{"id":"W1080799868","doi":"10.1038/srep12836","title":"The de novo synthesis of ubiquitin: identification of deubiquitinases acting on ubiquitin precursors","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação para a Ciência e a Tecnologia; Programa Operacional Temático Factores de Competitividade; University of Toronto; Ministerio de Economía y Competitividad; Ministério da Educação; International Business Machines Corporation; European Commission; Universidade do Porto; Ministério da Educação e Ciência","keywords":"Ubiquitin; Deubiquitinating enzyme; Ubiquitin ligase; Ubiquitin-conjugating enzyme; Cell biology; Biology; Chemistry; Computational biology; Biochemistry; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004426491,0.0001632968,0.0002007693,0.00009092844,0.0002527117,0.00009971689,0.0003209767,0.0001232601,0.00001188733],"category_scores_gemma":[0.003793736,0.0001308103,0.000146326,0.0002524641,0.0004549437,0.000011156,0.0001344729,0.00009091481,0.000006099583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003248153,"about_ca_system_score_gemma":0.0003658034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001842322,"about_ca_topic_score_gemma":0.00003410067,"domain_scores_codex":[0.9975991,0.0002013554,0.0007912779,0.000544699,0.0005105732,0.0003530238],"domain_scores_gemma":[0.9972665,0.0001312467,0.0009285454,0.001037718,0.0004956959,0.0001403088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001136975,0.0001203962,0.00163337,0.00007175982,0.00003835974,0.00001840771,0.0005604515,0.0001626915,0.9803372,0.0003060951,0.001676245,0.01496131],"study_design_scores_gemma":[0.00009405954,0.0001350032,0.0002150897,0.00007036512,0.00002424882,0.00009335696,0.0007926605,0.00004882359,0.9828209,0.001936016,0.01363462,0.0001349046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918292,0.0003901448,0.0003178944,0.0001094481,0.001245334,0.000339195,0.00001559597,0.00001890116,0.005734352],"genre_scores_gemma":[0.9983117,0.00002034483,0.0003220385,0.00001979776,0.0001278156,0.0000753278,0.00004080575,0.00002305084,0.001059109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0148264,"threshold_uncertainty_score":0.533429,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02404412774213624,"score_gpt":0.2735502133904292,"score_spread":0.2495060856482929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}