","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Research Manitoba; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Marburg virus; Filoviridae; Virus; Pathogenesis; Viral replication; Immune system; Rodent","authors":[{"name":"Zachary Schiffman","is_ca":true},{"name":"Lauren Garnett","is_ca":true},{"name":"Kaylie N. Tran","is_ca":true},{"name":"Jonathan Audet","is_ca":true},{"name":"Kevin Tierney","is_ca":true},{"name":"Kim Azaransky","is_ca":true},{"name":"Shihua He","is_ca":true},{"name":"Logan Banadyga","is_ca":true},{"name":"James E. Strong","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07044035647569181,"gpt":0.389573903783994,"spread":0.3191335473083022,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002000069,0.0001573086,0.0003165534,0.0004699926,0.00009347522,0.00004155446,0.0001034241,0.0001321977,0.0006723733],"category_scores_gemma":[0.000236822,0.0001337016,0.0001016082,0.0006788978,0.00008249107,0.0001036083,0.0001072309,0.0003879452,0.0002079086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001655354,"about_ca_system_score_gemma":0.0001604699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001819614,"about_ca_topic_score_gemma":0.001418389,"domain_scores_codex":[0.9987291,0.00007115346,0.0002798249,0.0002975804,0.0002801717,0.0003422342],"domain_scores_gemma":[0.9993578,0.00009079897,0.00004089844,0.0003047327,0.0001048816,0.000100896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001483852,0.001239729,0.8770192,0.0002955905,0.0002240594,0.001036582,0.0002164181,0.0001052887,0.06110909,0.001771266,0.02829462,0.02720428],"study_design_scores_gemma":[0.002652273,0.0002480419,0.7822205,0.000663244,0.00006666403,0.00005746322,0.0004004349,0.0005366365,0.05229662,0.000335867,0.1602635,0.0002586948],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9692098,0.001016222,0.0001415405,0.00124513,0.0002921699,0.0003808896,0.00001443431,0.0001211671,0.02757864],"genre_scores_gemma":[0.9937456,0.0001242867,0.00008500391,0.002550673,0.0001095586,0.00005804051,0.000004360184,0.00001819482,0.003304319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1319689,"threshold_uncertainty_score":0.7362016,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4413299194","doi":"10.1038/s44298-025-00143-8","title":"Survival and transmission fitness of SARS-CoV-2 over the time-of-flight in an aerosolization chamber","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Infection Control and Ventilation","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"CenterLine (Canada); Western University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Roche Canada","keywords":"Aerosolization; Transmission (telecommunications); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Biology; Virus; Replicate; Virology; Medicine; Infectious disease (medical specialty); Inhalation","authors":[{"name":"Yiying Zhang","is_ca":true},{"name":"Justin M. Donovan","is_ca":true},{"name":"Dylan W. Weninger","is_ca":true},{"name":"Victor L. Lam","is_ca":true},{"name":"Richard M. Gibson","is_ca":true},{"name":"Daniel Paquette","is_ca":true},{"name":"Alex Lescanec","is_ca":true},{"name":"Christopher T. DeGroot","is_ca":true},{"name":"Jessica L. Prodger","is_ca":true},{"name":"Franco Berruti","is_ca":true},{"name":"Eric Savory","is_ca":true},{"name":"Eric J. Arts","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03460122186237632,"gpt":0.3363956769610454,"spread":0.3017944550986691,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001490785,0.00005314126,0.0001427945,0.00007917331,0.00002678647,0.000004886333,0.0000178765,0.00005409641,0.00004976839],"category_scores_gemma":[0.00002414558,0.00003529314,0.00002670165,0.0001687658,0.00003737005,0.00007841746,0.000006885141,0.00004569886,0.000001327932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008381152,"about_ca_system_score_gemma":0.0000267665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001184045,"about_ca_topic_score_gemma":0.00007409956,"domain_scores_codex":[0.9995456,0.00005037623,0.0001749494,0.00008336877,0.00009062366,0.00005510705],"domain_scores_gemma":[0.9997