{"id":"W1481136666","doi":"10.1371/journal.pone.0132325","title":"Differences in Transcriptional Activity of Human Papillomavirus Type 6 Molecular Variants in Recurrent Respiratory Papillomatosis","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Memorial University of Newfoundland; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Universidade de São Paulo; Fundação de Amparo à Pesquisa do Estado de São Paulo; Ludwig Institute for Cancer Research","keywords":"Biology; Transcription factor; Luciferase; Genetics; Recurrent Respiratory Papillomatosis; Gene; Transcriptional regulation; Transcription (linguistics); Chromatin immunoprecipitation; Chromatin; Papillomaviridae; Regulation of gene expression; Cancer research; Gene expression; Promoter; Cancer; Transfection; Cervical cancer","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003408447,0.00009800598,0.0004000689,0.0002014369,0.00001407301,0.000006296514,0.00009632279,0.00008375989,0.0005652947],"category_scores_gemma":[0.0001549924,0.00008817953,0.00003916763,0.0003827815,0.00007389676,0.00005871553,0.00003149012,0.0002862368,0.00001363986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001392392,"about_ca_system_score_gemma":0.0001918455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003220793,"about_ca_topic_score_gemma":0.000322479,"domain_scores_codex":[0.9985079,0.0001289546,0.0002436325,0.0002144771,0.000691311,0.0002137738],"domain_scores_gemma":[0.9994059,0.00003400558,0.00003787546,0.000190025,0.0001709132,0.0001613085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001551126,0.005630175,0.3379436,0.0004501085,0.00009984929,0.00006638971,0.0004946067,3.704306e-7,0.648399,0.0006036205,0.00003375424,0.0047274],"study_design_scores_gemma":[0.002477496,0.00104942,0.9291427,0.0002180786,0.00003699916,4.717611e-7,0.00004783061,0.00006567495,0.06629804,0.0005463364,0.000020035,0.00009693043],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930373,0.001176682,0.00000312458,0.0002235746,0.00002345608,0.0002892285,0.00001003636,0.00001277723,0.005223806],"genre_scores_gemma":[0.9996324,0.00008664447,0.00006237839,0.00008667845,0.00003692171,0.00003248132,0.000006295451,0.00001129627,0.00004497232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5911991,"threshold_uncertainty_score":0.6189581,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2445155889481431,"score_gpt":0.3541014384356192,"score_spread":0.1095858494874761,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}