{"id":"W1481103812","doi":"10.1007/978-1-4471-5298-9_13","title":"The Potential of Family-Free Genome Comparison","year":2013,"lang":"en","type":"book-chapter","venue":"Computational biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Genome; Gene family; Computational biology; Comparative genomics; Genomics; Gene; Biology; Genetics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001277529,0.0002438926,0.0002967226,0.0000596291,0.0001038168,0.00001602748,0.0005930528,0.0003745601,0.0001241987],"category_scores_gemma":[0.00002405254,0.0001930244,0.000178909,0.00001577081,0.0003739966,0.000001209267,0.0003992891,0.0001555836,0.0001562967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001757172,"about_ca_system_score_gemma":0.0001037011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005759771,"about_ca_topic_score_gemma":0.000003423688,"domain_scores_codex":[0.9988049,0.00003829501,0.0004360376,0.0003611781,0.0001488126,0.0002107564],"domain_scores_gemma":[0.9988353,0.00004766868,0.00033153,0.0004470445,0.0002861797,0.00005233804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003897295,0.0002272257,0.0003118732,0.0001915488,0.004126152,0.00001126645,0.00009889084,0.01974992,0.4430482,0.3623787,0.0921737,0.07729275],"study_design_scores_gemma":[0.0009043422,0.0006876765,0.00305403,0.00001539732,0.00008033758,0.0000180599,0.00002440255,0.0009394054,0.0003426772,0.123382,0.8700274,0.0005243008],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.0485604,0.0968184,0.1058077,0.002277793,0.004829879,0.004047381,0.002490998,0.0001240799,0.7350434],"genre_scores_gemma":[0.5165416,0.004025988,0.02354337,0.000818474,0.003665952,0.0001309233,0.01953305,0.0003034436,0.4314372],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.7778537,"threshold_uncertainty_score":0.7871305,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01648567117936326,"score_gpt":0.2507804403211416,"score_spread":0.2342947691417783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}