{"id":"W1080799868","doi":"10.1038/srep12836","title":"The de novo synthesis of ubiquitin: identification of deubiquitinases acting on ubiquitin precursors","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação para a Ciência e a Tecnologia; Programa Operacional Temático Factores de Competitividade; University of Toronto; Ministerio de Economía y Competitividad; Ministério da Educação; International Business Machines Corporation; European Commission; Universidade do Porto; Ministério da Educação e Ciência","keywords":"Ubiquitin; Deubiquitinating enzyme; Ubiquitin ligase; Ubiquitin-conjugating enzyme; Cell biology; Biology; Chemistry; Computational biology; Biochemistry; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003146518,0.0004217465,0.0003546251,0.0007624156,0.0001679449,0.0005370636,0.0002298801,0.0004340885,0.0005649694],"category_scores_gemma":[0.000213142,0.000164198,0.0003300256,0.0003355841,0.0002514089,0.0005773374,0.000375985,0.000386162,0.00040702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002579508,"about_ca_system_score_gemma":0.0001539621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001736955,"about_ca_topic_score_gemma":0.0002590587,"domain_scores_codex":[0.9998716,0.00001744787,0.00001433149,0.00004919787,0.00002672794,0.0000207484],"domain_scores_gemma":[0.9998507,0.0000334923,0.00003431206,0.00002505204,0.00001940265,0.00003696009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001734011,0.00001758982,0.001426004,0.0001577682,0.00001437084,0.0001787357,0.0000184423,0.00008897392,0.9840782,0.0004048344,0.00003772505,0.01340387],"study_design_scores_gemma":[0.000008016005,0.000108135,0.008064555,0.00001221067,0.00002563265,0.0009081198,0.00002415567,0.0005422342,0.9858443,0.0003164551,0.004137491,0.000008781873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9091184,0.05202838,0.03462132,0.0002545676,0.00006908282,0.00005745143,0.0008014532,0.0001583169,0.002891025],"genre_scores_gemma":[0.9614184,0.01280648,0.02252455,0.0001152652,0.00002734307,0.00002914665,0.0009792979,0.00002120589,0.002078259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007624156,"threshold_uncertainty_score":0.001890004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02404412774213624,"score_gpt":0.2735502133904292,"score_spread":0.2495060856482929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}