{"id":"W116158335","doi":"10.1096/fasebj.22.1_supplement.262.2","title":"Cracking the Second Genetic Code","year":2008,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Computational biology; DNA; Modularity (biology); Biology; DNA microarray; DNA binding site; Genetic code; Genetics; Single-stranded binding protein; Genome; Binding site; DNA-binding protein; HMG-box; DNA sequencing; Gene; Protein–DNA interaction; Evolutionary biology; Gene expression; Transcription factor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003166604,0.0004426622,0.0009477572,0.001187537,0.001291441,0.003233658,0.001037515,0.00216012,0.006947091],"category_scores_gemma":[0.009359484,0.0003632798,0.0006757498,0.000446193,0.008007167,0.005378149,0.003653042,0.004902088,0.001502449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002041577,"about_ca_system_score_gemma":0.001973848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001780327,"about_ca_topic_score_gemma":0.001587121,"domain_scores_codex":[0.9974619,0.000576317,0.0001004944,0.0007310588,0.0007455615,0.0003846847],"domain_scores_gemma":[0.9946873,0.002054851,0.0003357308,0.001437777,0.0009014158,0.0005829983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001222568,0.00003347023,0.002171002,0.000135934,0.00005760069,0.0004207368,0.0007277657,0.001940009,0.01679961,0.9008242,0.009907926,0.06685953],"study_design_scores_gemma":[0.00006296394,0.0001538482,0.004068172,0.0002301663,0.00004182535,0.001527646,0.0006482681,0.009143665,0.01042155,0.7539709,0.2195826,0.000148329],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3038679,0.02724995,0.4064145,0.08644263,0.006546319,0.0001374394,0.0009619929,0.001969256,0.16641],"genre_scores_gemma":[0.8749927,0.006597224,0.06721345,0.01345392,0.001501429,0.0002114381,0.000439359,0.0005691929,0.03502137],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.006947091,"threshold_uncertainty_score":0.02324039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0109004321359777,"score_gpt":0.2174774321779089,"score_spread":0.2065770000419312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}