424,0.00004429661,0.00004841094,0.00009398021,0.00006173603,0.000009107502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000486442,0.000196407,0.3552417,0.0001389891,0.00002574864,0.000001060272,0.0006045179,0.00003823799,0.6363513,0.00135086,0.0001447585,0.005420001],"study_design_scores_gemma":[0.001414912,0.00008065346,0.6612226,0.0001605245,0.00005052047,0.000001249092,0.00002679405,0.006479184,0.3282608,0.0001318743,0.002126013,0.00004476821],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950163,0.0001099635,0.003085217,0.0001331869,0.00008727248,0.0001671304,0.000002590572,0.00001128319,0.001387029],"genre_scores_gemma":[0.9995776,0.0000235644,0.00002058801,0.0001992222,0.00002595348,0.000004088132,0.000005797327,0.0000044464,0.0001387079],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3080904,"threshold_uncertainty_score":0.1439212,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407882487","doi":"10.1038/s44298-025-00095-z","title":"Pathogenesis of aquatic bird bornavirus 1 in turkeys of different age","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Pathogenesis; Biology; Virology; Zoology; Medicine; Immunology","authors":[{"name":"Lisa Gordon","is_ca":true},{"name":"Alexander Leacy","is_ca":true},{"name":"Phuc H. Pham","is_ca":true},{"name":"Jaime Tuling","is_ca":true},{"name":"Sunoh Che","is_ca":false},{"name":"Antonius El-khoury","is_ca":true},{"name":"Jeff Caswell","is_ca":true},{"name":"Brandon N. Lillie","is_ca":true},{"name":"Leonardo Susta","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02819152234880171,"gpt":0.3239239082740439,"spread":0.2957323859252422,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007155418,0.0001106851,0.0004097598,0.0002118576,0.00001538661,0.000001733326,0.00008555144,0.00009195782,0.0001034427],"category_scores_gemma":[0.0002390464,0.00008592285,0.0001087986,0.0002260833,0.0001286183,0.00002642427,0.00004022049,0.00008357196,0.0000142157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001832509,"about_ca_system_score_gemma":0.00006183008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002901356,"about_ca_topic_score_gemma":0.0001879196,"domain_scores_codex":[0.9991822,0.0000755036,0.0003363115,0.0001504064,0.0001190292,0.0001365951],"domain_scores_gemma":[0.9994749,0.0001200233,0.00007659866,0.0002655792,0.00002055978,0.00004237648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005820273,0.0007132222,0.732164,0.0003271219,0.00007667456,0.00005046365,0.00009261963,0.000004090354,0.259675,0.0007056778,0.000234723,0.005374355],"study_design_scores_gemma":[0.001168376,0.0002197632,0.926897,0.0002878649,0.0001847344,7.492803e-7,0.00006007739,0.00003675301,0.06968103,0.001134226,0.0002669258,0.00006244578],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969047,0.001675705,0.0000282017,0.0001081169,0.00008546484,0.0001878346,0.00002308959,0.00003111165,0.0009557971],"genre_scores_gemma":[0.9988534,0.0001847808,0.00005480797,0.0007099201,0.00001585204,0.00001151267,0.000004329242,0.00001115776,0.0001541662],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.194733,"threshold_uncertainty_score":0.3503832,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407803250","doi":"10.1038/s44298-025-00097-x","title":"Author Correction: Mpox in Central Africa: complex epidemiology requires a constellation approach","year":2025,"lang":"en","type":"erratum","venue":"npj Viruses","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Constellation; Geography; Physics; Astronomy","authors":[{"name":"Megan Halbrook","is_ca":false},{"name":"Jean-Claude Makangara-Cigolo","is_ca":false},{"name":"Sydney Merritt","is_ca":false},{"name":"Nicole A. Hoff","is_ca":false},{"name":"Laurens Liesenborghs","is_ca":false},{"name":"Lisa E. Hensley","is_ca":false},{"name":"Koen Vercauteren","is_ca":false},{"name":"Placide Mbala‐Kingebeni","is_ca":false},{"name":"Anne W. Rimoin","is_ca":false},{"name":"Jason