{"id":"W141493186","doi":"10.1007/978-1-59745-512-1_9","title":"Salmonella Phages and Prophages—Genomics and Practical Aspects","year":2007,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Prophage; Salmonella; Phylogenetic tree; Biology; Bacteriophage; Genome; Phage typing; Genetics; Typing; Genomics; Computational biology; Phage therapy; Virology; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006174819,0.0007910584,0.001026654,0.001837699,0.0002554646,0.001037226,0.000771884,0.001102949,0.003134092],"category_scores_gemma":[0.0005690728,0.0004142833,0.0002847923,0.00214094,0.0006509707,0.001840807,0.0006698658,0.001501794,0.002987433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006450585,"about_ca_system_score_gemma":0.001057526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001039311,"about_ca_topic_score_gemma":0.001263332,"domain_scores_codex":[0.999819,0.00002480561,0.00001797002,0.00003696121,0.00008376686,0.00001751793],"domain_scores_gemma":[0.9997297,0.0001066835,0.00003683668,0.00001257603,0.00007668065,0.00003757863],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007492378,0.00005725059,0.0001435366,0.007455681,0.00003025884,0.0001927959,0.00005849461,0.0004012598,0.004843906,0.004808175,0.01153453,0.9703991],"study_design_scores_gemma":[0.00001291975,0.00008870841,0.0008345119,0.001048219,0.00002156813,0.0008205952,0.00006068913,0.00008014389,0.001128202,0.00209745,0.9937934,0.00001373689],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002304383,0.9975235,0.0002586853,0.0002090202,0.0001624538,0.000003465509,0.000009568066,0.000008591806,0.001594263],"genre_scores_gemma":[0.0009153918,0.9969062,0.0003694187,0.0001453829,0.0001676269,0.000005896643,0.00003177994,0.000002198541,0.001455985],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003134092,"threshold_uncertainty_score":0.01048464,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06349988010661765,"score_gpt":0.4741835412943338,"score_spread":0.4106836611877161,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}