Kindrachuk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.125628197939914,"gpt":0.3522506442322422,"spread":0.2266224462923281,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.001032834,0.0005399953,0.0013442,0.0007275192,0.0002895588,0.00003011805,0.0006068201,0.00242534,0.001805372],"category_scores_gemma":[0.00202403,0.0004963508,0.0002858541,0.0005288668,0.0008266628,0.000111814,0.0003005923,0.002884369,0.000509825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003301074,"about_ca_system_score_gemma":0.0009735769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001635028,"about_ca_topic_score_gemma":0.0005842454,"domain_scores_codex":[0.9945125,0.001978436,0.001007575,0.0009422359,0.0001010429,0.001458209],"domain_scores_gemma":[0.9973628,0.001415719,0.0003754959,0.0006278466,0.0001295971,0.000088532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005319671,0.0001938076,0.002210641,0.0001414841,0.0002599583,0.00001523615,0.0002819461,0.0000302602,0.001148909,0.0007594397,0.9869922,0.007434191],"study_design_scores_gemma":[0.0008436288,0.0001323813,0.006977996,0.0002242537,0.00006107724,0.00005341778,0.0001969964,0.0001989543,0.0003015033,0.0004408059,0.9901525,0.0004165132],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.0004964426,0.04708685,0.0008855332,0.001130888,0.07943549,0.001598389,0.0009595017,0.0004483525,0.8679585],"genre_scores_gemma":[0.04528887,0.00254543,0.0003585217,0.001724377,0.001371009,0.0001645304,0.005958776,0.00008945871,0.942499],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.07806448,"threshold_uncertainty_score":0.9997488,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4413930576","doi":"10.1038/s44298-025-00149-2","title":"Distinct circulating autoantibodies are associated with COVID-19 hospitalization and SARS-CoV-2 neutralization activity","year":2025,"lang":"en","type":"article","venue":"npj Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Sinai Health System; Sunnybrook Hospital; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Autoantibody; Neutralization; Immunology; Antibody; Antigen; Immune system; Virology; Medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Serology; Coronavirus disease 2019 (COVID-19); Internal medicine; Disease","authors":[{"name":"Rajesh Abraham Jacob","is_ca":true},{"name":"Hannah O. Ajoge","is_ca":true},{"name":"Michael R. D’Agostino","is_ca":true},{"name":"Altynay Shigayeva","is_ca":true},{"name":"Arinjay Banerjee","is_ca":false},{"name":"Matthew S. Miller","is_ca":true},{"name":"Allison McGeer","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Karen Mossman","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07142316135281036,"gpt":0.3843370176305916,"spread":0.3129138562777812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002766351,0.0002174064,0.0003584796,0.000246763,0.0003182148,0.0001155296,0.00008635583,0.0001253075,0.000003709561],"category_scores_gemma":[0.00233911,0.0001844876,0.0000549676,0.0007387854,0.0001909801,0.0002291468,0.00007210323,0.0001878516,0.000004809883],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002962418,"about_ca_system_score_gemma":0.0004071057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000687973,"about_ca_topic_score_gemma":0.00117498,"domain_scores_codex":[0.9985735,0.0001238157,0.000199697,0.0004224071,0.0003699129,0.0003106799],"domain_scores_gemma":[0.9990265,0.0003012295,0.000164559,0.0002549648,0.0002122769,0.00004049802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000205034,0.0001733987,0.9226612,0.0003395969,0.0001419533,0.0000528914,0.0003303882,0.000004762323,0.07433865,0.000406614,0.0005303254,0.000815123],"study_design_scores_gemma":[0.00246229,0.0002155743,0.8407336,0.0005511802,0.0002232522,0.00001377175,0.0002186788,0.003368452,0.1398923,0.0003959449,0.01161177,0.0003131859],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915557,0.0002308102,0.00537777,0.000565776,0.00007405939,0.0005137586,0.00002393512,0.0002884976,0.001369715],"genre_scores_gemma":[0.9702249,0.000005541779,0.00003913463,0.02958539,0.00004133544,0.00003521499,0.00001458885,0.00002778826,0.00002606629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08192763,"threshold_uncertainty_score":0.7523185,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}